AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0253230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0253230 MtrunA17_Chr2g0312521 96.324 136 5 0 1 136 1 136 1.05e-90 259
Msa0253230 MtrunA17_Chr4g0053641 54.430 79 17 1 12 90 20 79 3.59e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0253230 AT1G79040.1 70.714 140 37 2 1 136 1 140 9.31e-64 191

Find 74 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCGACTGGCTTGGCTATC+TGG 0.093434 2_2:-44863992 Msa0253230:CDS
TTGAACTAATCTAAGATTAA+TGG 0.187241 2_2:+44863532 None:intergenic
TAACATGTTGATAAACATTT+TGG 0.191956 2_2:+44863735 None:intergenic
CCATTTAAGTATTTAGTCTT+TGG 0.256901 2_2:-44863636 Msa0253230:three_prime_UTR
CCAAAGACTAAATACTTAAA+TGG 0.283652 2_2:+44863636 None:intergenic
GTTGAGAGATCTTCAGTTAG+AGG 0.290239 2_2:-44866160 Msa0253230:CDS
CAGTCCTTTGGGTCGTAGAT+AGG 0.323072 2_2:+44864569 None:intergenic
TATATAACCATGCATCTCTA+TGG 0.324691 2_2:-44863763 Msa0253230:three_prime_UTR
CCGGTTGGAGACCAGTCCTT+TGG 0.338674 2_2:+44864557 None:intergenic
CCCGATGGAAAAGATGCTTC+TGG 0.380109 2_2:-44865899 Msa0253230:CDS
CATGAATGAAAATACCTAAT+GGG 0.381352 2_2:+44863193 None:intergenic
ATTAAGACTGACACACCTTA+TGG 0.391389 2_2:-44866085 Msa0253230:intron
AGTATTTAGTCTTTGGCTTA+CGG 0.392100 2_2:-44863629 Msa0253230:three_prime_UTR
AAAATACCTAATGGGATTGC+GGG 0.398310 2_2:+44863201 None:intergenic
GCATGAATGAAAATACCTAA+TGG 0.404950 2_2:+44863192 None:intergenic
GAGGACTACCTACCCTTTCA+AGG 0.407032 2_2:-44866141 Msa0253230:CDS
CGGTTGGAGACCAGTCCTTT+GGG 0.408090 2_2:+44864558 None:intergenic
CACCGTATTTGTCCACAAAC+TGG 0.410816 2_2:+44865002 None:intergenic
TCCGACTGGCTTGGCTATCT+GGG 0.439109 2_2:-44863991 Msa0253230:CDS
AATACACCCGCAATCCCATT+AGG 0.444514 2_2:-44863207 Msa0253230:three_prime_UTR
ACCACTGGCAACAACTTTGA+AGG 0.450669 2_2:+44866117 None:intergenic
AAAGGGTGTTTACCAGTTTG+TGG 0.454085 2_2:-44865014 Msa0253230:CDS
CTCTTTGATAATACTAATGT+AGG 0.459828 2_2:-44863590 Msa0253230:three_prime_UTR
GTGCTAATGTTGATGGATAC+AGG 0.463270 2_2:-44864982 Msa0253230:intron
CTCTCAACTCTGAAAGGAGT+TGG 0.463414 2_2:+44866175 None:intergenic
AAATACGGTGCTAATGTTGA+TGG 0.464376 2_2:-44864989 Msa0253230:CDS
CTTAATCTTCTTGCCACCAC+TGG 0.469574 2_2:+44866102 None:intergenic
TACCAGTTTGTGGACAAATA+CGG 0.473942 2_2:-44865004 Msa0253230:CDS
TATTATATCATAGTGAAACT+TGG 0.474478 2_2:-44866273 Msa0253230:five_prime_UTR
TTATTAATTGCAGGTCCGAC+TGG 0.479017 2_2:-44864005 Msa0253230:intron
AACTTTGAAGGGCCTTGAAA+GGG 0.480906 2_2:+44866129 None:intergenic
ATCTGGGCAGTAACTCTAGC+TGG 0.496777 2_2:-44863975 Msa0253230:CDS
TTTCATGCTGTAAGCTGTCT+CGG 0.498626 2_2:-44863555 Msa0253230:three_prime_UTR
CCAAAGGACTGGTCTCCAAC+CGG 0.502102 2_2:-44864557 Msa0253230:CDS
CAAACAAACTCCACCGAGAT+CGG 0.503968 2_2:-44863485 Msa0253230:three_prime_UTR
ACTCTAGCTGGTCTTCTAGC+TGG 0.504630 2_2:-44863963 Msa0253230:CDS
TTTGTTTGTGCCACGTGGCA+TGG 0.508119 2_2:+44866327 None:intergenic
CAACTTTGAAGGGCCTTGAA+AGG 0.508466 2_2:+44866128 None:intergenic
AGTCCTTTGGGTCGTAGATA+GGG 0.509259 2_2:+44864570 None:intergenic
CACAATATTTATAGAACAGA+AGG 0.512290 2_2:+44863810 None:intergenic
TTCAAAGTTGTTGCCAGTGG+TGG 0.513402 2_2:-44866115 Msa0253230:CDS
AATTGCAGGTCCGACTGGCT+TGG 0.514526 2_2:-44864000 Msa0253230:intron
TGCTTCTGGCAGGAAACAAA+AGG 0.517286 2_2:-44865885 Msa0253230:intron
AAATGTAAAGCACATAATGT+GGG 0.529451 2_2:-44863456 Msa0253230:three_prime_UTR
ACACCAATAGCAATCTGAAA+AGG 0.531985 2_2:-44863306 Msa0253230:three_prime_UTR
AAAATGTAAAGCACATAATG+TGG 0.534848 2_2:-44863457 Msa0253230:three_prime_UTR
TGTTTATAAGTGATAGTCTA+CGG 0.536090 2_2:-44863689 Msa0253230:three_prime_UTR
GAAAATACCTAATGGGATTG+CGG 0.541326 2_2:+44863200 None:intergenic
TTTAGGAACTGGAGGTGGCA+TGG 0.542136 2_2:-44865927 Msa0253230:intron
ATGGAAAAGATGCTTCTGGC+AGG 0.542571 2_2:-44865895 Msa0253230:CDS
TGAAATGGCATCTTCAGTCA+TGG 0.543667 2_2:-44866215 Msa0253230:exon
GAAGATCTCTCAACTCTGAA+AGG 0.546327 2_2:+44866169 None:intergenic
TCTGTTCTATAAATATTGTG+TGG 0.554934 2_2:-44863807 Msa0253230:three_prime_UTR
CCCTTCAAAGTTGTTGCCAG+TGG 0.558879 2_2:-44866118 Msa0253230:CDS
CCACTGGCAACAACTTTGAA+GGG 0.578449 2_2:+44866118 None:intergenic
CTAGCTGGTCTTCTAGCTGG+TGG 0.579831 2_2:-44863960 Msa0253230:CDS
GGTGGCATGGCCTTGCCCGA+TGG 0.580943 2_2:-44865914 Msa0253230:CDS
ATATACTCATCAATTACTTG+TGG 0.583157 2_2:-44863841 Msa0253230:three_prime_UTR
CTATCTACGACCCAAAGGAC+TGG 0.590400 2_2:-44864568 Msa0253230:CDS
GGTGAAGCCATAGAGATGCA+TGG 0.605619 2_2:+44863756 None:intergenic
TTGAAGGGCCTTGAAAGGGT+AGG 0.616076 2_2:+44866133 None:intergenic
ACCTCCAGTGTAGACATCAC+CGG 0.624297 2_2:+44864538 None:intergenic
AATAACAAGTGTACTCAACA+TGG 0.633393 2_2:+44866295 None:intergenic
GTATTATCAAAGAGATAACA+AGG 0.640449 2_2:+44863599 None:intergenic
CAGCCCTATCTACGACCCAA+AGG 0.645785 2_2:-44864573 Msa0253230:CDS
CCAACCGGTGATGTCTACAC+TGG 0.647391 2_2:-44864542 Msa0253230:CDS
AAGCACTTGTGTTGTAGACA+AGG 0.648013 2_2:+44863931 None:intergenic
GCCCAGATAGCCAAGCCAGT+CGG 0.648776 2_2:+44863990 None:intergenic
ACCGGTGATGTCTACACTGG+AGG 0.649993 2_2:-44864539 Msa0253230:intron
AATGTAAAGCACATAATGTG+GGG 0.654683 2_2:-44863455 Msa0253230:three_prime_UTR
CCAGTGTAGACATCACCGGT+TGG 0.671824 2_2:+44864542 None:intergenic
ACAAACTCCACCGAGATCGG+AGG 0.693791 2_2:-44863482 Msa0253230:three_prime_UTR
TTGTATTATATGCATCAGTG+TGG 0.704850 2_2:+44863268 None:intergenic
ACCACATATTCCATGCCACG+TGG 0.713067 2_2:-44866337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATATTTTATTT+TGG - chr2_2:44863666-44863685 Msa0253230:three_prime_UTR 0.0%
!!! TAATTTCAATTTTTTTATTC+AGG - chr2_2:44864479-44864498 Msa0253230:intron 10.0%
!!! AATTTCAATTTTTTTATTCA+GGG - chr2_2:44864480-44864499 Msa0253230:intron 10.0%
!!! TCTTTTTTGGTATAATAATA+TGG + chr2_2:44863279-44863298 None:intergenic 15.0%
!!! GATTTTGTTAATATGATTTT+AGG - chr2_2:44863573-44863592 Msa0253230:three_prime_UTR 15.0%
!!! AACTTAATAAACTTTTTTTG+AGG - chr2_2:44863750-44863769 Msa0253230:three_prime_UTR 15.0%
!!! TGTTTAAAACCTTTATTTAT+TGG - chr2_2:44864136-44864155 Msa0253230:intron 15.0%
!! TATTTACTACCAATAAATAA+AGG + chr2_2:44864148-44864167 None:intergenic 15.0%
!!! AAATTACATTTTGAATAAGT+AGG + chr2_2:44864909-44864928 None:intergenic 15.0%
!!! TAACAAATTTTATTAATTGC+AGG - chr2_2:44865503-44865522 Msa0253230:intron 15.0%
!! TATTATATCATAGTGAAACT+TGG - chr2_2:44863244-44863263 Msa0253230:three_prime_UTR 20.0%
!! TACCAAAAAAGAATTTGAAA+TGG - chr2_2:44863287-44863306 Msa0253230:three_prime_UTR 20.0%
!! CAATTGAACTAAGAAAAAAA+AGG + chr2_2:44863472-44863491 None:intergenic 20.0%
!!! TTATTTTGGTGCATTTATTT+TGG - chr2_2:44863680-44863699 Msa0253230:three_prime_UTR 20.0%
!!! GGAATTTTATGTATTAACAT+AGG - chr2_2:44863704-44863723 Msa0253230:three_prime_UTR 20.0%
!! ATTATCAAGATTTATTTCCA+TGG - chr2_2:44863856-44863875 Msa0253230:three_prime_UTR 20.0%
!! TTATCAAGATTTATTTCCAT+GGG - chr2_2:44863857-44863876 Msa0253230:three_prime_UTR 20.0%
!!! ATTTTTTTGTTTTAATCCTC+TGG + chr2_2:44863887-44863906 None:intergenic 20.0%
!!! ATTTATTCAACTTTTAGCTT+TGG - chr2_2:44863924-44863943 Msa0253230:CDS 20.0%
!! GATCTAATGAAATACATTAA+AGG - chr2_2:44864275-44864294 Msa0253230:intron 20.0%
!! AATAATAGATAACAATGTTC+TGG + chr2_2:44864379-44864398 None:intergenic 20.0%
!!! AATTTTTTTATTCAGGGAAA+GGG - chr2_2:44864486-44864505 Msa0253230:intron 20.0%
!!! TTTCATTTTTTCTGAATTCT+AGG - chr2_2:44864566-44864585 Msa0253230:CDS 20.0%
!! ATTAAACATGTAAACAAAAC+TGG + chr2_2:44864593-44864612 None:intergenic 20.0%
!! ACATGTTTAATAACATAGTT+AGG - chr2_2:44864602-44864621 Msa0253230:intron 20.0%
!!! TTTTTAAAACATTGCTTTAG+AGG + chr2_2:44865089-44865108 None:intergenic 20.0%
!!! TAAAGCAATGTTTTAAAAAC+TGG - chr2_2:44865090-44865109 Msa0253230:intron 20.0%
!! ATTCAATTATTTACTTCAGA+GGG - chr2_2:44865288-44865307 Msa0253230:intron 20.0%
!!! TAACATGTTGATAAACATTT+TGG + chr2_2:44865785-44865804 None:intergenic 20.0%
!!! TTGAACTAATCTAAGATTAA+TGG + chr2_2:44865988-44866007 None:intergenic 20.0%
!!! TGCCATTTCAAATTCTTTTT+TGG + chr2_2:44863292-44863311 None:intergenic 25.0%
!!! GTTAATATGATTTTAGGAAC+TGG - chr2_2:44863579-44863598 Msa0253230:three_prime_UTR 25.0%
! GATAACTAAAATCTGACTTA+TGG + chr2_2:44863819-44863838 None:intergenic 25.0%
!! GTTTTTCATATAAGAAGAGA+GGG + chr2_2:44863979-44863998 None:intergenic 25.0%
!! AGTTTTTCATATAAGAAGAG+AGG + chr2_2:44863980-44863999 None:intergenic 25.0%
! CTCTTCTTATATGAAAAACT+TGG - chr2_2:44863980-44863999 Msa0253230:CDS 25.0%
!!! AAGTAAGGTGGATTTTATAT+AGG - chr2_2:44864253-44864272 Msa0253230:intron 25.0%
!!! CAATTTTTTTATTCAGGGAA+AGG - chr2_2:44864485-44864504 Msa0253230:intron 25.0%
! AGGTGAAATAATTATGTCAT+TGG - chr2_2:44864622-44864641 Msa0253230:intron 25.0%
! TGAAATAATTATGTCATTGG+AGG - chr2_2:44864625-44864644 Msa0253230:intron 25.0%
! TTAAACAATCATGACATAAG+TGG - chr2_2:44864660-44864679 Msa0253230:intron 25.0%
! TAGGTCAAAGTCTATATAAT+TGG + chr2_2:44864890-44864909 None:intergenic 25.0%
!!! AGGTAAGAAACTTCTTTTTT+TGG - chr2_2:44864998-44865017 Msa0253230:CDS 25.0%
!!! GGTAAGAAACTTCTTTTTTT+GGG - chr2_2:44864999-44865018 Msa0253230:CDS 25.0%
! ATAAAATAGCATGAACTGTA+GGG - chr2_2:44865054-44865073 Msa0253230:intron 25.0%
! CACATTATAACATCAACAAT+AGG + chr2_2:44865221-44865240 None:intergenic 25.0%
! GATTCAATTATTTACTTCAG+AGG - chr2_2:44865287-44865306 Msa0253230:intron 25.0%
!! TTTGTTATCATACTATTGCT+AGG + chr2_2:44865490-44865509 None:intergenic 25.0%
! ATATACTCATCAATTACTTG+TGG - chr2_2:44865676-44865695 Msa0253230:intron 25.0%
! CACAATATTTATAGAACAGA+AGG + chr2_2:44865710-44865729 None:intergenic 25.0%
! TCTGTTCTATAAATATTGTG+TGG - chr2_2:44865710-44865729 Msa0253230:intron 25.0%
! TGTTTATAAGTGATAGTCTA+CGG - chr2_2:44865828-44865847 Msa0253230:intron 25.0%
! CCAAAGACTAAATACTTAAA+TGG + chr2_2:44865884-44865903 None:intergenic 25.0%
!! CCATTTAAGTATTTAGTCTT+TGG - chr2_2:44865881-44865900 Msa0253230:intron 25.0%
! GTATTATCAAAGAGATAACA+AGG + chr2_2:44865921-44865940 None:intergenic 25.0%
!! CTCTTTGATAATACTAATGT+AGG - chr2_2:44865927-44865946 Msa0253230:intron 25.0%
! AAAATGTAAAGCACATAATG+TGG - chr2_2:44866060-44866079 Msa0253230:intron 25.0%
! AAATGTAAAGCACATAATGT+GGG - chr2_2:44866061-44866080 Msa0253230:intron 25.0%
! CATGAATGAAAATACCTAAT+GGG + chr2_2:44866327-44866346 None:intergenic 25.0%
AATAACAAGTGTACTCAACA+TGG + chr2_2:44863225-44863244 None:intergenic 30.0%
GTACTAATGAACTAACCATA+AGG + chr2_2:44863450-44863469 None:intergenic 30.0%
!! AATATGATTTTAGGAACTGG+AGG - chr2_2:44863582-44863601 Msa0253230:three_prime_UTR 30.0%
!!! TTTTGGTGCATTTATTTTGG+TGG - chr2_2:44863683-44863702 Msa0253230:three_prime_UTR 30.0%
TATGTATTAACATAGGCTTG+TGG - chr2_2:44863711-44863730 Msa0253230:three_prime_UTR 30.0%
! TTGATAATTCGTAGTTCGAT+CGG + chr2_2:44863844-44863863 None:intergenic 30.0%
AGAATAAATAGTAGACCAAG+AGG + chr2_2:44863950-44863969 None:intergenic 30.0%
! GAAAAACTTGGTAGTTTCTA+AGG - chr2_2:44863992-44864011 Msa0253230:CDS 30.0%
TAAGTAGAGAGTGATTCTTA+AGG - chr2_2:44864094-44864113 Msa0253230:intron 30.0%
AAGTAGAGAGTGATTCTTAA+GGG - chr2_2:44864095-44864114 Msa0253230:intron 30.0%
GTTTCTCACAAGATAAAGTA+AGG - chr2_2:44864238-44864257 Msa0253230:intron 30.0%
! TTGAGTGTCCCTTATATTTT+TGG - chr2_2:44864398-44864417 Msa0253230:intron 30.0%
! TGAGTGTCCCTTATATTTTT+GGG - chr2_2:44864399-44864418 Msa0253230:intron 30.0%
CAGAAAGCCCAAAAATATAA+GGG + chr2_2:44864409-44864428 None:intergenic 30.0%
TCAGAAAGCCCAAAAATATA+AGG + chr2_2:44864410-44864429 None:intergenic 30.0%
GCTCGTACATATAAAAAAGT+TGG - chr2_2:44864777-44864796 Msa0253230:intron 30.0%
GATAAAATAGCATGAACTGT+AGG - chr2_2:44865053-44865072 Msa0253230:intron 30.0%
!! TAGAGAGTAGTGTTTAGTTT+TGG - chr2_2:44865323-44865342 Msa0253230:intron 30.0%
AAATCTTTGTATAGCCAACA+CGG + chr2_2:44865430-44865449 None:intergenic 30.0%
TATATAACCATGCATCTCTA+TGG - chr2_2:44865754-44865773 Msa0253230:intron 30.0%
! AGTATTTAGTCTTTGGCTTA+CGG - chr2_2:44865888-44865907 Msa0253230:CDS 30.0%
AATGTAAAGCACATAATGTG+GGG - chr2_2:44866062-44866081 Msa0253230:intron 30.0%
! TTACCTTTTCAGATTGCTAT+TGG + chr2_2:44866217-44866236 None:intergenic 30.0%
TTGTATTATATGCATCAGTG+TGG + chr2_2:44866252-44866271 None:intergenic 30.0%
GCATGAATGAAAATACCTAA+TGG + chr2_2:44866328-44866347 None:intergenic 30.0%
ATTAAGACTGACACACCTTA+TGG - chr2_2:44863432-44863451 Msa0253230:three_prime_UTR 35.0%
AACCACATAGGCTAATTGAA+AGG - chr2_2:44864051-44864070 Msa0253230:intron 35.0%
! ATCCTTTCAATTAGCCTATG+TGG + chr2_2:44864056-44864075 None:intergenic 35.0%
TCTCACAAGATAAAGTAAGG+TGG - chr2_2:44864241-44864260 Msa0253230:intron 35.0%
! TTTTGGGCTTTCTGAATTGT+TGG - chr2_2:44864415-44864434 Msa0253230:intron 35.0%
TACCAGTTTGTGGACAAATA+CGG - chr2_2:44864513-44864532 Msa0253230:intron 35.0%
! AAATACGGTGCTAATGTTGA+TGG - chr2_2:44864528-44864547 Msa0253230:intron 35.0%
CAAGACTAATGTCTCATGTT+TGG - chr2_2:44864742-44864761 Msa0253230:intron 35.0%
! GACTAATGTCTCTCATGTTT+TGG - chr2_2:44864836-44864855 Msa0253230:intron 35.0%
ATAAGTTCAACTGGTCGAAT+TGG - chr2_2:44865122-44865141 Msa0253230:intron 35.0%
TAAGTTCAACTGGTCGAATT+GGG - chr2_2:44865123-44865142 Msa0253230:intron 35.0%
! CATGAGCGAAGATAGTTTTT+AGG + chr2_2:44865354-44865373 None:intergenic 35.0%
!!! CCTTCATTTTTAGAGCTACA+TGG + chr2_2:44865656-44865675 None:intergenic 35.0%
!! CCATGTAGCTCTAAAAATGA+AGG - chr2_2:44865653-44865672 Msa0253230:intron 35.0%
! CAATGCATGTTTTCTGTTCA+CGG + chr2_2:44865810-44865829 None:intergenic 35.0%
!! TACATTTTAACCTCCGATCT+CGG + chr2_2:44866048-44866067 None:intergenic 35.0%
!! GATAAATCTTTTGCTGACTG+AGG + chr2_2:44866117-44866136 None:intergenic 35.0%
ACACCAATAGCAATCTGAAA+AGG - chr2_2:44866211-44866230 Msa0253230:CDS 35.0%
AAAATACCTAATGGGATTGC+GGG + chr2_2:44866319-44866338 None:intergenic 35.0%
GAAAATACCTAATGGGATTG+CGG + chr2_2:44866320-44866339 None:intergenic 35.0%
TGAAATGGCATCTTCAGTCA+TGG - chr2_2:44863302-44863321 Msa0253230:three_prime_UTR 40.0%
GAAGATCTCTCAACTCTGAA+AGG + chr2_2:44863351-44863370 None:intergenic 40.0%
GTTGAGAGATCTTCAGTTAG+AGG - chr2_2:44863357-44863376 Msa0253230:three_prime_UTR 40.0%
! AACTTTGAAGGGCCTTGAAA+GGG + chr2_2:44863391-44863410 None:intergenic 40.0%
!! ATGATTTTAGGAACTGGAGG+TGG - chr2_2:44863585-44863604 Msa0253230:three_prime_UTR 40.0%
!!! AACTTTTAGCTTTGGCCTCT+TGG - chr2_2:44863932-44863951 Msa0253230:CDS 40.0%
!! CTTGGTAGTTTCTAAGGTGT+TGG - chr2_2:44863998-44864017 Msa0253230:intron 40.0%
CCTATGTGGTTGAGATGTTA+AGG + chr2_2:44864042-44864061 None:intergenic 40.0%
CCTTAACATCTCAACCACAT+AGG - chr2_2:44864039-44864058 Msa0253230:intron 40.0%
! GGCTTTCTGAATTGTTGGTT+TGG - chr2_2:44864420-44864439 Msa0253230:intron 40.0%
!! AAAGGGTGTTTACCAGTTTG+TGG - chr2_2:44864503-44864522 Msa0253230:intron 40.0%
! GTGCTAATGTTGATGGATAC+AGG - chr2_2:44864535-44864554 Msa0253230:intron 40.0%
ATAGGGCTGCATAATAAGAC+AGG + chr2_2:44864933-44864952 None:intergenic 40.0%
GCATGAACTGTAGGGATTTA+TGG - chr2_2:44865062-44865081 Msa0253230:intron 40.0%
ATCGAGCTGATAAGTTCAAC+TGG - chr2_2:44865113-44865132 Msa0253230:intron 40.0%
CAACTATTTCAAGACCGTGT+TGG - chr2_2:44865413-44865432 Msa0253230:intron 40.0%
TTATTAATTGCAGGTCCGAC+TGG - chr2_2:44865512-44865531 Msa0253230:intron 40.0%
AAGCACTTGTGTTGTAGACA+AGG + chr2_2:44865589-44865608 None:intergenic 40.0%
TTTCATGCTGTAAGCTGTCT+CGG - chr2_2:44865962-44865981 Msa0253230:intron 40.0%
!! GTGATTTTGTTTGTGCCACG+TGG + chr2_2:44863198-44863217 None:intergenic 45.0%
! CTCTCAACTCTGAAAGGAGT+TGG + chr2_2:44863345-44863364 None:intergenic 45.0%
! CAACTTTGAAGGGCCTTGAA+AGG + chr2_2:44863392-44863411 None:intergenic 45.0%
CCACTGGCAACAACTTTGAA+GGG + chr2_2:44863402-44863421 None:intergenic 45.0%
ACCACTGGCAACAACTTTGA+AGG + chr2_2:44863403-44863422 None:intergenic 45.0%
TTCAAAGTTGTTGCCAGTGG+TGG - chr2_2:44863402-44863421 Msa0253230:three_prime_UTR 45.0%
CTTAATCTTCTTGCCACCAC+TGG + chr2_2:44863418-44863437 None:intergenic 45.0%
!!! CCAGAAGCATCTTTTCCATC+GGG + chr2_2:44863621-44863640 None:intergenic 45.0%
!!! GCCAGAAGCATCTTTTCCAT+CGG + chr2_2:44863622-44863641 None:intergenic 45.0%
ATGGAAAAGATGCTTCTGGC+AGG - chr2_2:44863622-44863641 Msa0253230:three_prime_UTR 45.0%
TGCTTCTGGCAGGAAACAAA+AGG - chr2_2:44863632-44863651 Msa0253230:three_prime_UTR 45.0%
TATTTCCATGGGAACACCAG+AGG - chr2_2:44863868-44863887 Msa0253230:three_prime_UTR 45.0%
TTAATCCTCTGGTGTTCCCA+TGG + chr2_2:44863876-44863895 None:intergenic 45.0%
CACCGTATTTGTCCACAAAC+TGG + chr2_2:44864518-44864537 None:intergenic 45.0%
AGTCCTTTGGGTCGTAGATA+GGG + chr2_2:44864950-44864969 None:intergenic 45.0%
TTGGGAATCGACTACTTCAC+CGG - chr2_2:44865141-44865160 Msa0253230:intron 45.0%
!! CGAATTGCTCAGTTCTGAAC+CGG + chr2_2:44865163-44865182 None:intergenic 45.0%
CAAACAAACTCCACCGAGAT+CGG - chr2_2:44866032-44866051 Msa0253230:intron 45.0%
!! ATTTTAACCTCCGATCTCGG+TGG + chr2_2:44866045-44866064 None:intergenic 45.0%
!! TCTTTTGCTGACTGAGGTTG+AGG + chr2_2:44866111-44866130 None:intergenic 45.0%
AATACACCCGCAATCCCATT+AGG - chr2_2:44866310-44866329 Msa0253230:five_prime_UTR 45.0%
GAGGACTACCTACCCTTTCA+AGG - chr2_2:44863376-44863395 Msa0253230:three_prime_UTR 50.0%
TTGAAGGGCCTTGAAAGGGT+AGG + chr2_2:44863387-44863406 None:intergenic 50.0%
CCCTTCAAAGTTGTTGCCAG+TGG - chr2_2:44863399-44863418 Msa0253230:three_prime_UTR 50.0%
TTTAGGAACTGGAGGTGGCA+TGG - chr2_2:44863590-44863609 Msa0253230:three_prime_UTR 50.0%
! AGCATCTTTTCCATCGGGCA+AGG + chr2_2:44863616-44863635 None:intergenic 50.0%
CCCGATGGAAAAGATGCTTC+TGG - chr2_2:44863618-44863637 Msa0253230:three_prime_UTR 50.0%
CAGTCCTTTGGGTCGTAGAT+AGG + chr2_2:44864951-44864970 None:intergenic 50.0%
CTATCTACGACCCAAAGGAC+TGG - chr2_2:44864949-44864968 Msa0253230:intron 50.0%
ACCTCCAGTGTAGACATCAC+CGG + chr2_2:44864982-44865001 None:intergenic 50.0%
ATCTGGGCAGTAACTCTAGC+TGG - chr2_2:44865542-44865561 Msa0253230:intron 50.0%
!! ACTCTAGCTGGTCTTCTAGC+TGG - chr2_2:44865554-44865573 Msa0253230:intron 50.0%
GGTGAAGCCATAGAGATGCA+TGG + chr2_2:44865764-44865783 None:intergenic 50.0%
CAGCCCTATCTACGACCCAA+AGG - chr2_2:44864944-44864963 Msa0253230:intron 55.0%
CGGTTGGAGACCAGTCCTTT+GGG + chr2_2:44864962-44864981 None:intergenic 55.0%
!! CCAAAGGACTGGTCTCCAAC+CGG - chr2_2:44864960-44864979 Msa0253230:intron 55.0%
CCAGTGTAGACATCACCGGT+TGG + chr2_2:44864978-44864997 None:intergenic 55.0%
CCAACCGGTGATGTCTACAC+TGG - chr2_2:44864975-44864994 Msa0253230:intron 55.0%
ACCGGTGATGTCTACACTGG+AGG - chr2_2:44864978-44864997 Msa0253230:intron 55.0%
! AATTGCAGGTCCGACTGGCT+TGG - chr2_2:44865517-44865536 Msa0253230:intron 55.0%
!! TCCGACTGGCTTGGCTATCT+GGG - chr2_2:44865526-44865545 Msa0253230:intron 55.0%
!! CTAGCTGGTCTTCTAGCTGG+TGG - chr2_2:44865557-44865576 Msa0253230:intron 55.0%
ACAAACTCCACCGAGATCGG+AGG - chr2_2:44866035-44866054 Msa0253230:intron 55.0%
CCGGTTGGAGACCAGTCCTT+TGG + chr2_2:44864963-44864982 None:intergenic 60.0%
!! GTCCGACTGGCTTGGCTATC+TGG - chr2_2:44865525-44865544 Msa0253230:intron 60.0%
GCCCAGATAGCCAAGCCAGT+CGG + chr2_2:44865530-44865549 None:intergenic 60.0%
! GGTGGCATGGCCTTGCCCGA+TGG - chr2_2:44863603-44863622 Msa0253230:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 44863192 44866347 44863192 ID=Msa0253230;Name=Msa0253230
chr2_2 mRNA 44863192 44866347 44863192 ID=Msa0253230-mRNA-1;Parent=Msa0253230;Name=Msa0253230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=114|1|1|1|1|1|5|728|136
chr2_2 exon 44863192 44864014 44863192 ID=Msa0253230-mRNA-1:exon:13803;Parent=Msa0253230-mRNA-1
chr2_2 exon 44864540 44864592 44864540 ID=Msa0253230-mRNA-1:exon:13802;Parent=Msa0253230-mRNA-1
chr2_2 exon 44864983 44865038 44864983 ID=Msa0253230-mRNA-1:exon:13801;Parent=Msa0253230-mRNA-1
chr2_2 exon 44865886 44865944 44865886 ID=Msa0253230-mRNA-1:exon:13800;Parent=Msa0253230-mRNA-1
chr2_2 exon 44866086 44866347 44866086 ID=Msa0253230-mRNA-1:exon:13799;Parent=Msa0253230-mRNA-1
chr2_2 five_prime_UTR 44866234 44866347 44866234 ID=Msa0253230-mRNA-1:five_prime_utr;Parent=Msa0253230-mRNA-1
chr2_2 CDS 44866086 44866233 44866086 ID=Msa0253230-mRNA-1:cds;Parent=Msa0253230-mRNA-1
chr2_2 CDS 44865886 44865944 44865886 ID=Msa0253230-mRNA-1:cds;Parent=Msa0253230-mRNA-1
chr2_2 CDS 44864983 44865038 44864983 ID=Msa0253230-mRNA-1:cds;Parent=Msa0253230-mRNA-1
chr2_2 CDS 44864540 44864592 44864540 ID=Msa0253230-mRNA-1:cds;Parent=Msa0253230-mRNA-1
chr2_2 CDS 44863920 44864014 44863920 ID=Msa0253230-mRNA-1:cds;Parent=Msa0253230-mRNA-1
chr2_2 three_prime_UTR 44863192 44863919 44863192 ID=Msa0253230-mRNA-1:three_prime_utr;Parent=Msa0253230-mRNA-1
Gene Sequence

>Msa0253230

ATGGCATCTTCAGTCATGGCTTCTGTGAGTTTGAAACCAACTCCTTTCAGAGTTGAGAGATCTTCAGTTAGAGGACTACCTACCCTTTCAAGGCCCTTCAAAGTTGTTGCCAGTGGTGGCAAGAAGATTAAGACTGACACACCTTATGGAACTGGAGGTGGCATGGCCTTGCCCGATGGAAAAGATGCTTCTGGCAGGAAACAAAAGGGAAAGGGTGTTTACCAGTTTGTGGACAAATACGGTGCTAATGTTGATGGATACAGCCCTATCTACGACCCAAAGGACTGGTCTCCAACCGGTGATGTCTACACTGGAGGTCCGACTGGCTTGGCTATCTGGGCAGTAACTCTAGCTGGTCTTCTAGCTGGTGGTGCACTCCTTGTCTACAACACAAGTGCTTTGTCACAATAG

Protein sequence

>Msa0253230

MASSVMASVSLKPTPFRVERSSVRGLPTLSRPFKVVASGGKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYDPKDWSPTGDVYTGGPTGLAIWAVTLAGLLAGGALLVYNTSALSQ*