Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803310 | G7KF23 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 3.65e-79 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004940 | Msa0803310 | 0.804298 | 2.310095e-49 | -8.615850e-47 |
| Msa0004990 | Msa0803310 | 0.801894 | 7.260662e-49 | -8.615850e-47 |
| Msa0010150 | Msa0803310 | 0.818969 | 1.484734e-52 | -8.615850e-47 |
| Msa0024650 | Msa0803310 | 0.800634 | 1.314807e-48 | -8.615850e-47 |
| Msa0027860 | Msa0803310 | 0.817493 | 3.204767e-52 | -8.615850e-47 |
| Msa0034100 | Msa0803310 | -0.801573 | 8.449383e-49 | -8.615850e-47 |
| Msa0050320 | Msa0803310 | -0.804763 | 1.847586e-49 | -8.615850e-47 |
| Msa0059880 | Msa0803310 | 0.806460 | 8.136586e-50 | -8.615850e-47 |
| Msa0606600 | Msa0803310 | 0.816527 | 5.282569e-52 | -8.615850e-47 |
| Msa0609460 | Msa0803310 | 0.803931 | 2.754207e-49 | -8.615850e-47 |
| Msa0630130 | Msa0803310 | 0.802439 | 5.608345e-49 | -8.615850e-47 |
| Msa0631700 | Msa0803310 | 0.814598 | 1.420022e-51 | -8.615850e-47 |
| Msa0647300 | Msa0803310 | 0.802181 | 6.336465e-49 | -8.615850e-47 |
| Msa0668220 | Msa0803310 | 0.800909 | 1.155123e-48 | -8.615850e-47 |
| Msa0686830 | Msa0803310 | 0.803941 | 2.740624e-49 | -8.615850e-47 |
| Msa0708680 | Msa0803310 | 0.850091 | 2.123823e-60 | -8.615850e-47 |
| Msa0711240 | Msa0803310 | 0.815967 | 7.048281e-52 | -8.615850e-47 |
| Msa0720490 | Msa0803310 | 0.856360 | 3.390345e-62 | -8.615850e-47 |
| Msa0761020 | Msa0803310 | 0.818863 | 1.570022e-52 | -8.615850e-47 |
| Msa0789410 | Msa0803310 | 0.802495 | 5.459203e-49 | -8.615850e-47 |
| Msa0803310 | Msa0803880 | 0.801398 | 9.174564e-49 | -8.615850e-47 |
| Msa0803310 | Msa0814160 | 0.803454 | 3.458796e-49 | -8.615850e-47 |
| Msa0803310 | Msa0841670 | 0.895988 | 5.675851e-76 | -8.615850e-47 |
| Msa0803310 | Msa0896920 | 0.849653 | 2.817132e-60 | -8.615850e-47 |
| Msa0803310 | Msa0932900 | 0.815295 | 9.947135e-52 | -8.615850e-47 |
| Msa0803310 | Msa0932930 | 0.808570 | 2.903111e-50 | -8.615850e-47 |
| Msa0803310 | Msa0970790 | 0.814503 | 1.490346e-51 | -8.615850e-47 |
| Msa0803310 | Msa0996980 | 0.812806 | 3.522161e-51 | -8.615850e-47 |
| Msa0803310 | Msa1006170 | 0.826935 | 2.064895e-54 | -8.615850e-47 |
| Msa0803310 | Msa1022510 | 0.800034 | 1.741399e-48 | -8.615850e-47 |
| Msa0803310 | Msa1024420 | 0.804789 | 1.824626e-49 | -8.615850e-47 |
| Msa0803310 | Msa1037530 | 0.813916 | 2.008783e-51 | -8.615850e-47 |
| Msa0803310 | Msa1038610 | -0.803377 | 3.589175e-49 | -8.615850e-47 |
| Msa0803310 | Msa1048350 | 0.808900 | 2.467891e-50 | -8.615850e-47 |
| Msa0803310 | Msa1049810 | 0.801977 | 6.978565e-49 | -8.615850e-47 |
| Msa0803310 | Msa1063210 | 0.826191 | 3.105688e-54 | -8.615850e-47 |
| Msa0803310 | Msa1064940 | 0.801977 | 6.979235e-49 | -8.615850e-47 |
| Msa0803310 | Msa1074560 | 0.802460 | 5.551936e-49 | -8.615850e-47 |
| Msa0803310 | Msa1082080 | 0.821091 | 4.855328e-53 | -8.615850e-47 |
| Msa0803310 | Msa1087380 | 0.839774 | 1.295558e-57 | -8.615850e-47 |
| Msa0803310 | Msa1100330 | 0.814254 | 1.691946e-51 | -8.615850e-47 |
| Msa0803310 | Msa1106680 | 0.810360 | 1.197997e-50 | -8.615850e-47 |
| Msa0803310 | Msa1130410 | 0.804218 | 2.401069e-49 | -8.615850e-47 |
| Msa0803310 | Msa1150760 | 0.809342 | 1.983609e-50 | -8.615850e-47 |
| Msa0803310 | Msa1162430 | 0.815175 | 1.057626e-51 | -8.615850e-47 |
| Msa0803310 | Msa1173290 | 0.813873 | 2.053435e-51 | -8.615850e-47 |
| Msa0803310 | Msa1177090 | 0.822316 | 2.527974e-53 | -8.615850e-47 |
| Msa0803310 | Msa1191350 | 0.843824 | 1.104921e-58 | -8.615850e-47 |
| Msa0803310 | Msa1214960 | 0.807131 | 5.871858e-50 | -8.615850e-47 |
| Msa0803310 | Msa1238250 | 0.841960 | 3.461153e-58 | -8.615850e-47 |
| Msa0803310 | Msa1319030 | 0.840162 | 1.026365e-57 | -8.615850e-47 |
| Msa0803310 | Msa1319190 | 0.850915 | 1.246833e-60 | -8.615850e-47 |
| Msa0803310 | Msa1355340 | 0.812976 | 3.233256e-51 | -8.615850e-47 |
| Msa0803310 | Msa1357840 | 0.828225 | 1.011697e-54 | -8.615850e-47 |
| Msa0803310 | Msa1380740 | 0.838185 | 3.341258e-57 | -8.615850e-47 |
| Msa0803310 | Msa1446090 | 0.814397 | 1.573375e-51 | -8.615850e-47 |
| Msa0803310 | Msa1464470 | -0.800136 | 1.660382e-48 | -8.615850e-47 |
| Msa0150910 | Msa0803310 | 0.804776 | 1.836142e-49 | -8.615850e-47 |
| Msa0150920 | Msa0803310 | 0.804060 | 2.589790e-49 | -8.615850e-47 |
| Msa0154720 | Msa0803310 | -0.803526 | 3.342682e-49 | -8.615850e-47 |
| Msa0177550 | Msa0803310 | 0.801104 | 1.054050e-48 | -8.615850e-47 |
| Msa0219810 | Msa0803310 | 0.809144 | 2.188032e-50 | -8.615850e-47 |
| Msa0225920 | Msa0803310 | 0.807741 | 4.359208e-50 | -8.615850e-47 |
| Msa0234130 | Msa0803310 | 0.805442 | 1.332537e-49 | -8.615850e-47 |
| Msa0374040 | Msa0803310 | 0.807276 | 5.470555e-50 | -8.615850e-47 |
| Msa0396700 | Msa0803310 | 0.811525 | 6.703956e-51 | -8.615850e-47 |
| Msa0409490 | Msa0803310 | 0.801875 | 7.323141e-49 | -8.615850e-47 |
| Msa0414480 | Msa0803310 | 0.801775 | 7.680953e-49 | -8.615850e-47 |
| Msa0425950 | Msa0803310 | 0.803438 | 3.486459e-49 | -8.615850e-47 |
| Msa0444400 | Msa0803310 | 0.804660 | 1.941437e-49 | -8.615850e-47 |
| Msa0445530 | Msa0803310 | 0.801566 | 8.474278e-49 | -8.615850e-47 |
| Msa0452770 | Msa0803310 | 0.800227 | 1.590954e-48 | -8.615850e-47 |
| Msa0464310 | Msa0803310 | 0.813336 | 2.695156e-51 | -8.615850e-47 |
| Msa0245660 | Msa0803310 | 0.811243 | 7.717505e-51 | -8.615850e-47 |
| Msa0248320 | Msa0803310 | 0.806420 | 8.298547e-50 | -8.615850e-47 |
| Msa0267710 | Msa0803310 | 0.806061 | 9.874649e-50 | -8.615850e-47 |
| Msa0274260 | Msa0803310 | 0.819705 | 1.009543e-52 | -8.615850e-47 |
| Msa0303900 | Msa0803310 | 0.816660 | 4.932724e-52 | -8.615850e-47 |
| Msa0311540 | Msa0803310 | 0.816626 | 5.020206e-52 | -8.615850e-47 |
| Msa0318360 | Msa0803310 | 0.801935 | 7.121123e-49 | -8.615850e-47 |
| Msa0333770 | Msa0803310 | 0.801295 | 9.633344e-49 | -8.615850e-47 |
| Msa0354550 | Msa0803310 | 0.808510 | 2.989669e-50 | -8.615850e-47 |
| Msa0358470 | Msa0803310 | 0.800580 | 1.348287e-48 | -8.615850e-47 |
| Msa0490060 | Msa0803310 | 0.818134 | 2.296377e-52 | -8.615850e-47 |
| Msa0491800 | Msa0803310 | 0.815282 | 1.001132e-51 | -8.615850e-47 |
| Msa0515130 | Msa0803310 | 0.814910 | 1.211145e-51 | -8.615850e-47 |
| Msa0535570 | Msa0803310 | 0.818687 | 1.721185e-52 | -8.615850e-47 |
| Msa0538440 | Msa0803310 | 0.800033 | 1.742349e-48 | -8.615850e-47 |
| Msa0538450 | Msa0803310 | 0.802641 | 5.094613e-49 | -8.615850e-47 |
| Msa0538520 | Msa0803310 | 0.808708 | 2.712283e-50 | -8.615850e-47 |
| Msa0540640 | Msa0803310 | 0.802782 | 4.763491e-49 | -8.615850e-47 |
| Msa0545680 | Msa0803310 | 0.813534 | 2.438047e-51 | -8.615850e-47 |
| Msa0548790 | Msa0803310 | 0.804937 | 1.699680e-49 | -8.615850e-47 |
| Msa0554660 | Msa0803310 | 0.806506 | 7.960255e-50 | -8.615850e-47 |
| Msa0589740 | Msa0803310 | 0.803980 | 2.690754e-49 | -8.615850e-47 |
| Msa0591490 | Msa0803310 | 0.803654 | 3.144787e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803310 | MtrunA17_Chr5g0411241 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 7.02e-83 | 238 |
| Msa0803310 | MtrunA17_Chr5g0411231 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 6.47e-69 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCCTTCAGTCTTGAAAA+TGG | 0.356723 | 5_3:+18413419 | None:intergenic |
| TTATGCAGTGATGGTGGAGC+TGG | 0.397441 | 5_3:-18413516 | Msa0803310:intron |
| CTTGCTCTTGAGTGAAGCTC+TGG | 0.411535 | 5_3:+18414303 | None:intergenic |
| TCACTGCTACTCTCAATAAC+TGG | 0.438274 | 5_3:+18413489 | None:intergenic |
| CCCTTGCCAGAGTTTACACC+AGG | 0.459349 | 5_3:+18413399 | None:intergenic |
| AGGACTGAAGGGCCTGATGC+TGG | 0.490624 | 5_3:-18414025 | Msa0803310:CDS |
| GGCAATGTGTTGTGCAAGAC+AGG | 0.514042 | 5_3:-18414073 | Msa0803310:CDS |
| ACAACACATTGCCCAAGCCC+TGG | 0.525921 | 5_3:+18414083 | None:intergenic |
| CCCTGGTGTAAACTCTGGCA+AGG | 0.541663 | 5_3:-18413400 | Msa0803310:CDS |
| TATGCAGTGATGGTGGAGCT+GGG | 0.557903 | 5_3:-18413515 | Msa0803310:intron |
| ACATTCTGCAAGTGTGGTGA+AGG | 0.561546 | 5_3:-18413453 | Msa0803310:CDS |
| ATTGAGAGTAGCAGTGACAA+TGG | 0.563224 | 5_3:-18413483 | Msa0803310:CDS |
| CAGAGCTTCACTCAAGAGCA+AGG | 0.567749 | 5_3:-18414302 | Msa0803310:CDS |
| TTGCTCTTGAGTGAAGCTCT+GGG | 0.573531 | 5_3:+18414304 | None:intergenic |
| GTTGGACATGTGTTATAACT+AGG | 0.581816 | 5_3:-18414045 | Msa0803310:CDS |
| GTGTTATAACTAGGACTGAA+GGG | 0.595455 | 5_3:-18414036 | Msa0803310:CDS |
| TGTGCAAGACAGGTAAAGGT+TGG | 0.598871 | 5_3:-18414063 | Msa0803310:CDS |
| AAACTCTTATGCAGTGATGG+TGG | 0.602169 | 5_3:-18413522 | Msa0803310:intron |
| GAAGGCCCTGGTGTAAACTC+TGG | 0.603912 | 5_3:-18413405 | Msa0803310:CDS |
| TGTGTTATAACTAGGACTGA+AGG | 0.610701 | 5_3:-18414037 | Msa0803310:CDS |
| CCTGGTGTAAACTCTGGCAA+GGG | 0.620143 | 5_3:-18413399 | Msa0803310:CDS |
| GTGTTGTGCAAGACAGGTAA+AGG | 0.626364 | 5_3:-18414067 | Msa0803310:CDS |
| AGAGCTTCACTCAAGAGCAA+GGG | 0.651871 | 5_3:-18414301 | Msa0803310:intron |
| TCTGCAAGTGTGGTGAAGGG+TGG | 0.652623 | 5_3:-18413449 | Msa0803310:CDS |
| AGTGAAACATTCTGCAAGTG+TGG | 0.671634 | 5_3:-18413459 | Msa0803310:CDS |
| CATTCTGCAAGTGTGGTGAA+GGG | 0.681189 | 5_3:-18413452 | Msa0803310:CDS |
| CCTTGCCAGAGTTTACACCA+GGG | 0.773669 | 5_3:+18413400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTTGTTTGTAATA+TGG | - | chr5_3:18413839-18413858 | Msa0803310:intron | 10.0% |
| !! | TTAATTATTTGTTTGTAATA+TGG | - | chr5_3:18413839-18413858 | Msa0803310:intron | 10.0% |
| !! | TAATATGAAATTGAGATTTA+AGG | + | chr5_3:18413962-18413981 | None:intergenic | 15.0% |
| !! | TAATATGAAATTGAGATTTA+AGG | + | chr5_3:18413962-18413981 | None:intergenic | 15.0% |
| !! | AAACTGTAAAGATGAAATAA+AGG | + | chr5_3:18413405-18413424 | None:intergenic | 20.0% |
| !! | TAAAATAATAATAAGAGGAG+TGG | + | chr5_3:18413719-18413738 | None:intergenic | 20.0% |
| !! | GCAGTTAAAATAATAATAAG+AGG | + | chr5_3:18413724-18413743 | None:intergenic | 20.0% |
| !! | TATCGTGGAAAAAAAATATA+AGG | - | chr5_3:18413769-18413788 | Msa0803310:intron | 20.0% |
| !! | TTATTAGGTAAAAGTTCAAT+AGG | + | chr5_3:18413909-18413928 | None:intergenic | 20.0% |
| !! | AATTTATCGTTCAACTTATT+AGG | + | chr5_3:18413924-18413943 | None:intergenic | 20.0% |
| !! | TTCTATAAGCATAAAATTAG+TGG | + | chr5_3:18414034-18414053 | None:intergenic | 20.0% |
| !! | AAACTGTAAAGATGAAATAA+AGG | + | chr5_3:18413405-18413424 | None:intergenic | 20.0% |
| !! | TAAAATAATAATAAGAGGAG+TGG | + | chr5_3:18413719-18413738 | None:intergenic | 20.0% |
| !! | GCAGTTAAAATAATAATAAG+AGG | + | chr5_3:18413724-18413743 | None:intergenic | 20.0% |
| !! | TATCGTGGAAAAAAAATATA+AGG | - | chr5_3:18413769-18413788 | Msa0803310:intron | 20.0% |
| !! | TTATTAGGTAAAAGTTCAAT+AGG | + | chr5_3:18413909-18413928 | None:intergenic | 20.0% |
| !! | AATTTATCGTTCAACTTATT+AGG | + | chr5_3:18413924-18413943 | None:intergenic | 20.0% |
| !! | TTCTATAAGCATAAAATTAG+TGG | + | chr5_3:18414034-18414053 | None:intergenic | 20.0% |
| !!! | ACGAAAATAGAGCATTATTT+TGG | + | chr5_3:18413492-18413511 | None:intergenic | 25.0% |
| !!! | TTAACCAATAAGTTTTGTGT+AGG | - | chr5_3:18413529-18413548 | Msa0803310:intron | 25.0% |
| !!! | ACGAAAATAGAGCATTATTT+TGG | + | chr5_3:18413492-18413511 | None:intergenic | 25.0% |
| !!! | TTAACCAATAAGTTTTGTGT+AGG | - | chr5_3:18413529-18413548 | Msa0803310:intron | 25.0% |
| CTTTCCTACACAAAACTTAT+TGG | + | chr5_3:18413536-18413555 | None:intergenic | 30.0% | |
| !! | GCAATCATTTTAACAATGGT+TGG | + | chr5_3:18413866-18413885 | None:intergenic | 30.0% |
| !! | TGGTGCAATCATTTTAACAA+TGG | + | chr5_3:18413870-18413889 | None:intergenic | 30.0% |
| CTTTCCTACACAAAACTTAT+TGG | + | chr5_3:18413536-18413555 | None:intergenic | 30.0% | |
| !! | GCAATCATTTTAACAATGGT+TGG | + | chr5_3:18413866-18413885 | None:intergenic | 30.0% |
| !! | TGGTGCAATCATTTTAACAA+TGG | + | chr5_3:18413870-18413889 | None:intergenic | 30.0% |
| ! | CTGAGTTTTTATCTTGAGCT+GGG | + | chr5_3:18413560-18413579 | None:intergenic | 35.0% |
| GTTGGACATGTGTTATAACT+AGG | - | chr5_3:18413619-18413638 | Msa0803310:intron | 35.0% | |
| TGTGTTATAACTAGGACTGA+AGG | - | chr5_3:18413627-18413646 | Msa0803310:intron | 35.0% | |
| GTGTTATAACTAGGACTGAA+GGG | - | chr5_3:18413628-18413647 | Msa0803310:intron | 35.0% | |
| ! | GGCAAAGTTTTTGCTAAATG+TGG | - | chr5_3:18413660-18413679 | Msa0803310:intron | 35.0% |
| ATTTGACAAGAAAGCTATCG+TGG | - | chr5_3:18413754-18413773 | Msa0803310:intron | 35.0% | |
| TAGGTAAGATCTTCATGTCA+TGG | + | chr5_3:18413890-18413909 | None:intergenic | 35.0% | |
| ATCAAACTCTTATGCAGTGA+TGG | - | chr5_3:18414139-18414158 | Msa0803310:intron | 35.0% | |
| !! | TGTTCCATTTTCAAGACTGA+AGG | - | chr5_3:18414241-18414260 | Msa0803310:intron | 35.0% |
| ! | CTGAGTTTTTATCTTGAGCT+GGG | + | chr5_3:18413560-18413579 | None:intergenic | 35.0% |
| GTTGGACATGTGTTATAACT+AGG | - | chr5_3:18413619-18413638 | Msa0803310:intron | 35.0% | |
| TGTGTTATAACTAGGACTGA+AGG | - | chr5_3:18413627-18413646 | Msa0803310:intron | 35.0% | |
| GTGTTATAACTAGGACTGAA+GGG | - | chr5_3:18413628-18413647 | Msa0803310:intron | 35.0% | |
| ! | GGCAAAGTTTTTGCTAAATG+TGG | - | chr5_3:18413660-18413679 | Msa0803310:intron | 35.0% |
| ATTTGACAAGAAAGCTATCG+TGG | - | chr5_3:18413754-18413773 | Msa0803310:intron | 35.0% | |
| TAGGTAAGATCTTCATGTCA+TGG | + | chr5_3:18413890-18413909 | None:intergenic | 35.0% | |
| ATCAAACTCTTATGCAGTGA+TGG | - | chr5_3:18414139-18414158 | Msa0803310:intron | 35.0% | |
| !! | TGTTCCATTTTCAAGACTGA+AGG | - | chr5_3:18414241-18414260 | Msa0803310:intron | 35.0% |
| ! | CCTGAGTTTTTATCTTGAGC+TGG | + | chr5_3:18413561-18413580 | None:intergenic | 40.0% |
| CCAGCTCAAGATAAAAACTC+AGG | - | chr5_3:18413558-18413577 | Msa0803310:intron | 40.0% | |
| TCAAGATAAAAACTCAGGCC+AGG | - | chr5_3:18413563-18413582 | Msa0803310:intron | 40.0% | |
| CAAGATAAAAACTCAGGCCA+GGG | - | chr5_3:18413564-18413583 | Msa0803310:intron | 40.0% | |
| AAACTCTTATGCAGTGATGG+TGG | - | chr5_3:18414142-18414161 | Msa0803310:intron | 40.0% | |
| TCACTGCTACTCTCAATAAC+TGG | + | chr5_3:18414178-18414197 | None:intergenic | 40.0% | |
| ATTGAGAGTAGCAGTGACAA+TGG | - | chr5_3:18414181-18414200 | Msa0803310:intron | 40.0% | |
| AGTGAAACATTCTGCAAGTG+TGG | - | chr5_3:18414205-18414224 | Msa0803310:intron | 40.0% | |
| ! | CCTGAGTTTTTATCTTGAGC+TGG | + | chr5_3:18413561-18413580 | None:intergenic | 40.0% |
| CCAGCTCAAGATAAAAACTC+AGG | - | chr5_3:18413558-18413577 | Msa0803310:intron | 40.0% | |
| TCAAGATAAAAACTCAGGCC+AGG | - | chr5_3:18413563-18413582 | Msa0803310:intron | 40.0% | |
| CAAGATAAAAACTCAGGCCA+GGG | - | chr5_3:18413564-18413583 | Msa0803310:intron | 40.0% | |
| AAACTCTTATGCAGTGATGG+TGG | - | chr5_3:18414142-18414161 | Msa0803310:intron | 40.0% | |
| TCACTGCTACTCTCAATAAC+TGG | + | chr5_3:18414178-18414197 | None:intergenic | 40.0% | |
| ATTGAGAGTAGCAGTGACAA+TGG | - | chr5_3:18414181-18414200 | Msa0803310:intron | 40.0% | |
| AGTGAAACATTCTGCAAGTG+TGG | - | chr5_3:18414205-18414224 | Msa0803310:intron | 40.0% | |
| TTGCTCTTGAGTGAAGCTCT+GGG | + | chr5_3:18413363-18413382 | None:intergenic | 45.0% | |
| AGAGCTTCACTCAAGAGCAA+GGG | - | chr5_3:18413363-18413382 | Msa0803310:CDS | 45.0% | |
| GTGTTGTGCAAGACAGGTAA+AGG | - | chr5_3:18413597-18413616 | Msa0803310:intron | 45.0% | |
| TGTGCAAGACAGGTAAAGGT+TGG | - | chr5_3:18413601-18413620 | Msa0803310:intron | 45.0% | |
| GCAAAAACTTTGCCAGCATC+AGG | + | chr5_3:18413654-18413673 | None:intergenic | 45.0% | |
| ACATTCTGCAAGTGTGGTGA+AGG | - | chr5_3:18414211-18414230 | Msa0803310:intron | 45.0% | |
| CATTCTGCAAGTGTGGTGAA+GGG | - | chr5_3:18414212-18414231 | Msa0803310:intron | 45.0% | |
| AGGGCCTTCAGTCTTGAAAA+TGG | + | chr5_3:18414248-18414267 | None:intergenic | 45.0% | |
| !! | ATTTTCAAGACTGAAGGCCC+TGG | - | chr5_3:18414247-18414266 | Msa0803310:intron | 45.0% |
| TTGCTCTTGAGTGAAGCTCT+GGG | + | chr5_3:18413363-18413382 | None:intergenic | 45.0% | |
| AGAGCTTCACTCAAGAGCAA+GGG | - | chr5_3:18413363-18413382 | Msa0803310:CDS | 45.0% | |
| GTGTTGTGCAAGACAGGTAA+AGG | - | chr5_3:18413597-18413616 | Msa0803310:intron | 45.0% | |
| TGTGCAAGACAGGTAAAGGT+TGG | - | chr5_3:18413601-18413620 | Msa0803310:intron | 45.0% | |
| GCAAAAACTTTGCCAGCATC+AGG | + | chr5_3:18413654-18413673 | None:intergenic | 45.0% | |
| ACATTCTGCAAGTGTGGTGA+AGG | - | chr5_3:18414211-18414230 | Msa0803310:intron | 45.0% | |
| CATTCTGCAAGTGTGGTGAA+GGG | - | chr5_3:18414212-18414231 | Msa0803310:intron | 45.0% | |
| AGGGCCTTCAGTCTTGAAAA+TGG | + | chr5_3:18414248-18414267 | None:intergenic | 45.0% | |
| !! | ATTTTCAAGACTGAAGGCCC+TGG | - | chr5_3:18414247-18414266 | Msa0803310:intron | 45.0% |
| CTTGCTCTTGAGTGAAGCTC+TGG | + | chr5_3:18413364-18413383 | None:intergenic | 50.0% | |
| CAGAGCTTCACTCAAGAGCA+AGG | - | chr5_3:18413362-18413381 | Msa0803310:CDS | 50.0% | |
| TAAAAACTCAGGCCAGGGCT+TGG | - | chr5_3:18413569-18413588 | Msa0803310:intron | 50.0% | |
| AAAAACTCAGGCCAGGGCTT+GGG | - | chr5_3:18413570-18413589 | Msa0803310:intron | 50.0% | |
| GGCAATGTGTTGTGCAAGAC+AGG | - | chr5_3:18413591-18413610 | Msa0803310:intron | 50.0% | |
| !! | TTATGCAGTGATGGTGGAGC+TGG | - | chr5_3:18414148-18414167 | Msa0803310:intron | 50.0% |
| !! | TATGCAGTGATGGTGGAGCT+GGG | - | chr5_3:18414149-18414168 | Msa0803310:intron | 50.0% |
| CCTTGCCAGAGTTTACACCA+GGG | + | chr5_3:18414267-18414286 | None:intergenic | 50.0% | |
| CCTGGTGTAAACTCTGGCAA+GGG | - | chr5_3:18414265-18414284 | Msa0803310:intron | 50.0% | |
| CTTGCTCTTGAGTGAAGCTC+TGG | + | chr5_3:18413364-18413383 | None:intergenic | 50.0% | |
| CAGAGCTTCACTCAAGAGCA+AGG | - | chr5_3:18413362-18413381 | Msa0803310:CDS | 50.0% | |
| TAAAAACTCAGGCCAGGGCT+TGG | - | chr5_3:18413569-18413588 | Msa0803310:intron | 50.0% | |
| AAAAACTCAGGCCAGGGCTT+GGG | - | chr5_3:18413570-18413589 | Msa0803310:intron | 50.0% | |
| GGCAATGTGTTGTGCAAGAC+AGG | - | chr5_3:18413591-18413610 | Msa0803310:intron | 50.0% | |
| !! | TTATGCAGTGATGGTGGAGC+TGG | - | chr5_3:18414148-18414167 | Msa0803310:intron | 50.0% |
| !! | TATGCAGTGATGGTGGAGCT+GGG | - | chr5_3:18414149-18414168 | Msa0803310:intron | 50.0% |
| CCTTGCCAGAGTTTACACCA+GGG | + | chr5_3:18414267-18414286 | None:intergenic | 50.0% | |
| CCTGGTGTAAACTCTGGCAA+GGG | - | chr5_3:18414265-18414284 | Msa0803310:intron | 50.0% | |
| ACAACACATTGCCCAAGCCC+TGG | + | chr5_3:18413584-18413603 | None:intergenic | 55.0% | |
| TCTGCAAGTGTGGTGAAGGG+TGG | - | chr5_3:18414215-18414234 | Msa0803310:intron | 55.0% | |
| GAAGGCCCTGGTGTAAACTC+TGG | - | chr5_3:18414259-18414278 | Msa0803310:intron | 55.0% | |
| CCCTGGTGTAAACTCTGGCA+AGG | - | chr5_3:18414264-18414283 | Msa0803310:intron | 55.0% | |
| CCCTTGCCAGAGTTTACACC+AGG | + | chr5_3:18414268-18414287 | None:intergenic | 55.0% | |
| ACAACACATTGCCCAAGCCC+TGG | + | chr5_3:18413584-18413603 | None:intergenic | 55.0% | |
| TCTGCAAGTGTGGTGAAGGG+TGG | - | chr5_3:18414215-18414234 | Msa0803310:intron | 55.0% | |
| GAAGGCCCTGGTGTAAACTC+TGG | - | chr5_3:18414259-18414278 | Msa0803310:intron | 55.0% | |
| CCCTGGTGTAAACTCTGGCA+AGG | - | chr5_3:18414264-18414283 | Msa0803310:intron | 55.0% | |
| CCCTTGCCAGAGTTTACACC+AGG | + | chr5_3:18414268-18414287 | None:intergenic | 55.0% | |
| AGGACTGAAGGGCCTGATGC+TGG | - | chr5_3:18413639-18413658 | Msa0803310:intron | 60.0% | |
| AGGACTGAAGGGCCTGATGC+TGG | - | chr5_3:18413639-18413658 | Msa0803310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 18413353 | 18414333 | 18413353 | ID=Msa0803310;Name=Msa0803310 |
| chr5_3 | mRNA | 18413353 | 18414333 | 18413353 | ID=Msa0803310-mRNA-1;Parent=Msa0803310;Name=Msa0803310-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|120 |
| chr5_3 | exon | 18414302 | 18414333 | 18414302 | ID=Msa0803310-mRNA-1:exon:7554;Parent=Msa0803310-mRNA-1 |
| chr5_3 | exon | 18413983 | 18414135 | 18413983 | ID=Msa0803310-mRNA-1:exon:7553;Parent=Msa0803310-mRNA-1 |
| chr5_3 | exon | 18413353 | 18413530 | 18413353 | ID=Msa0803310-mRNA-1:exon:7552;Parent=Msa0803310-mRNA-1 |
| chr5_3 | CDS | 18414302 | 18414333 | 18414302 | ID=Msa0803310-mRNA-1:cds;Parent=Msa0803310-mRNA-1 |
| chr5_3 | CDS | 18413983 | 18414135 | 18413983 | ID=Msa0803310-mRNA-1:cds;Parent=Msa0803310-mRNA-1 |
| chr5_3 | CDS | 18413353 | 18413530 | 18413353 | ID=Msa0803310-mRNA-1:cds;Parent=Msa0803310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
