AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685860 MtrunA17_Chr4g0034391 93.588 655 23 3 1 650 1 641 0.0 1151
Msa0685860 MtrunA17_Chr4g0064601 34.505 313 163 11 22 322 7 289 8.24e-34 130
Msa0685860 MtrunA17_Chr4g0032081 26.996 263 164 8 75 323 97 345 6.91e-18 87.4
Msa0685860 MtrunA17_Chr8g0338051 31.416 226 118 11 97 304 93 299 4.53e-15 77.0
Msa0685860 MtrunA17_Chr4g0009941 47.297 74 38 1 179 252 107 179 1.72e-13 70.9
Msa0685860 MtrunA17_Chr7g0238901 42.667 75 42 1 179 253 181 254 7.85e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685860 AT3G18890.1 49.269 684 241 18 9 646 13 636 0.0 536
Msa0685860 AT2G34460.1 35.897 273 141 10 63 325 32 280 2.52e-32 126
Msa0685860 AT3G46780.1 29.889 271 150 10 75 323 89 341 1.72e-14 77.0
Msa0685860 AT4G31530.1 33.152 184 99 10 139 304 122 299 2.46e-13 72.0
Msa0685860 AT4G31530.2 33.152 184 99 10 139 304 122 299 2.75e-13 72.0
Msa0685860 AT2G37660.1 42.353 85 44 3 172 253 168 250 3.13e-12 68.6
Msa0685860 AT5G02240.1 41.975 81 32 2 179 252 105 177 5.94e-12 66.6

Find 219 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTGAAGATACTTTATT+TGG 0.187523 4_4:-50115994 Msa0685860:CDS
GCTTGATACTGCATCAATAT+TGG 0.200433 4_4:+50113632 None:intergenic
TCACTGGGAACAAACAAATT+TGG 0.210597 4_4:-50116344 Msa0685860:CDS
ATCATAAGAGCTCAAGTTTC+AGG 0.231625 4_4:-50117594 Msa0685860:intron
GGCACTTCTGCCACTGGTTC+TGG 0.235947 4_4:+50115508 None:intergenic
TGAGAAATGACATCTATTTC+TGG 0.252631 4_4:+50115208 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_4:+50113674 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_4:+50113758 None:intergenic
TGAAAGTACTATAACATAAA+TGG 0.264411 4_4:+50112880 None:intergenic
TTCTTGTCACTAGGCTTAAC+TGG 0.265489 4_4:+50115292 None:intergenic
TTTCATGTTGCCCACTCTTT+AGG 0.274150 4_4:-50112856 Msa0685860:three_prime_UTR
ATAAAGTATCTTCAGTTGAT+AGG 0.280891 4_4:+50115998 None:intergenic
GAAGATGTATTTGGTGCATT+AGG 0.304395 4_4:+50113795 None:intergenic
CTTGATACTGCATCAATATT+GGG 0.311245 4_4:+50113633 None:intergenic
ATTGATGTAGTTGGTGCATT+AGG 0.312719 4_4:+50114901 None:intergenic
AAAAGTCATCAAGAAATAAA+TGG 0.316117 4_4:+50113010 None:intergenic
TGAAATTGTGGAATGTGATT+TGG 0.325323 4_4:-50116642 Msa0685860:CDS
CAAAGTAAATCACTTCATAT+TGG 0.327885 4_4:-50116372 Msa0685860:CDS
GAACAGATTGGATCAGCATT+AGG 0.355288 4_4:-50116611 Msa0685860:CDS
ACTTGATACTTCCTCAATCT+TGG 0.357838 4_4:+50114852 None:intergenic
GTTAAACAATTGAAGCTTGA+TGG 0.358751 4_4:-50116775 Msa0685860:CDS
AATGCTGATCCAATCTGTTC+TGG 0.362020 4_4:+50116614 None:intergenic
GTGGTCTTGACTTTGGTTCA+TGG 0.366970 4_4:+50113553 None:intergenic
CTTTCACCACAACACCTTCC+AGG 0.367198 4_4:-50117635 Msa0685860:CDS
CACCTCACTCACAGAAGATA+TGG 0.369750 4_4:+50113698 None:intergenic
CTACTGACAGCTGCAGTATC+TGG 0.372433 4_4:+50115598 None:intergenic
GAACCCACAGAAGATGTATT+TGG 0.374097 4_4:+50113786 None:intergenic
AATCTGGCTTACGCAGTATA+AGG 0.381547 4_4:+50115424 None:intergenic
CCTCCATTGGTATGGCTTGA+AGG 0.382049 4_4:+50117772 None:intergenic
GAGAGCTGGTGCATTGGTTC+AGG 0.386003 4_4:-50117237 Msa0685860:intron
CTTCATATTGGTTACTTCAC+TGG 0.386091 4_4:-50116360 Msa0685860:CDS
GTTGATACTGCATCAATATT+GGG 0.387116 4_4:+50113675 None:intergenic
GTTGATACTGCATCAATATT+GGG 0.387116 4_4:+50113759 None:intergenic
AGATACTTTATTTGGTGGTC+AGG 0.389053 4_4:-50115986 Msa0685860:CDS
TGGTCAGGTGTCAAACCTTC+AGG 0.392643 4_4:-50115971 Msa0685860:intron
GCTGCAGCAGTTAAACCTTC+TGG 0.393891 4_4:-50117699 Msa0685860:CDS
TCTATTTCTGGAATGTTACT+TGG 0.402869 4_4:+50115220 None:intergenic
CAATATGAAGTGATTTACTT+TGG 0.403428 4_4:+50116373 None:intergenic
TCTTCCACTGAAAGTTGAGC+TGG 0.403497 4_4:+50114823 None:intergenic
ATGGATACTGCATCAGTATT+GGG 0.405249 4_4:+50113717 None:intergenic
GTTGTTCTGTTTCTTTCTGA+GGG 0.405384 4_4:+50115530 None:intergenic
CAGACAACAACTTCCTCAAA+AGG 0.412884 4_4:-50115187 Msa0685860:CDS
TTCAGGGAGCTTATAAAGCT+TGG 0.416341 4_4:-50117293 Msa0685860:intron
TCTTTCTGAGGGGAAATACT+AGG 0.416692 4_4:+50115541 None:intergenic
TGTATCTTCCACTGAGAGTT+GGG 0.420266 4_4:+50113599 None:intergenic
TAGGAACTGCCTCCTTCATA+TGG 0.421595 4_4:-50113241 Msa0685860:three_prime_UTR
GATAACTTAGTATTTGTTGC+TGG 0.422708 4_4:-50117439 Msa0685860:CDS
ACCTTGGGCGAAGGAATGTA+AGG 0.425014 4_4:+50115730 None:intergenic
AGATCCTGTCCATCCTCCTT+TGG 0.426961 4_4:+50113576 None:intergenic
AAATCAACTTACATTGCATA+AGG 0.428183 4_4:+50114745 None:intergenic
TTGAAGTCAGAGCTGGAGTA+AGG 0.429917 4_4:-50117268 Msa0685860:CDS
TCACAATGACTTACTGTGTA+TGG 0.432865 4_4:+50116158 None:intergenic
AACAGATTGGATCAGCATTA+GGG 0.436120 4_4:-50116610 Msa0685860:CDS
AAATACTAAGTTATCATCCT+TGG 0.436502 4_4:+50117447 None:intergenic
GGTTGTTCTGTTTCTTTCTG+AGG 0.437247 4_4:+50115529 None:intergenic
AAATACATCTTCTGTGGGTT+CGG 0.438355 4_4:-50113784 Msa0685860:CDS
ACTTTCATATTGTAAAATAG+TGG 0.440552 4_4:-50115824 Msa0685860:CDS
GTGTATCTTCCACTGAGAGT+TGG 0.442393 4_4:+50113598 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.446897 4_4:+50113546 None:intergenic
CCATTAGAATCTTCTATCAA+TGG 0.452110 4_4:+50117886 None:intergenic
GGGGAGTCTTGTGTTGGAAA+AGG 0.452651 4_4:-50116214 Msa0685860:CDS
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_4:+50113825 None:intergenic
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_4:+50114931 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.459043 4_4:+50114766 None:intergenic
GAATCAACTTACATTGCAAA+AGG 0.459172 4_4:+50113525 None:intergenic
TATGGATACTGCATCAGTAT+TGG 0.460775 4_4:+50113716 None:intergenic
GTATTTGTTGCTGGTGCTAC+CGG 0.461659 4_4:-50117430 Msa0685860:CDS
ACTGAAGATACTTTATTTGG+TGG 0.462350 4_4:-50115991 Msa0685860:CDS
ATTGCTACGGATTCTACTCC+TGG 0.465646 4_4:+50117617 None:intergenic
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_4:-50113658 Msa0685860:CDS
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_4:-50113742 Msa0685860:CDS
TTCCTTCTCACTGGCACCAA+TGG 0.467693 4_4:+50116565 None:intergenic
TTGGAGAAGCCAGAACAGAT+TGG 0.469675 4_4:-50116623 Msa0685860:CDS
TAAAGTATCTTCAGTTGATA+GGG 0.473379 4_4:+50115999 None:intergenic
GGATGGAAGTATGAACTCTT+TGG 0.478979 4_4:+50117793 None:intergenic
TGCTCAGAGAGCTGGTGCAT+TGG 0.480019 4_4:-50117243 Msa0685860:CDS
GGTTGTTCTGTTACTTTCTG+AGG 0.482284 4_4:+50115475 None:intergenic
GTTCATGAAATGTGAGTACT+TGG 0.485043 4_4:+50117662 None:intergenic
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_4:-50113659 Msa0685860:CDS
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_4:-50113743 Msa0685860:CDS
TCTTCCACTGAGAGTTGGGC+TGG 0.488054 4_4:+50113603 None:intergenic
GTCGAAAATTTCCTTCTCAC+TGG 0.495824 4_4:+50116556 None:intergenic
TTCATATTGGTTACTTCACT+GGG 0.496841 4_4:-50116359 Msa0685860:CDS
TCACTAGGCTTAACTGGAGA+AGG 0.498219 4_4:+50115298 None:intergenic
GTAGGCCTCTCCATGCCTCC+AGG 0.501371 4_4:+50116051 None:intergenic
GTGACATTAGCCGAGGGAGC+TGG 0.501670 4_4:+50115574 None:intergenic
AGAGGAGGGAATGGTAGTTG+AGG 0.502856 4_4:+50117737 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_4:+50113810 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_4:+50114916 None:intergenic
TCTTGTTACCAGCATCAACT+AGG 0.506630 4_4:+50116492 None:intergenic
AAAGCGGCTTACGCTGCAAA+AGG 0.509111 4_4:+50115148 None:intergenic
GTAAGGAGTGCTCAGAGAGC+TGG 0.510095 4_4:-50117251 Msa0685860:CDS
GTGGTCTTGACTTTGGCTCA+TGG 0.511247 4_4:+50114773 None:intergenic
ACCTTCCTTCAGACAATCCT+AGG 0.512572 4_4:-50113260 Msa0685860:exon
ATCAATATCCACATCTTCTG+TGG 0.513109 4_4:-50114884 Msa0685860:CDS
TCTACTCCTGGAAGGTGTTG+TGG 0.513273 4_4:+50117629 None:intergenic
TACATTGCAAAAGGTGAAAG+TGG 0.514619 4_4:+50113534 None:intergenic
GAAGACACCCCACAGGATGA+TGG 0.516796 4_4:-50114805 Msa0685860:CDS
CATTGGTATGGCTTGAAGGA+TGG 0.517971 4_4:+50117776 None:intergenic
CTTGGAGCATCTGAAGAACT+AGG 0.518040 4_4:+50115238 None:intergenic
TGTCAATGGCGCAGTTGTCT+CGG 0.519089 4_4:+50115792 None:intergenic
TACATTGCATAAGGTGAAAG+TGG 0.521440 4_4:+50114754 None:intergenic
ATCCACATCTTCTGTGGGTG+AGG 0.521943 4_4:-50114878 Msa0685860:CDS
GCCATGTAATCTATTCGATA+AGG 0.522613 4_4:+50116524 None:intergenic
CTGGAAGGTGTTGTGGTGAA+AGG 0.523075 4_4:+50117636 None:intergenic
GATGGAAGCAACTATGTGAA+TGG 0.524074 4_4:-50113048 Msa0685860:three_prime_UTR
CACATCTTCTGTGGGTGAGG+TGG 0.525593 4_4:-50114875 Msa0685860:CDS
CCCTTACATTCCTTCGCCCA+AGG 0.525837 4_4:-50115731 Msa0685860:intron
ATGCTAGGCACTTCTGCCAC+TGG 0.528403 4_4:+50115502 None:intergenic
TACACCAAAGGAGGATGGAC+AGG 0.532634 4_4:-50113580 Msa0685860:CDS
GGTACAAGTGGAGGGAGTGA+AGG 0.534697 4_4:-50116754 Msa0685860:intron
AATTCAGGTTGCTGAACTCA+TGG 0.535898 4_4:-50115869 Msa0685860:intron
TTTATCTGTTTCTTGTCACT+AGG 0.538287 4_4:+50115283 None:intergenic
CCTTGTCTGATTCCATATGA+AGG 0.538315 4_4:+50113229 None:intergenic
AAGGAAGGTGATGGTGATGC+AGG 0.540221 4_4:+50113274 None:intergenic
CCATTGATAGAAGATTCTAA+TGG 0.541034 4_4:-50117886 Msa0685860:five_prime_UTR
AGACAACAACTTCCTCAAAA+GGG 0.544213 4_4:-50115186 Msa0685860:CDS
TGTAGAGAAGCTTGAAATTG+TGG 0.545007 4_4:-50116654 Msa0685860:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_4:-50113660 Msa0685860:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_4:-50113744 Msa0685860:CDS
ATATGAAGGAGGCAGTTCCT+AGG 0.545779 4_4:+50113243 None:intergenic
TGTTACTCAAAATATGAAGA+TGG 0.547752 4_4:-50113066 Msa0685860:three_prime_UTR
ACTTTCTGAGGAGTAATGCT+AGG 0.547925 4_4:+50115487 None:intergenic
CACTAGGCTTAACTGGAGAA+GGG 0.550734 4_4:+50115299 None:intergenic
GTAATCTATTCGATAAGGTC+CGG 0.552580 4_4:+50116529 None:intergenic
CACCATTGGTGCCAGTGAGA+AGG 0.552835 4_4:-50116567 Msa0685860:CDS
GATAGTGAGACCTGGAGGCA+TGG 0.552896 4_4:-50116061 Msa0685860:CDS
TGAGAAAGCCTCCATTGGTA+TGG 0.554157 4_4:+50117764 None:intergenic
GAGCTCTTATGATATTGCTA+CGG 0.556118 4_4:+50117604 None:intergenic
AGCTCCCTCGGCTAATGTCA+CGG 0.558689 4_4:-50115572 Msa0685860:CDS
GATTCTGTCCATCATCCTGT+GGG 0.562158 4_4:+50114797 None:intergenic
GGAATGTAAGGGCGTTGAGA+AGG 0.562301 4_4:+50115742 None:intergenic
TCATCAAGAAATAAATGGCA+TGG 0.563194 4_4:+50113015 None:intergenic
CTCTCTACGTGTTAGAGAGG+AGG 0.563295 4_4:+50117722 None:intergenic
GTGACTGAGAAAGCCTCCAT+TGG 0.563724 4_4:+50117759 None:intergenic
GATGTGGATATTGATGTAGT+TGG 0.564321 4_4:+50114892 None:intergenic
TGCTGAACTCATGGCAGCCA+TGG 0.565756 4_4:-50115860 Msa0685860:CDS
CTTCCACTGAAAGTTGAGCT+GGG 0.565860 4_4:+50114824 None:intergenic
TGAGTAACAATCCTCCATGT+GGG 0.566650 4_4:+50113080 None:intergenic
AAGCTTGATGGTACAAGTGG+AGG 0.568328 4_4:-50116763 Msa0685860:CDS
TGGAAGGTGTTGTGGTGAAA+GGG 0.568808 4_4:+50117637 None:intergenic
TGGAAGTATGAACTCTTTGG+TGG 0.570655 4_4:+50117796 None:intergenic
TGCACCAAATACATCTTCTG+TGG 0.571071 4_4:-50113790 Msa0685860:CDS
AGCATTAGGGAATGCATCAA+AGG 0.575114 4_4:-50116597 Msa0685860:CDS
AGATTCTGTCCATCATCCTG+TGG 0.575424 4_4:+50114796 None:intergenic
ACCTTATCGAATAGATTACA+TGG 0.577220 4_4:-50116525 Msa0685860:CDS
GAAGAAGCATTGCTAGCAAG+TGG 0.578411 4_4:-50116185 Msa0685860:CDS
TGTCAGTAGTCCAGCTCCCT+CGG 0.580026 4_4:-50115584 Msa0685860:CDS
ATTGAGGAAGTATCAAGTAA+TGG 0.580305 4_4:-50114847 Msa0685860:CDS
GAATCTTCTATCAATGGCAG+TGG 0.580736 4_4:+50117892 None:intergenic
GCATCTGAAGAACTAGGTGT+TGG 0.583270 4_4:+50115244 None:intergenic
TCAATATCCACATCTTCTGT+GGG 0.583412 4_4:-50114883 Msa0685860:CDS
TCTCTACGTGTTAGAGAGGA+GGG 0.583672 4_4:+50117723 None:intergenic
ACGTGTTAGAGAGGAGGGAA+TGG 0.583834 4_4:+50117728 None:intergenic
TTGAAGCTTGATGGTACAAG+TGG 0.587112 4_4:-50116766 Msa0685860:CDS
ACTCACTTGAGAATAGCTGC+AGG 0.587473 4_4:+50116317 None:intergenic
GCTGGTGCTACCGGAAAAGT+TGG 0.589304 4_4:-50117421 Msa0685860:CDS
TTAACTGGAGAAGGGGATGA+CGG 0.590019 4_4:+50115307 None:intergenic
TTCATATTGTAAAATAGTGG+AGG 0.590861 4_4:-50115821 Msa0685860:CDS
ATCCATATCTTCTGTGAGTG+AGG 0.591930 4_4:-50113700 Msa0685860:CDS
GAAGATACACCAAAGGAGGA+TGG 0.594365 4_4:-50113585 Msa0685860:CDS
GAAAGGTTGACATGGCCAGA+AGG 0.599944 4_4:+50117684 None:intergenic
AGCTTGATGGTACAAGTGGA+GGG 0.600932 4_4:-50116762 Msa0685860:CDS
TGGCCCAGCTCAACTTTCAG+TGG 0.601032 4_4:-50114827 Msa0685860:CDS
TATGTGTGGATATCATATCA+TGG 0.601387 4_4:+50117928 None:intergenic
TCCTAGGATTGTCTGAAGGA+AGG 0.603155 4_4:+50113259 None:intergenic
CACCTCACCCACAGAAGATG+TGG 0.603210 4_4:+50114876 None:intergenic
TCAAAGGTGATATGCACCAT+TGG 0.604357 4_4:-50116581 Msa0685860:CDS
GGGTGAGGTGGCCAAGATTG+AGG 0.606108 4_4:-50114863 Msa0685860:CDS
TTGTTCTGTTTCTTTCTGAG+GGG 0.606733 4_4:+50115531 None:intergenic
TTGAGTAACAATCCTCCATG+TGG 0.607190 4_4:+50113079 None:intergenic
CATCCTTCAAGCCATACCAA+TGG 0.607942 4_4:-50117775 Msa0685860:exon
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_4:-50113664 Msa0685860:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_4:-50113748 Msa0685860:CDS
AGTCTTGTGTTGGAAAAGGA+AGG 0.608353 4_4:-50116210 Msa0685860:CDS
CCTTCAAGCCATACCAATGG+AGG 0.608411 4_4:-50117772 Msa0685860:exon
AACAGAACAACCAGAACCAG+TGG 0.608935 4_4:-50115518 Msa0685860:CDS
CCTTCATATGGAATCAGACA+AGG 0.608962 4_4:-50113229 Msa0685860:intron
GTGCAATCCTTTGCTATGTG+TGG 0.609108 4_4:+50117914 None:intergenic
TGCTTCCGTGACATTAGCCG+AGG 0.609832 4_4:+50115567 None:intergenic
AACAACTTCCTCAAAAGGGA+AGG 0.609863 4_4:-50115182 Msa0685860:CDS
GAAGTACTTACCTTGGGCGA+AGG 0.612425 4_4:+50115721 None:intergenic
GTTTGCTTGTAAGCATCAGT+AGG 0.613470 4_4:+50116033 None:intergenic
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_4:-50113663 Msa0685860:CDS
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_4:-50113747 Msa0685860:CDS
GCACCAAATACATCTTCTGT+GGG 0.619349 4_4:-50113789 Msa0685860:CDS
ATTGATGCAGTATCAAGCAA+TGG 0.622304 4_4:-50113627 Msa0685860:CDS
CTACGGATTCTACTCCTGGA+AGG 0.622955 4_4:+50117621 None:intergenic
AAGTTCGGGATTCTTAGCCA+TGG 0.624516 4_4:+50115843 None:intergenic
AAGTTGGTTCAAGAACAGTC+AGG 0.626940 4_4:-50117405 Msa0685860:intron
TTCAGTGGAAGACACCCCAC+AGG 0.630088 4_4:-50114812 Msa0685860:CDS
AGTTTATGTAGCAACCCACA+TGG 0.631927 4_4:-50113094 Msa0685860:three_prime_UTR
CTCCTCTCTAACACGTAGAG+AGG 0.634813 4_4:-50117721 Msa0685860:CDS
GGAAGTATGAACTCTTTGGT+GGG 0.635936 4_4:+50117797 None:intergenic
CCTTGGGCGAAGGAATGTAA+GGG 0.638040 4_4:+50115731 None:intergenic
ATGATATCCACACATAGCAA+AGG 0.638185 4_4:-50117921 Msa0685860:five_prime_UTR
GAAGGTGATGGTGATGCAGG+AGG 0.640994 4_4:+50113277 None:intergenic
GTATTTGGTGCATTAGGAGA+TGG 0.641520 4_4:+50113801 None:intergenic
ACTAGGCTTAACTGGAGAAG+GGG 0.642549 4_4:+50115300 None:intergenic
TGGACCAGCCCAACTCTCAG+TGG 0.643488 4_4:-50113607 Msa0685860:CDS
AGTGGAAGATACACCAAAGG+AGG 0.647962 4_4:-50113589 Msa0685860:CDS
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_4:+50113813 None:intergenic
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_4:+50114919 None:intergenic
TGAGACCTGGAGGCATGGAG+AGG 0.657345 4_4:-50116056 Msa0685860:CDS
AGCCTCTCTACGTGTTAGAG+AGG 0.660056 4_4:+50117719 None:intergenic
TGAAATGTGAGTACTTGGAA+AGG 0.660451 4_4:+50117667 None:intergenic
CAGTTCCTAGGATTGTCTGA+AGG 0.661742 4_4:+50113255 None:intergenic
TACGCAGTATAAGGAGAAAG+CGG 0.663306 4_4:+50115433 None:intergenic
ACTGGAGAAGGGGATGACGG+TGG 0.666454 4_4:+50115310 None:intergenic
CTCAGTGGAAGATACACCAA+AGG 0.671918 4_4:-50113592 Msa0685860:CDS
GTAGTTGGTGCATTAGGAGA+TGG 0.677079 4_4:+50114907 None:intergenic
GATTGTCTGAAGGAAGGTGA+TGG 0.681966 4_4:+50113265 None:intergenic
GCTTCCGTGACATTAGCCGA+GGG 0.683279 4_4:+50115568 None:intergenic
TGTCTGATTCCATATGAAGG+AGG 0.693470 4_4:+50113232 None:intergenic
AACAGAACAACCGAAACCAG+TGG 0.697375 4_4:-50115464 Msa0685860:CDS
TTTCAGATAGTGAGACCTGG+AGG 0.699888 4_4:-50116066 Msa0685860:intron
ATTCTGTCCATCATCCTGTG+GGG 0.704456 4_4:+50114798 None:intergenic
AGTACTTGGAAAGGTTGACA+TGG 0.719280 4_4:+50117676 None:intergenic
TTATGTAGCAACCCACATGG+AGG 0.728794 4_4:-50113091 Msa0685860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAACTTCTTAAAA+CGG - chr4_4:50113895-50113914 Msa0685860:intron 10.0%
!! AACATAATAATAAGATAATT+AGG + chr4_4:50114636-50114655 None:intergenic 10.0%
!!! ATTTAAGATATATAGATATA+TGG - chr4_4:50114829-50114848 Msa0685860:CDS 10.0%
!! TTTCTATAACAAATACAATA+AGG + chr4_4:50113766-50113785 None:intergenic 15.0%
!!! TCTATTTTTGTAGTTTATTT+TGG - chr4_4:50114503-50114522 Msa0685860:intron 15.0%
!!! CTATTTTTGTAGTTTATTTT+GGG - chr4_4:50114504-50114523 Msa0685860:intron 15.0%
!!! TATTTTTGTAGTTTATTTTG+GGG - chr4_4:50114505-50114524 Msa0685860:intron 15.0%
!!! TATTTTACAATATGAAAGTT+CGG + chr4_4:50114913-50114932 None:intergenic 15.0%
!!! CATAATTGTGATATATTTTT+TGG - chr4_4:50117596-50117615 Msa0685860:CDS 15.0%
!! GATTTAACTAATGGAATATT+TGG - chr4_4:50113550-50113569 Msa0685860:CDS 20.0%
!!! TAGCTTATATGAAAACATTT+TGG - chr4_4:50113740-50113759 Msa0685860:CDS 20.0%
!!! ATTTTACAATATGAAAGTTC+GGG + chr4_4:50114912-50114931 None:intergenic 20.0%
!! ACTTTCATATTGTAAAATAG+TGG - chr4_4:50114914-50114933 Msa0685860:CDS 20.0%
!! TATATACCAACTTAGTTATT+TGG + chr4_4:50115383-50115402 None:intergenic 20.0%
!! AAGAACTAAGAAAAAGTTAA+AGG + chr4_4:50116025-50116044 None:intergenic 20.0%
!!! ACAAACATTTTACAATTTCA+GGG + chr4_4:50116382-50116401 None:intergenic 20.0%
!!! CTAATTTGCATATGAAATTT+AGG + chr4_4:50116589-50116608 None:intergenic 20.0%
!!! AACAACATTTTACAATTTCA+TGG - chr4_4:50116717-50116736 Msa0685860:intron 20.0%
!! GAAGAAATAAGAAAAATTGA+TGG + chr4_4:50117246-50117265 None:intergenic 20.0%
!! AAAAGTCATCAAGAAATAAA+TGG + chr4_4:50117731-50117750 None:intergenic 20.0%
!! TTGCAATTTAAATAAGGAAA+AGG - chr4_4:50117811-50117830 Msa0685860:five_prime_UTR 20.0%
!!! TGAAAGTACTATAACATAAA+TGG + chr4_4:50117861-50117880 None:intergenic 20.0%
! TACATGTTTAACATTCATAC+AGG + chr4_4:50113219-50113238 None:intergenic 25.0%
! CATGTATATATCTTCATTCA+AGG - chr4_4:50113233-50113252 Msa0685860:three_prime_UTR 25.0%
! AAATACTAAGTTATCATCCT+TGG + chr4_4:50113294-50113313 None:intergenic 25.0%
! AACAAAGTTACTATCTCAAA+AGG + chr4_4:50113397-50113416 None:intergenic 25.0%
!! GATTATTTGAGTTTATCTAC+TGG - chr4_4:50113572-50113591 Msa0685860:CDS 25.0%
! AATAAGATGAAAACAGCTTA+TGG + chr4_4:50113653-50113672 None:intergenic 25.0%
!!! TCTTATTTTCATATGCTCAT+CGG - chr4_4:50113666-50113685 Msa0685860:CDS 25.0%
! AACTTCTTAAAACGGATAAT+TGG - chr4_4:50113903-50113922 Msa0685860:intron 25.0%
!!! GTTTCAATGCTATTTGTTTT+AGG - chr4_4:50114286-50114305 Msa0685860:intron 25.0%
! CAATATGAAGTGATTTACTT+TGG + chr4_4:50114368-50114387 None:intergenic 25.0%
! CAAAGTAAATCACTTCATAT+TGG - chr4_4:50114366-50114385 Msa0685860:intron 25.0%
!! TAAAGTATCTTCAGTTGATA+GGG + chr4_4:50114742-50114761 None:intergenic 25.0%
!! ATAAAGTATCTTCAGTTGAT+AGG + chr4_4:50114743-50114762 None:intergenic 25.0%
! TCAACTGAAGATACTTTATT+TGG - chr4_4:50114744-50114763 Msa0685860:intron 25.0%
! TTCATATTGTAAAATAGTGG+AGG - chr4_4:50114917-50114936 Msa0685860:CDS 25.0%
! CGTCACAAAATGTTTATATA+TGG + chr4_4:50115042-50115061 None:intergenic 25.0%
! CAAATTAAAGAGGTTTAGAT+GGG + chr4_4:50115668-50115687 None:intergenic 25.0%
! AAATCAACTTACATTGCATA+AGG + chr4_4:50115996-50116015 None:intergenic 25.0%
! CTTTCTTCTATAATAAGGAA+TGG + chr4_4:50116061-50116080 None:intergenic 25.0%
! CTTATTATAGAAGAAAGAGA+GGG - chr4_4:50116064-50116083 Msa0685860:intron 25.0%
! TTATTATAGAAGAAAGAGAG+GGG - chr4_4:50116065-50116084 Msa0685860:intron 25.0%
!!! ATAACTGTGACTTTGATTTT+TGG - chr4_4:50116124-50116143 Msa0685860:intron 25.0%
!! GACAAACATTTTACAATTTC+AGG + chr4_4:50116383-50116402 None:intergenic 25.0%
!! CTAATTTGCCTATGAAATTT+AGG - chr4_4:50116511-50116530 Msa0685860:CDS 25.0%
! TAAAAAAATTGTCCTTGAGA+TGG - chr4_4:50116563-50116582 Msa0685860:CDS 25.0%
! TTACGAAAGAAGTTAACTAA+GGG - chr4_4:50116685-50116704 Msa0685860:intron 25.0%
! GTATTTGTCAATTTGCAAAA+AGG - chr4_4:50116742-50116761 Msa0685860:intron 25.0%
!!! AGTATTTTGACCAAATTTTG+AGG - chr4_4:50116769-50116788 Msa0685860:CDS 25.0%
! TATGTAAGATCAAAACTTTG+TGG - chr4_4:50116828-50116847 Msa0685860:intron 25.0%
!! AAGAAAAATTGATGGTAAGT+TGG + chr4_4:50117238-50117257 None:intergenic 25.0%
! AATAACGAATGAAGAATCTT+TGG + chr4_4:50117270-50117289 None:intergenic 25.0%
!!! ATATATTTTTTGGAGCGAAT+AGG - chr4_4:50117606-50117625 Msa0685860:CDS 25.0%
! TGTTACTCAAAATATGAAGA+TGG - chr4_4:50117672-50117691 Msa0685860:CDS 25.0%
!!! TATTTCTTGATGACTTTTTG+AGG - chr4_4:50117733-50117752 Msa0685860:CDS 25.0%
!! CCTTATTTAAATTGCAACAT+GGG + chr4_4:50117808-50117827 None:intergenic 25.0%
!! TCCTTATTTAAATTGCAACA+TGG + chr4_4:50117809-50117828 None:intergenic 25.0%
TATGTGTGGATATCATATCA+TGG + chr4_4:50112813-50112832 None:intergenic 30.0%
CCATTAGAATCTTCTATCAA+TGG + chr4_4:50112855-50112874 None:intergenic 30.0%
CCATTGATAGAAGATTCTAA+TGG - chr4_4:50112852-50112871 Msa0685860:three_prime_UTR 30.0%
! GATAACTTAGTATTTGTTGC+TGG - chr4_4:50113299-50113318 Msa0685860:intron 30.0%
!! CTTATTTTCATATGCTCATC+GGG - chr4_4:50113667-50113686 Msa0685860:CDS 30.0%
! TACTATTAGTCATGTCACTT+AGG + chr4_4:50113877-50113896 None:intergenic 30.0%
GTTAAACAATTGAAGCTTGA+TGG - chr4_4:50113963-50113982 Msa0685860:intron 30.0%
GTCAATGAGAAAAACATTCT+TGG + chr4_4:50114014-50114033 None:intergenic 30.0%
! GTTGGATAACAGAATGTTTT+TGG - chr4_4:50114048-50114067 Msa0685860:intron 30.0%
TGAAATTGTGGAATGTGATT+TGG - chr4_4:50114096-50114115 Msa0685860:intron 30.0%
! AAGGAAATTTTCGACATTAC+CGG - chr4_4:50114190-50114209 Msa0685860:intron 30.0%
ACCTTATCGAATAGATTACA+TGG - chr4_4:50114213-50114232 Msa0685860:intron 30.0%
! TTCATATTGGTTACTTCACT+GGG - chr4_4:50114379-50114398 Msa0685860:intron 30.0%
! ACTGAAGATACTTTATTTGG+TGG - chr4_4:50114747-50114766 Msa0685860:intron 30.0%
TTTACATGATAAGTACCTGA+AGG + chr4_4:50114785-50114804 None:intergenic 30.0%
!! TATATGGAAGTACTTACCTT+GGG + chr4_4:50115026-50115045 None:intergenic 30.0%
!! ATATATGGAAGTACTTACCT+TGG + chr4_4:50115027-50115046 None:intergenic 30.0%
AACAGGAATGTTAAACTACT+AGG + chr4_4:50115085-50115104 None:intergenic 30.0%
CATTCCTGTTAATTGATCTA+CGG - chr4_4:50115095-50115114 Msa0685860:intron 30.0%
AAAACCGTAGATCAATTAAC+AGG + chr4_4:50115102-50115121 None:intergenic 30.0%
! AATTGATCTACGGTTTTCTT+TGG - chr4_4:50115105-50115124 Msa0685860:intron 30.0%
GTCAACAAATATTAGCAATC+TGG + chr4_4:50115333-50115352 None:intergenic 30.0%
! GTTGACAGTCAATTTTTATG+TGG - chr4_4:50115347-50115366 Msa0685860:intron 30.0%
!! GTCAATTTTTATGTGGACTA+TGG - chr4_4:50115354-50115373 Msa0685860:intron 30.0%
!! AATTTTTATGTGGACTATGG+AGG - chr4_4:50115357-50115376 Msa0685860:intron 30.0%
! TTTATCTGTTTCTTGTCACT+AGG + chr4_4:50115458-50115477 None:intergenic 30.0%
!! TCTATTTCTGGAATGTTACT+TGG + chr4_4:50115521-50115540 None:intergenic 30.0%
TGAGAAATGACATCTATTTC+TGG + chr4_4:50115533-50115552 None:intergenic 30.0%
CCAAATTAAAGAGGTTTAGA+TGG + chr4_4:50115669-50115688 None:intergenic 30.0%
CCATCTAAACCTCTTTAATT+TGG - chr4_4:50115666-50115685 Msa0685860:intron 30.0%
!! TGCTAAAGTAGTTGATAACA+AGG + chr4_4:50115721-50115740 None:intergenic 30.0%
GGAAAACAAACCACAAATTT+AGG + chr4_4:50115760-50115779 None:intergenic 30.0%
GCAGGTATATAAAATACACA+AGG + chr4_4:50115781-50115800 None:intergenic 30.0%
!! ATTGAGGAAGTATCAAGTAA+TGG - chr4_4:50115891-50115910 Msa0685860:intron 30.0%
CCTCTCTTTCTTCTATAATA+AGG + chr4_4:50116066-50116085 None:intergenic 30.0%
CCTTATTATAGAAGAAAGAG+AGG - chr4_4:50116063-50116082 Msa0685860:CDS 30.0%
AAGTGAGTGAATAAGTCTTA+TGG - chr4_4:50116156-50116175 Msa0685860:intron 30.0%
TGGTAATTGATGAATGTACT+AGG - chr4_4:50116176-50116195 Msa0685860:CDS 30.0%
ATTGATGAATGTACTAGGTT+AGG - chr4_4:50116181-50116200 Msa0685860:CDS 30.0%
TAGTGCGAAATTTACTATTG+TGG - chr4_4:50116268-50116287 Msa0685860:intron 30.0%
TTCCAAATTCGCAAAAATCA+GGG + chr4_4:50116353-50116372 None:intergenic 30.0%
TTTCCAAATTCGCAAAAATC+AGG + chr4_4:50116354-50116373 None:intergenic 30.0%
! ACTGTAAACTTTTAGTGGTA+GGG - chr4_4:50116414-50116433 Msa0685860:intron 30.0%
ACATTGATGTAGGATTAACA+TGG + chr4_4:50116477-50116496 None:intergenic 30.0%
!! TTCATAGGCAAATTAGTCTT+TGG + chr4_4:50116507-50116526 None:intergenic 30.0%
TCTGAAGACCTAAATTTCAT+AGG + chr4_4:50116522-50116541 None:intergenic 30.0%
TTTAGTGATTGCAATTGTGA+AGG + chr4_4:50116547-50116566 None:intergenic 30.0%
TAGTTAACTTCTTTCGTAAG+AGG + chr4_4:50116684-50116703 None:intergenic 30.0%
CTTACGAAAGAAGTTAACTA+AGG - chr4_4:50116684-50116703 Msa0685860:intron 30.0%
TTTGTCAATTTGCAAAAAGG+AGG - chr4_4:50116745-50116764 Msa0685860:intron 30.0%
TTGTCAATTTGCAAAAAGGA+GGG - chr4_4:50116746-50116765 Msa0685860:intron 30.0%
AAAAACCTGTCCTCAAAATT+TGG + chr4_4:50116782-50116801 None:intergenic 30.0%
!! GGTTTGTTTTTCTTGTATAC+AGG - chr4_4:50116887-50116906 Msa0685860:intron 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_4:50116982-50117001 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_4:50116983-50117002 None:intergenic 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_4:50116982-50117001 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_4:50116983-50117002 None:intergenic 30.0%
CTTGATACTGCATCAATATT+GGG + chr4_4:50117108-50117127 None:intergenic 30.0%
GAATCAACTTACATTGCAAA+AGG + chr4_4:50117216-50117235 None:intergenic 30.0%
! CTTATGCAAATGAACTTTTC+AGG - chr4_4:50117423-50117442 Msa0685860:CDS 30.0%
!!! AAATGAACTTTTCAGGTATG+AGG - chr4_4:50117430-50117449 Msa0685860:CDS 30.0%
TCATCAAGAAATAAATGGCA+TGG + chr4_4:50117726-50117745 None:intergenic 30.0%
CCCATGTTGCAATTTAAATA+AGG - chr4_4:50117805-50117824 Msa0685860:five_prime_UTR 30.0%
! TTTTCTCATACCTAAAGAGT+GGG + chr4_4:50117895-50117914 None:intergenic 30.0%
! ATTTTCTCATACCTAAAGAG+TGG + chr4_4:50117896-50117915 None:intergenic 30.0%
ATGATATCCACACATAGCAA+AGG - chr4_4:50112817-50112836 Msa0685860:three_prime_UTR 35.0%
TGAAATGTGAGTACTTGGAA+AGG + chr4_4:50113074-50113093 None:intergenic 35.0%
GTTCATGAAATGTGAGTACT+TGG + chr4_4:50113079-50113098 None:intergenic 35.0%
GAGCTCTTATGATATTGCTA+CGG + chr4_4:50113137-50113156 None:intergenic 35.0%
ATCATAAGAGCTCAAGTTTC+AGG - chr4_4:50113144-50113163 Msa0685860:intron 35.0%
TGCTGAGAAAAAAGATTCCA+AGG - chr4_4:50113274-50113293 Msa0685860:CDS 35.0%
! TGTTCTTGAACCAACTTTTC+CGG + chr4_4:50113330-50113349 None:intergenic 35.0%
AATCAAGTTCAGTACTATGG+TGG + chr4_4:50113372-50113391 None:intergenic 35.0%
GTGAATCAAGTTCAGTACTA+TGG + chr4_4:50113375-50113394 None:intergenic 35.0%
AGCTGTGATAGTTTCATTCA+GGG - chr4_4:50113429-50113448 Msa0685860:intron 35.0%
!! CATTGGTTCAGGTAATAGAA+AGG - chr4_4:50113512-50113531 Msa0685860:intron 35.0%
GTAATAGAAAGGTTACTCTG+TGG - chr4_4:50113523-50113542 Msa0685860:intron 35.0%
! TGTGGTGGTGATTTAACTAA+TGG - chr4_4:50113541-50113560 Msa0685860:CDS 35.0%
AGATTGTTTACGAGAGCTTA+CGG - chr4_4:50113609-50113628 Msa0685860:CDS 35.0%
TGTAGAGAAGCTTGAAATTG+TGG - chr4_4:50114084-50114103 Msa0685860:intron 35.0%
AACAGATTGGATCAGCATTA+GGG - chr4_4:50114128-50114147 Msa0685860:intron 35.0%
GTAATCTATTCGATAAGGTC+CGG + chr4_4:50114212-50114231 None:intergenic 35.0%
GCCATGTAATCTATTCGATA+AGG + chr4_4:50114217-50114236 None:intergenic 35.0%
GGTAACAAGAGCTTTCATTA+TGG - chr4_4:50114259-50114278 Msa0685860:intron 35.0%
! CTTCATATTGGTTACTTCAC+TGG - chr4_4:50114378-50114397 Msa0685860:intron 35.0%
TCACTGGGAACAAACAAATT+TGG - chr4_4:50114394-50114413 Msa0685860:intron 35.0%
TCACAATGACTTACTGTGTA+TGG + chr4_4:50114583-50114602 None:intergenic 35.0%
! AGATACTTTATTTGGTGGTC+AGG - chr4_4:50114752-50114771 Msa0685860:intron 35.0%
!! GTTGATAACTCTCTCAATTC+AGG - chr4_4:50114854-50114873 Msa0685860:CDS 35.0%
! TTTGCAAGAAGTTTTTCTGC+AGG + chr4_4:50114972-50114991 None:intergenic 35.0%
! TTGTTCTGTTTCTTTCTGAG+GGG + chr4_4:50115210-50115229 None:intergenic 35.0%
! GTTGTTCTGTTTCTTTCTGA+GGG + chr4_4:50115211-50115230 None:intergenic 35.0%
AGACAACAACTTCCTCAAAA+GGG - chr4_4:50115552-50115571 Msa0685860:CDS 35.0%
!! TAAGCCGCTTTCTAATTTTG+TGG - chr4_4:50115602-50115621 Msa0685860:CDS 35.0%
AGCACCACAAAATTAGAAAG+CGG + chr4_4:50115609-50115628 None:intergenic 35.0%
TCATAGCTGCCAAATTAAAG+AGG + chr4_4:50115678-50115697 None:intergenic 35.0%
!! TCTTTAATTTGGCAGCTATG+AGG - chr4_4:50115677-50115696 Msa0685860:intron 35.0%
! TACTTTAGCACTTTTATCCG+TGG - chr4_4:50115731-50115750 Msa0685860:intron 35.0%
! ACCACAAATTTAGGATACCA+CGG + chr4_4:50115751-50115770 None:intergenic 35.0%
CTTTAAATCAGGATATCTGC+AGG + chr4_4:50115799-50115818 None:intergenic 35.0%
! ATTGATGTAGTTGGTGCATT+AGG + chr4_4:50115840-50115859 None:intergenic 35.0%
GATGTGGATATTGATGTAGT+TGG + chr4_4:50115849-50115868 None:intergenic 35.0%
ATCAATATCCACATCTTCTG+TGG - chr4_4:50115854-50115873 Msa0685860:CDS 35.0%
TCAATATCCACATCTTCTGT+GGG - chr4_4:50115855-50115874 Msa0685860:CDS 35.0%
ACTTGATACTTCCTCAATCT+TGG + chr4_4:50115889-50115908 None:intergenic 35.0%
TACATTGCATAAGGTGAAAG+TGG + chr4_4:50115987-50116006 None:intergenic 35.0%
!! AATAAGGAATGGAGAGCATT+TGG + chr4_4:50116050-50116069 None:intergenic 35.0%
!! TGATTAAGCCAAAAGCATCA+AGG - chr4_4:50116222-50116241 Msa0685860:CDS 35.0%
TACTGATGCTTACAATTTCG+AGG + chr4_4:50116322-50116341 None:intergenic 35.0%
! GTCTCACTGTAAACTTTTAG+TGG - chr4_4:50116409-50116428 Msa0685860:intron 35.0%
! CACTGTAAACTTTTAGTGGT+AGG - chr4_4:50116413-50116432 Msa0685860:intron 35.0%
TGACATGTTAACTGAATACG+TGG - chr4_4:50116446-50116465 Msa0685860:intron 35.0%
ATGAAATTTAGGCCATCTCA+AGG + chr4_4:50116578-50116597 None:intergenic 35.0%
!! TTTGACCAAATTTTGAGGAC+AGG - chr4_4:50116774-50116793 Msa0685860:CDS 35.0%
AAGATCAAAACTTTGTGGAC+AGG - chr4_4:50116833-50116852 Msa0685860:intron 35.0%
TTCGTGGTATCAAAACTTTG+TGG - chr4_4:50116866-50116885 Msa0685860:intron 35.0%
!! GAAGATGTATTTGGTGCATT+AGG + chr4_4:50116946-50116965 None:intergenic 35.0%
AAATACATCTTCTGTGGGTT+CGG - chr4_4:50116954-50116973 Msa0685860:intron 35.0%
ATGGATACTGCATCAGTATT+GGG + chr4_4:50117024-50117043 None:intergenic 35.0%
TATGGATACTGCATCAGTAT+TGG + chr4_4:50117025-50117044 None:intergenic 35.0%
GCTTGATACTGCATCAATAT+TGG + chr4_4:50117109-50117128 None:intergenic 35.0%
ATTGATGCAGTATCAAGCAA+TGG - chr4_4:50117111-50117130 Msa0685860:intron 35.0%
TACATTGCAAAAGGTGAAAG+TGG + chr4_4:50117207-50117226 None:intergenic 35.0%
ACCATCCGATATCAATCAAA+CGG + chr4_4:50117370-50117389 None:intergenic 35.0%
GAATCTTCTATCAATGGCAG+TGG + chr4_4:50112849-50112868 None:intergenic 40.0%
! GGAAGTATGAACTCTTTGGT+GGG + chr4_4:50112944-50112963 None:intergenic 40.0%
! TGGAAGTATGAACTCTTTGG+TGG + chr4_4:50112945-50112964 None:intergenic 40.0%
! GGATGGAAGTATGAACTCTT+TGG + chr4_4:50112948-50112967 None:intergenic 40.0%
AGTACTTGGAAAGGTTGACA+TGG + chr4_4:50113065-50113084 None:intergenic 40.0%
! AAGTTGGTTCAAGAACAGTC+AGG - chr4_4:50113333-50113352 Msa0685860:intron 40.0%
GAGCTGTGATAGTTTCATTC+AGG - chr4_4:50113428-50113447 Msa0685860:intron 40.0%
TTCAGGGAGCTTATAAAGCT+TGG - chr4_4:50113445-50113464 Msa0685860:intron 40.0%
ATAGAAAGGTTACTCTGTGG+TGG - chr4_4:50113526-50113545 Msa0685860:intron 40.0%
! TTGAAGCTTGATGGTACAAG+TGG - chr4_4:50113972-50113991 Msa0685860:intron 40.0%
TGACAAAAATGCTGCTGTGT+TGG - chr4_4:50114030-50114049 Msa0685860:intron 40.0%
TTTCAAGCTTCTCTACAGCT+GGG + chr4_4:50114081-50114100 None:intergenic 40.0%
ATTTCAAGCTTCTCTACAGC+TGG + chr4_4:50114082-50114101 None:intergenic 40.0%
AATGCTGATCCAATCTGTTC+TGG + chr4_4:50114127-50114146 None:intergenic 40.0%
GAACAGATTGGATCAGCATT+AGG - chr4_4:50114127-50114146 Msa0685860:intron 40.0%
AGCATTAGGGAATGCATCAA+AGG - chr4_4:50114141-50114160 Msa0685860:intron 40.0%
TCAAAGGTGATATGCACCAT+TGG - chr4_4:50114157-50114176 Msa0685860:intron 40.0%
GTCGAAAATTTCCTTCTCAC+TGG + chr4_4:50114185-50114204 None:intergenic 40.0%
!! AGCATCAACTAGGTTTTTGG+TGG + chr4_4:50114239-50114258 None:intergenic 40.0%
! ACCAAAAACCTAGTTGATGC+TGG - chr4_4:50114238-50114257 Msa0685860:intron 40.0%
! ACCAGCATCAACTAGGTTTT+TGG + chr4_4:50114242-50114261 None:intergenic 40.0%
TCTTGTTACCAGCATCAACT+AGG + chr4_4:50114249-50114268 None:intergenic 40.0%
!! TATTTTGGGGAGTCTTGTGT+TGG - chr4_4:50114518-50114537 Msa0685860:intron 40.0%
! AGTCTTGTGTTGGAAAAGGA+AGG - chr4_4:50114528-50114547 Msa0685860:intron 40.0%
! TCTTTTCAGATAGTGAGACC+TGG - chr4_4:50114669-50114688 Msa0685860:intron 40.0%
GTTTGCTTGTAAGCATCAGT+AGG + chr4_4:50114708-50114727 None:intergenic 40.0%
!! AATTCAGGTTGCTGAACTCA+TGG - chr4_4:50114869-50114888 Msa0685860:CDS 40.0%
! AGTTTTTCTGCAGGTGTCAA+TGG + chr4_4:50114963-50114982 None:intergenic 40.0%
ATGTTAAACTACTAGGCAGG+AGG + chr4_4:50115078-50115097 None:intergenic 40.0%
GGAATGTTAAACTACTAGGC+AGG + chr4_4:50115081-50115100 None:intergenic 40.0%
! GATCTACGGTTTTCTTTGGA+AGG - chr4_4:50115109-50115128 Msa0685860:intron 40.0%
! TCTTTCTGAGGGGAAATACT+AGG + chr4_4:50115200-50115219 None:intergenic 40.0%
! GGTTGTTCTGTTTCTTTCTG+AGG + chr4_4:50115212-50115231 None:intergenic 40.0%
! ACTTTCTGAGGAGTAATGCT+AGG + chr4_4:50115254-50115273 None:intergenic 40.0%
!! GGTTGTTCTGTTACTTTCTG+AGG + chr4_4:50115266-50115285 None:intergenic 40.0%
TACGCAGTATAAGGAGAAAG+CGG + chr4_4:50115308-50115327 None:intergenic 40.0%
! AATCTGGCTTACGCAGTATA+AGG + chr4_4:50115317-50115336 None:intergenic 40.0%
TGGAGGCCAAATAACTAAGT+TGG - chr4_4:50115374-50115393 Msa0685860:intron 40.0%
TTCTTGTCACTAGGCTTAAC+TGG + chr4_4:50115449-50115468 None:intergenic 40.0%
CAGACAACAACTTCCTCAAA+AGG - chr4_4:50115551-50115570 Msa0685860:CDS 40.0%
AACAACTTCCTCAAAAGGGA+AGG - chr4_4:50115556-50115575 Msa0685860:CDS 40.0%
!! GTTGATAACAAGGTATCTGC+AGG + chr4_4:50115711-50115730 None:intergenic 40.0%
TCCGTGGTATCCTAAATTTG+TGG - chr4_4:50115747-50115766 Msa0685860:CDS 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG + chr4_4:50115810-50115829 None:intergenic 40.0%
TATAGAAGAAAGAGAGGGGA+TGG - chr4_4:50116069-50116088 Msa0685860:intron 40.0%
! CCATGAATCCTTGATGCTTT+TGG + chr4_4:50116233-50116252 None:intergenic 40.0%
!! CCAAAAGCATCAAGGATTCA+TGG - chr4_4:50116230-50116249 Msa0685860:intron 40.0%
! GTCCCTGATTTTTGCGAATT+TGG - chr4_4:50116348-50116367 Msa0685860:CDS 40.0%
!! AGGCAAATTAGTCTTTGGTG+TGG + chr4_4:50116502-50116521 None:intergenic 40.0%
CAAATTAGCTCCTAGTGAGT+TGG - chr4_4:50116601-50116620 Msa0685860:CDS 40.0%
!! TGCACTTTGAAACCACATCA+AGG + chr4_4:50116627-50116646 None:intergenic 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG + chr4_4:50115810-50115829 None:intergenic 40.0%
!! GTATTTGGTGCATTAGGAGA+TGG + chr4_4:50116940-50116959 None:intergenic 40.0%
TGCACCAAATACATCTTCTG+TGG - chr4_4:50116948-50116967 Msa0685860:intron 40.0%
GCACCAAATACATCTTCTGT+GGG - chr4_4:50116949-50116968 Msa0685860:intron 40.0%
GAACCCACAGAAGATGTATT+TGG + chr4_4:50116955-50116974 None:intergenic 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_4:50116990-50117009 Msa0685860:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_4:50116991-50117010 Msa0685860:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_4:50116995-50117014 Msa0685860:intron 40.0%
ATCCATATCTTCTGTGAGTG+AGG - chr4_4:50117038-50117057 Msa0685860:intron 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_4:50116990-50117009 Msa0685860:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_4:50116991-50117010 Msa0685860:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_4:50116995-50117014 Msa0685860:intron 40.0%
TGTATCTTCCACTGAGAGTT+GGG + chr4_4:50117142-50117161 None:intergenic 40.0%
GGAAGCCGTTTGATTGATAT+CGG - chr4_4:50117362-50117381 Msa0685860:intron 40.0%
TGTCTGATTCCATATGAAGG+AGG + chr4_4:50117509-50117528 None:intergenic 40.0%
CCTTGTCTGATTCCATATGA+AGG + chr4_4:50117512-50117531 None:intergenic 40.0%
CCTTCATATGGAATCAGACA+AGG - chr4_4:50117509-50117528 Msa0685860:intron 40.0%
ATTATGCACACTACGTACAC+TGG - chr4_4:50117570-50117589 Msa0685860:intron 40.0%
AGTTTATGTAGCAACCCACA+TGG - chr4_4:50117644-50117663 Msa0685860:CDS 40.0%
TGAGTAACAATCCTCCATGT+GGG + chr4_4:50117661-50117680 None:intergenic 40.0%
TTGAGTAACAATCCTCCATG+TGG + chr4_4:50117662-50117681 None:intergenic 40.0%
GATGGAAGCAACTATGTGAA+TGG - chr4_4:50117690-50117709 Msa0685860:CDS 40.0%
TTTCATGTTGCCCACTCTTT+AGG - chr4_4:50117882-50117901 Msa0685860:five_prime_UTR 40.0%
! GTGCAATCCTTTGCTATGTG+TGG + chr4_4:50112827-50112846 None:intergenic 45.0%
CATTGGTATGGCTTGAAGGA+TGG + chr4_4:50112965-50112984 None:intergenic 45.0%
CATCCTTCAAGCCATACCAA+TGG - chr4_4:50112963-50112982 Msa0685860:three_prime_UTR 45.0%
TGAGAAAGCCTCCATTGGTA+TGG + chr4_4:50112977-50112996 None:intergenic 45.0%
TCTCTACGTGTTAGAGAGGA+GGG + chr4_4:50113018-50113037 None:intergenic 45.0%
!! TGGAAGGTGTTGTGGTGAAA+GGG + chr4_4:50113104-50113123 None:intergenic 45.0%
ATTGCTACGGATTCTACTCC+TGG + chr4_4:50113124-50113143 None:intergenic 45.0%
! GAGCTCAAGTTTCAGGTGAT+AGG - chr4_4:50113151-50113170 Msa0685860:intron 45.0%
!! GTATTTGTTGCTGGTGCTAC+CGG - chr4_4:50113308-50113327 Msa0685860:intron 45.0%
!!! CTTGGTTTTGAAGTCAGAGC+TGG - chr4_4:50113463-50113482 Msa0685860:intron 45.0%
TTGAAGTCAGAGCTGGAGTA+AGG - chr4_4:50113470-50113489 Msa0685860:intron 45.0%
ATCGGGATAAACCAACAACC+AGG - chr4_4:50113684-50113703 Msa0685860:CDS 45.0%
! AAGCTTGATGGTACAAGTGG+AGG - chr4_4:50113975-50113994 Msa0685860:intron 45.0%
! AGCTTGATGGTACAAGTGGA+GGG - chr4_4:50113976-50113995 Msa0685860:intron 45.0%
TTGGAGAAGCCAGAACAGAT+TGG - chr4_4:50114115-50114134 Msa0685860:intron 45.0%
ACTCACTTGAGAATAGCTGC+AGG + chr4_4:50114424-50114443 None:intergenic 45.0%
!! GAAGAAGCATTGCTAGCAAG+TGG - chr4_4:50114553-50114572 Msa0685860:intron 45.0%
TTTCAGATAGTGAGACCTGG+AGG - chr4_4:50114672-50114691 Msa0685860:intron 45.0%
AAGTTCGGGATTCTTAGCCA+TGG + chr4_4:50114898-50114917 None:intergenic 45.0%
!! CGGTTTTCTTTGGAAGGTAC+AGG - chr4_4:50115115-50115134 Msa0685860:intron 45.0%
AACAGAACAACCAGAACCAG+TGG - chr4_4:50115220-50115239 Msa0685860:CDS 45.0%
AACAGAACAACCGAAACCAG+TGG - chr4_4:50115274-50115293 Msa0685860:CDS 45.0%
TTAACTGGAGAAGGGGATGA+CGG + chr4_4:50115434-50115453 None:intergenic 45.0%
ACTAGGCTTAACTGGAGAAG+GGG + chr4_4:50115441-50115460 None:intergenic 45.0%
CACTAGGCTTAACTGGAGAA+GGG + chr4_4:50115442-50115461 None:intergenic 45.0%
TCACTAGGCTTAACTGGAGA+AGG + chr4_4:50115443-50115462 None:intergenic 45.0%
GCATCTGAAGAACTAGGTGT+TGG + chr4_4:50115497-50115516 None:intergenic 45.0%
! CTTGGAGCATCTGAAGAACT+AGG + chr4_4:50115503-50115522 None:intergenic 45.0%
! AAGAGACTCCTTCCCTTTTG+AGG + chr4_4:50115567-50115586 None:intergenic 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_4:50115822-50115841 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_4:50115825-50115844 None:intergenic 45.0%
! GTAGTTGGTGCATTAGGAGA+TGG + chr4_4:50115834-50115853 None:intergenic 45.0%
CTTCCACTGAAAGTTGAGCT+GGG + chr4_4:50115917-50115936 None:intergenic 45.0%
TCTTCCACTGAAAGTTGAGC+TGG + chr4_4:50115918-50115937 None:intergenic 45.0%
ATTCTGTCCATCATCCTGTG+GGG + chr4_4:50115943-50115962 None:intergenic 45.0%
GATTCTGTCCATCATCCTGT+GGG + chr4_4:50115944-50115963 None:intergenic 45.0%
AGATTCTGTCCATCATCCTG+TGG + chr4_4:50115945-50115964 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_4:50115975-50115994 None:intergenic 45.0%
GATAGCTGTTCAGGACACAT+TGG - chr4_4:50116095-50116114 Msa0685860:intron 45.0%
GACAGGTTTAGCACAATTCG+TGG - chr4_4:50116850-50116869 Msa0685860:intron 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_4:50115822-50115841 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_4:50115825-50115844 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_4:50116994-50117013 Msa0685860:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_4:50116996-50117015 Msa0685860:intron 45.0%
CACCTCACTCACAGAAGATA+TGG + chr4_4:50117043-50117062 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_4:50116994-50117013 Msa0685860:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_4:50116996-50117015 Msa0685860:intron 45.0%
GTGTATCTTCCACTGAGAGT+TGG + chr4_4:50117143-50117162 None:intergenic 45.0%
CTCAGTGGAAGATACACCAA+AGG - chr4_4:50117146-50117165 Msa0685860:intron 45.0%
AGTGGAAGATACACCAAAGG+AGG - chr4_4:50117149-50117168 Msa0685860:intron 45.0%
GAAGATACACCAAAGGAGGA+TGG - chr4_4:50117153-50117172 Msa0685860:intron 45.0%
! GTGGTCTTGACTTTGGTTCA+TGG + chr4_4:50117188-50117207 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_4:50115975-50115994 None:intergenic 45.0%
GCCGTTTGATTGATATCGGA+TGG - chr4_4:50117366-50117385 Msa0685860:intron 45.0%
GATTGTCTGAAGGAAGGTGA+TGG + chr4_4:50117476-50117495 None:intergenic 45.0%
ACCTTCCTTCAGACAATCCT+AGG - chr4_4:50117478-50117497 Msa0685860:CDS 45.0%
TCCTAGGATTGTCTGAAGGA+AGG + chr4_4:50117482-50117501 None:intergenic 45.0%
CAGTTCCTAGGATTGTCTGA+AGG + chr4_4:50117486-50117505 None:intergenic 45.0%
ATATGAAGGAGGCAGTTCCT+AGG + chr4_4:50117498-50117517 None:intergenic 45.0%
TAGGAACTGCCTCCTTCATA+TGG - chr4_4:50117497-50117516 Msa0685860:intron 45.0%
TTATGTAGCAACCCACATGG+AGG - chr4_4:50117647-50117666 Msa0685860:CDS 45.0%
CCTCCATTGGTATGGCTTGA+AGG + chr4_4:50112969-50112988 None:intergenic 50.0%
CCTTCAAGCCATACCAATGG+AGG - chr4_4:50112966-50112985 Msa0685860:three_prime_UTR 50.0%
GTGACTGAGAAAGCCTCCAT+TGG + chr4_4:50112982-50113001 None:intergenic 50.0%
AGAGGAGGGAATGGTAGTTG+AGG + chr4_4:50113004-50113023 None:intergenic 50.0%
ACGTGTTAGAGAGGAGGGAA+TGG + chr4_4:50113013-50113032 None:intergenic 50.0%
CTCTCTACGTGTTAGAGAGG+AGG + chr4_4:50113019-50113038 None:intergenic 50.0%
CTCCTCTCTAACACGTAGAG+AGG - chr4_4:50113017-50113036 Msa0685860:three_prime_UTR 50.0%
AGCCTCTCTACGTGTTAGAG+AGG + chr4_4:50113022-50113041 None:intergenic 50.0%
GCTGCAGCAGTTAAACCTTC+TGG - chr4_4:50113039-50113058 Msa0685860:three_prime_UTR 50.0%
GAAAGGTTGACATGGCCAGA+AGG + chr4_4:50113057-50113076 None:intergenic 50.0%
!! CTGGAAGGTGTTGTGGTGAA+AGG + chr4_4:50113105-50113124 None:intergenic 50.0%
CTTTCACCACAACACCTTCC+AGG - chr4_4:50113103-50113122 Msa0685860:three_prime_UTR 50.0%
!! TCTACTCCTGGAAGGTGTTG+TGG + chr4_4:50113112-50113131 None:intergenic 50.0%
CTACGGATTCTACTCCTGGA+AGG + chr4_4:50113120-50113139 None:intergenic 50.0%
CTGAGCTTATGCCTGGTTGT+TGG + chr4_4:50113698-50113717 None:intergenic 50.0%
CAACAACCAGGCATAAGCTC+AGG - chr4_4:50113696-50113715 Msa0685860:CDS 50.0%
AGCTATCCTGAGCTTATGCC+TGG + chr4_4:50113705-50113724 None:intergenic 50.0%
TTCCTTCTCACTGGCACCAA+TGG + chr4_4:50114176-50114195 None:intergenic 50.0%
! GGGGAGTCTTGTGTTGGAAA+AGG - chr4_4:50114524-50114543 Msa0685860:intron 50.0%
TGGTCAGGTGTCAAACCTTC+AGG - chr4_4:50114767-50114786 Msa0685860:CDS 50.0%
TGTCAATGGCGCAGTTGTCT+CGG + chr4_4:50114949-50114968 None:intergenic 50.0%
!! GGAATGTAAGGGCGTTGAGA+AGG + chr4_4:50114999-50115018 None:intergenic 50.0%
CCTTGGGCGAAGGAATGTAA+GGG + chr4_4:50115010-50115029 None:intergenic 50.0%
ACCTTGGGCGAAGGAATGTA+AGG + chr4_4:50115011-50115030 None:intergenic 50.0%
! GAAGTACTTACCTTGGGCGA+AGG + chr4_4:50115020-50115039 None:intergenic 50.0%
CTACTGACAGCTGCAGTATC+TGG + chr4_4:50115143-50115162 None:intergenic 50.0%
!!! GGCTGTTTTGCCACTGGTTT+CGG + chr4_4:50115287-50115306 None:intergenic 50.0%
AAAGCGGCTTACGCTGCAAA+AGG + chr4_4:50115593-50115612 None:intergenic 50.0%
ATCCACATCTTCTGTGGGTG+AGG - chr4_4:50115860-50115879 Msa0685860:CDS 50.0%
! GTGGTCTTGACTTTGGCTCA+TGG + chr4_4:50115968-50115987 None:intergenic 50.0%
GGATGGTGAGATAGCTGTTC+AGG - chr4_4:50116086-50116105 Msa0685860:intron 50.0%
TGGTGTGGCGACATTGATGT+AGG + chr4_4:50116487-50116506 None:intergenic 50.0%
CACATCAAGGCCAACTCACT+AGG + chr4_4:50116614-50116633 None:intergenic 50.0%
!! CTAGTGAGTTGGCCTTGATG+TGG - chr4_4:50116612-50116631 Msa0685860:CDS 50.0%
TACACCAAAGGAGGATGGAC+AGG - chr4_4:50117158-50117177 Msa0685860:intron 50.0%
AGATCCTGTCCATCCTCCTT+TGG + chr4_4:50117165-50117184 None:intergenic 50.0%
TCCTTGACCTTGGGGAATTC+AGG + chr4_4:50117315-50117334 None:intergenic 50.0%
TGCAGGATTCCTTGACCTTG+GGG + chr4_4:50117323-50117342 None:intergenic 50.0%
CTGCAGGATTCCTTGACCTT+GGG + chr4_4:50117324-50117343 None:intergenic 50.0%
ACTGCAGGATTCCTTGACCT+TGG + chr4_4:50117325-50117344 None:intergenic 50.0%
CAGTCATGCAGTCACTGCAT+TGG - chr4_4:50117341-50117360 Msa0685860:intron 50.0%
! AAGGAAGGTGATGGTGATGC+AGG + chr4_4:50117467-50117486 None:intergenic 50.0%
!! GCTGGTGCTACCGGAAAAGT+TGG - chr4_4:50113317-50113336 Msa0685860:intron 55.0%
!! GTAAGGAGTGCTCAGAGAGC+TGG - chr4_4:50113487-50113506 Msa0685860:intron 55.0%
TGCTCAGAGAGCTGGTGCAT+TGG - chr4_4:50113495-50113514 Msa0685860:intron 55.0%
!! GAGAGCTGGTGCATTGGTTC+AGG - chr4_4:50113501-50113520 Msa0685860:intron 55.0%
GGTACAAGTGGAGGGAGTGA+AGG - chr4_4:50113984-50114003 Msa0685860:intron 55.0%
!! CACCATTGGTGCCAGTGAGA+AGG - chr4_4:50114171-50114190 Msa0685860:intron 55.0%
GATAGTGAGACCTGGAGGCA+TGG - chr4_4:50114677-50114696 Msa0685860:intron 55.0%
TGCTGAACTCATGGCAGCCA+TGG - chr4_4:50114878-50114897 Msa0685860:CDS 55.0%
CCCTTACATTCCTTCGCCCA+AGG - chr4_4:50115007-50115026 Msa0685860:intron 55.0%
TGTCAGTAGTCCAGCTCCCT+CGG - chr4_4:50115154-50115173 Msa0685860:intron 55.0%
AGCTCCCTCGGCTAATGTCA+CGG - chr4_4:50115166-50115185 Msa0685860:CDS 55.0%
GCTTCCGTGACATTAGCCGA+GGG + chr4_4:50115173-50115192 None:intergenic 55.0%
TGCTTCCGTGACATTAGCCG+AGG + chr4_4:50115174-50115193 None:intergenic 55.0%
ATGCTAGGCACTTCTGCCAC+TGG + chr4_4:50115239-50115258 None:intergenic 55.0%
!! GAAAGCGGCTGTTTTGCCAC+TGG + chr4_4:50115293-50115312 None:intergenic 55.0%
CACCTCACCCACAGAAGATG+TGG + chr4_4:50115865-50115884 None:intergenic 55.0%
CACATCTTCTGTGGGTGAGG+TGG - chr4_4:50115863-50115882 Msa0685860:CDS 55.0%
TGGCCCAGCTCAACTTTCAG+TGG - chr4_4:50115911-50115930 Msa0685860:intron 55.0%
TTCAGTGGAAGACACCCCAC+AGG - chr4_4:50115926-50115945 Msa0685860:intron 55.0%
GAAGACACCCCACAGGATGA+TGG - chr4_4:50115933-50115952 Msa0685860:intron 55.0%
TCTTCCACTGAGAGTTGGGC+TGG + chr4_4:50117138-50117157 None:intergenic 55.0%
AGAGGAGCCTGAATTCCCCA+AGG - chr4_4:50117305-50117324 Msa0685860:intron 55.0%
GCCTGAATTCCCCAAGGTCA+AGG - chr4_4:50117311-50117330 Msa0685860:intron 55.0%
TGCAGTGACTGCATGACTGC+AGG + chr4_4:50117340-50117359 None:intergenic 55.0%
! GAAGGTGATGGTGATGCAGG+AGG + chr4_4:50117464-50117483 None:intergenic 55.0%
ATTACACCGAAGCGCAGCGC+AGG - chr4_4:50114608-50114627 Msa0685860:intron 60.0%
TTACACCGAAGCGCAGCGCA+GGG - chr4_4:50114609-50114628 Msa0685860:intron 60.0%
! TGAGACCTGGAGGCATGGAG+AGG - chr4_4:50114682-50114701 Msa0685860:intron 60.0%
GTGACATTAGCCGAGGGAGC+TGG + chr4_4:50115167-50115186 None:intergenic 60.0%
!! GGCACTTCTGCCACTGGTTC+TGG + chr4_4:50115233-50115252 None:intergenic 60.0%
! ACTGGAGAAGGGGATGACGG+TGG + chr4_4:50115431-50115450 None:intergenic 60.0%
GGGTGAGGTGGCCAAGATTG+AGG - chr4_4:50115875-50115894 Msa0685860:intron 60.0%
TGGACCAGCCCAACTCTCAG+TGG - chr4_4:50117131-50117150 Msa0685860:intron 60.0%
TAGGACCCTGCGCTGCGCTT+CGG + chr4_4:50114617-50114636 None:intergenic 65.0%
GTAGGCCTCTCCATGCCTCC+AGG + chr4_4:50114690-50114709 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 50112805 50117955 50112805 ID=Msa0685860;Name=Msa0685860
chr4_4 mRNA 50112805 50117955 50112805 ID=Msa0685860-mRNA-1;Parent=Msa0685860;Name=Msa0685860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=177|1|1|1|0.86|0.81|16|322|650
chr4_4 exon 50112805 50112913 50112805 ID=Msa0685860-mRNA-1:exon:12767;Parent=Msa0685860-mRNA-1
chr4_4 exon 50112951 50113132 50112951 ID=Msa0685860-mRNA-1:exon:12766;Parent=Msa0685860-mRNA-1
chr4_4 exon 50113230 50113315 50113230 ID=Msa0685860-mRNA-1:exon:12765;Parent=Msa0685860-mRNA-1
chr4_4 exon 50113537 50113851 50113537 ID=Msa0685860-mRNA-1:exon:12764;Parent=Msa0685860-mRNA-1
chr4_4 exon 50114757 50114957 50114757 ID=Msa0685860-mRNA-1:exon:12763;Parent=Msa0685860-mRNA-1
chr4_4 exon 50115160 50115348 50115160 ID=Msa0685860-mRNA-1:exon:12762;Parent=Msa0685860-mRNA-1
chr4_4 exon 50115436 50115629 50115436 ID=Msa0685860-mRNA-1:exon:12761;Parent=Msa0685860-mRNA-1
chr4_4 exon 50115732 50115884 50115732 ID=Msa0685860-mRNA-1:exon:12760;Parent=Msa0685860-mRNA-1
chr4_4 exon 50115972 50116082 50115972 ID=Msa0685860-mRNA-1:exon:12759;Parent=Msa0685860-mRNA-1
chr4_4 exon 50116172 50116244 50116172 ID=Msa0685860-mRNA-1:exon:12758;Parent=Msa0685860-mRNA-1
chr4_4 exon 50116323 50116404 50116323 ID=Msa0685860-mRNA-1:exon:12757;Parent=Msa0685860-mRNA-1
chr4_4 exon 50116501 50116677 50116501 ID=Msa0685860-mRNA-1:exon:12756;Parent=Msa0685860-mRNA-1
chr4_4 exon 50116755 50116800 50116755 ID=Msa0685860-mRNA-1:exon:12755;Parent=Msa0685860-mRNA-1
chr4_4 exon 50117238 50117310 50117238 ID=Msa0685860-mRNA-1:exon:12754;Parent=Msa0685860-mRNA-1
chr4_4 exon 50117406 50117505 50117406 ID=Msa0685860-mRNA-1:exon:12753;Parent=Msa0685860-mRNA-1
chr4_4 exon 50117595 50117955 50117595 ID=Msa0685860-mRNA-1:exon:12752;Parent=Msa0685860-mRNA-1
chr4_4 five_prime_UTR 50117779 50117955 50117779 ID=Msa0685860-mRNA-1:five_prime_utr;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50117595 50117778 50117595 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50117406 50117505 50117406 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50117238 50117310 50117238 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50116755 50116800 50116755 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50116501 50116677 50116501 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50116323 50116404 50116323 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50116172 50116244 50116172 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50115972 50116082 50115972 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50115732 50115884 50115732 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50115436 50115629 50115436 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50115160 50115348 50115160 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50114757 50114957 50114757 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50113537 50113851 50113537 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 CDS 50113261 50113315 50113261 ID=Msa0685860-mRNA-1:cds;Parent=Msa0685860-mRNA-1
chr4_4 three_prime_UTR 50113230 50113260 50113230 ID=Msa0685860-mRNA-1:three_prime_utr;Parent=Msa0685860-mRNA-1
chr4_4 three_prime_UTR 50112951 50113132 50112951 ID=Msa0685860-mRNA-1:three_prime_utr;Parent=Msa0685860-mRNA-1
chr4_4 three_prime_UTR 50112805 50112913 50112805 ID=Msa0685860-mRNA-1:three_prime_utr;Parent=Msa0685860-mRNA-1
Gene Sequence

>Msa0685860

ATGGAGGCTTTCTCAGTCACCTCAACTACCATTCCCTCCTCTCTAACACGTAGAGAGGCTGCAGCAGTTAAACCTTCTGGCCATGTCAACCTTTCCAAGTACTCACATTTCATGAACTACCCTTTCACCACAACACCTTCCAGGAGTAGAATCCGTAGCAATATCATAAGAGCTCAAGTTTCAGGTTCAACAAAATCTAGTACTGCTGAGAAAAAAGATTCCAAGGATGATAACTTAGTATTTGTTGCTGGTGCTACCGGAAAAGTTGGTTCAAGAACAGTCAGGGAGCTTATAAAGCTTGGTTTTGAAGTCAGAGCTGGAGTAAGGAGTGCTCAGAGAGCTGGTGCATTGGTTCAGAGTGTTAAACAATTGAAGCTTGATGGTACAAGTGGAGGGAGTGAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGAACAGATTGGATCAGCATTAGGGAATGCATCAAAGGTGATATGCACCATTGGTGCCAGTGAGAAGGAAATTTTCGACATTACCGGACCTTATCGAATAGATTACATGGCCACCAAAAACCTAGTTGATGCTGCATCTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAATTTATTTTGGGGAGTCTTGTGTTGGAAAAGGAAGGCAGAAGAAGCATTGCTAGCAAGTGGACTTCCATACACAATAGTGAGACCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGCAAACTCATAATGTAACCCTATCAACTGAAGATACTTTATTTGGTGGTCAGGTGTCAAACCTTCAGGTTGCTGAACTCATGGCAGCCATGGCTAAGAATCCCGAACTTTCATATTGTAAAATAGTGGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCAGAAAAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTCCTTCGCCCAAGGTACAGGAACCAGATACTGCAGCTGTCAGTAGTCCAGCTCCCTCGGCTAATGTCACGGAAGCAGTACCTAGTATTTCCCCTCAGAAAGAAACAGAACAACCAGAACCAGTGGCAGAAGTGCCTAGCATTACTCCTCAGAAAGTAACAGAACAACCGAAACCAGTGGCAAAACAGCCGCTTTCTCCTTATACTGCTTATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTTAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGAAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCATATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCACAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAATACATCTTCTGTGGGTTCGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGGACAGGATCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGACAATCCTAG
Protein sequence

>Msa0685860

MEAFSVTSTTIPSSLTRREAAAVKPSGHVNLSKYSHFMNYPFTTTPSRSRIRSNIIRAQVSGSTKSSTAEKKDSKDDNLVFVAGATGKVGSRTVRELIKLGFEVRAGVRSAQRAGALVQSVKQLKLDGTSGGSEAVEKLEIVECDLEKPEQIGSALGNASKVICTIGASEKEIFDITGPYRIDYMATKNLVDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGLPYTIVRPGGMERPTDAYKQTHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTAPLTPAEKLLAKIPSQRPYIPSPKVQEPDTAAVSSPAPSANVTEAVPSISPQKETEQPEPVAEVPSITPQKVTEQPKPVAKQPLSPYTAYDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPEIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPNTSSVGSVPNIDAVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDGQDLHEPKSRPLSPFAMYEDLKPPASPSPSFRQS*