AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127220 MtrunA17_Chr1g0190931 90.426 188 18 0 1 188 51 238 2.46e-126 355
Msa0127220 MtrunA17_Chr8g0348281 30.534 131 84 3 48 175 91 217 4.74e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127220 AT3G04890.1 57.714 175 74 0 7 181 33 207 6.59e-70 211
Msa0127220 AT3G04890.3 57.714 175 74 0 7 181 37 211 1.10e-69 211
Msa0127220 AT3G04890.2 52.174 161 77 0 7 167 33 193 1.07e-55 176
Msa0127220 AT3G04890.4 52.174 161 77 0 7 167 37 197 1.28e-55 176
Msa0127220 AT2G46100.1 31.638 177 110 5 11 182 60 230 1.12e-20 86.3

Find 60 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCAATACTTGAAAC+TGG 0.314009 1_3:+56483865 None:intergenic
GATCCAACTATTAAATTTAG+TGG 0.322543 1_3:-56483584 Msa0127220:intron
CTAGTTATGCATATGCTTAT+CGG 0.325160 1_3:+56482604 None:intergenic
GCATAGATACCTTGTTTGTT+GGG 0.356498 1_3:+56484248 None:intergenic
GGCATAGATACCTTGTTTGT+TGG 0.370365 1_3:+56484247 None:intergenic
AAGTTAGAAGAATAGGTAAT+GGG 0.375602 1_3:+56484631 None:intergenic
TGCGTGCATCTTGGAAATTA+AGG 0.376993 1_3:-56483116 Msa0127220:intron
TTACCACTAAATTTAATAGT+TGG 0.387007 1_3:+56483581 None:intergenic
TAGACTACTAAAGATCAAAA+AGG 0.394100 1_3:-56483258 Msa0127220:intron
TGCTTAGAAGTTAGAAGAAT+AGG 0.394568 1_3:+56484624 None:intergenic
CTATATAAATTAAGAATCAT+AGG 0.403118 1_3:+56482704 None:intergenic
AAACATATGAACCAATGAAT+TGG 0.410456 1_3:-56484601 Msa0127220:five_prime_UTR
TGATGTTCTAATCATCATAA+AGG 0.421681 1_3:-56483848 Msa0127220:CDS
GAAGTTAGAAGAATAGGTAA+TGG 0.421868 1_3:+56484630 None:intergenic
TGGAAGTGTAAGGCTATTGT+AGG 0.430972 1_3:+56484549 None:intergenic
GTTGAATGTCATGGCGGGTG+AGG 0.439811 1_3:-56482759 Msa0127220:exon
ATAGTTGTTAATGACGCAAT+TGG 0.441004 1_3:-56482663 Msa0127220:three_prime_UTR
ATAATGCAGGATGTTGAATC+TGG 0.446617 1_3:-56483150 Msa0127220:intron
AGGCCTCTGATTGCTATTGA+TGG 0.449120 1_3:-56482990 Msa0127220:CDS
CGATAAGCATATGCATAACT+AGG 0.472187 1_3:-56482603 Msa0127220:three_prime_UTR
GATCTTTAGTAGTCTAATTG+AGG 0.474744 1_3:+56483265 None:intergenic
CGCCATGACATTCAACCACC+TGG 0.479324 1_3:+56482766 None:intergenic
TTGAATGTCATGGCGGGTGA+GGG 0.513980 1_3:-56482758 Msa0127220:exon
ATTGAGGCACAGTCGAAGAA+TGG 0.515153 1_3:+56483281 None:intergenic
GGAAGTGTAAGGCTATTGTA+GGG 0.518951 1_3:+56484550 None:intergenic
AGATACCTTGTTTGTTGGGG+AGG 0.519985 1_3:+56484252 None:intergenic
GGACGCCACCCTTGCTGTTG+CGG 0.524042 1_3:-56484416 Msa0127220:five_prime_UTR
GTTTAAGCAATGTTTACTAC+AGG 0.527462 1_3:-56482558 Msa0127220:three_prime_UTR
CATAGATACCTTGTTTGTTG+GGG 0.538359 1_3:+56484249 None:intergenic
AGACATTTATTACCTGGGAG+TGG 0.539869 1_3:+56484529 None:intergenic
CATCATCAATACTTGAAACT+GGG 0.541779 1_3:+56483866 None:intergenic
GGGGAGGAGAGAAAAGCCTC+AGG 0.553407 1_3:+56484268 None:intergenic
GCGGAGTGACGGAGCTCCTG+AGG 0.554237 1_3:-56484284 Msa0127220:CDS
GACCACACATAGTTAGCTGA+AGG 0.562367 1_3:-56484702 None:intergenic
AACCAGGTGGTTGAATGTCA+TGG 0.562908 1_3:-56482768 Msa0127220:exon
TCGTTCGGCATATTGAGAGT+TGG 0.563467 1_3:-56482837 Msa0127220:CDS
GATTGCAGTGAGCGGAGTGA+CGG 0.565614 1_3:-56484295 Msa0127220:CDS
AGCCTTACACTTCCACTCCC+AGG 0.566168 1_3:-56484541 Msa0127220:intron
AGAAAGAAATGAAACCCCTC+AGG 0.569312 1_3:-56484325 Msa0127220:CDS
TGTTTCCGCAACAGCAAGGG+TGG 0.575559 1_3:+56484411 None:intergenic
CTGCAATCTTCAGAACCTGA+GGG 0.576531 1_3:+56484310 None:intergenic
TGTTGTTTCCGCAACAGCAA+GGG 0.587584 1_3:+56484408 None:intergenic
TCTCTCCTCCCCAACAAACA+AGG 0.591145 1_3:-56484257 Msa0127220:intron
GTGTTGTTTCCGCAACAGCA+AGG 0.594278 1_3:+56484407 None:intergenic
GACTTGTGCAATTTATAACA+TGG 0.596814 1_3:-56484352 Msa0127220:exon
TACCTGGGAGTGGAAGTGTA+AGG 0.601591 1_3:+56484539 None:intergenic
CATTAACAACTATATACAGT+AGG 0.611061 1_3:+56482673 None:intergenic
GGACCAACTTAAAACTTCCG+TGG 0.611426 1_3:-56483013 Msa0127220:CDS
ACTGATAGATGAGAAGGGAA+AGG 0.611669 1_3:+56482531 None:intergenic
ATAGCAATCAGAGGCCTCCA+CGG 0.621582 1_3:+56482996 None:intergenic
AGGTGGTTGAATGTCATGGC+GGG 0.631232 1_3:-56482764 Msa0127220:exon
ACTGCAATCTTCAGAACCTG+AGG 0.643213 1_3:+56484309 None:intergenic
ATCATCAATACTTGAAACTG+GGG 0.643651 1_3:+56483867 None:intergenic
TTCAAGTTTGATAAACCAGG+TGG 0.653584 1_3:-56482781 Msa0127220:CDS
GTTCTGAAGATTGCAGTGAG+CGG 0.663984 1_3:-56484303 Msa0127220:CDS
TGCAATCTTCAGAACCTGAG+GGG 0.670652 1_3:+56484311 None:intergenic
GAAGTGTAAGGCTATTGTAG+GGG 0.673629 1_3:+56484551 None:intergenic
CTTCCATCAATAGCAATCAG+AGG 0.678084 1_3:+56482987 None:intergenic
CCAACTTAAAACTTCCGTGG+AGG 0.722693 1_3:-56483010 Msa0127220:CDS
CAGGTGGTTGAATGTCATGG+CGG 0.757865 1_3:-56482765 Msa0127220:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATTAATAATGC+AGG - chr1_3:56484076-56484095 Msa0127220:intron 10.0%
!! ATTATATAAATTAATAATGC+AGG - chr1_3:56484076-56484095 Msa0127220:intron 10.0%
!! TGAAAAAATATTTGATAAGA+GGG + chr1_3:56483478-56483497 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG + chr1_3:56483479-56483498 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG + chr1_3:56484538-56484557 None:intergenic 15.0%
!! TGAAAAAATATTTGATAAGA+GGG + chr1_3:56483478-56483497 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG + chr1_3:56483479-56483498 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG + chr1_3:56484538-56484557 None:intergenic 15.0%
!!! TAAAGATGTTTGTTTTTACT+CGG + chr1_3:56482577-56482596 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG + chr1_3:56482718-56482737 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG + chr1_3:56483318-56483337 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG + chr1_3:56483661-56483680 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG + chr1_3:56483804-56483823 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG + chr1_3:56483805-56483824 None:intergenic 20.0%
!!! TAAAGATGTTTGTTTTTACT+CGG + chr1_3:56482577-56482596 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG + chr1_3:56482718-56482737 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG + chr1_3:56483318-56483337 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG + chr1_3:56483661-56483680 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG + chr1_3:56483804-56483823 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG + chr1_3:56483805-56483824 None:intergenic 20.0%
! AAGTTAGAAGAATAGGTAAT+GGG + chr1_3:56482611-56482630 None:intergenic 25.0%
! AAACATATGAACCAATGAAT+TGG - chr1_3:56482638-56482657 Msa0127220:three_prime_UTR 25.0%
! GAATAAAGACATTTATTACC+TGG + chr1_3:56482719-56482738 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+CGG + chr1_3:56483142-56483161 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG - chr1_3:56483391-56483410 Msa0127220:intron 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG - chr1_3:56483589-56483608 Msa0127220:CDS 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG - chr1_3:56483590-56483609 Msa0127220:CDS 25.0%
! GATCCAACTATTAAATTTAG+TGG - chr1_3:56483655-56483674 Msa0127220:intron 25.0%
! AGACTAGCATAAGATATTAT+AGG + chr1_3:56483699-56483718 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG - chr1_3:56483823-56483842 Msa0127220:CDS 25.0%
! TAGACTACTAAAGATCAAAA+AGG - chr1_3:56483981-56484000 Msa0127220:intron 25.0%
!!! ATTTTCAAGTTTGATAAACC+AGG - chr1_3:56484455-56484474 Msa0127220:intron 25.0%
! CATTAACAACTATATACAGT+AGG + chr1_3:56484569-56484588 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG + chr1_3:56484604-56484623 None:intergenic 25.0%
! AAGTTAGAAGAATAGGTAAT+GGG + chr1_3:56482611-56482630 None:intergenic 25.0%
! AAACATATGAACCAATGAAT+TGG - chr1_3:56482638-56482657 Msa0127220:three_prime_UTR 25.0%
! GAATAAAGACATTTATTACC+TGG + chr1_3:56482719-56482738 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+CGG + chr1_3:56483142-56483161 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG - chr1_3:56483391-56483410 Msa0127220:intron 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG - chr1_3:56483589-56483608 Msa0127220:CDS 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG - chr1_3:56483590-56483609 Msa0127220:CDS 25.0%
! GATCCAACTATTAAATTTAG+TGG - chr1_3:56483655-56483674 Msa0127220:intron 25.0%
! AGACTAGCATAAGATATTAT+AGG + chr1_3:56483699-56483718 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG - chr1_3:56483823-56483842 Msa0127220:CDS 25.0%
! TAGACTACTAAAGATCAAAA+AGG - chr1_3:56483981-56484000 Msa0127220:intron 25.0%
!!! ATTTTCAAGTTTGATAAACC+AGG - chr1_3:56484455-56484474 Msa0127220:intron 25.0%
! CATTAACAACTATATACAGT+AGG + chr1_3:56484569-56484588 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG + chr1_3:56484604-56484623 None:intergenic 25.0%
GAAGTTAGAAGAATAGGTAA+TGG + chr1_3:56482612-56482631 None:intergenic 30.0%
TGCTTAGAAGTTAGAAGAAT+AGG + chr1_3:56482618-56482637 None:intergenic 30.0%
GACTTGTGCAATTTATAACA+TGG - chr1_3:56482887-56482906 Msa0127220:intron 30.0%
AAGTGTTTGTGCTACATAAA+TGG + chr1_3:56483016-56483035 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG + chr1_3:56483375-56483394 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG + chr1_3:56483376-56483395 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG + chr1_3:56483377-56483396 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG - chr1_3:56483549-56483568 Msa0127220:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG + chr1_3:56483565-56483584 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG - chr1_3:56483898-56483917 Msa0127220:CDS 30.0%
GATCTTTAGTAGTCTAATTG+AGG + chr1_3:56483977-56483996 None:intergenic 30.0%
ATTAACATGCTTAATGAGCA+AGG + chr1_3:56484155-56484174 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG - chr1_3:56484205-56484224 Msa0127220:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG + chr1_3:56484332-56484351 None:intergenic 30.0%
!! ATTTTGTTTGACAGATCGTT+CGG - chr1_3:56484387-56484406 Msa0127220:five_prime_UTR 30.0%
! AAGAATCATAGGCATTTTCA+TGG + chr1_3:56484527-56484546 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG - chr1_3:56484576-56484595 Msa0127220:five_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG + chr1_3:56484638-56484657 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG - chr1_3:56484681-56484700 Msa0127220:five_prime_UTR 30.0%
GAAGTTAGAAGAATAGGTAA+TGG + chr1_3:56482612-56482631 None:intergenic 30.0%
TGCTTAGAAGTTAGAAGAAT+AGG + chr1_3:56482618-56482637 None:intergenic 30.0%
GACTTGTGCAATTTATAACA+TGG - chr1_3:56482887-56482906 Msa0127220:intron 30.0%
AAGTGTTTGTGCTACATAAA+TGG + chr1_3:56483016-56483035 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG + chr1_3:56483375-56483394 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG + chr1_3:56483376-56483395 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG + chr1_3:56483377-56483396 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG - chr1_3:56483549-56483568 Msa0127220:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG + chr1_3:56483565-56483584 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG - chr1_3:56483898-56483917 Msa0127220:CDS 30.0%
GATCTTTAGTAGTCTAATTG+AGG + chr1_3:56483977-56483996 None:intergenic 30.0%
ATTAACATGCTTAATGAGCA+AGG + chr1_3:56484155-56484174 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG - chr1_3:56484205-56484224 Msa0127220:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG + chr1_3:56484332-56484351 None:intergenic 30.0%
!! ATTTTGTTTGACAGATCGTT+CGG - chr1_3:56484387-56484406 Msa0127220:five_prime_UTR 30.0%
! AAGAATCATAGGCATTTTCA+TGG + chr1_3:56484527-56484546 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG - chr1_3:56484576-56484595 Msa0127220:five_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG + chr1_3:56484638-56484657 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG - chr1_3:56484681-56484700 Msa0127220:five_prime_UTR 30.0%
!! GCATGTTTTTGCCAATTCAT+TGG + chr1_3:56482652-56482671 None:intergenic 35.0%
CTGAATCTCTTGTTAAGACT+AGG - chr1_3:56482802-56482821 Msa0127220:CDS 35.0%
! CATAGATACCTTGTTTGTTG+GGG + chr1_3:56482993-56483012 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG + chr1_3:56482994-56483013 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG + chr1_3:56483109-56483128 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG + chr1_3:56483267-56483286 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG - chr1_3:56483902-56483921 Msa0127220:CDS 35.0%
GATGTATGATCATACAGGTA+GGG - chr1_3:56483903-56483922 Msa0127220:CDS 35.0%
ATAATGCAGGATGTTGAATC+TGG - chr1_3:56484089-56484108 Msa0127220:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG - chr1_3:56484357-56484376 Msa0127220:five_prime_UTR 35.0%
! TTCAAGTTTGATAAACCAGG+TGG - chr1_3:56484458-56484477 Msa0127220:intron 35.0%
CGATAAGCATATGCATAACT+AGG - chr1_3:56484636-56484655 Msa0127220:five_prime_UTR 35.0%
TCAATCCTTCAGCTAACTAT+AGG + chr1_3:56482545-56482564 None:intergenic 35.0%
!! GCATGTTTTTGCCAATTCAT+TGG + chr1_3:56482652-56482671 None:intergenic 35.0%
CTGAATCTCTTGTTAAGACT+AGG - chr1_3:56482802-56482821 Msa0127220:CDS 35.0%
! CATAGATACCTTGTTTGTTG+GGG + chr1_3:56482993-56483012 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG + chr1_3:56482994-56483013 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG + chr1_3:56483109-56483128 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG + chr1_3:56483267-56483286 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG - chr1_3:56483902-56483921 Msa0127220:CDS 35.0%
GATGTATGATCATACAGGTA+GGG - chr1_3:56483903-56483922 Msa0127220:CDS 35.0%
ATAATGCAGGATGTTGAATC+TGG - chr1_3:56484089-56484108 Msa0127220:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG - chr1_3:56484357-56484376 Msa0127220:five_prime_UTR 35.0%
! TTCAAGTTTGATAAACCAGG+TGG - chr1_3:56484458-56484477 Msa0127220:intron 35.0%
CGATAAGCATATGCATAACT+AGG - chr1_3:56484636-56484655 Msa0127220:five_prime_UTR 35.0%
! GCAAAAACATGCTGCTTCAA+CGG - chr1_3:56482660-56482679 Msa0127220:three_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG + chr1_3:56482691-56482710 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG + chr1_3:56482692-56482711 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG + chr1_3:56482693-56482712 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG + chr1_3:56482713-56482732 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG + chr1_3:56482876-56482895 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG - chr1_3:56482914-56482933 Msa0127220:intron 40.0%
! GGCATAGATACCTTGTTTGT+TGG + chr1_3:56482995-56483014 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG + chr1_3:56483076-56483095 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG + chr1_3:56483099-56483118 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG - chr1_3:56483196-56483215 Msa0127220:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG - chr1_3:56483202-56483221 Msa0127220:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG - chr1_3:56484114-56484133 Msa0127220:intron 40.0%
TGCGTGCATCTTGGAAATTA+AGG - chr1_3:56484123-56484142 Msa0127220:intron 40.0%
CTTCCATCAATAGCAATCAG+AGG + chr1_3:56484255-56484274 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG + chr1_3:56484367-56484386 None:intergenic 40.0%
! GCAAAAACATGCTGCTTCAA+CGG - chr1_3:56482660-56482679 Msa0127220:three_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG + chr1_3:56482691-56482710 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG + chr1_3:56482692-56482711 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG + chr1_3:56482693-56482712 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG + chr1_3:56482713-56482732 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG + chr1_3:56482876-56482895 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG - chr1_3:56482914-56482933 Msa0127220:intron 40.0%
! GGCATAGATACCTTGTTTGT+TGG + chr1_3:56482995-56483014 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG + chr1_3:56483076-56483095 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG + chr1_3:56483099-56483118 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG - chr1_3:56483196-56483215 Msa0127220:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG - chr1_3:56483202-56483221 Msa0127220:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG - chr1_3:56484114-56484133 Msa0127220:intron 40.0%
TGCGTGCATCTTGGAAATTA+AGG - chr1_3:56484123-56484142 Msa0127220:intron 40.0%
CTTCCATCAATAGCAATCAG+AGG + chr1_3:56484255-56484274 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG + chr1_3:56484367-56484386 None:intergenic 40.0%
!! TGTTGTTTCCGCAACAGCAA+GGG + chr1_3:56482834-56482853 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG + chr1_3:56482931-56482950 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG + chr1_3:56482932-56482951 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG + chr1_3:56482933-56482952 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG - chr1_3:56482936-56482955 Msa0127220:intron 45.0%
! AGATACCTTGTTTGTTGGGG+AGG + chr1_3:56482990-56483009 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG - chr1_3:56483033-56483052 Msa0127220:intron 45.0%
ACACTTGACACATCCGACAT+TGG - chr1_3:56483083-56483102 Msa0127220:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG - chr1_3:56483215-56483234 Msa0127220:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG + chr1_3:56483243-56483262 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG + chr1_3:56483250-56483269 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG - chr1_3:56483422-56483441 Msa0127220:intron 45.0%
ATTGAGGCACAGTCGAAGAA+TGG + chr1_3:56483961-56483980 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG - chr1_3:56484226-56484245 Msa0127220:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG + chr1_3:56484232-56484251 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG - chr1_3:56484229-56484248 Msa0127220:intron 45.0%
! AGGCCTCTGATTGCTATTGA+TGG - chr1_3:56484249-56484268 Msa0127220:intron 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG + chr1_3:56484324-56484343 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG + chr1_3:56484327-56484346 None:intergenic 45.0%
TCGTTCGGCATATTGAGAGT+TGG - chr1_3:56484402-56484421 Msa0127220:five_prime_UTR 45.0%
AACCAGGTGGTTGAATGTCA+TGG - chr1_3:56484471-56484490 Msa0127220:intron 45.0%
!! TGTTGTTTCCGCAACAGCAA+GGG + chr1_3:56482834-56482853 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG + chr1_3:56482931-56482950 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG + chr1_3:56482932-56482951 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG + chr1_3:56482933-56482952 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG - chr1_3:56482936-56482955 Msa0127220:intron 45.0%
! AGATACCTTGTTTGTTGGGG+AGG + chr1_3:56482990-56483009 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG - chr1_3:56483033-56483052 Msa0127220:intron 45.0%
ACACTTGACACATCCGACAT+TGG - chr1_3:56483083-56483102 Msa0127220:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG - chr1_3:56483215-56483234 Msa0127220:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG + chr1_3:56483243-56483262 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG + chr1_3:56483250-56483269 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG - chr1_3:56483422-56483441 Msa0127220:intron 45.0%
ATTGAGGCACAGTCGAAGAA+TGG + chr1_3:56483961-56483980 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG - chr1_3:56484226-56484245 Msa0127220:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG + chr1_3:56484232-56484251 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG - chr1_3:56484229-56484248 Msa0127220:intron 45.0%
! AGGCCTCTGATTGCTATTGA+TGG - chr1_3:56484249-56484268 Msa0127220:intron 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG + chr1_3:56484324-56484343 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG + chr1_3:56484327-56484346 None:intergenic 45.0%
TCGTTCGGCATATTGAGAGT+TGG - chr1_3:56484402-56484421 Msa0127220:five_prime_UTR 45.0%
AACCAGGTGGTTGAATGTCA+TGG - chr1_3:56484471-56484490 Msa0127220:intron 45.0%
! TACCTGGGAGTGGAAGTGTA+AGG + chr1_3:56482703-56482722 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG + chr1_3:56482835-56482854 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG - chr1_3:56482982-56483001 Msa0127220:CDS 50.0%
TACCAGTGTCATGTCTGCTC+TGG - chr1_3:56483175-56483194 Msa0127220:intron 50.0%
TGTTGTTGGAACCAACTGCC+AGG - chr1_3:56483229-56483248 Msa0127220:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG - chr1_3:56483230-56483249 Msa0127220:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG + chr1_3:56484246-56484265 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG - chr1_3:56484474-56484493 Msa0127220:intron 50.0%
AGGTGGTTGAATGTCATGGC+GGG - chr1_3:56484475-56484494 Msa0127220:intron 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG - chr1_3:56484481-56484500 Msa0127220:intron 50.0%
! TACCTGGGAGTGGAAGTGTA+AGG + chr1_3:56482703-56482722 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG + chr1_3:56482835-56482854 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG - chr1_3:56482982-56483001 Msa0127220:CDS 50.0%
TACCAGTGTCATGTCTGCTC+TGG - chr1_3:56483175-56483194 Msa0127220:intron 50.0%
TGTTGTTGGAACCAACTGCC+AGG - chr1_3:56483229-56483248 Msa0127220:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG - chr1_3:56483230-56483249 Msa0127220:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG + chr1_3:56484246-56484265 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG - chr1_3:56484474-56484493 Msa0127220:intron 50.0%
AGGTGGTTGAATGTCATGGC+GGG - chr1_3:56484475-56484494 Msa0127220:intron 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG - chr1_3:56484481-56484500 Msa0127220:intron 50.0%
AGCCTTACACTTCCACTCCC+AGG - chr1_3:56482698-56482717 Msa0127220:three_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG + chr1_3:56482831-56482850 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG - chr1_3:56482944-56482963 Msa0127220:intron 55.0%
CACCAGAGCAGACATGACAC+TGG + chr1_3:56483180-56483199 None:intergenic 55.0%
CGCCATGACATTCAACCACC+TGG + chr1_3:56484476-56484495 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG - chr1_3:56484480-56484499 Msa0127220:intron 55.0%
AGCCTTACACTTCCACTCCC+AGG - chr1_3:56482698-56482717 Msa0127220:three_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG + chr1_3:56482831-56482850 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG - chr1_3:56482944-56482963 Msa0127220:intron 55.0%
CACCAGAGCAGACATGACAC+TGG + chr1_3:56483180-56483199 None:intergenic 55.0%
CGCCATGACATTCAACCACC+TGG + chr1_3:56484476-56484495 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG - chr1_3:56484480-56484499 Msa0127220:intron 55.0%
GGGGAGGAGAGAAAAGCCTC+AGG + chr1_3:56482974-56482993 None:intergenic 60.0%
GGGGAGGAGAGAAAAGCCTC+AGG + chr1_3:56482974-56482993 None:intergenic 60.0%
!! GGACGCCACCCTTGCTGTTG+CGG - chr1_3:56482823-56482842 Msa0127220:CDS 65.0%
!! GGACGCCACCCTTGCTGTTG+CGG - chr1_3:56482823-56482842 Msa0127220:CDS 65.0%
! GCGGAGTGACGGAGCTCCTG+AGG - chr1_3:56482955-56482974 Msa0127220:intron 70.0%
! GCGGAGTGACGGAGCTCCTG+AGG - chr1_3:56482955-56482974 Msa0127220:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56482545 56484716 56482545 ID=Msa0127220;Name=Msa0127220
chr1_3 mRNA 56482545 56484716 56482545 ID=Msa0127220-mRNA-1;Parent=Msa0127220;Name=Msa0127220-mRNA-1;_AED=0.14;_eAED=0.14;_QI=263|1|1|1|0.85|0.75|8|232|188
chr1_3 exon 56482545 56482860 56482545 ID=Msa0127220-mRNA-1:exon:17823;Parent=Msa0127220-mRNA-1
chr1_3 exon 56482956 56483034 56482956 ID=Msa0127220-mRNA-1:exon:17822;Parent=Msa0127220-mRNA-1
chr1_3 exon 56483117 56483163 56483117 ID=Msa0127220-mRNA-1:exon:17821;Parent=Msa0127220-mRNA-1
chr1_3 exon 56483259 56483341 56483259 ID=Msa0127220-mRNA-1:exon:17820;Parent=Msa0127220-mRNA-1
chr1_3 exon 56483585 56483650 56483585 ID=Msa0127220-mRNA-1:exon:17819;Parent=Msa0127220-mRNA-1
chr1_3 exon 56483818 56483927 56483818 ID=Msa0127220-mRNA-1:exon:17818;Parent=Msa0127220-mRNA-1
chr1_3 exon 56484258 56484443 56484258 ID=Msa0127220-mRNA-1:exon:17817;Parent=Msa0127220-mRNA-1
chr1_3 exon 56484542 56484716 56484542 ID=Msa0127220-mRNA-1:exon:17816;Parent=Msa0127220-mRNA-1
chr1_3 five_prime_UTR 56484542 56484716 56484542 ID=Msa0127220-mRNA-1:five_prime_utr;Parent=Msa0127220-mRNA-1
chr1_3 five_prime_UTR 56484356 56484443 56484356 ID=Msa0127220-mRNA-1:five_prime_utr;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56484258 56484355 56484258 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56483818 56483927 56483818 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56483585 56483650 56483585 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56483259 56483341 56483259 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56483117 56483163 56483117 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56482956 56483034 56482956 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 CDS 56482777 56482860 56482777 ID=Msa0127220-mRNA-1:cds;Parent=Msa0127220-mRNA-1
chr1_3 three_prime_UTR 56482545 56482776 56482545 ID=Msa0127220-mRNA-1:three_prime_utr;Parent=Msa0127220-mRNA-1
Gene Sequence

>Msa0127220

ATGGTAAAAGAAAGAAATGAAACCCCTCAGGTTCTGAAGATTGCAGTGAGCGGAGTGACGGAGCTCCTGAGGCTTTTCTCTCCTCCCCAACAAACAAGTGTTTTAAGCAGTAACGTTGAGAAACAGAATAATGACTCCCCAGTTTCAAGTATTGATGATGTTCTAATCATCATAAAGGATGATTATGACAGCGCTTATTTTGTCACAGGGAACTTCACTTCTTCAATTTACGCAGAAAATTGTATCTTTGAAGATCCAACTATTAAATTTAGTGGTAGGGACTTATATGCGCGCAACTTGAAATTACTCGTTCCATTCTTCGACTGTGCCTCAATTAGACTACTAAAGATCAAAAAGGATGTTGAATCTGGCACAAATTTTCTGCGTGCATCTTGGAAATTAAGGACCAACTTAAAACTTCCGTGGAGGCCTCTGATTGCTATTGATGGAAGCACTTCTTATGAATTGAATGAAGATTTCAAAATCGTTCGGCATATTGAGAGTTGGAATGTTTCTGCACTTGAAGCAGTTTTGCAGATTTTCAAGTTTGATAAACCAGGTGGTTGA

Protein sequence

>Msa0127220

MVKERNETPQVLKIAVSGVTELLRLFSPPQQTSVLSSNVEKQNNDSPVSSIDDVLIIIKDDYDSAYFVTGNFTSSIYAENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIRLLKIKKDVESGTNFLRASWKLRTNLKLPWRPLIAIDGSTSYELNEDFKIVRHIESWNVSALEAVLQIFKFDKPGG*