Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798830 | XP_003611934.1 | 98.758 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798830 | sp|Q94A43|BEH2_ARATH | 64.907 | 322 | 83 | 13 | 9 | 322 | 16 | 315 | 4.16e-100 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798830 | G7KC60 | 98.758 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798830 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0798830 | -0.801749 | 7.772756e-49 | -8.615850e-47 |
| Msa0020630 | Msa0798830 | -0.802329 | 5.906866e-49 | -8.615850e-47 |
| Msa0030030 | Msa0798830 | -0.818616 | 1.785900e-52 | -8.615850e-47 |
| Msa0030590 | Msa0798830 | -0.800803 | 1.214481e-48 | -8.615850e-47 |
| Msa0055280 | Msa0798830 | -0.827982 | 1.157784e-54 | -8.615850e-47 |
| Msa0061600 | Msa0798830 | 0.803463 | 3.444633e-49 | -8.615850e-47 |
| Msa0101060 | Msa0798830 | -0.821612 | 3.680707e-53 | -8.615850e-47 |
| Msa0620640 | Msa0798830 | -0.816586 | 5.122710e-52 | -8.615850e-47 |
| Msa0621890 | Msa0798830 | -0.822704 | 2.053910e-53 | -8.615850e-47 |
| Msa0660880 | Msa0798830 | 0.859035 | 5.462285e-63 | -8.615850e-47 |
| Msa0707780 | Msa0798830 | -0.805911 | 1.062130e-49 | -8.615850e-47 |
| Msa0709820 | Msa0798830 | 0.816520 | 5.300162e-52 | -8.615850e-47 |
| Msa0716740 | Msa0798830 | 0.837277 | 5.715783e-57 | -8.615850e-47 |
| Msa0747500 | Msa0798830 | 0.815258 | 1.013711e-51 | -8.615850e-47 |
| Msa0757540 | Msa0798830 | 0.913324 | 7.020535e-84 | -8.615850e-47 |
| Msa0757990 | Msa0798830 | 0.861594 | 9.190492e-64 | -8.615850e-47 |
| Msa0792510 | Msa0798830 | -0.809576 | 1.767637e-50 | -8.615850e-47 |
| Msa0798830 | Msa0799290 | 0.848606 | 5.507571e-60 | -8.615850e-47 |
| Msa0798830 | Msa0837510 | 0.847645 | 1.014540e-59 | -8.615850e-47 |
| Msa0798830 | Msa0861180 | 0.823948 | 1.052064e-53 | -8.615850e-47 |
| Msa0798830 | Msa0887000 | -0.831884 | 1.295840e-55 | -8.615850e-47 |
| Msa0798830 | Msa0896990 | 0.814631 | 1.396503e-51 | -8.615850e-47 |
| Msa0798830 | Msa0951720 | -0.809137 | 2.195470e-50 | -8.615850e-47 |
| Msa0798830 | Msa0973230 | -0.801210 | 1.002605e-48 | -8.615850e-47 |
| Msa0798830 | Msa1011320 | 0.811845 | 5.709115e-51 | -8.615850e-47 |
| Msa0798830 | Msa1011350 | 0.802942 | 4.414823e-49 | -8.615850e-47 |
| Msa0798830 | Msa1032350 | -0.811756 | 5.970176e-51 | -8.615850e-47 |
| Msa0798830 | Msa1037060 | 0.838564 | 2.668142e-57 | -8.615850e-47 |
| Msa0798830 | Msa1040730 | 0.801409 | 9.128703e-49 | -8.615850e-47 |
| Msa0798830 | Msa1077940 | 0.837079 | 6.420670e-57 | -8.615850e-47 |
| Msa0798830 | Msa1098990 | -0.820244 | 7.596982e-53 | -8.615850e-47 |
| Msa0798830 | Msa1118140 | -0.804217 | 2.401897e-49 | -8.615850e-47 |
| Msa0798830 | Msa1142850 | 0.804577 | 2.020222e-49 | -8.615850e-47 |
| Msa0798830 | Msa1142860 | 0.804728 | 1.879265e-49 | -8.615850e-47 |
| Msa0798830 | Msa1143240 | 0.916859 | 1.071385e-85 | -8.615850e-47 |
| Msa0798830 | Msa1164800 | 0.834811 | 2.415325e-56 | -8.615850e-47 |
| Msa0798830 | Msa1191390 | -0.807698 | 4.450997e-50 | -8.615850e-47 |
| Msa0798830 | Msa1207480 | 0.801067 | 1.072479e-48 | -8.615850e-47 |
| Msa0798830 | Msa1220230 | -0.817285 | 3.569560e-52 | -8.615850e-47 |
| Msa0798830 | Msa1221570 | 0.835888 | 1.291046e-56 | -8.615850e-47 |
| Msa0798830 | Msa1222030 | 0.803114 | 4.067996e-49 | -8.615850e-47 |
| Msa0798830 | Msa1226600 | -0.812051 | 5.150174e-51 | -8.615850e-47 |
| Msa0798830 | Msa1235770 | -0.800375 | 1.484501e-48 | -8.615850e-47 |
| Msa0798830 | Msa1258280 | -0.809103 | 2.232704e-50 | -8.615850e-47 |
| Msa0798830 | Msa1298290 | -0.825280 | 5.108564e-54 | -8.615850e-47 |
| Msa0798830 | Msa1319440 | -0.807340 | 5.303352e-50 | -8.615850e-47 |
| Msa0798830 | Msa1335970 | 0.838826 | 2.283042e-57 | -8.615850e-47 |
| Msa0798830 | Msa1373950 | -0.814372 | 1.593144e-51 | -8.615850e-47 |
| Msa0798830 | Msa1397540 | -0.817580 | 3.063689e-52 | -8.615850e-47 |
| Msa0798830 | Msa1400700 | 0.834840 | 2.375108e-56 | -8.615850e-47 |
| Msa0798830 | Msa1405470 | -0.825079 | 5.698524e-54 | -8.615850e-47 |
| Msa0798830 | Msa1460310 | 0.855729 | 5.187984e-62 | -8.615850e-47 |
| Msa0159750 | Msa0798830 | -0.800298 | 1.538975e-48 | -8.615850e-47 |
| Msa0169960 | Msa0798830 | -0.812487 | 4.136619e-51 | -8.615850e-47 |
| Msa0194570 | Msa0798830 | -0.812123 | 4.966718e-51 | -8.615850e-47 |
| Msa0197750 | Msa0798830 | 0.804592 | 2.005890e-49 | -8.615850e-47 |
| Msa0208390 | Msa0798830 | -0.815733 | 7.945772e-52 | -8.615850e-47 |
| Msa0413740 | Msa0798830 | -0.822071 | 2.881968e-53 | -8.615850e-47 |
| Msa0434890 | Msa0798830 | 0.825195 | 5.349926e-54 | -8.615850e-47 |
| Msa0454940 | Msa0798830 | -0.806981 | 6.317763e-50 | -8.615850e-47 |
| Msa0458790 | Msa0798830 | -0.808161 | 3.548768e-50 | -8.615850e-47 |
| Msa0459120 | Msa0798830 | -0.819445 | 1.157200e-52 | -8.615850e-47 |
| Msa0264940 | Msa0798830 | 0.857579 | 1.482317e-62 | -8.615850e-47 |
| Msa0286790 | Msa0798830 | -0.800340 | 1.508816e-48 | -8.615850e-47 |
| Msa0298940 | Msa0798830 | -0.802081 | 6.644388e-49 | -8.615850e-47 |
| Msa0302990 | Msa0798830 | 0.855618 | 5.589190e-62 | -8.615850e-47 |
| Msa0336270 | Msa0798830 | -0.808234 | 3.423638e-50 | -8.615850e-47 |
| Msa0362430 | Msa0798830 | -0.830624 | 2.643870e-55 | -8.615850e-47 |
| Msa0502910 | Msa0798830 | -0.808602 | 2.856552e-50 | -8.615850e-47 |
| Msa0505390 | Msa0798830 | -0.821988 | 3.012802e-53 | -8.615850e-47 |
| Msa0574170 | Msa0798830 | -0.829790 | 4.226371e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798830 | MtrunA17_Chr5g0403631 | 98.758 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 0.0 | 649 |
| Msa0798830 | MtrunA17_Chr3g0141401 | 54.103 | 329 | 119 | 8 | 2 | 322 | 8 | 312 | 5.02e-80 | 246 |
| Msa0798830 | MtrunA17_Chr1g0154651 | 37.975 | 316 | 111 | 8 | 9 | 322 | 14 | 246 | 3.11e-49 | 164 |
| Msa0798830 | MtrunA17_Chr2g0315211 | 43.466 | 352 | 133 | 12 | 6 | 323 | 3 | 322 | 2.73e-37 | 135 |
| Msa0798830 | MtrunA17_Chr2g0315201 | 42.363 | 347 | 137 | 12 | 6 | 323 | 3 | 315 | 6.22e-35 | 129 |
| Msa0798830 | MtrunA17_Chr5g0408851 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.59e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798830 | AT1G75080.2 | 54.303 | 337 | 105 | 12 | 9 | 322 | 23 | 333 | 9.25e-93 | 279 |
| Msa0798830 | AT1G75080.1 | 54.303 | 337 | 105 | 12 | 9 | 322 | 23 | 333 | 9.25e-93 | 279 |
| Msa0798830 | AT1G19350.5 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.38e-91 | 275 |
| Msa0798830 | AT1G19350.1 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.38e-91 | 275 |
| Msa0798830 | AT1G19350.6 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.38e-91 | 275 |
| Msa0798830 | AT1G19350.4 | 54.303 | 337 | 105 | 12 | 9 | 322 | 22 | 332 | 5.38e-91 | 275 |
| Msa0798830 | AT1G19350.3 | 54.303 | 337 | 105 | 12 | 9 | 322 | 44 | 354 | 5.77e-91 | 275 |
| Msa0798830 | AT3G50750.1 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.73e-76 | 236 |
| Msa0798830 | AT4G36780.1 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.89e-61 | 197 |
| Msa0798830 | AT1G78700.1 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.50e-44 | 155 |
| Msa0798830 | AT4G18890.1 | 40.432 | 324 | 144 | 11 | 6 | 323 | 3 | 283 | 5.00e-33 | 124 |
| Msa0798830 | AT2G45880.1 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.80e-15 | 75.9 |
| Msa0798830 | AT5G45300.1 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.57e-14 | 73.6 |
| Msa0798830 | AT5G45300.3 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.80e-14 | 73.6 |
| Msa0798830 | AT5G45300.2 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.35e-13 | 72.0 |
Find 140 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCAATAACACCCAATT+TGG | 0.187555 | 5_3:-11780290 | None:intergenic |
| GATTCAGTTGTTTGCTATAA+TGG | 0.236232 | 5_3:+11780653 | Msa0798830:three_prime_UTR |
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5_3:+11778487 | Msa0798830:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5_3:-11779927 | None:intergenic |
| CAATAATGCAGTTACTTATA+TGG | 0.314332 | 5_3:-11780614 | None:intergenic |
| ATTCAGTTGTTTGCTATAAT+GGG | 0.317805 | 5_3:+11780654 | Msa0798830:three_prime_UTR |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5_3:-11779651 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5_3:-11779813 | None:intergenic |
| TAGTCAGGGAAATTCCAAAT+TGG | 0.334193 | 5_3:+11780276 | Msa0798830:three_prime_UTR |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5_3:-11779408 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5_3:-11779724 | None:intergenic |
| TTTCTCCTTGTATATTTGAT+TGG | 0.357908 | 5_3:+11780809 | Msa0798830:three_prime_UTR |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5_3:+11779398 | Msa0798830:CDS |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.376143 | 5_3:+11780104 | Msa0798830:CDS |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5_3:-11778538 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5_3:-11779429 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5_3:-11779402 | None:intergenic |
| GTCAAAATGTCATCAATAAG+AGG | 0.412824 | 5_3:-11780461 | None:intergenic |
| ATGAGATAGAAGAATGATAA+TGG | 0.416344 | 5_3:+11780836 | Msa0798830:three_prime_UTR |
| CTGCTACTTCTGCATTAGTC+AGG | 0.419516 | 5_3:+11780261 | Msa0798830:three_prime_UTR |
| CACCTTGTTACCCTTGGTCT+TGG | 0.424789 | 5_3:-11780427 | None:intergenic |
| AGTCAGGGAAATTCCAAATT+GGG | 0.427834 | 5_3:+11780277 | Msa0798830:three_prime_UTR |
| TCCACCGCCGGTCATCGTTC+CGG | 0.428343 | 5_3:-11778395 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5_3:-11779486 | None:intergenic |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5_3:+11778572 | Msa0798830:CDS |
| TTTAGAACACAAACTTAAGT+TGG | 0.435032 | 5_3:-11780148 | None:intergenic |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5_3:-11779612 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5_3:-11779768 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5_3:+11778403 | Msa0798830:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5_3:+11778568 | Msa0798830:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5_3:-11779905 | None:intergenic |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5_3:-11779568 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5_3:-11779516 | None:intergenic |
| TGGTGCAGAGGTAGCGAAAA+GGG | 0.473562 | 5_3:-11779748 | None:intergenic |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5_3:-11779883 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5_3:+11778388 | Msa0798830:exon |
| AAACTAGGAGAGTGTGAAAA+GGG | 0.481245 | 5_3:+11778221 | Msa0798830:five_prime_UTR |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5_3:+11779613 | Msa0798830:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5_3:-11779611 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5_3:+11780098 | Msa0798830:CDS |
| CAATATCACCTTGTTACCCT+TGG | 0.484481 | 5_3:-11780433 | None:intergenic |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5_3:-11779462 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.485353 | 5_3:-11779947 | None:intergenic |
| ATTGTTAGAGTCACGAGAAA+AGG | 0.485779 | 5_3:-11778339 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.486116 | 5_3:-11779946 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5_3:-11779800 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5_3:+11779821 | Msa0798830:CDS |
| AAAACTAGGAGAGTGTGAAA+AGG | 0.497607 | 5_3:+11778220 | Msa0798830:five_prime_UTR |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5_3:+11778394 | Msa0798830:exon |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5_3:-11779510 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5_3:+11780002 | Msa0798830:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5_3:-11779629 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5_3:-11779663 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5_3:-11779709 | None:intergenic |
| TGTTTGGAATGAGAGAAGAA+AGG | 0.513727 | 5_3:+11780716 | Msa0798830:three_prime_UTR |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5_3:-11779585 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5_3:+11779399 | Msa0798830:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5_3:-11779567 | None:intergenic |
| CGAGGTAGGAATGGAAGAGT+TGG | 0.519042 | 5_3:+11780085 | Msa0798830:CDS |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5_3:+11779978 | Msa0798830:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5_3:-11778422 | None:intergenic |
| CCTATCTCACCCAGAAAACC+AGG | 0.522742 | 5_3:-11780225 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5_3:+11779835 | Msa0798830:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5_3:-11779574 | None:intergenic |
| ATGGTGCAGAGGTAGCGAAA+AGG | 0.528695 | 5_3:-11779749 | None:intergenic |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5_3:+11778404 | Msa0798830:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5_3:-11779777 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5_3:-11779808 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5_3:-11779522 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5_3:-11779801 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5_3:+11778589 | Msa0798830:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5_3:-11779478 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5_3:-11779799 | None:intergenic |
| CTCTTGATAATTCATTACAC+TGG | 0.542614 | 5_3:+11780494 | Msa0798830:three_prime_UTR |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5_3:+11779838 | Msa0798830:CDS |
| GAGAATTCACGAGGTAGGAA+TGG | 0.546800 | 5_3:+11780076 | Msa0798830:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5_3:-11779900 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5_3:-11779640 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5_3:+11779534 | Msa0798830:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5_3:+11780045 | Msa0798830:CDS |
| TGAATTCTCTCACCTTCCCA+CGG | 0.561289 | 5_3:-11780062 | None:intergenic |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5_3:+11779839 | Msa0798830:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5_3:-11779906 | None:intergenic |
| GGGTGAGATAGGACATTGCT+CGG | 0.565960 | 5_3:+11780236 | Msa0798830:three_prime_UTR |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5_3:+11780099 | Msa0798830:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5_3:-11779884 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5_3:+11778502 | Msa0798830:CDS |
| TAATTAAGGAAGTGAAAACT+AGG | 0.570052 | 5_3:+11778206 | None:intergenic |
| TTGGAATGAGAGAAGAAAGG+AGG | 0.575997 | 5_3:+11780719 | Msa0798830:three_prime_UTR |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5_3:+11779938 | Msa0798830:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5_3:+11779530 | Msa0798830:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5_3:-11779581 | None:intergenic |
| TCTAAACTCTCTCTCTTCGC+CGG | 0.578398 | 5_3:+11778376 | Msa0798830:five_prime_UTR |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5_3:+11779831 | Msa0798830:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5_3:-11779776 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5_3:+11780050 | Msa0798830:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5_3:-11779540 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5_3:-11779485 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5_3:-11779805 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5_3:-11779897 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5_3:-11779628 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5_3:+11778419 | Msa0798830:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5_3:-11779509 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5_3:-11779531 | None:intergenic |
| GGTGAGAGAATTCACGAGGT+AGG | 0.595934 | 5_3:+11780071 | Msa0798830:CDS |
| TGCTACTTCTGCATTAGTCA+GGG | 0.598452 | 5_3:+11780262 | Msa0798830:three_prime_UTR |
| CAGTGTAATGAATTATCAAG+AGG | 0.605589 | 5_3:-11780493 | None:intergenic |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5_3:+11779867 | Msa0798830:CDS |
| GTATGAATGAAGCCATGCAA+TGG | 0.607575 | 5_3:+11779970 | Msa0798830:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5_3:-11779982 | None:intergenic |
| TACCAAGACCAAGGGTAACA+AGG | 0.610250 | 5_3:+11780425 | Msa0798830:three_prime_UTR |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5_3:-11779566 | None:intergenic |
| TCAAACCAATCAAATATACA+AGG | 0.617106 | 5_3:-11780814 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5_3:-11779530 | None:intergenic |
| GTGCAGAGGTAGCGAAAAGG+GGG | 0.619204 | 5_3:-11779746 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5_3:-11779468 | None:intergenic |
| TACTCAATTTACAAACACAA+AGG | 0.622892 | 5_3:-11780875 | None:intergenic |
| TTGAATCTTACCAAGACCAA+GGG | 0.624750 | 5_3:+11780417 | Msa0798830:three_prime_UTR |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5_3:+11779996 | Msa0798830:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5_3:-11779798 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5_3:+11778606 | Msa0798830:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5_3:-11779593 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5_3:-11779710 | None:intergenic |
| TTTGAATCTTACCAAGACCA+AGG | 0.633389 | 5_3:+11780416 | Msa0798830:three_prime_UTR |
| GGTGCAGAGGTAGCGAAAAG+GGG | 0.633761 | 5_3:-11779747 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5_3:-11779624 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5_3:+11779824 | Msa0798830:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5_3:-11779760 | None:intergenic |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5_3:-11779904 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5_3:-11778407 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5_3:+11780046 | Msa0798830:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5_3:+11778391 | Msa0798830:exon |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5_3:-11779492 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5_3:+11779402 | Msa0798830:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5_3:-11778419 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5_3:-11779627 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5_3:-11779660 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.720256 | 5_3:-11779945 | None:intergenic |
| TTACTCTTCAACAATCAACA+AGG | 0.722255 | 5_3:-11780391 | None:intergenic |
| GGAAGGTGAGAGAATTCACG+AGG | 0.745542 | 5_3:+11780067 | Msa0798830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5_3:11778933-11778952 | None:intergenic | 10.0% |
| !!! | TTTTCCAATTTAATAGTTTA+TGG | - | chr5_3:11779284-11779303 | None:intergenic | 15.0% |
| !!! | AAAGAAGTATCTACTAAAAA+AGG | + | chr5_3:11778253-11778272 | Msa0798830:five_prime_UTR | 20.0% |
| !! | AAGCAAGTTAGTTAAAAAAA+TGG | - | chr5_3:11778645-11778664 | None:intergenic | 20.0% |
| !! | ATTTAATAGTTTATGGTGTT+TGG | - | chr5_3:11779277-11779296 | None:intergenic | 20.0% |
| !! | AACACCATAAACTATTAAAT+TGG | + | chr5_3:11779277-11779296 | Msa0798830:intron | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5_3:11779907-11779926 | None:intergenic | 20.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5_3:11779908-11779927 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAGTTTGCTTTAT+TGG | + | chr5_3:11780591-11780610 | Msa0798830:three_prime_UTR | 20.0% |
| !!! | TTCAATTTTGATTCTTTGTT+TGG | + | chr5_3:11780700-11780719 | Msa0798830:three_prime_UTR | 20.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5_3:11778541-11778560 | None:intergenic | 25.0% |
| ! | AATCGATCTTATAAGAAACT+TGG | + | chr5_3:11778727-11778746 | Msa0798830:intron | 25.0% |
| ! | AATCGAAGTTAAATCAATTC+TGG | - | chr5_3:11778834-11778853 | None:intergenic | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5_3:11778833-11778852 | Msa0798830:intron | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5_3:11779368-11779387 | Msa0798830:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5_3:11779369-11779388 | Msa0798830:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5_3:11779909-11779928 | None:intergenic | 25.0% |
| !! | TTTAGAACACAAACTTAAGT+TGG | - | chr5_3:11780151-11780170 | None:intergenic | 25.0% |
| !!! | GAATCTGTAATTTTTTGGTA+CGG | - | chr5_3:11780181-11780200 | None:intergenic | 25.0% |
| !!! | CGATTGAATCTGTAATTTTT+TGG | - | chr5_3:11780186-11780205 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTTTATATAGCTG+TGG | + | chr5_3:11780326-11780345 | Msa0798830:three_prime_UTR | 25.0% |
| !!! | TTTTTGTAGTGTGTTTGTTA+TGG | + | chr5_3:11780533-11780552 | Msa0798830:three_prime_UTR | 25.0% |
| ! | CAATAATGCAGTTACTTATA+TGG | - | chr5_3:11780617-11780636 | None:intergenic | 25.0% |
| !!! | ATTCAGTTGTTTGCTATAAT+GGG | + | chr5_3:11780654-11780673 | Msa0798830:three_prime_UTR | 25.0% |
| ! | TTTCTCCTTGTATATTTGAT+TGG | + | chr5_3:11780809-11780828 | Msa0798830:three_prime_UTR | 25.0% |
| ! | TCAAACCAATCAAATATACA+AGG | - | chr5_3:11780817-11780836 | None:intergenic | 25.0% |
| ! | ATGAGATAGAAGAATGATAA+TGG | + | chr5_3:11780836-11780855 | Msa0798830:three_prime_UTR | 25.0% |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5_3:11778973-11778992 | None:intergenic | 30.0% | |
| CTGTTTAAGTCACATTAAGT+CGG | + | chr5_3:11779069-11779088 | Msa0798830:intron | 30.0% | |
| ! | TCGAAATCAATTTTTGTCAG+AGG | + | chr5_3:11779247-11779266 | Msa0798830:intron | 30.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5_3:11779399-11779418 | Msa0798830:CDS | 30.0% | |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5_3:11779712-11779731 | None:intergenic | 30.0% |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5_3:11779713-11779732 | None:intergenic | 30.0% |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5_3:11779903-11779922 | None:intergenic | 30.0% | |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5_3:11780026-11780045 | Msa0798830:CDS | 30.0% |
| !!! | AAGTTGGTTTTATCATGATC+AGG | - | chr5_3:11780135-11780154 | None:intergenic | 30.0% |
| TATTGCAATAACACCCAATT+TGG | - | chr5_3:11780293-11780312 | None:intergenic | 30.0% | |
| ! | TTTTATATAGCTGTGGTTAG+TGG | + | chr5_3:11780333-11780352 | Msa0798830:three_prime_UTR | 30.0% |
| TTACTCTTCAACAATCAACA+AGG | - | chr5_3:11780394-11780413 | None:intergenic | 30.0% | |
| GTCAAAATGTCATCAATAAG+AGG | - | chr5_3:11780464-11780483 | None:intergenic | 30.0% | |
| CAGTGTAATGAATTATCAAG+AGG | - | chr5_3:11780496-11780515 | None:intergenic | 30.0% | |
| ! | CTCTTGATAATTCATTACAC+TGG | + | chr5_3:11780494-11780513 | Msa0798830:three_prime_UTR | 30.0% |
| ACACACTACAAAAACTTAGT+TGG | - | chr5_3:11780527-11780546 | None:intergenic | 30.0% | |
| !! | GATTCAGTTGTTTGCTATAA+TGG | + | chr5_3:11780653-11780672 | Msa0798830:three_prime_UTR | 30.0% |
| ! | AAAACTAGGAGAGTGTGAAA+AGG | + | chr5_3:11778220-11778239 | Msa0798830:five_prime_UTR | 35.0% |
| ! | AAACTAGGAGAGTGTGAAAA+GGG | + | chr5_3:11778221-11778240 | Msa0798830:five_prime_UTR | 35.0% |
| ATTGTTAGAGTCACGAGAAA+AGG | - | chr5_3:11778342-11778361 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5_3:11778436-11778455 | None:intergenic | 35.0% |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5_3:11778487-11778506 | Msa0798830:CDS | 35.0% | |
| AGATGGTACTACTTATCGAA+AGG | + | chr5_3:11778606-11778625 | Msa0798830:CDS | 35.0% | |
| !! | CTTGGTTTTTGTGATCTAAG+TGG | + | chr5_3:11778745-11778764 | Msa0798830:intron | 35.0% |
| GAGACCATTACCAAATGAAA+TGG | + | chr5_3:11779398-11779417 | Msa0798830:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5_3:11779432-11779451 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5_3:11779596-11779615 | None:intergenic | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5_3:11779949-11779968 | None:intergenic | 35.0% | |
| AATTCCTCAAAAAGTTTGCC+TGG | + | chr5_3:11780207-11780226 | Msa0798830:three_prime_UTR | 35.0% | |
| ! | AAAACCAGGCAAACTTTTTG+AGG | - | chr5_3:11780214-11780233 | None:intergenic | 35.0% |
| !! | AAAAAGTTTGCCTGGTTTTC+TGG | + | chr5_3:11780215-11780234 | Msa0798830:three_prime_UTR | 35.0% |
| !! | AAAAGTTTGCCTGGTTTTCT+GGG | + | chr5_3:11780216-11780235 | Msa0798830:three_prime_UTR | 35.0% |
| TAGTCAGGGAAATTCCAAAT+TGG | + | chr5_3:11780276-11780295 | Msa0798830:three_prime_UTR | 35.0% | |
| AGTCAGGGAAATTCCAAATT+GGG | + | chr5_3:11780277-11780296 | Msa0798830:three_prime_UTR | 35.0% | |
| TTTGAATCTTACCAAGACCA+AGG | + | chr5_3:11780416-11780435 | Msa0798830:three_prime_UTR | 35.0% | |
| TTGAATCTTACCAAGACCAA+GGG | + | chr5_3:11780417-11780436 | Msa0798830:three_prime_UTR | 35.0% | |
| ! | TGTTTGGAATGAGAGAAGAA+AGG | + | chr5_3:11780716-11780735 | Msa0798830:three_prime_UTR | 35.0% |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5_3:11778425-11778444 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5_3:11778502-11778521 | Msa0798830:CDS | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5_3:11778568-11778587 | Msa0798830:CDS | 40.0% |
| ! | TTCATGTGCGTTTAGTTCAG+CGG | - | chr5_3:11779124-11779143 | None:intergenic | 40.0% |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5_3:11779405-11779424 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5_3:11779402-11779421 | Msa0798830:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5_3:11779465-11779484 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5_3:11779570-11779589 | None:intergenic | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5_3:11779584-11779603 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5_3:11779588-11779607 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5_3:11779614-11779633 | None:intergenic | 40.0% |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5_3:11779631-11779650 | None:intergenic | 40.0% | |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5_3:11779678-11779697 | None:intergenic | 40.0% |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5_3:11779900-11779919 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5_3:11779948-11779967 | None:intergenic | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5_3:11779950-11779969 | None:intergenic | 40.0% | |
| GTATGAATGAAGCCATGCAA+TGG | + | chr5_3:11779970-11779989 | Msa0798830:CDS | 40.0% | |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5_3:11780099-11780118 | Msa0798830:CDS | 40.0% | |
| ! | TGCTACTTCTGCATTAGTCA+GGG | + | chr5_3:11780262-11780281 | Msa0798830:three_prime_UTR | 40.0% |
| CAATATCACCTTGTTACCCT+TGG | - | chr5_3:11780436-11780455 | None:intergenic | 40.0% | |
| TTGGAATGAGAGAAGAAAGG+AGG | + | chr5_3:11780719-11780738 | Msa0798830:three_prime_UTR | 40.0% | |
| TCTAAACTCTCTCTCTTCGC+CGG | + | chr5_3:11778376-11778395 | Msa0798830:five_prime_UTR | 45.0% | |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5_3:11778572-11778591 | Msa0798830:CDS | 45.0% |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5_3:11778589-11778608 | Msa0798830:CDS | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5_3:11779411-11779430 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5_3:11779471-11779490 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5_3:11779488-11779507 | None:intergenic | 45.0% | |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5_3:11779489-11779508 | None:intergenic | 45.0% | |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5_3:11779512-11779531 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5_3:11779513-11779532 | None:intergenic | 45.0% |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5_3:11779519-11779538 | None:intergenic | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5_3:11779543-11779562 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5_3:11779569-11779588 | None:intergenic | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5_3:11779571-11779590 | None:intergenic | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5_3:11779615-11779634 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5_3:11779613-11779632 | Msa0798830:CDS | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5_3:11779630-11779649 | None:intergenic | 45.0% | |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5_3:11779632-11779651 | None:intergenic | 45.0% |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5_3:11779666-11779685 | None:intergenic | 45.0% | |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5_3:11779811-11779830 | None:intergenic | 45.0% |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5_3:11779821-11779840 | Msa0798830:CDS | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5_3:11779867-11779886 | Msa0798830:CDS | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5_3:11780065-11780084 | None:intergenic | 45.0% | |
| GAGAATTCACGAGGTAGGAA+TGG | + | chr5_3:11780076-11780095 | Msa0798830:CDS | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5_3:11780098-11780117 | Msa0798830:CDS | 45.0% | |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5_3:11780104-11780123 | Msa0798830:CDS | 45.0% |
| ! | CTGCTACTTCTGCATTAGTC+AGG | + | chr5_3:11780261-11780280 | Msa0798830:three_prime_UTR | 45.0% |
| TACCAAGACCAAGGGTAACA+AGG | + | chr5_3:11780425-11780444 | Msa0798830:three_prime_UTR | 45.0% | |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5_3:11779481-11779500 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5_3:11779525-11779544 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5_3:11779577-11779596 | None:intergenic | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5_3:11779627-11779646 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5_3:11779654-11779673 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5_3:11779663-11779682 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5_3:11779727-11779746 | None:intergenic | 50.0% | |
| TGGTGCAGAGGTAGCGAAAA+GGG | - | chr5_3:11779751-11779770 | None:intergenic | 50.0% | |
| ATGGTGCAGAGGTAGCGAAA+AGG | - | chr5_3:11779752-11779771 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5_3:11779779-11779798 | None:intergenic | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5_3:11779801-11779820 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5_3:11779802-11779821 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5_3:11779803-11779822 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5_3:11779804-11779823 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5_3:11779808-11779827 | None:intergenic | 50.0% |
| GCATCTGACTCATCGCATTC+TGG | - | chr5_3:11779816-11779835 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5_3:11779824-11779843 | Msa0798830:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5_3:11779985-11780004 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5_3:11780002-11780021 | Msa0798830:CDS | 50.0% | |
| GGAAGGTGAGAGAATTCACG+AGG | + | chr5_3:11780067-11780086 | Msa0798830:CDS | 50.0% | |
| GGTGAGAGAATTCACGAGGT+AGG | + | chr5_3:11780071-11780090 | Msa0798830:CDS | 50.0% | |
| CGAGGTAGGAATGGAAGAGT+TGG | + | chr5_3:11780085-11780104 | Msa0798830:CDS | 50.0% | |
| CCTATCTCACCCAGAAAACC+AGG | - | chr5_3:11780228-11780247 | None:intergenic | 50.0% | |
| !! | CCTGGTTTTCTGGGTGAGAT+AGG | + | chr5_3:11780225-11780244 | Msa0798830:three_prime_UTR | 50.0% |
| GGGTGAGATAGGACATTGCT+CGG | + | chr5_3:11780236-11780255 | Msa0798830:three_prime_UTR | 50.0% | |
| CACCTTGTTACCCTTGGTCT+TGG | - | chr5_3:11780430-11780449 | None:intergenic | 50.0% | |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5_3:11778422-11778441 | None:intergenic | 55.0% |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5_3:11778419-11778438 | Msa0798830:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5_3:11779495-11779514 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5_3:11779533-11779552 | None:intergenic | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5_3:11779534-11779553 | None:intergenic | 55.0% |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5_3:11779534-11779553 | Msa0798830:CDS | 55.0% | |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5_3:11779643-11779662 | None:intergenic | 55.0% |
| GTGCAGAGGTAGCGAAAAGG+GGG | - | chr5_3:11779749-11779768 | None:intergenic | 55.0% | |
| GGTGCAGAGGTAGCGAAAAG+GGG | - | chr5_3:11779750-11779769 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5_3:11779771-11779790 | None:intergenic | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5_3:11779780-11779799 | None:intergenic | 55.0% | |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5_3:11779794-11779813 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5_3:11779831-11779850 | Msa0798830:CDS | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5_3:11779835-11779854 | Msa0798830:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5_3:11779839-11779858 | Msa0798830:CDS | 55.0% |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5_3:11779930-11779949 | None:intergenic | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5_3:11779938-11779957 | Msa0798830:CDS | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5_3:11779978-11779997 | Msa0798830:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5_3:11779996-11780015 | Msa0798830:CDS | 55.0% | |
| CTCTTCGCCGGAACGATGAC+CGG | + | chr5_3:11778388-11778407 | Msa0798830:exon | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5_3:11779530-11779549 | Msa0798830:CDS | 60.0% | |
| GAAAAGGGGGTGGCGAAACG+TGG | - | chr5_3:11779736-11779755 | None:intergenic | 60.0% | |
| CAGAGGTAGCGAAAAGGGGG+TGG | - | chr5_3:11779746-11779765 | None:intergenic | 60.0% | |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5_3:11779763-11779782 | None:intergenic | 60.0% |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5_3:11779838-11779857 | Msa0798830:CDS | 60.0% |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5_3:11779886-11779905 | None:intergenic | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5_3:11780045-11780064 | Msa0798830:CDS | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5_3:11780046-11780065 | Msa0798830:CDS | 60.0% | |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5_3:11780050-11780069 | Msa0798830:CDS | 60.0% | |
| TTCGCCGGAACGATGACCGG+CGG | + | chr5_3:11778391-11778410 | Msa0798830:exon | 65.0% | |
| TCCACCGCCGGTCATCGTTC+CGG | - | chr5_3:11778398-11778417 | None:intergenic | 65.0% | |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5_3:11778403-11778422 | Msa0798830:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5_3:11779887-11779906 | None:intergenic | 65.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5_3:11778404-11778423 | Msa0798830:CDS | 70.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5_3:11778410-11778429 | None:intergenic | 70.0% | |
| GCCGGAACGATGACCGGCGG+TGG | + | chr5_3:11778394-11778413 | Msa0798830:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11778219 | 11780889 | 11778219 | ID=Msa0798830;Name=Msa0798830 |
| chr5_3 | mRNA | 11778219 | 11780889 | 11778219 | ID=Msa0798830-mRNA-1;Parent=Msa0798830;Name=Msa0798830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|753|323 |
| chr5_3 | exon | 11778219 | 11778627 | 11778219 | ID=Msa0798830-mRNA-1:exon:4819;Parent=Msa0798830-mRNA-1 |
| chr5_3 | exon | 11779390 | 11780889 | 11779390 | ID=Msa0798830-mRNA-1:exon:4820;Parent=Msa0798830-mRNA-1 |
| chr5_3 | five_prime_UTR | 11778219 | 11778402 | 11778219 | ID=Msa0798830-mRNA-1:five_prime_utr;Parent=Msa0798830-mRNA-1 |
| chr5_3 | CDS | 11778403 | 11778627 | 11778403 | ID=Msa0798830-mRNA-1:cds;Parent=Msa0798830-mRNA-1 |
| chr5_3 | CDS | 11779390 | 11780136 | 11779390 | ID=Msa0798830-mRNA-1:cds;Parent=Msa0798830-mRNA-1 |
| chr5_3 | three_prime_UTR | 11780137 | 11780889 | 11780137 | ID=Msa0798830-mRNA-1:three_prime_utr;Parent=Msa0798830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
