AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235770 MtrunA17_Chr8g0345771 92.748 524 22 7 17 531 1 517 0.0 861
Msa1235770 MtrunA17_Chr7g0276471 90.741 108 10 0 185 292 116 223 5.18e-65 218
Msa1235770 MtrunA17_Chr1g0178071 70.796 113 29 2 182 292 71 181 8.99e-48 169
Msa1235770 MtrunA17_Chr5g0422501 43.277 238 85 8 94 295 127 350 2.88e-47 170
Msa1235770 MtrunA17_Chr7g0266821 73.333 105 25 2 191 295 65 166 7.05e-46 162
Msa1235770 MtrunA17_Chr1g0198661 62.602 123 31 2 183 292 188 308 7.90e-43 157
Msa1235770 MtrunA17_Chr1g0213701 52.427 103 43 2 172 274 150 246 9.07e-28 113
Msa1235770 MtrunA17_Chr4g0012861 36.134 119 68 4 186 302 314 426 2.01e-15 79.7
Msa1235770 MtrunA17_Chr2g0281191 38.182 110 60 4 186 293 352 455 1.98e-14 76.6
Msa1235770 MtrunA17_Chr5g0432721 39.560 91 50 3 186 274 321 408 7.64e-14 74.3
Msa1235770 MtrunA17_Chr3g0107701 39.560 91 50 3 186 274 338 425 2.78e-13 72.8
Msa1235770 MtrunA17_Chr7g0244871 39.326 89 49 3 186 272 12 97 9.58e-13 64.7
Msa1235770 MtrunA17_Chr4g0046371 40.206 97 56 2 185 279 146 242 3.49e-12 69.3
Msa1235770 MtrunA17_Chr2g0282961 35.897 117 73 2 165 279 136 252 4.93e-12 68.6
Msa1235770 MtrunA17_Chr3g0115271 31.618 136 80 3 156 290 94 217 1.48e-11 67.0
Msa1235770 MtrunA17_Chr2g0326761 37.624 101 61 2 182 280 103 203 1.70e-11 67.0
Msa1235770 MtrunA17_Chr1g0199681 35.052 97 62 1 180 275 186 282 8.14e-11 64.7
Msa1235770 MtrunA17_Chr7g0264171 32.540 126 80 2 180 304 124 245 8.24e-11 64.7
Msa1235770 MtrunA17_Chr4g0028971 39.000 100 59 2 182 279 104 203 9.06e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235770 AT2G46870.1 47.651 298 92 9 173 469 21 255 3.93e-75 240
Msa1235770 AT1G01030.1 47.458 295 92 9 182 464 51 294 5.08e-67 221
Msa1235770 AT3G61970.1 43.791 306 91 11 167 469 3 230 7.56e-66 216
Msa1235770 AT1G01030.2 85.586 111 15 1 182 291 51 161 3.94e-62 207
Msa1235770 AT4G01500.1 36.857 350 146 9 179 508 28 322 5.54e-53 183
Msa1235770 AT3G11580.4 66.116 121 28 2 182 291 24 142 1.38e-48 168
Msa1235770 AT3G11580.2 66.116 121 28 2 182 291 24 142 1.38e-48 168
Msa1235770 AT3G11580.5 66.116 121 28 2 182 291 24 142 1.38e-48 168
Msa1235770 AT1G68840.2 44.240 217 95 5 94 292 85 293 3.42e-48 171
Msa1235770 AT1G68840.1 44.240 217 95 5 94 292 85 293 3.42e-48 171
Msa1235770 AT3G11580.1 65.574 122 29 2 182 292 24 143 3.57e-48 168
Msa1235770 AT5G06250.5 59.559 136 43 2 183 308 42 175 2.62e-47 166
Msa1235770 AT3G11580.3 64.516 124 31 2 179 291 21 142 3.82e-47 168
Msa1235770 AT5G06250.2 67.227 119 27 2 183 291 42 158 4.44e-47 166
Msa1235770 AT5G06250.4 67.227 119 27 2 183 291 42 158 4.73e-47 166
Msa1235770 AT1G13260.1 41.558 231 89 7 94 295 82 295 6.80e-47 167
Msa1235770 AT5G06250.1 59.559 136 43 2 183 308 42 175 1.09e-46 164
Msa1235770 AT5G06250.3 59.559 136 43 2 183 308 42 175 1.20e-46 164
Msa1235770 AT2G36080.4 68.103 116 32 2 180 292 31 144 1.97e-45 157
Msa1235770 AT2G36080.2 68.103 116 32 2 180 292 31 144 1.97e-45 157
Msa1235770 AT2G36080.3 69.912 113 29 2 182 291 33 143 2.20e-45 159
Msa1235770 AT2G36080.1 69.912 113 29 2 182 291 33 143 2.56e-45 160
Msa1235770 AT1G25560.1 63.025 119 34 2 183 293 191 307 5.50e-44 160
Msa1235770 AT3G25730.1 41.892 222 92 7 94 292 82 289 1.71e-43 157
Msa1235770 AT1G50680.1 32.271 251 123 9 65 272 7 253 7.92e-26 108
Msa1235770 AT1G51120.1 34.634 205 102 6 97 272 70 271 1.53e-24 105
Msa1235770 AT4G32010.1 38.182 110 60 4 186 293 285 388 2.69e-15 79.7
Msa1235770 AT4G32010.2 38.182 110 60 4 186 293 281 384 2.80e-15 79.3
Msa1235770 AT2G30470.1 39.560 91 50 3 186 274 294 381 5.41e-14 75.5
Msa1235770 AT1G35240.1 40.496 121 63 5 187 305 126 239 3.94e-13 72.4
Msa1235770 AT1G35520.1 39.669 121 64 5 187 305 126 239 2.33e-12 70.1
Msa1235770 AT1G34310.1 38.843 121 65 5 187 305 126 239 4.33e-12 68.9
Msa1235770 AT2G33860.1 40.217 92 54 1 185 275 157 248 1.50e-11 67.4
Msa1235770 AT1G35540.1 38.843 121 65 5 187 305 126 239 1.85e-11 67.0
Msa1235770 AT1G34410.1 38.017 121 66 5 187 305 126 239 2.48e-11 66.6
Msa1235770 AT5G60450.2 29.801 151 97 2 132 281 106 248 7.33e-11 65.5
Msa1235770 AT5G60450.1 29.801 151 97 2 132 281 130 272 7.91e-11 65.5

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATTTAGATACTCTTAT+TGG 0.204888 8_2:-13994450 Msa1235770:CDS
TTATCAAGTCAAATTCTTCT+TGG 0.232204 8_2:+13995136 None:intergenic
ATGTTTCCATTTCATCAATA+TGG 0.246411 8_2:-13994076 Msa1235770:CDS
TTTAAAGCAAATAGATTTCA+TGG 0.253920 8_2:-13994743 Msa1235770:CDS
AACAACAATATTCTATTAGA+TGG 0.265622 8_2:-13994213 Msa1235770:CDS
GCAGCATCTAAAGGAGGATT+AGG 0.296328 8_2:-13994817 Msa1235770:CDS
ATAGAATATTGTTGTTGATT+AGG 0.302183 8_2:+13994220 None:intergenic
AATTCATCTGATTGTGTAAA+GGG 0.302465 8_2:+13994110 None:intergenic
GGCATAGGTTGTTTATAGAT+TGG 0.332546 8_2:-13994315 Msa1235770:CDS
CTACTAATGGTGCTGCAAAA+AGG 0.355470 8_2:-13993820 Msa1235770:CDS
GCTGCTGAATTGTGAGATTC+TGG 0.358440 8_2:+13994835 None:intergenic
TTATTCACAAGAAGAATTAG+AGG 0.367007 8_2:-13995082 Msa1235770:CDS
CCACCACCATATTGATGAAA+TGG 0.378629 8_2:+13994070 None:intergenic
GAAGATAAAGAGAAATTAGA+AGG 0.384050 8_2:+13994964 None:intergenic
TGCTGATGTTGTAACCTTTG+TGG 0.393602 8_2:+13994148 None:intergenic
TGTTCTTGTTGTTGTGGAAC+AGG 0.398968 8_2:+13994667 None:intergenic
CAACAAGAAGGAGGAGGAGG+AGG 0.405771 8_2:-13993935 Msa1235770:CDS
ATTTGACTTGATAATTATCA+TGG 0.414547 8_2:-13995127 Msa1235770:CDS
CAAAGCTATGTTATGACAAA+AGG 0.424983 8_2:-13994418 Msa1235770:CDS
GCGGCGTCGGCGAATTGTTT+AGG 0.427168 8_2:-13994336 Msa1235770:CDS
CTTTAAATTTGTGAAATTTG+AGG 0.440342 8_2:+13994759 None:intergenic
TGTTGTAACCTTTGTGGTGT+TGG 0.444187 8_2:+13994154 None:intergenic
TTCAACAAGTGATGATAACT+TGG 0.444286 8_2:-13993756 Msa1235770:CDS
GCTACTACTAGTACTACTAA+TGG 0.446131 8_2:-13993833 Msa1235770:CDS
TGTTGGGAAACTAAACCGTT+TGG 0.462142 8_2:-13994572 Msa1235770:CDS
TGATGATGATAATGAGAAAC+AGG 0.463873 8_2:+13993878 None:intergenic
TGTTGATTAGGAAGAAAGAA+AGG 0.468194 8_2:+13994232 None:intergenic
AAATTCATCTGATTGTGTAA+AGG 0.468921 8_2:+13994109 None:intergenic
TCATTTGATGTTGAATCAAG+TGG 0.470685 8_2:+13994517 None:intergenic
ACCATCACTTCAACATTTGA+AGG 0.471635 8_2:-13993714 Msa1235770:CDS
ATAGGTTGTTTATAGATTGG+AGG 0.472973 8_2:-13994312 Msa1235770:CDS
AACCTTTGTGGTGTTGGATA+AGG 0.473019 8_2:+13994160 None:intergenic
GTTGTAACACCAAGTGATGT+TGG 0.474361 8_2:-13994589 Msa1235770:CDS
ACAACAATATTCTATTAGAT+GGG 0.482618 8_2:-13994212 Msa1235770:CDS
CATTACTAGTTAAATTTCCA+TGG 0.483330 8_2:+13993855 None:intergenic
TTGCATCTTGATGTTGGTGA+TGG 0.485306 8_2:+13994785 None:intergenic
CAGCATCTAAAGGAGGATTA+GGG 0.488321 8_2:-13994816 Msa1235770:CDS
CAGCAACAAGAAGGAGGAGG+AGG 0.488402 8_2:-13993938 Msa1235770:CDS
AAGATAGAAATGGAAAATTG+TGG 0.489600 8_2:-13994471 Msa1235770:CDS
TTGTAACACCAAGTGATGTT+GGG 0.490137 8_2:-13994588 Msa1235770:CDS
TCTTGTTGTTCTTGTTGTTG+TGG 0.492978 8_2:+13994661 None:intergenic
TCGGCGAATTGTTTAGGCAT+AGG 0.495937 8_2:-13994330 Msa1235770:CDS
TTTCTCATCAACAAAATCAA+TGG 0.499739 8_2:-13994888 Msa1235770:CDS
CACAATTCAGCAGCATCTAA+AGG 0.501419 8_2:-13994826 Msa1235770:CDS
CTTCCTTGAGGCATTGATGA+TGG 0.504465 8_2:+13993974 None:intergenic
CCATTTCATCAATATGGTGG+TGG 0.507266 8_2:-13994070 Msa1235770:CDS
AACATCAACAAGATTTGAAG+AGG 0.528740 8_2:-13993660 Msa1235770:CDS
CATCAACAAAATCAATGGCT+AGG 0.531892 8_2:-13994883 Msa1235770:CDS
GATAAAGAGAAATTAGAAGG+TGG 0.541995 8_2:+13994967 None:intergenic
AAGGTTGTTTGGTGTGAACA+TGG 0.542303 8_2:-13993795 Msa1235770:CDS
GCTATGTTATGACAAAAGGT+TGG 0.544721 8_2:-13994414 Msa1235770:CDS
TTTAGTTTCCCAACATCACT+TGG 0.546847 8_2:+13994580 None:intergenic
GATTCAACATCAAATGAGAA+AGG 0.548994 8_2:-13994511 Msa1235770:CDS
TTATGATGATGAGTTGTTGA+AGG 0.549913 8_2:+13994934 None:intergenic
AGTGATGGTACTATTGAAGA+AGG 0.553751 8_2:+13993728 None:intergenic
ACCTTCAAATGTTGAAGTGA+TGG 0.554721 8_2:+13993713 None:intergenic
GAAAGTGTTTCTTCATGATG+AGG 0.555132 8_2:+13993689 None:intergenic
TTTCCATTTCATCAATATGG+TGG 0.556128 8_2:-13994073 Msa1235770:CDS
TTTGGTGTGAACATGGAGTG+TGG 0.563933 8_2:-13993788 Msa1235770:CDS
GTGAAAAGTGTTGCTGATGA+AGG 0.570944 8_2:+13994256 None:intergenic
GTTTCATTTCAACGCGGCGT+CGG 0.571504 8_2:-13994349 Msa1235770:CDS
AGGTTGTTGCATCTTGATGT+TGG 0.573287 8_2:+13994779 None:intergenic
TGAGGCATTGATGATGGTGC+TGG 0.585946 8_2:+13993980 None:intergenic
AGTACAAGACAGCAACAAGA+AGG 0.600583 8_2:-13993947 Msa1235770:CDS
CAATATTCTATTAGATGGGG+AGG 0.609587 8_2:-13994208 Msa1235770:CDS
AGACAGCAACAAGAAGGAGG+AGG 0.619946 8_2:-13993941 Msa1235770:CDS
GATTTCATGGAATTGTCACT+AGG 0.623329 8_2:-13994730 Msa1235770:CDS
TTCCTTATCCAACACCACAA+AGG 0.633231 8_2:-13994162 Msa1235770:CDS
ACAAGACAGCAACAAGAAGG+AGG 0.633565 8_2:-13993944 Msa1235770:CDS
CAACAATATTCTATTAGATG+GGG 0.645043 8_2:-13994211 Msa1235770:CDS
GCACCATCATCAATGCCTCA+AGG 0.646120 8_2:-13993977 Msa1235770:CDS
TCTCATTATCATCATCACCA+TGG 0.646213 8_2:-13993872 Msa1235770:CDS
CTTGTACTCAAGCTTCCTTG+AGG 0.650771 8_2:+13993962 None:intergenic
GGTGTGAACATGGAGTGTGG+TGG 0.666596 8_2:-13993785 Msa1235770:CDS
TCTTGTTGTTGTGGAACAGG+AGG 0.666596 8_2:+13994670 None:intergenic
AATTCAGCAGCATCTAAAGG+AGG 0.671535 8_2:-13994823 Msa1235770:CDS
GACATTGTTTCATTTCAACG+CGG 0.724243 8_2:-13994355 Msa1235770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGGTTATTAAAAAAAATAT+GGG + chr8_2:13993637-13993656 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr8_2:13993638-13993657 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr8_2:13993685-13993704 None:intergenic 15.0%
!! AAAAAAATTGTATATGATGA+GGG + chr8_2:13993744-13993763 None:intergenic 15.0%
!! AAAAAAAATTGTATATGATG+AGG + chr8_2:13993745-13993764 None:intergenic 15.0%
!! TGGGTTATTAAAAAAAATAT+GGG + chr8_2:13993637-13993656 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr8_2:13993638-13993657 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr8_2:13993685-13993704 None:intergenic 15.0%
!! AAAAAAATTGTATATGATGA+GGG + chr8_2:13993744-13993763 None:intergenic 15.0%
!! AAAAAAAATTGTATATGATG+AGG + chr8_2:13993745-13993764 None:intergenic 15.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr8_2:13993580-13993599 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr8_2:13993636-13993655 None:intergenic 20.0%
!! TTGACGGAAAAAAATATATT+GGG + chr8_2:13993656-13993675 None:intergenic 20.0%
!! TTTGACGGAAAAAAATATAT+TGG + chr8_2:13993657-13993676 None:intergenic 20.0%
!!! AATAAAGTGGAAAATTTTGA+CGG + chr8_2:13993672-13993691 None:intergenic 20.0%
!! AAAAAATTGTATATGATGAG+GGG + chr8_2:13993743-13993762 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr8_2:13993837-13993856 Msa1235770:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr8_2:13994208-13994227 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr8_2:13994221-13994240 Msa1235770:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr8_2:13994578-13994597 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr8_2:13994747-13994766 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr8_2:13994751-13994770 Msa1235770:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr8_2:13994752-13994771 Msa1235770:CDS 20.0%
!!! ATTTTAGTACTATTTAGAAG+TGG - chr8_2:13995515-13995534 Msa1235770:intron 20.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr8_2:13993580-13993599 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr8_2:13993636-13993655 None:intergenic 20.0%
!! TTGACGGAAAAAAATATATT+GGG + chr8_2:13993656-13993675 None:intergenic 20.0%
!! TTTGACGGAAAAAAATATAT+TGG + chr8_2:13993657-13993676 None:intergenic 20.0%
!!! AATAAAGTGGAAAATTTTGA+CGG + chr8_2:13993672-13993691 None:intergenic 20.0%
!! AAAAAATTGTATATGATGAG+GGG + chr8_2:13993743-13993762 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr8_2:13993837-13993856 Msa1235770:CDS 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr8_2:13994208-13994227 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr8_2:13994221-13994240 Msa1235770:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr8_2:13994578-13994597 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr8_2:13994747-13994766 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr8_2:13994751-13994770 Msa1235770:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr8_2:13994752-13994771 Msa1235770:CDS 20.0%
!!! ATTTTAGTACTATTTAGAAG+TGG - chr8_2:13995515-13995534 Msa1235770:intron 20.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG - chr8_2:13993439-13993458 Msa1235770:three_prime_UTR 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG - chr8_2:13993440-13993459 Msa1235770:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr8_2:13993514-13993533 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr8_2:13993541-13993560 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr8_2:13993553-13993572 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr8_2:13993554-13993573 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr8_2:13993568-13993587 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr8_2:13993567-13993586 Msa1235770:exon 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr8_2:13993831-13993850 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr8_2:13993882-13993901 Msa1235770:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr8_2:13994003-13994022 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr8_2:13994076-13994095 Msa1235770:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr8_2:13994483-13994502 Msa1235770:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr8_2:13994493-13994512 Msa1235770:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr8_2:13994753-13994772 Msa1235770:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG + chr8_2:13994857-13994876 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG + chr8_2:13994858-13994877 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr8_2:13994888-13994907 Msa1235770:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr8_2:13994957-13994976 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr8_2:13995112-13995131 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr8_2:13995394-13995413 None:intergenic 25.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG - chr8_2:13993439-13993458 Msa1235770:three_prime_UTR 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG - chr8_2:13993440-13993459 Msa1235770:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr8_2:13993514-13993533 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr8_2:13993541-13993560 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr8_2:13993553-13993572 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr8_2:13993554-13993573 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr8_2:13993568-13993587 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr8_2:13993567-13993586 Msa1235770:exon 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr8_2:13993831-13993850 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr8_2:13993882-13993901 Msa1235770:CDS 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr8_2:13994003-13994022 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr8_2:13994076-13994095 Msa1235770:CDS 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr8_2:13994483-13994502 Msa1235770:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr8_2:13994493-13994512 Msa1235770:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr8_2:13994753-13994772 Msa1235770:CDS 25.0%
! AATTCATCTGATTGTGTAAA+GGG + chr8_2:13994857-13994876 None:intergenic 25.0%
! AAATTCATCTGATTGTGTAA+AGG + chr8_2:13994858-13994877 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr8_2:13994888-13994907 Msa1235770:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr8_2:13994957-13994976 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr8_2:13995112-13995131 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr8_2:13995394-13995413 None:intergenic 25.0%
CTTCTCTTAGTCAAATATGA+AGG - chr8_2:13993470-13993489 Msa1235770:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr8_2:13994000-13994019 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr8_2:13994033-13994052 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr8_2:13994342-13994361 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr8_2:13994410-13994429 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr8_2:13994423-13994442 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr8_2:13994450-13994469 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr8_2:13994453-13994472 Msa1235770:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr8_2:13994514-13994533 Msa1235770:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr8_2:13994548-13994567 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr8_2:13994546-13994565 Msa1235770:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr8_2:13994585-13994604 Msa1235770:CDS 30.0%
ATAGGTTGTTTATAGATTGG+AGG - chr8_2:13994652-13994671 Msa1235770:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr8_2:13994735-13994754 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr8_2:13994891-13994910 Msa1235770:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr8_2:13995089-13995108 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr8_2:13995208-13995227 Msa1235770:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr8_2:13995304-13995323 Msa1235770:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr8_2:13995338-13995357 Msa1235770:intron 30.0%
CTTCTCTTAGTCAAATATGA+AGG - chr8_2:13993470-13993489 Msa1235770:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr8_2:13994000-13994019 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr8_2:13994033-13994052 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr8_2:13994342-13994361 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr8_2:13994410-13994429 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr8_2:13994423-13994442 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr8_2:13994450-13994469 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr8_2:13994453-13994472 Msa1235770:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr8_2:13994514-13994533 Msa1235770:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr8_2:13994548-13994567 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr8_2:13994546-13994565 Msa1235770:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr8_2:13994585-13994604 Msa1235770:CDS 30.0%
ATAGGTTGTTTATAGATTGG+AGG - chr8_2:13994652-13994671 Msa1235770:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr8_2:13994735-13994754 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr8_2:13994891-13994910 Msa1235770:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr8_2:13995089-13995108 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr8_2:13995208-13995227 Msa1235770:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr8_2:13995304-13995323 Msa1235770:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr8_2:13995338-13995357 Msa1235770:intron 30.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr8_2:13993498-13993517 None:intergenic 35.0%
AAATTGTATATGATGAGGGG+AGG + chr8_2:13993740-13993759 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr8_2:13994081-13994100 Msa1235770:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG - chr8_2:13994234-13994253 Msa1235770:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG + chr8_2:13994306-13994325 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr8_2:13994376-13994395 Msa1235770:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr8_2:13994387-13994406 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr8_2:13994550-13994569 Msa1235770:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr8_2:13994609-13994628 Msa1235770:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr8_2:13994649-13994668 Msa1235770:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr8_2:13994756-13994775 Msa1235770:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr8_2:13995092-13995111 Msa1235770:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr8_2:13995131-13995150 Msa1235770:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr8_2:13995158-13995177 Msa1235770:intron 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr8_2:13995239-13995258 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr8_2:13995250-13995269 Msa1235770:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr8_2:13995254-13995273 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG + chr8_2:13995278-13995297 None:intergenic 35.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr8_2:13993498-13993517 None:intergenic 35.0%
AAATTGTATATGATGAGGGG+AGG + chr8_2:13993740-13993759 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr8_2:13994081-13994100 Msa1235770:CDS 35.0%
GATTTCATGGAATTGTCACT+AGG - chr8_2:13994234-13994253 Msa1235770:CDS 35.0%
!! TCTTGTTGTTCTTGTTGTTG+TGG + chr8_2:13994306-13994325 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr8_2:13994376-13994395 Msa1235770:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr8_2:13994387-13994406 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr8_2:13994550-13994569 Msa1235770:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr8_2:13994609-13994628 Msa1235770:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr8_2:13994649-13994668 Msa1235770:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr8_2:13994756-13994775 Msa1235770:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr8_2:13995092-13995111 Msa1235770:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr8_2:13995131-13995150 Msa1235770:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr8_2:13995158-13995177 Msa1235770:intron 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr8_2:13995239-13995258 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr8_2:13995250-13995269 Msa1235770:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr8_2:13995254-13995273 None:intergenic 35.0%
!! GAAAGTGTTTCTTCATGATG+AGG + chr8_2:13995278-13995297 None:intergenic 35.0%
GGAGAATTATGAGGCTGTAA+AGG + chr8_2:13993532-13993551 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr8_2:13994138-13994157 Msa1235770:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr8_2:13994141-13994160 Msa1235770:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr8_2:13994148-13994167 Msa1235770:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr8_2:13994182-13994201 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr8_2:13994188-13994207 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr8_2:13994300-13994319 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr8_2:13994375-13994394 Msa1235770:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr8_2:13994392-13994411 Msa1235770:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr8_2:13994711-13994730 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr8_2:13994802-13994821 Msa1235770:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr8_2:13994807-13994826 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr8_2:13994813-13994832 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr8_2:13994819-13994838 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr8_2:13994897-13994916 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr8_2:13994894-13994913 Msa1235770:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr8_2:13995017-13995036 Msa1235770:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr8_2:13995144-13995163 Msa1235770:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr8_2:13995150-13995169 Msa1235770:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr8_2:13995169-13995188 Msa1235770:intron 40.0%
GGAGAATTATGAGGCTGTAA+AGG + chr8_2:13993532-13993551 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr8_2:13994138-13994157 Msa1235770:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr8_2:13994141-13994160 Msa1235770:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr8_2:13994148-13994167 Msa1235770:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr8_2:13994182-13994201 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr8_2:13994188-13994207 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr8_2:13994300-13994319 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr8_2:13994375-13994394 Msa1235770:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr8_2:13994392-13994411 Msa1235770:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr8_2:13994711-13994730 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr8_2:13994802-13994821 Msa1235770:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr8_2:13994807-13994826 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr8_2:13994813-13994832 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr8_2:13994819-13994838 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr8_2:13994897-13994916 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr8_2:13994894-13994913 Msa1235770:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr8_2:13995017-13995036 Msa1235770:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr8_2:13995144-13995163 Msa1235770:CDS 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr8_2:13995150-13995169 Msa1235770:CDS 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr8_2:13995169-13995188 Msa1235770:intron 40.0%
GCTGCTGAATTGTGAGATTC+TGG + chr8_2:13994132-13994151 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr8_2:13994147-13994166 Msa1235770:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr8_2:13994297-13994316 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr8_2:13994634-13994653 Msa1235770:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr8_2:13994993-13995012 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr8_2:13995005-13995024 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr8_2:13995020-13995039 Msa1235770:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr8_2:13995176-13995195 Msa1235770:intron 45.0%
GCTGCTGAATTGTGAGATTC+TGG + chr8_2:13994132-13994151 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr8_2:13994147-13994166 Msa1235770:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr8_2:13994297-13994316 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr8_2:13994634-13994653 Msa1235770:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr8_2:13994993-13995012 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr8_2:13995005-13995024 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr8_2:13995020-13995039 Msa1235770:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr8_2:13995176-13995195 Msa1235770:intron 45.0%
!! AAAATATATAAACAAAAAAA+AGG + chr8_2:13993715-13993734 None:intergenic 5.0%
!! AAAATATATAAACAAAAAAA+AGG + chr8_2:13993715-13993734 None:intergenic 5.0%
GTTTCATTTCAACGCGGCGT+CGG - chr8_2:13994615-13994634 Msa1235770:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr8_2:13994987-13995006 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr8_2:13994987-13995006 Msa1235770:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr8_2:13995023-13995042 Msa1235770:CDS 50.0%
GTTTCATTTCAACGCGGCGT+CGG - chr8_2:13994615-13994634 Msa1235770:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr8_2:13994987-13995006 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr8_2:13994987-13995006 Msa1235770:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr8_2:13995023-13995042 Msa1235770:CDS 50.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr8_2:13995026-13995045 Msa1235770:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr8_2:13995029-13995048 Msa1235770:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr8_2:13995179-13995198 Msa1235770:intron 55.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr8_2:13995026-13995045 Msa1235770:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr8_2:13995029-13995048 Msa1235770:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr8_2:13995179-13995198 Msa1235770:intron 55.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr8_2:13994628-13994647 Msa1235770:CDS 60.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr8_2:13994628-13994647 Msa1235770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 13993439 13995547 13993439 ID=Msa1235770;Name=Msa1235770
chr8_2 mRNA 13993439 13995547 13993439 ID=Msa1235770-mRNA-1;Parent=Msa1235770;Name=Msa1235770-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0.5|1|0|0|2|144|531
chr8_2 exon 13993439 13995170 13993439 ID=Msa1235770-mRNA-1:exon:5388;Parent=Msa1235770-mRNA-1
chr8_2 exon 13995540 13995547 13995540 ID=Msa1235770-mRNA-1:exon:5387;Parent=Msa1235770-mRNA-1
chr8_2 CDS 13995540 13995547 13995540 ID=Msa1235770-mRNA-1:cds;Parent=Msa1235770-mRNA-1
chr8_2 CDS 13993583 13995170 13993583 ID=Msa1235770-mRNA-1:cds;Parent=Msa1235770-mRNA-1
chr8_2 three_prime_UTR 13993439 13993582 13993439 ID=Msa1235770-mRNA-1:three_prime_utr;Parent=Msa1235770-mRNA-1
Gene Sequence

>Msa1235770

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGAAGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAACAAGAACAAGAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAGGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>Msa1235770

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTREEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVINVPPVPQQQEQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWRRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ*