AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855830 MtrunA17_Chr5g0420141 95.041 242 3 2 1 239 1 236 1.05e-170 469
Msa0855830 MtrunA17_Chr4g0061701 46.983 232 109 5 9 239 4 222 1.32e-63 197
Msa0855830 MtrunA17_Chr3g0114601 35.928 167 91 6 74 239 73 224 3.93e-21 88.2
Msa0855830 MtrunA17_Chr2g0307391 31.034 145 82 4 79 219 16 146 7.20e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855830 AT1G69080.1 42.169 249 108 6 1 239 1 223 8.40e-59 186
Msa0855830 AT1G69080.2 40.964 249 97 6 1 239 1 209 1.88e-54 174
Msa0855830 AT2G03720.2 52.273 176 75 6 66 239 64 232 2.96e-54 174
Msa0855830 AT2G03720.1 52.326 172 73 6 70 239 1 165 8.22e-53 168
Msa0855830 AT5G17390.1 47.159 176 81 5 68 239 118 285 2.01e-47 158
Msa0855830 AT3G03290.1 44.828 174 88 4 68 239 107 274 7.16e-44 149
Msa0855830 AT1G44760.1 36.207 174 89 5 66 239 62 213 4.33e-27 103
Msa0855830 AT1G44760.2 36.207 174 89 5 66 239 133 284 2.58e-26 103
Msa0855830 AT4G13450.1 27.830 212 109 7 66 239 14 219 5.62e-15 72.0
Msa0855830 AT1G48960.1 29.940 167 99 6 67 233 5 153 7.16e-14 68.9

Find 72 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCTCTTGCCCATGTTT+TGG 0.163441 5_4:+49928566 None:intergenic
AATGTTATTGATTCTGTTCT+TGG 0.169081 5_4:-49928639 Msa0855830:five_prime_UTR
TTGCCATACAATGTGCATTT+TGG 0.179754 5_4:+49927419 None:intergenic
GATCAATATAGTTAATTCTT+TGG 0.250831 5_4:-49927315 Msa0855830:three_prime_UTR
AGAAGAAAGAGTAAGAAAAT+TGG 0.268808 5_4:-49927388 Msa0855830:CDS
AAGACAAGGCGTGGCACTTT+TGG 0.275641 5_4:-49927533 Msa0855830:CDS
TGGATGGAATTTATTACATT+TGG 0.330671 5_4:+49927700 None:intergenic
TGCCCATTGCAAAGCACCTT+TGG 0.367782 5_4:+49928324 None:intergenic
TACTCACACTGTTCAGAATC+AGG 0.397968 5_4:-49928299 Msa0855830:CDS
TATCCAAAATGCACATTGTA+TGG 0.401167 5_4:-49927422 Msa0855830:CDS
TGTGATCAAAATGTTAGGTT+TGG 0.407255 5_4:+49927080 None:intergenic
TCATGCTTGGCTTGTATAGT+TGG 0.420901 5_4:+49928487 None:intergenic
TCGAGTGTGATCAAAATGTT+AGG 0.429978 5_4:+49927075 None:intergenic
AGTGTTATAAGAAATGTAAA+AGG 0.431046 5_4:-49927203 Msa0855830:three_prime_UTR
TTCACCTGACATGCATCAAC+AGG 0.444981 5_4:-49927014 Msa0855830:three_prime_UTR
ATCACTTATAGAAATCTTGA+AGG 0.463007 5_4:+49927280 None:intergenic
CTGGCAATAGAGTCACTGGT+GGG 0.465505 5_4:-49927459 Msa0855830:CDS
AGCCAAAGGTGCTTTGCAAT+GGG 0.470225 5_4:-49928326 Msa0855830:CDS
ATAGTTAATTCTTTGGATGT+TGG 0.471107 5_4:-49927308 Msa0855830:three_prime_UTR
AAGCCAAAGGTGCTTTGCAA+TGG 0.482336 5_4:-49928327 Msa0855830:CDS
AGAAAGAGTAAGAAAATTGG+AGG 0.492506 5_4:-49927385 Msa0855830:CDS
AAGAGAGGAGCAAGGTTACC+TGG 0.499404 5_4:-49928553 Msa0855830:CDS
TGATGATGAAGCTACTAGTA+AGG 0.513401 5_4:-49928125 Msa0855830:CDS
TTGTCACTTACTTACATGGA+TGG 0.516428 5_4:+49927684 None:intergenic
GTGGCCTGTTGATGCATGTC+AGG 0.521072 5_4:+49927010 None:intergenic
GTGCAAAATGTTGGTGGCAT+GGG 0.523178 5_4:+49928681 None:intergenic
AGTAACAGAAGGGAAAGAAA+AGG 0.525585 5_4:-49927581 Msa0855830:CDS
CATAATCTTCCTACTAACTA+CGG 0.528847 5_4:+49928372 None:intergenic
GTAACAGAAGGGAAAGAAAA+GGG 0.538384 5_4:-49927580 Msa0855830:CDS
GTTGATGCATGTCAGGTGAA+TGG 0.538601 5_4:+49927017 None:intergenic
TGATTATATATGTGGGCCAT+TGG 0.539236 5_4:-49927149 Msa0855830:three_prime_UTR
AGAAGTAGCCGGTCATCTCT+AGG 0.543193 5_4:-49926951 Msa0855830:three_prime_UTR
GAAATGTGTGATTATATATG+TGG 0.547120 5_4:-49927157 Msa0855830:three_prime_UTR
ATTAGTTACATTCCAAAACA+TGG 0.549088 5_4:-49928578 Msa0855830:exon
TGGGCTGGCAATAGAGTCAC+TGG 0.549351 5_4:-49927463 Msa0855830:CDS
GGCGAACGCACCCTCGCATG+TGG 0.550940 5_4:+49928508 None:intergenic
AAACCTTGTTTAGAATTCGA+AGG 0.560200 5_4:+49928247 None:intergenic
TCGAATTAGGCCACATGCGA+GGG 0.562880 5_4:-49928518 Msa0855830:CDS
TTTGACGATGGTGTGAAACA+AGG 0.566437 5_4:-49928397 Msa0855830:CDS
GAAGCAAGTTCATAAGCCCT+TGG 0.570979 5_4:+49928094 None:intergenic
TTCCAAAACATGGGCAAGAG+AGG 0.576269 5_4:-49928568 Msa0855830:exon
CGTCTTCTAATGATGTGGGC+TGG 0.577564 5_4:-49927478 Msa0855830:CDS
CATTAGAAGACGCCATGTTG+TGG 0.577627 5_4:+49927489 None:intergenic
AACAAGGGTCCGTAGTTAGT+AGG 0.583817 5_4:-49928381 Msa0855830:CDS
ATTGAGATTGCAGTAACAGA+AGG 0.585136 5_4:-49927592 Msa0855830:CDS
TGTGCAAAATGTTGGTGGCA+TGG 0.587165 5_4:+49928680 None:intergenic
CAATAGAGTCACTGGTGGGG+TGG 0.587431 5_4:-49927455 Msa0855830:CDS
CATGGCGTCTTCTAATGATG+TGG 0.588320 5_4:-49927483 Msa0855830:CDS
TGTGGGCCATTGGTTAGTTG+AGG 0.590282 5_4:-49927139 Msa0855830:three_prime_UTR
GAAAGAGTAAGAAAATTGGA+GGG 0.591657 5_4:-49927384 Msa0855830:CDS
ATCGAATTAGGCCACATGCG+AGG 0.593025 5_4:-49928519 Msa0855830:CDS
TTAGTTACATTCCAAAACAT+GGG 0.597084 5_4:-49928577 Msa0855830:exon
TAGTTTGACCTAGAGATGAC+CGG 0.598029 5_4:+49926943 None:intergenic
GAATGAAATTGTGAGTGGAA+AGG 0.602695 5_4:-49927181 Msa0855830:three_prime_UTR
TTGACGATGGTGTGAAACAA+GGG 0.607583 5_4:-49928396 Msa0855830:CDS
TTGAGATTGCAGTAACAGAA+GGG 0.610661 5_4:-49927591 Msa0855830:CDS
GAATTCATGCAGTGTTTGCG+AGG 0.613944 5_4:-49928425 Msa0855830:CDS
GCTGGCAATAGAGTCACTGG+TGG 0.614214 5_4:-49927460 Msa0855830:CDS
AAGCCTTCGAATTCTAAACA+AGG 0.615497 5_4:-49928250 Msa0855830:intron
TGGCAATAGAGTCACTGGTG+GGG 0.616318 5_4:-49927458 Msa0855830:CDS
ATTGGTTAGTTGAGGACACG+TGG 0.618946 5_4:-49927131 Msa0855830:three_prime_UTR
ATGGCGTCTTCTAATGATGT+GGG 0.632260 5_4:-49927482 Msa0855830:CDS
AAAAGGAATGAAATTGTGAG+TGG 0.633834 5_4:-49927186 Msa0855830:three_prime_UTR
GAAAAGTGTTCTTAACGATG+TGG 0.635773 5_4:+49926976 None:intergenic
CTAGTAAGGAGACAGATCCA+AGG 0.637212 5_4:-49928111 Msa0855830:CDS
TAGTAAGGAGACAGATCCAA+GGG 0.640856 5_4:-49928110 Msa0855830:CDS
ACGTGTCCTCAACTAACCAA+TGG 0.651601 5_4:+49927133 None:intergenic
CGATGTGGTGGTCAGCGATG+TGG 0.662881 5_4:+49926991 None:intergenic
AAATGTGTGATTATATATGT+GGG 0.673343 5_4:-49927156 Msa0855830:three_prime_UTR
AAGTGTTCTTAACGATGTGG+TGG 0.690703 5_4:+49926979 None:intergenic
TGCGAGGAGAAATTTGACGA+TGG 0.693381 5_4:-49928409 Msa0855830:CDS
ACATGGGCAAGAGAGGAGCA+AGG 0.696922 5_4:-49928561 Msa0855830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAATCTAAATTTTCAGA+TGG + chr5_4:49927638-49927657 None:intergenic 15.0%
!! TTTACTTAAAATTGTTTCAA+AGG + chr5_4:49927817-49927836 None:intergenic 15.0%
!! CATTATAATGTAAATAAACA+AGG - chr5_4:49927915-49927934 Msa0855830:intron 15.0%
!!! TATAAATCTAAATTTTCAGA+TGG + chr5_4:49927638-49927657 None:intergenic 15.0%
!! TTTACTTAAAATTGTTTCAA+AGG + chr5_4:49927817-49927836 None:intergenic 15.0%
!! CATTATAATGTAAATAAACA+AGG - chr5_4:49927915-49927934 Msa0855830:intron 15.0%
!! AAGGTTAAATGTTAAAATCT+CGG + chr5_4:49927798-49927817 None:intergenic 20.0%
!! ATTATCATGCAAAGAATTTA+AGG + chr5_4:49927888-49927907 None:intergenic 20.0%
!! GATCAATATAGTTAATTCTT+TGG - chr5_4:49928327-49928346 Msa0855830:CDS 20.0%
!! AGTGTTATAAGAAATGTAAA+AGG - chr5_4:49928439-49928458 Msa0855830:CDS 20.0%
!! AAATGTGTGATTATATATGT+GGG - chr5_4:49928486-49928505 Msa0855830:CDS 20.0%
!! AAGGTTAAATGTTAAAATCT+CGG + chr5_4:49927798-49927817 None:intergenic 20.0%
!! ATTATCATGCAAAGAATTTA+AGG + chr5_4:49927888-49927907 None:intergenic 20.0%
!! GATCAATATAGTTAATTCTT+TGG - chr5_4:49928327-49928346 Msa0855830:CDS 20.0%
!! AGTGTTATAAGAAATGTAAA+AGG - chr5_4:49928439-49928458 Msa0855830:CDS 20.0%
!! AAATGTGTGATTATATATGT+GGG - chr5_4:49928486-49928505 Msa0855830:CDS 20.0%
!!! AATGTTATTGATTCTGTTCT+TGG - chr5_4:49927003-49927022 Msa0855830:three_prime_UTR 25.0%
! ATTAGTTACATTCCAAAACA+TGG - chr5_4:49927064-49927083 Msa0855830:three_prime_UTR 25.0%
! TTAGTTACATTCCAAAACAT+GGG - chr5_4:49927065-49927084 Msa0855830:three_prime_UTR 25.0%
! AAAACATACAATGATATCAG+TGG + chr5_4:49927427-49927446 None:intergenic 25.0%
!! GTATGTTTTCTCTTCAAATT+TGG - chr5_4:49927438-49927457 Msa0855830:CDS 25.0%
! CAAGTATGATTCATTCAATA+TGG - chr5_4:49927487-49927506 Msa0855830:CDS 25.0%
!! TTTAACACTCTGAAAAATAG+AGG - chr5_4:49927685-49927704 Msa0855830:intron 25.0%
! TGGATGGAATTTATTACATT+TGG + chr5_4:49927945-49927964 None:intergenic 25.0%
!! TATATTGTCACTTACTTACA+TGG + chr5_4:49927965-49927984 None:intergenic 25.0%
! AAATGTTGAGACTGTATATA+TGG - chr5_4:49928012-49928031 Msa0855830:intron 25.0%
! AGAAGAAAGAGTAAGAAAAT+TGG - chr5_4:49928254-49928273 Msa0855830:CDS 25.0%
! ATAGTTAATTCTTTGGATGT+TGG - chr5_4:49928334-49928353 Msa0855830:CDS 25.0%
! ATCACTTATAGAAATCTTGA+AGG + chr5_4:49928365-49928384 None:intergenic 25.0%
! GAAATGTGTGATTATATATG+TGG - chr5_4:49928485-49928504 Msa0855830:CDS 25.0%
!!! AATGTTATTGATTCTGTTCT+TGG - chr5_4:49927003-49927022 Msa0855830:three_prime_UTR 25.0%
! ATTAGTTACATTCCAAAACA+TGG - chr5_4:49927064-49927083 Msa0855830:three_prime_UTR 25.0%
! TTAGTTACATTCCAAAACAT+GGG - chr5_4:49927065-49927084 Msa0855830:three_prime_UTR 25.0%
! AAAACATACAATGATATCAG+TGG + chr5_4:49927427-49927446 None:intergenic 25.0%
!! GTATGTTTTCTCTTCAAATT+TGG - chr5_4:49927438-49927457 Msa0855830:CDS 25.0%
! CAAGTATGATTCATTCAATA+TGG - chr5_4:49927487-49927506 Msa0855830:CDS 25.0%
!! TTTAACACTCTGAAAAATAG+AGG - chr5_4:49927685-49927704 Msa0855830:intron 25.0%
! TGGATGGAATTTATTACATT+TGG + chr5_4:49927945-49927964 None:intergenic 25.0%
!! TATATTGTCACTTACTTACA+TGG + chr5_4:49927965-49927984 None:intergenic 25.0%
! AAATGTTGAGACTGTATATA+TGG - chr5_4:49928012-49928031 Msa0855830:intron 25.0%
! AGAAGAAAGAGTAAGAAAAT+TGG - chr5_4:49928254-49928273 Msa0855830:CDS 25.0%
! ATAGTTAATTCTTTGGATGT+TGG - chr5_4:49928334-49928353 Msa0855830:CDS 25.0%
! ATCACTTATAGAAATCTTGA+AGG + chr5_4:49928365-49928384 None:intergenic 25.0%
! GAAATGTGTGATTATATATG+TGG - chr5_4:49928485-49928504 Msa0855830:CDS 25.0%
AAAAATGTGCAAAATGTTGG+TGG + chr5_4:49926970-49926989 None:intergenic 30.0%
GAGAAAAATGTGCAAAATGT+TGG + chr5_4:49926973-49926992 None:intergenic 30.0%
! GTTTTTGCTTGAATCGAATT+AGG - chr5_4:49927111-49927130 Msa0855830:three_prime_UTR 30.0%
!! ATCATCACTTTTATCATGCT+TGG + chr5_4:49927171-49927190 None:intergenic 30.0%
CATAATCTTCCTACTAACTA+CGG + chr5_4:49927273-49927292 None:intergenic 30.0%
! AAACCTTGTTTAGAATTCGA+AGG + chr5_4:49927398-49927417 None:intergenic 30.0%
TTCATTTGGTACCATTGTTT+AGG - chr5_4:49927733-49927752 Msa0855830:intron 30.0%
AATCTCAATTTGTACCTATC+AGG + chr5_4:49928039-49928058 None:intergenic 30.0%
TATCCAAAATGCACATTGTA+TGG - chr5_4:49928220-49928239 Msa0855830:intron 30.0%
AGAAAGAGTAAGAAAATTGG+AGG - chr5_4:49928257-49928276 Msa0855830:CDS 30.0%
GAAAGAGTAAGAAAATTGGA+GGG - chr5_4:49928258-49928277 Msa0855830:CDS 30.0%
! CTAAGCGTCATAAAGATTTT+TGG - chr5_4:49928294-49928313 Msa0855830:CDS 30.0%
!!! TCATAAAGATTTTTGGCTCT+TGG - chr5_4:49928301-49928320 Msa0855830:CDS 30.0%
AAAAGGAATGAAATTGTGAG+TGG - chr5_4:49928456-49928475 Msa0855830:CDS 30.0%
TGTGATCAAAATGTTAGGTT+TGG + chr5_4:49928565-49928584 None:intergenic 30.0%
AGGTCAAACTATTTAACCAT+CGG - chr5_4:49928711-49928730 Msa0855830:five_prime_UTR 30.0%
AAAAATGTGCAAAATGTTGG+TGG + chr5_4:49926970-49926989 None:intergenic 30.0%
GAGAAAAATGTGCAAAATGT+TGG + chr5_4:49926973-49926992 None:intergenic 30.0%
! GTTTTTGCTTGAATCGAATT+AGG - chr5_4:49927111-49927130 Msa0855830:three_prime_UTR 30.0%
!! ATCATCACTTTTATCATGCT+TGG + chr5_4:49927171-49927190 None:intergenic 30.0%
CATAATCTTCCTACTAACTA+CGG + chr5_4:49927273-49927292 None:intergenic 30.0%
! AAACCTTGTTTAGAATTCGA+AGG + chr5_4:49927398-49927417 None:intergenic 30.0%
TTCATTTGGTACCATTGTTT+AGG - chr5_4:49927733-49927752 Msa0855830:intron 30.0%
AATCTCAATTTGTACCTATC+AGG + chr5_4:49928039-49928058 None:intergenic 30.0%
TATCCAAAATGCACATTGTA+TGG - chr5_4:49928220-49928239 Msa0855830:intron 30.0%
AGAAAGAGTAAGAAAATTGG+AGG - chr5_4:49928257-49928276 Msa0855830:CDS 30.0%
GAAAGAGTAAGAAAATTGGA+GGG - chr5_4:49928258-49928277 Msa0855830:CDS 30.0%
! CTAAGCGTCATAAAGATTTT+TGG - chr5_4:49928294-49928313 Msa0855830:CDS 30.0%
!!! TCATAAAGATTTTTGGCTCT+TGG - chr5_4:49928301-49928320 Msa0855830:CDS 30.0%
AAAAGGAATGAAATTGTGAG+TGG - chr5_4:49928456-49928475 Msa0855830:CDS 30.0%
TGTGATCAAAATGTTAGGTT+TGG + chr5_4:49928565-49928584 None:intergenic 30.0%
ATTCGATTCAAGCAAAAACC+AGG + chr5_4:49927110-49927129 None:intergenic 35.0%
!!! GATTCTAGTTTTGAAGCCAA+AGG - chr5_4:49927302-49927321 Msa0855830:three_prime_UTR 35.0%
AAGCCTTCGAATTCTAAACA+AGG - chr5_4:49927392-49927411 Msa0855830:CDS 35.0%
! TGATGATGAAGCTACTAGTA+AGG - chr5_4:49927517-49927536 Msa0855830:CDS 35.0%
TTGTAATCTGAAAATGCCTG+AGG - chr5_4:49927586-49927605 Msa0855830:CDS 35.0%
! TCAGATGGTAGCATAGTTTT+AGG + chr5_4:49927623-49927642 None:intergenic 35.0%
CTAGTGAGTTACACTTCATT+TGG - chr5_4:49927719-49927738 Msa0855830:intron 35.0%
! TTGTCACTTACTTACATGGA+TGG + chr5_4:49927961-49927980 None:intergenic 35.0%
ACTGTATATATGGTCCTGAT+AGG - chr5_4:49928022-49928041 Msa0855830:intron 35.0%
ATTGAGATTGCAGTAACAGA+AGG - chr5_4:49928050-49928069 Msa0855830:intron 35.0%
TTGAGATTGCAGTAACAGAA+GGG - chr5_4:49928051-49928070 Msa0855830:intron 35.0%
AGTAACAGAAGGGAAAGAAA+AGG - chr5_4:49928061-49928080 Msa0855830:intron 35.0%
GTAACAGAAGGGAAAGAAAA+GGG - chr5_4:49928062-49928081 Msa0855830:intron 35.0%
AGAAAAGGGACCAAAAATAG+TGG - chr5_4:49928076-49928095 Msa0855830:intron 35.0%
! TTTGCTTCCTCCACTATTTT+TGG + chr5_4:49928089-49928108 None:intergenic 35.0%
! TTGCCATACAATGTGCATTT+TGG + chr5_4:49928226-49928245 None:intergenic 35.0%
GAATGAAATTGTGAGTGGAA+AGG - chr5_4:49928461-49928480 Msa0855830:CDS 35.0%
TGATTATATATGTGGGCCAT+TGG - chr5_4:49928493-49928512 Msa0855830:CDS 35.0%
TCGAGTGTGATCAAAATGTT+AGG + chr5_4:49928570-49928589 None:intergenic 35.0%
!! GAAAAGTGTTCTTAACGATG+TGG + chr5_4:49928669-49928688 None:intergenic 35.0%
! ACACTTTTCAAAGAAGTAGC+CGG - chr5_4:49928680-49928699 Msa0855830:five_prime_UTR 35.0%
ATTCGATTCAAGCAAAAACC+AGG + chr5_4:49927110-49927129 None:intergenic 35.0%
!!! GATTCTAGTTTTGAAGCCAA+AGG - chr5_4:49927302-49927321 Msa0855830:three_prime_UTR 35.0%
AAGCCTTCGAATTCTAAACA+AGG - chr5_4:49927392-49927411 Msa0855830:CDS 35.0%
! TGATGATGAAGCTACTAGTA+AGG - chr5_4:49927517-49927536 Msa0855830:CDS 35.0%
TTGTAATCTGAAAATGCCTG+AGG - chr5_4:49927586-49927605 Msa0855830:CDS 35.0%
! TCAGATGGTAGCATAGTTTT+AGG + chr5_4:49927623-49927642 None:intergenic 35.0%
CTAGTGAGTTACACTTCATT+TGG - chr5_4:49927719-49927738 Msa0855830:intron 35.0%
! TTGTCACTTACTTACATGGA+TGG + chr5_4:49927961-49927980 None:intergenic 35.0%
ACTGTATATATGGTCCTGAT+AGG - chr5_4:49928022-49928041 Msa0855830:intron 35.0%
ATTGAGATTGCAGTAACAGA+AGG - chr5_4:49928050-49928069 Msa0855830:intron 35.0%
TTGAGATTGCAGTAACAGAA+GGG - chr5_4:49928051-49928070 Msa0855830:intron 35.0%
AGTAACAGAAGGGAAAGAAA+AGG - chr5_4:49928061-49928080 Msa0855830:intron 35.0%
GTAACAGAAGGGAAAGAAAA+GGG - chr5_4:49928062-49928081 Msa0855830:intron 35.0%
AGAAAAGGGACCAAAAATAG+TGG - chr5_4:49928076-49928095 Msa0855830:intron 35.0%
! TTTGCTTCCTCCACTATTTT+TGG + chr5_4:49928089-49928108 None:intergenic 35.0%
! TTGCCATACAATGTGCATTT+TGG + chr5_4:49928226-49928245 None:intergenic 35.0%
GAATGAAATTGTGAGTGGAA+AGG - chr5_4:49928461-49928480 Msa0855830:CDS 35.0%
TGATTATATATGTGGGCCAT+TGG - chr5_4:49928493-49928512 Msa0855830:CDS 35.0%
TCGAGTGTGATCAAAATGTT+AGG + chr5_4:49928570-49928589 None:intergenic 35.0%
!! GAAAAGTGTTCTTAACGATG+TGG + chr5_4:49928669-49928688 None:intergenic 35.0%
! ACACTTTTCAAAGAAGTAGC+CGG - chr5_4:49928680-49928699 Msa0855830:five_prime_UTR 35.0%
!! TCATGCTTGGCTTGTATAGT+TGG + chr5_4:49927158-49927177 None:intergenic 40.0%
TTTGACGATGGTGTGAAACA+AGG - chr5_4:49927245-49927264 Msa0855830:three_prime_UTR 40.0%
TTGACGATGGTGTGAAACAA+GGG - chr5_4:49927246-49927265 Msa0855830:three_prime_UTR 40.0%
TACTCACACTGTTCAGAATC+AGG - chr5_4:49927343-49927362 Msa0855830:CDS 40.0%
TAGTAAGGAGACAGATCCAA+GGG - chr5_4:49927532-49927551 Msa0855830:CDS 40.0%
TCGCGATACAACCTAAACAA+TGG + chr5_4:49927747-49927766 None:intergenic 40.0%
AAAGGGACCAAAAATAGTGG+AGG - chr5_4:49928079-49928098 Msa0855830:CDS 40.0%
AGAAAAAGAGGTCCACAACA+TGG - chr5_4:49928141-49928160 Msa0855830:intron 40.0%
ATGGCGTCTTCTAATGATGT+GGG - chr5_4:49928160-49928179 Msa0855830:intron 40.0%
AAGTGTTCTTAACGATGTGG+TGG + chr5_4:49928666-49928685 None:intergenic 40.0%
TAGTTTGACCTAGAGATGAC+CGG + chr5_4:49928702-49928721 None:intergenic 40.0%
!! TCATGCTTGGCTTGTATAGT+TGG + chr5_4:49927158-49927177 None:intergenic 40.0%
TTTGACGATGGTGTGAAACA+AGG - chr5_4:49927245-49927264 Msa0855830:three_prime_UTR 40.0%
TTGACGATGGTGTGAAACAA+GGG - chr5_4:49927246-49927265 Msa0855830:three_prime_UTR 40.0%
TACTCACACTGTTCAGAATC+AGG - chr5_4:49927343-49927362 Msa0855830:CDS 40.0%
TAGTAAGGAGACAGATCCAA+GGG - chr5_4:49927532-49927551 Msa0855830:CDS 40.0%
TCGCGATACAACCTAAACAA+TGG + chr5_4:49927747-49927766 None:intergenic 40.0%
AAAGGGACCAAAAATAGTGG+AGG - chr5_4:49928079-49928098 Msa0855830:CDS 40.0%
AGAAAAAGAGGTCCACAACA+TGG - chr5_4:49928141-49928160 Msa0855830:intron 40.0%
ATGGCGTCTTCTAATGATGT+GGG - chr5_4:49928160-49928179 Msa0855830:intron 40.0%
AAGTGTTCTTAACGATGTGG+TGG + chr5_4:49928666-49928685 None:intergenic 40.0%
TAGTTTGACCTAGAGATGAC+CGG + chr5_4:49928702-49928721 None:intergenic 40.0%
!! GTGCAAAATGTTGGTGGCAT+GGG + chr5_4:49926964-49926983 None:intergenic 45.0%
!! TGTGCAAAATGTTGGTGGCA+TGG + chr5_4:49926965-49926984 None:intergenic 45.0%
TTCCAAAACATGGGCAAGAG+AGG - chr5_4:49927074-49927093 Msa0855830:three_prime_UTR 45.0%
GAATTCATGCAGTGTTTGCG+AGG - chr5_4:49927217-49927236 Msa0855830:three_prime_UTR 45.0%
TGCGAGGAGAAATTTGACGA+TGG - chr5_4:49927233-49927252 Msa0855830:three_prime_UTR 45.0%
AACAAGGGTCCGTAGTTAGT+AGG - chr5_4:49927261-49927280 Msa0855830:three_prime_UTR 45.0%
!! AAGCCAAAGGTGCTTTGCAA+TGG - chr5_4:49927315-49927334 Msa0855830:three_prime_UTR 45.0%
!! AGCCAAAGGTGCTTTGCAAT+GGG - chr5_4:49927316-49927335 Msa0855830:three_prime_UTR 45.0%
CTAGTAAGGAGACAGATCCA+AGG - chr5_4:49927531-49927550 Msa0855830:CDS 45.0%
GAAGCAAGTTCATAAGCCCT+TGG + chr5_4:49927551-49927570 None:intergenic 45.0%
TTAGGAGCTAAACTCACCTC+AGG + chr5_4:49927605-49927624 None:intergenic 45.0%
GTGGAGGAAGCAAAAAGACA+AGG - chr5_4:49928095-49928114 Msa0855830:CDS 45.0%
!!! TGGTTTTGGGGCAGAAAAAG+AGG - chr5_4:49928129-49928148 Msa0855830:CDS 45.0%
CATTAGAAGACGCCATGTTG+TGG + chr5_4:49928156-49928175 None:intergenic 45.0%
CATGGCGTCTTCTAATGATG+TGG - chr5_4:49928159-49928178 Msa0855830:intron 45.0%
ACGTGTCCTCAACTAACCAA+TGG + chr5_4:49928512-49928531 None:intergenic 45.0%
! ATTGGTTAGTTGAGGACACG+TGG - chr5_4:49928511-49928530 Msa0855830:CDS 45.0%
GTTGATGCATGTCAGGTGAA+TGG + chr5_4:49928628-49928647 None:intergenic 45.0%
TTCACCTGACATGCATCAAC+AGG - chr5_4:49928628-49928647 Msa0855830:five_prime_UTR 45.0%
!! GTGCAAAATGTTGGTGGCAT+GGG + chr5_4:49926964-49926983 None:intergenic 45.0%
!! TGTGCAAAATGTTGGTGGCA+TGG + chr5_4:49926965-49926984 None:intergenic 45.0%
TTCCAAAACATGGGCAAGAG+AGG - chr5_4:49927074-49927093 Msa0855830:three_prime_UTR 45.0%
GAATTCATGCAGTGTTTGCG+AGG - chr5_4:49927217-49927236 Msa0855830:three_prime_UTR 45.0%
TGCGAGGAGAAATTTGACGA+TGG - chr5_4:49927233-49927252 Msa0855830:three_prime_UTR 45.0%
AACAAGGGTCCGTAGTTAGT+AGG - chr5_4:49927261-49927280 Msa0855830:three_prime_UTR 45.0%
!! AAGCCAAAGGTGCTTTGCAA+TGG - chr5_4:49927315-49927334 Msa0855830:three_prime_UTR 45.0%
!! AGCCAAAGGTGCTTTGCAAT+GGG - chr5_4:49927316-49927335 Msa0855830:three_prime_UTR 45.0%
CTAGTAAGGAGACAGATCCA+AGG - chr5_4:49927531-49927550 Msa0855830:CDS 45.0%
GAAGCAAGTTCATAAGCCCT+TGG + chr5_4:49927551-49927570 None:intergenic 45.0%
TTAGGAGCTAAACTCACCTC+AGG + chr5_4:49927605-49927624 None:intergenic 45.0%
GTGGAGGAAGCAAAAAGACA+AGG - chr5_4:49928095-49928114 Msa0855830:CDS 45.0%
!!! TGGTTTTGGGGCAGAAAAAG+AGG - chr5_4:49928129-49928148 Msa0855830:CDS 45.0%
CATTAGAAGACGCCATGTTG+TGG + chr5_4:49928156-49928175 None:intergenic 45.0%
CATGGCGTCTTCTAATGATG+TGG - chr5_4:49928159-49928178 Msa0855830:intron 45.0%
ACGTGTCCTCAACTAACCAA+TGG + chr5_4:49928512-49928531 None:intergenic 45.0%
! ATTGGTTAGTTGAGGACACG+TGG - chr5_4:49928511-49928530 Msa0855830:CDS 45.0%
GTTGATGCATGTCAGGTGAA+TGG + chr5_4:49928628-49928647 None:intergenic 45.0%
TTCACCTGACATGCATCAAC+AGG - chr5_4:49928628-49928647 Msa0855830:five_prime_UTR 45.0%
! CTCCTCTCTTGCCCATGTTT+TGG + chr5_4:49927079-49927098 None:intergenic 50.0%
AAGAGAGGAGCAAGGTTACC+TGG - chr5_4:49927089-49927108 Msa0855830:three_prime_UTR 50.0%
ATCGAATTAGGCCACATGCG+AGG - chr5_4:49927123-49927142 Msa0855830:three_prime_UTR 50.0%
TCGAATTAGGCCACATGCGA+GGG - chr5_4:49927124-49927143 Msa0855830:three_prime_UTR 50.0%
! TGCCCATTGCAAAGCACCTT+TGG + chr5_4:49927321-49927340 None:intergenic 50.0%
GGAAGCAAAAAGACAAGGCG+TGG - chr5_4:49928100-49928119 Msa0855830:CDS 50.0%
! AAGACAAGGCGTGGCACTTT+TGG - chr5_4:49928109-49928128 Msa0855830:CDS 50.0%
!!! AGGCGTGGCACTTTTGGTTT+TGG - chr5_4:49928115-49928134 Msa0855830:CDS 50.0%
!!! GGCGTGGCACTTTTGGTTTT+GGG - chr5_4:49928116-49928135 Msa0855830:CDS 50.0%
!!! GCGTGGCACTTTTGGTTTTG+GGG - chr5_4:49928117-49928136 Msa0855830:CDS 50.0%
CGTCTTCTAATGATGTGGGC+TGG - chr5_4:49928164-49928183 Msa0855830:intron 50.0%
CTGGCAATAGAGTCACTGGT+GGG - chr5_4:49928183-49928202 Msa0855830:intron 50.0%
TGGCAATAGAGTCACTGGTG+GGG - chr5_4:49928184-49928203 Msa0855830:intron 50.0%
! TGTGGGCCATTGGTTAGTTG+AGG - chr5_4:49928503-49928522 Msa0855830:CDS 50.0%
AGAAGTAGCCGGTCATCTCT+AGG - chr5_4:49928691-49928710 Msa0855830:five_prime_UTR 50.0%
! CTCCTCTCTTGCCCATGTTT+TGG + chr5_4:49927079-49927098 None:intergenic 50.0%
AAGAGAGGAGCAAGGTTACC+TGG - chr5_4:49927089-49927108 Msa0855830:three_prime_UTR 50.0%
ATCGAATTAGGCCACATGCG+AGG - chr5_4:49927123-49927142 Msa0855830:three_prime_UTR 50.0%
TCGAATTAGGCCACATGCGA+GGG - chr5_4:49927124-49927143 Msa0855830:three_prime_UTR 50.0%
! TGCCCATTGCAAAGCACCTT+TGG + chr5_4:49927321-49927340 None:intergenic 50.0%
GGAAGCAAAAAGACAAGGCG+TGG - chr5_4:49928100-49928119 Msa0855830:CDS 50.0%
! AAGACAAGGCGTGGCACTTT+TGG - chr5_4:49928109-49928128 Msa0855830:CDS 50.0%
!!! AGGCGTGGCACTTTTGGTTT+TGG - chr5_4:49928115-49928134 Msa0855830:CDS 50.0%
!!! GGCGTGGCACTTTTGGTTTT+GGG - chr5_4:49928116-49928135 Msa0855830:CDS 50.0%
!!! GCGTGGCACTTTTGGTTTTG+GGG - chr5_4:49928117-49928136 Msa0855830:CDS 50.0%
CGTCTTCTAATGATGTGGGC+TGG - chr5_4:49928164-49928183 Msa0855830:intron 50.0%
CTGGCAATAGAGTCACTGGT+GGG - chr5_4:49928183-49928202 Msa0855830:intron 50.0%
TGGCAATAGAGTCACTGGTG+GGG - chr5_4:49928184-49928203 Msa0855830:intron 50.0%
! TGTGGGCCATTGGTTAGTTG+AGG - chr5_4:49928503-49928522 Msa0855830:CDS 50.0%
AGAAGTAGCCGGTCATCTCT+AGG - chr5_4:49928691-49928710 Msa0855830:five_prime_UTR 50.0%
ACATGGGCAAGAGAGGAGCA+AGG - chr5_4:49927081-49927100 Msa0855830:three_prime_UTR 55.0%
!! TGGGCTGGCAATAGAGTCAC+TGG - chr5_4:49928179-49928198 Msa0855830:intron 55.0%
GCTGGCAATAGAGTCACTGG+TGG - chr5_4:49928182-49928201 Msa0855830:intron 55.0%
CAATAGAGTCACTGGTGGGG+TGG - chr5_4:49928187-49928206 Msa0855830:intron 55.0%
GTGGCCTGTTGATGCATGTC+AGG + chr5_4:49928635-49928654 None:intergenic 55.0%
ACATGGGCAAGAGAGGAGCA+AGG - chr5_4:49927081-49927100 Msa0855830:three_prime_UTR 55.0%
!! TGGGCTGGCAATAGAGTCAC+TGG - chr5_4:49928179-49928198 Msa0855830:intron 55.0%
GCTGGCAATAGAGTCACTGG+TGG - chr5_4:49928182-49928201 Msa0855830:intron 55.0%
CAATAGAGTCACTGGTGGGG+TGG - chr5_4:49928187-49928206 Msa0855830:intron 55.0%
GTGGCCTGTTGATGCATGTC+AGG + chr5_4:49928635-49928654 None:intergenic 55.0%
CGATGTGGTGGTCAGCGATG+TGG + chr5_4:49928654-49928673 None:intergenic 60.0%
CGATGTGGTGGTCAGCGATG+TGG + chr5_4:49928654-49928673 None:intergenic 60.0%
GGCGAACGCACCCTCGCATG+TGG + chr5_4:49927137-49927156 None:intergenic 70.0%
GGCGAACGCACCCTCGCATG+TGG + chr5_4:49927137-49927156 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 49926932 49928732 49926932 ID=Msa0855830;Name=Msa0855830
chr5_4 mRNA 49926932 49928732 49926932 ID=Msa0855830-mRNA-1;Parent=Msa0855830;Name=Msa0855830-mRNA-1;_AED=0.15;_eAED=0.15;_QI=151|0.33|0.5|1|0.33|0.75|4|404|239
chr5_4 exon 49926932 49927620 49926932 ID=Msa0855830-mRNA-1:exon:15623;Parent=Msa0855830-mRNA-1
chr5_4 exon 49927699 49927727 49927699 ID=Msa0855830-mRNA-1:exon:15622;Parent=Msa0855830-mRNA-1
chr5_4 exon 49928077 49928151 49928077 ID=Msa0855830-mRNA-1:exon:15621;Parent=Msa0855830-mRNA-1
chr5_4 exon 49928251 49928732 49928251 ID=Msa0855830-mRNA-1:exon:15620;Parent=Msa0855830-mRNA-1
chr5_4 five_prime_UTR 49928582 49928732 49928582 ID=Msa0855830-mRNA-1:five_prime_utr;Parent=Msa0855830-mRNA-1
chr5_4 CDS 49928251 49928581 49928251 ID=Msa0855830-mRNA-1:cds;Parent=Msa0855830-mRNA-1
chr5_4 CDS 49928077 49928151 49928077 ID=Msa0855830-mRNA-1:cds;Parent=Msa0855830-mRNA-1
chr5_4 CDS 49927699 49927727 49927699 ID=Msa0855830-mRNA-1:cds;Parent=Msa0855830-mRNA-1
chr5_4 CDS 49927336 49927620 49927336 ID=Msa0855830-mRNA-1:cds;Parent=Msa0855830-mRNA-1
chr5_4 three_prime_UTR 49926932 49927335 49926932 ID=Msa0855830-mRNA-1:three_prime_utr;Parent=Msa0855830-mRNA-1
Gene Sequence

>Msa0855830

ATGGGCAAGAGAGGAGCAAGGTTACCTGGTTTTTGCTTGAATCGAATTAGGCCACATGCGAGGGTGCGTTCGCCAACTATACAAGCCAAGCATGATAAAAGTGATGATGCTAAAATTGATCAGAAAATTACTGAGAATTCATGCAGTGTTTGCGAGGAGAAATTTGACGATGGTGTGAAACAAGGGTCCGTAGTTAGTAGGAAGATTATGATTGTGATTGATTCTAGTTTTGAAGCCAAAGGTGCTTTGCAATGGGCACTTACTCACACTGTTCAGAATCAGGATACTATAGTTCTTCTTCATGTCATGAAGCCTTCGAATTCTAAACAAGAAACTGATGATGAAGCTACTAGTAAGGAGACAGATCCAAGGGCTTATGAACTTGCTTCATCTTTCAAGAATATTTGCATGCCAAATGTAATAAATTCCATCCATGTACAAATTGAGATTGCAGTAACAGAAGGGAAAGAAAAGGGACCAAAAATAGTGGAGGAAGCAAAAAGACAAGGCGTGGCACTTTTGGTTTTGGGGCAGAAAAAGAGGTCCACAACATGGCGTCTTCTAATGATGTGGGCTGGCAATAGAGTCACTGGTGGGGTGGTAGAGTATTGTATCCAAAATGCACATTGTATGGCAATTGCTGTGAGAAGAAAGAGTAAGAAAATTGGAGGGTATATGATTACTACTAAGCGTCATAAAGATTTTTGGCTCTTGGCTTGA

Protein sequence

>Msa0855830

MGKRGARLPGFCLNRIRPHARVRSPTIQAKHDKSDDAKIDQKITENSCSVCEEKFDDGVKQGSVVSRKIMIVIDSSFEAKGALQWALTHTVQNQDTIVLLHVMKPSNSKQETDDEATSKETDPRAYELASSFKNICMPNVINSIHVQIEIAVTEGKEKGPKIVEEAKRQGVALLVLGQKKRSTTWRLLMMWAGNRVTGGVVEYCIQNAHCMAIAVRRKSKKIGGYMITTKRHKDFWLLA*