AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0862320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862320 MtrunA17_Chr5g0443701 99.497 398 1 1 9 405 1 398 0.0 815
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862320 AT1G55460.1 69.712 416 102 4 9 405 1 411 0.0 590
Msa0862320 AT5G51795.1 52.500 400 116 7 10 405 18 347 2.63e-129 376

Find 118 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGAGTTTGTCAAGTATT+TGG 0.145282 5_4:+61946874 Msa0862320:CDS
CTACTTGATGTGTCCTTAAA+TGG 0.183072 5_4:+61948020 Msa0862320:three_prime_UTR
TTTCCTCTTCAGATTGTTCT+TGG 0.203555 5_4:-61947269 None:intergenic
TTATGATTCTGTTAAGTTTC+AGG 0.211064 5_4:+61947813 Msa0862320:three_prime_UTR
TCACAATCACCGTCCATTTA+AGG 0.250232 5_4:-61948033 None:intergenic
AGCTTTATTCTAAAATTTAC+TGG 0.257732 5_4:+61948082 Msa0862320:three_prime_UTR
AAAACAACAGGAAGGATTAT+TGG 0.276799 5_4:+61947356 Msa0862320:CDS
TTGATTTATGTGATTATAGT+TGG 0.313233 5_4:+61947966 Msa0862320:three_prime_UTR
TTCTACATTTAGTTCCTTTG+TGG 0.324733 5_4:-61947125 None:intergenic
TCTCATCACGACACTGCTTC+TGG 0.346818 5_4:-61946622 None:intergenic
ACCGAGTTTGTCAAGTATTT+GGG 0.356335 5_4:+61946875 Msa0862320:CDS
TTCCTCTTCAGATTGTTCTT+GGG 0.362086 5_4:-61947268 None:intergenic
TAAGAGAATCAAGGCAGATT+TGG 0.365371 5_4:+61946997 Msa0862320:CDS
TGATGCATCACCTGTTTCCT+TGG 0.369482 5_4:-61947197 None:intergenic
TGGATCACTTGCTAGGCTGC+TGG 0.373691 5_4:+61947594 Msa0862320:CDS
GGATCACTTGCTAGGCTGCT+GGG 0.394089 5_4:+61947595 Msa0862320:CDS
TGATTTATGTGATTATAGTT+GGG 0.402238 5_4:+61947967 Msa0862320:three_prime_UTR
TTCTGTTAAGTTTCAGGAGT+TGG 0.409423 5_4:+61947819 Msa0862320:three_prime_UTR
CAGCTTTGGAAGAAATGATC+AGG 0.409479 5_4:+61947311 Msa0862320:CDS
ATTCGATTGGCAATTGCCTT+AGG 0.412636 5_4:-61946554 None:intergenic
GTCAAGTATTTGGGTCGAAC+TGG 0.414894 5_4:+61946884 Msa0862320:CDS
AGCCCTCTATTATGCGGGTT+GGG 0.416024 5_4:-61946709 None:intergenic
GTAGAAGATGGAACTAAGAT+AGG 0.418114 5_4:+61947142 Msa0862320:CDS
GCATGAGGGAATTGTTGTTA+AGG 0.426449 5_4:+61947381 Msa0862320:CDS
AAACTGTGATACCACAGGTT+GGG 0.432957 5_4:+61947539 Msa0862320:CDS
AAAGTGATTGACAAGTATGT+AGG 0.434461 5_4:+61947460 Msa0862320:CDS
TTTAAGCACCCTACCATCAT+AGG 0.436419 5_4:-61947665 None:intergenic
GCCAATCGAATTAAAGCAAA+AGG 0.442753 5_4:+61946566 Msa0862320:CDS
GCATGTGCTTAGAGTTGATC+AGG 0.446284 5_4:+61947507 Msa0862320:CDS
TCACCTGTTTCCTTGGTCAC+AGG 0.446502 5_4:-61947190 None:intergenic
AAACCTGTGACCAAGGAAAC+AGG 0.453479 5_4:+61947187 Msa0862320:CDS
CAAAAGGACTGCAGAAGCTT+CGG 0.454838 5_4:+61946582 Msa0862320:CDS
AAGTGATTGACAAGTATGTA+GGG 0.460918 5_4:+61947461 Msa0862320:CDS
AAGTAGCCTAGTGAGTTTGA+TGG 0.468896 5_4:+61947713 Msa0862320:exon
AAGTAGCCTAGTGAGTTTGA+TGG 0.468896 5_4:+61947779 Msa0862320:three_prime_UTR
GGGTCGAACTGGAAAGTGTA+AGG 0.469244 5_4:+61946895 Msa0862320:CDS
AAATGATCAGGGAGGAAGAG+AGG 0.471242 5_4:+61947323 Msa0862320:CDS
TAGCCCTCTATTATGCGGGT+TGG 0.476411 5_4:-61946710 None:intergenic
AGCAAAGTCTTGGCTGAGAA+GGG 0.481164 5_4:+61947409 Msa0862320:CDS
AAAAGTTGTCTCAAACTCTT+CGG 0.492025 5_4:-61946735 None:intergenic
TAAGGTTATGAGCAAAGTCT+TGG 0.495364 5_4:+61947399 Msa0862320:CDS
GGGCAAGGAAAGTGCAGAAA+AGG 0.500570 5_4:+61947987 Msa0862320:three_prime_UTR
CTGTGAAGGCTGATCAGACT+CGG 0.500574 5_4:-61947095 None:intergenic
GAAGGGGTACTACAAGCAAA+AGG 0.501155 5_4:+61947426 Msa0862320:CDS
AAACCCAACCCGCATAATAG+AGG 0.501550 5_4:+61946706 Msa0862320:CDS
AACTGTGATACCACAGGTTG+GGG 0.504284 5_4:+61947540 Msa0862320:CDS
ATCACTTGCTAGGCTGCTGG+GGG 0.509623 5_4:+61947597 Msa0862320:CDS
TGGTGGTGGAAAATCAGCTT+TGG 0.513953 5_4:+61947297 Msa0862320:CDS
AAGGAACTAAATGTAGAAGA+TGG 0.517017 5_4:+61947130 Msa0862320:CDS
GTATGTAATGAACCATCCCT+TGG 0.519009 5_4:-61946930 None:intergenic
AGATTCAGAAACAGATTGAA+AGG 0.519987 5_4:+61947044 Msa0862320:CDS
CAGCCACACGGCTGAATCGA+TGG 0.522163 5_4:-61946778 None:intergenic
TTTGTGGTCTGTACCTGTGA+AGG 0.523916 5_4:-61947109 None:intergenic
AAGAGGAAAGAAAGTGGTGG+TGG 0.524796 5_4:+61947283 Msa0862320:CDS
AGTTCATCCAGATTGCCAAT+GGG 0.527338 5_4:+61946512 Msa0862320:intron
ATCAGCTAAACCTGTGACCA+AGG 0.528222 5_4:+61947180 Msa0862320:CDS
GGTATAGCCCTCTATTATGC+GGG 0.528294 5_4:-61946714 None:intergenic
GATGAAGAATAAGAGAATCA+AGG 0.529532 5_4:+61946988 Msa0862320:CDS
ACAAATGTCTTCATATTCCA+CGG 0.532224 5_4:-61947689 None:intergenic
ACAAATGTCTTCATATTCCA+CGG 0.532224 5_4:-61947755 None:intergenic
GATCACTTGCTAGGCTGCTG+GGG 0.533089 5_4:+61947596 Msa0862320:CDS
CATATCGTGGATCACTTGCT+AGG 0.538560 5_4:+61947587 Msa0862320:CDS
CGGTATAGCCCTCTATTATG+CGG 0.542283 5_4:-61946715 None:intergenic
CGAGTCTGATCAGCCTTCAC+AGG 0.543285 5_4:+61947096 Msa0862320:CDS
ATAGAGAAAGGTGCCTATGA+TGG 0.547381 5_4:+61947652 Msa0862320:CDS
AGAAAGGTGCCTATGATGGT+AGG 0.549060 5_4:+61947656 Msa0862320:CDS
GAAGGATTATTGGTTGCATG+AGG 0.552788 5_4:+61947366 Msa0862320:CDS
AGATGAAGAAAAGCAAGAGA+AGG 0.554060 5_4:+61947021 Msa0862320:CDS
TATGTGATTATAGTTGGGCA+AGG 0.554215 5_4:+61947972 Msa0862320:three_prime_UTR
GAAAGGTGCCTATGATGGTA+GGG 0.555344 5_4:+61947657 Msa0862320:CDS
CAGTTCATCCAGATTGCCAA+TGG 0.555547 5_4:+61946511 Msa0862320:intron
AAATGCCACTGCATGAGTGA+AGG 0.558311 5_4:+61946653 Msa0862320:CDS
TATGTAATGAACCATCCCTT+GGG 0.561780 5_4:-61946929 None:intergenic
CTGTGGAGTTCATATGAACA+TGG 0.562378 5_4:-61946838 None:intergenic
ATGAAGAGAAATCTGAGGAA+AGG 0.562799 5_4:+61947242 Msa0862320:CDS
AATGCCACTGCATGAGTGAA+GGG 0.566370 5_4:+61946654 Msa0862320:CDS
GAGCAAAGTCTTGGCTGAGA+AGG 0.567059 5_4:+61947408 Msa0862320:CDS
TTGAAGAAACGCCCAAGGGA+TGG 0.570858 5_4:+61946918 Msa0862320:CDS
AAGCAGTGTCGTGATGAGAA+TGG 0.571787 5_4:+61946626 Msa0862320:CDS
AGGAAACAGGTGATGCATCA+AGG 0.577396 5_4:+61947200 Msa0862320:CDS
GCTAAGGTGCAGATAGAGAA+AGG 0.581012 5_4:+61947640 Msa0862320:CDS
AAACGACTTTCTCACACCTA+AGG 0.585334 5_4:+61946538 Msa0862320:CDS
GATTCAGAAACAGATTGAAA+GGG 0.585483 5_4:+61947045 Msa0862320:CDS
GAAACTGTGATACCACAGGT+TGG 0.587831 5_4:+61947538 Msa0862320:CDS
GGTGCCCTTCACTCATGCAG+TGG 0.591698 5_4:-61946658 None:intergenic
ATCCCAAGAACAATCTGAAG+AGG 0.596749 5_4:+61947266 Msa0862320:CDS
AACCCAACCCGCATAATAGA+GGG 0.598618 5_4:+61946707 Msa0862320:CDS
TGATGAGGTGCTTAAAGCCG+TGG 0.604749 5_4:+61947738 Msa0862320:three_prime_UTR
AAGGGGTACTACAAGCAAAA+GGG 0.608494 5_4:+61947427 Msa0862320:CDS
ATAGTCAATGGGGCATATCG+TGG 0.609608 5_4:+61947574 Msa0862320:CDS
AAGGATTATTGGTTGCATGA+GGG 0.619867 5_4:+61947367 Msa0862320:CDS
GCTTGAAACTGTGATACCAC+AGG 0.619884 5_4:+61947534 Msa0862320:CDS
TGGTAGGGTGCTTAAAGCCG+TGG 0.620762 5_4:+61947672 Msa0862320:CDS
GTTCATCCAGATTGCCAATG+GGG 0.622001 5_4:+61946513 Msa0862320:intron
AAGGACTGCAGAAGCTTCGG+TGG 0.623632 5_4:+61946585 Msa0862320:CDS
CAGCCATCGATTCAGCCGTG+TGG 0.624533 5_4:+61946775 Msa0862320:CDS
TGTGAAGGCTGATCAGACTC+GGG 0.626706 5_4:-61947094 None:intergenic
TAAGGTTGAAGAAACGCCCA+AGG 0.626739 5_4:+61946913 Msa0862320:CDS
GGTTGATGAAGAGAAATCTG+AGG 0.630553 5_4:+61947237 Msa0862320:CDS
ATCATTCCATCAAACTCACT+AGG 0.639398 5_4:-61947719 None:intergenic
AGCTTTGGAAGAAATGATCA+GGG 0.643174 5_4:+61947312 Msa0862320:CDS
ACCCAAATACTTGACAAACT+CGG 0.643990 5_4:-61946876 None:intergenic
TTCATATGAACTCCACAGAG+TGG 0.644225 5_4:+61946843 Msa0862320:CDS
AATCTGAAGAGGAAAGAAAG+TGG 0.646152 5_4:+61947277 Msa0862320:CDS
AAACTACAGTCGCAGCCACA+CGG 0.648120 5_4:-61946790 None:intergenic
TCATATGAACTCCACAGAGT+GGG 0.648903 5_4:+61946844 Msa0862320:CDS
AGTGATTGACAAGTATGTAG+GGG 0.650139 5_4:+61947462 Msa0862320:CDS
ATCATTCCATCAAACTCACT+AGG 0.651817 5_4:-61947785 None:intergenic
GCAAAGTCTTGGCTGAGAAG+GGG 0.659381 5_4:+61947410 Msa0862320:CDS
TTGATGTGTCCTTAAATGGA+CGG 0.661946 5_4:+61948024 Msa0862320:three_prime_UTR
GGTGAGTGTAGCCCACTCTG+TGG 0.683268 5_4:-61946855 None:intergenic
CTGAAGAGGAAAGAAAGTGG+TGG 0.702744 5_4:+61947280 Msa0862320:CDS
ATCAAGGATAGTGTTTGATG+AGG 0.710473 5_4:+61947216 Msa0862320:CDS
AAGGTTGAAGAAACGCCCAA+GGG 0.739475 5_4:+61946914 Msa0862320:CDS
GTGAGTTTGATGGAATGATG+AGG 0.750316 5_4:+61947723 Msa0862320:exon
TTTGGAAGAAATGATCAGGG+AGG 0.753882 5_4:+61947315 Msa0862320:CDS
TTCACAGGTACAGACCACAA+AGG 0.767217 5_4:+61947111 Msa0862320:CDS
ACTGTGATACCACAGGTTGG+GGG 0.767960 5_4:+61947541 Msa0862320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTTTTTTTTAAATCA+CGG - chr5_4:61943120-61943139 None:intergenic 10.0%
!!! ATGATAAAAGTAATTTTTTT+AGG - chr5_4:61943289-61943308 None:intergenic 10.0%
!!! AATCTTTTATTTGAAATTAT+TGG + chr5_4:61943720-61943739 Msa0862320:intron 10.0%
!! AATAATTTGAAAAAATAACA+TGG - chr5_4:61943913-61943932 None:intergenic 10.0%
!!! TTTAGTAGTTTTTTTTTTTT+TGG + chr5_4:61944946-61944965 Msa0862320:intron 10.0%
!! TTAAAATTCAAAATACAATA+CGG - chr5_4:61946121-61946140 None:intergenic 10.0%
!! TTAATCATAACATTATACAT+TGG - chr5_4:61941905-61941924 None:intergenic 15.0%
!!! TCTATTTTTTTTTAAATCAC+GGG - chr5_4:61943119-61943138 None:intergenic 15.0%
!!! ACTTTTTCATGTTTTTTTTA+AGG + chr5_4:61943235-61943254 Msa0862320:intron 15.0%
!!! CTGGTTTTTTTTTTTTTTTT+TGG + chr5_4:61944086-61944105 Msa0862320:intron 15.0%
!!! TTTTTTTTTTTTTGGTTTAG+AGG + chr5_4:61944094-61944113 Msa0862320:intron 15.0%
!! AATAATAAAAAATCAAAGAG+AGG + chr5_4:61945513-61945532 Msa0862320:intron 15.0%
!! AAAAAAAAATAGACAAAGTA+TGG - chr5_4:61945675-61945694 None:intergenic 15.0%
!! AATAAACAAAATTAATCTGA+GGG - chr5_4:61945896-61945915 None:intergenic 15.0%
!! TAATAAACAAAATTAATCTG+AGG - chr5_4:61945897-61945916 None:intergenic 15.0%
!! CAATATCATCAAAAAAAATA+CGG - chr5_4:61946403-61946422 None:intergenic 15.0%
!!! ACTTGTTTTCCTAAAAAAAT+CGG + chr5_4:61941849-61941868 Msa0862320:intron 20.0%
!! CCATATTAAAAAAATCCAAA+CGG - chr5_4:61942225-61942244 None:intergenic 20.0%
!! CATTATAATTTCTTGATTCA+AGG - chr5_4:61943693-61943712 None:intergenic 20.0%
!! AAATTATTGGATTGTTTAAC+TGG + chr5_4:61943733-61943752 Msa0862320:intron 20.0%
!! AATTATTGGATTGTTTAACT+GGG + chr5_4:61943734-61943753 Msa0862320:intron 20.0%
!! TTTCAAATTATTATTGGTGT+CGG + chr5_4:61943921-61943940 Msa0862320:intron 20.0%
!! TAATTGAGTAAAACCTATTT+GGG - chr5_4:61944484-61944503 None:intergenic 20.0%
!!! ATTTCATAGACAAAAGTATT+TGG + chr5_4:61944715-61944734 Msa0862320:intron 20.0%
!! AAATAGAAGTTTCATCTAAA+TGG + chr5_4:61945146-61945165 Msa0862320:intron 20.0%
!! TATACTATATTCACAAATGA+AGG - chr5_4:61945197-61945216 None:intergenic 20.0%
!! AATACAAATACGATACAATA+CGG - chr5_4:61946157-61946176 None:intergenic 20.0%
!! TGTTATGAATTTATGATTGT+TGG + chr5_4:61946207-61946226 Msa0862320:intron 20.0%
!!! ACAATTATCTTTTCTTCTAT+GGG + chr5_4:61947914-61947933 Msa0862320:three_prime_UTR 20.0%
!! TTGATTTATGTGATTATAGT+TGG + chr5_4:61947966-61947985 Msa0862320:three_prime_UTR 20.0%
!! TGATTTATGTGATTATAGTT+GGG + chr5_4:61947967-61947986 Msa0862320:three_prime_UTR 20.0%
!!! AGCTTTATTCTAAAATTTAC+TGG + chr5_4:61948082-61948101 Msa0862320:three_prime_UTR 20.0%
! TTATTCATTTATAGTTTCCC+CGG - chr5_4:61941799-61941818 None:intergenic 25.0%
! AAGAAAATACTTCCTCAAAT+AGG + chr5_4:61941826-61941845 Msa0862320:intron 25.0%
!!! CAAATTTGTCCGATTTTTTT+AGG - chr5_4:61941861-61941880 None:intergenic 25.0%
! ATAACATTATACATTGGAAG+GGG - chr5_4:61941899-61941918 None:intergenic 25.0%
! CATAACATTATACATTGGAA+GGG - chr5_4:61941900-61941919 None:intergenic 25.0%
! TCATAACATTATACATTGGA+AGG - chr5_4:61941901-61941920 None:intergenic 25.0%
! TATACATGCATTTAATGATG+TGG + chr5_4:61942010-61942029 Msa0862320:intron 25.0%
!! CTTGTTATAAGTGATTGTTT+AGG + chr5_4:61942126-61942145 Msa0862320:intron 25.0%
!!! TTGTTTAGGAGAACTTTTTT+TGG + chr5_4:61942140-61942159 Msa0862320:intron 25.0%
!!! CCGTTTGGATTTTTTTAATA+TGG + chr5_4:61942222-61942241 Msa0862320:intron 25.0%
! TGGAACATAAAAATACGTTT+CGG + chr5_4:61942242-61942261 Msa0862320:intron 25.0%
! TCTATGTCAATATAAAAGAC+AGG + chr5_4:61942279-61942298 Msa0862320:intron 25.0%
! TGCATCAAGATATTATCATT+TGG + chr5_4:61942803-61942822 Msa0862320:intron 25.0%
! GCATCAAGATATTATCATTT+GGG + chr5_4:61942804-61942823 Msa0862320:intron 25.0%
! ATCTATTAGGATTTAGTACT+AGG + chr5_4:61943765-61943784 Msa0862320:intron 25.0%
! TCTATTAGGATTTAGTACTA+GGG + chr5_4:61943766-61943785 Msa0862320:intron 25.0%
! TTATTGGAACTATTCAGTTA+TGG + chr5_4:61943821-61943840 Msa0862320:intron 25.0%
! CTAATTGAGTAAAACCTATT+TGG - chr5_4:61944485-61944504 None:intergenic 25.0%
! GCAAGTAAATAATTAAAGAG+AGG + chr5_4:61944562-61944581 Msa0862320:intron 25.0%
!!! AGCACAAATTTTCTCTAAAA+AGG - chr5_4:61944607-61944626 None:intergenic 25.0%
!!! AGACAAAAGTATTTGGTTAT+TGG + chr5_4:61944722-61944741 Msa0862320:intron 25.0%
!!! GACAAAAGTATTTGGTTATT+GGG + chr5_4:61944723-61944742 Msa0862320:intron 25.0%
!! AAACTTTTGTCAACAGTTTT+TGG + chr5_4:61944825-61944844 Msa0862320:intron 25.0%
! TGGATATAAATCTAATTCAG+AGG + chr5_4:61944845-61944864 Msa0862320:intron 25.0%
! GGATATAAATCTAATTCAGA+GGG + chr5_4:61944846-61944865 Msa0862320:intron 25.0%
! GATATAAATCTAATTCAGAG+GGG + chr5_4:61944847-61944866 Msa0862320:intron 25.0%
! TCATCTCAAATGATTAAAGA+AGG + chr5_4:61945064-61945083 Msa0862320:intron 25.0%
! TTCTGCTAAAGATATTTGTA+GGG - chr5_4:61945300-61945319 None:intergenic 25.0%
! TTTCTGCTAAAGATATTTGT+AGG - chr5_4:61945301-61945320 None:intergenic 25.0%
!! TGTAACTGTAATTTAGAACA+AGG + chr5_4:61945845-61945864 Msa0862320:intron 25.0%
!! TTTACTAATGATGTCCTTTT+TGG + chr5_4:61945941-61945960 Msa0862320:intron 25.0%
! ATCTTAAGTACTATCCAAAA+AGG - chr5_4:61945958-61945977 None:intergenic 25.0%
! AAATTCAAAATACAATACGG+CGG - chr5_4:61946118-61946137 None:intergenic 25.0%
! GGATAAAAGAAAAAAACAAC+AGG + chr5_4:61947344-61947363 Msa0862320:CDS 25.0%
! AAAAGAAAAAAACAACAGGA+AGG + chr5_4:61947348-61947367 Msa0862320:CDS 25.0%
! TTATGATTCTGTTAAGTTTC+AGG + chr5_4:61947813-61947832 Msa0862320:three_prime_UTR 25.0%
!! GACAATTATCTTTTCTTCTA+TGG + chr5_4:61947913-61947932 Msa0862320:three_prime_UTR 25.0%
TAACATTATACATTGGAAGG+GGG - chr5_4:61941898-61941917 None:intergenic 30.0%
AAAAATGTGAAATCCGTAGA+GGG - chr5_4:61942202-61942221 None:intergenic 30.0%
ATTATCTCATAGCTCCTTTA+CGG - chr5_4:61942604-61942623 None:intergenic 30.0%
! AGATAATGTTTTGTACGAGT+AGG + chr5_4:61942617-61942636 Msa0862320:intron 30.0%
! TGTGAGATCAAGTCTAAAAT+AGG - chr5_4:61942776-61942795 None:intergenic 30.0%
! CTGTTTTCAGAATTTCAAAG+AGG - chr5_4:61943361-61943380 None:intergenic 30.0%
!! TCGTTTGTTTTCTTCCATTT+GGG + chr5_4:61943554-61943573 Msa0862320:intron 30.0%
GTAACAAGTAAAATCCCAAA+TGG - chr5_4:61943571-61943590 None:intergenic 30.0%
! TTTTGCTTCCTCAATATCAA+CGG + chr5_4:61943611-61943630 Msa0862320:intron 30.0%
TAAGAATTCCGTTGATATTG+AGG - chr5_4:61943622-61943641 None:intergenic 30.0%
GTTCAATTAATCACATGTGT+TGG - chr5_4:61943891-61943910 None:intergenic 30.0%
TGTTTGTTCTTCATAGCTTA+TGG + chr5_4:61943964-61943983 Msa0862320:intron 30.0%
! CTGCTCTTTATGTTGTTTAT+CGG + chr5_4:61944062-61944081 Msa0862320:intron 30.0%
! TGCTCTTTATGTTGTTTATC+GGG + chr5_4:61944063-61944082 Msa0862320:intron 30.0%
! TTTTTGTGTCTCAGTAATGA+GGG + chr5_4:61944125-61944144 Msa0862320:intron 30.0%
GAGTCACAGAAAAAATACAA+TGG - chr5_4:61944222-61944241 None:intergenic 30.0%
! AGAAAAAGGAAGTACAAAGT+AGG - chr5_4:61944395-61944414 None:intergenic 30.0%
ATAGTCAAATGCAGAGAAAA+AGG - chr5_4:61944409-61944428 None:intergenic 30.0%
! ATAAATTTCAGTTTTGCTGC+AGG + chr5_4:61944430-61944449 Msa0862320:intron 30.0%
! TAAATTTCAGTTTTGCTGCA+GGG + chr5_4:61944431-61944450 Msa0862320:intron 30.0%
ATTAAAGAGAGGAGAAGAAA+AGG + chr5_4:61944573-61944592 Msa0862320:intron 30.0%
! TTTGTGCTTTTCATATTGTG+AGG + chr5_4:61944619-61944638 Msa0862320:intron 30.0%
TGTGAGTTCAATGAAATATG+TGG + chr5_4:61944691-61944710 Msa0862320:intron 30.0%
CTAAATTACTACTCAGACTA+AGG - chr5_4:61944931-61944950 None:intergenic 30.0%
TATTCACAAATGAAGGTTGT+AGG - chr5_4:61945190-61945209 None:intergenic 30.0%
! AGTTTCCACATCTTTAGAAA+AGG + chr5_4:61945370-61945389 Msa0862320:intron 30.0%
! GTTTCCACATCTTTAGAAAA+GGG + chr5_4:61945371-61945390 Msa0862320:intron 30.0%
! ACATCTTTAGAAAAGGGTAA+CGG + chr5_4:61945377-61945396 Msa0862320:intron 30.0%
ACTATCACAATTGTTCCAAA+TGG - chr5_4:61945446-61945465 None:intergenic 30.0%
TAAAAAATCAAAGAGAGGAG+AGG + chr5_4:61945518-61945537 Msa0862320:intron 30.0%
GAATCTACTACAAAGATGAA+AGG - chr5_4:61945578-61945597 None:intergenic 30.0%
TGTGTGTTAATGTCTTGTAT+TGG + chr5_4:61945775-61945794 Msa0862320:intron 30.0%
TTTGTATTGTGTCAAGTATC+TGG + chr5_4:61946169-61946188 Msa0862320:intron 30.0%
TTGTATTGTGTCAAGTATCT+GGG + chr5_4:61946170-61946189 Msa0862320:intron 30.0%
! TCCTTTTGCTTTAATTCGAT+TGG - chr5_4:61946570-61946589 None:intergenic 30.0%
AAAAGTTGTCTCAAACTCTT+CGG - chr5_4:61946738-61946757 None:intergenic 30.0%
! AGATTCAGAAACTCTTTTCA+AGG + chr5_4:61946961-61946980 Msa0862320:CDS 30.0%
GATGAAGAATAAGAGAATCA+AGG + chr5_4:61946988-61947007 Msa0862320:CDS 30.0%
AGATTCAGAAACAGATTGAA+AGG + chr5_4:61947044-61947063 Msa0862320:CDS 30.0%
GATTCAGAAACAGATTGAAA+GGG + chr5_4:61947045-61947064 Msa0862320:CDS 30.0%
! TTCTACATTTAGTTCCTTTG+TGG - chr5_4:61947128-61947147 None:intergenic 30.0%
AAGGAACTAAATGTAGAAGA+TGG + chr5_4:61947130-61947149 Msa0862320:CDS 30.0%
! ACTAAGATAGGATTTTCTCT+TGG + chr5_4:61947154-61947173 Msa0862320:CDS 30.0%
AAAACAACAGGAAGGATTAT+TGG + chr5_4:61947356-61947375 Msa0862320:CDS 30.0%
AAAGTGATTGACAAGTATGT+AGG + chr5_4:61947460-61947479 Msa0862320:CDS 30.0%
AAGTGATTGACAAGTATGTA+GGG + chr5_4:61947461-61947480 Msa0862320:CDS 30.0%
ACAAATGTCTTCATATTCCA+CGG - chr5_4:61947692-61947711 None:intergenic 30.0%
ACAAATGTCTTCATATTCCA+CGG - chr5_4:61947692-61947711 None:intergenic 30.0%
AGGAAAACAAGTCCTATTTG+AGG - chr5_4:61941841-61941860 None:intergenic 35.0%
AACATTATACATTGGAAGGG+GGG - chr5_4:61941897-61941916 None:intergenic 35.0%
ATACACATTAAGCGCATGTT+TGG + chr5_4:61942070-61942089 Msa0862320:intron 35.0%
CATATAAGCCCACAATAAGT+CGG - chr5_4:61942097-61942116 None:intergenic 35.0%
GAAAAATGTGAAATCCGTAG+AGG - chr5_4:61942203-61942222 None:intergenic 35.0%
! GGATTTCACATTTTTCCGTT+TGG + chr5_4:61942207-61942226 Msa0862320:intron 35.0%
ACATTATTGTCTACTCTTGC+TGG + chr5_4:61942415-61942434 Msa0862320:intron 35.0%
!! TCTGTAATTGGTTTGGACAA+AGG - chr5_4:61942499-61942518 None:intergenic 35.0%
TTGGATGTCTGTAATTGGTT+TGG - chr5_4:61942506-61942525 None:intergenic 35.0%
ATGATCAAGAAACCTAGCTT+AGG - chr5_4:61942574-61942593 None:intergenic 35.0%
TGATCATATGTTGTCCGTAA+AGG + chr5_4:61942587-61942606 Msa0862320:intron 35.0%
! GAATTTTGTGCAACACATCA+TGG + chr5_4:61942876-61942895 Msa0862320:intron 35.0%
ACTAATCCCTTAAACACTGT+GGG + chr5_4:61942997-61943016 Msa0862320:intron 35.0%
AGCAGCGTTAAAACTCTTTA+AGG - chr5_4:61943045-61943064 None:intergenic 35.0%
!! CTCGTTTGTTTTCTTCCATT+TGG + chr5_4:61943553-61943572 Msa0862320:intron 35.0%
CTGGGAGAAAACAATCTATT+AGG + chr5_4:61943752-61943771 Msa0862320:intron 35.0%
AATAAGCTATTACAGCAGCA+GGG - chr5_4:61943806-61943825 None:intergenic 35.0%
!!! GCTTTTAGCTTATGCAAGTT+TGG + chr5_4:61944008-61944027 Msa0862320:intron 35.0%
ATTACTGAGACACAAAAACC+GGG - chr5_4:61944123-61944142 None:intergenic 35.0%
CATTACTGAGACACAAAAAC+CGG - chr5_4:61944124-61944143 None:intergenic 35.0%
! GTTTTTGTGTCTCAGTAATG+AGG + chr5_4:61944124-61944143 Msa0862320:intron 35.0%
! TTTTGTGTCTCAGTAATGAG+GGG + chr5_4:61944126-61944145 Msa0862320:intron 35.0%
!! TCTAGTAGATCGGTTTTCTA+TGG + chr5_4:61944154-61944173 Msa0862320:intron 35.0%
!! CTAGTAGATCGGTTTTCTAT+GGG + chr5_4:61944155-61944174 Msa0862320:intron 35.0%
ACAGGGAAATACATACAGAT+GGG - chr5_4:61944189-61944208 None:intergenic 35.0%
AACAGGGAAATACATACAGA+TGG - chr5_4:61944190-61944209 None:intergenic 35.0%
TATCTAGTACATCATGTGCT+TGG + chr5_4:61944244-61944263 Msa0862320:intron 35.0%
ATCTAGTACATCATGTGCTT+GGG + chr5_4:61944245-61944264 Msa0862320:intron 35.0%
TAGGAAGTGATAGAGACAAT+TGG - chr5_4:61944376-61944395 None:intergenic 35.0%
! AAATTTCAGTTTTGCTGCAG+GGG + chr5_4:61944432-61944451 Msa0862320:intron 35.0%
TGAGTAAAACCTATTTGGGT+GGG - chr5_4:61944480-61944499 None:intergenic 35.0%
TTGAGTAAAACCTATTTGGG+TGG - chr5_4:61944481-61944500 None:intergenic 35.0%
TTATTGAGACTAGAGCTCAT+AGG + chr5_4:61944654-61944673 Msa0862320:intron 35.0%
TATTGAGACTAGAGCTCATA+GGG + chr5_4:61944655-61944674 Msa0862320:intron 35.0%
AATGTCGAATCAAGATCAAC+TGG + chr5_4:61944765-61944784 Msa0862320:intron 35.0%
ACTATTGCTCCATGTGTTAA+AGG - chr5_4:61944795-61944814 None:intergenic 35.0%
!!! TTTTTGGTTGACGAAAAACG+CGG + chr5_4:61944962-61944981 Msa0862320:intron 35.0%
AAAACGCGGAGTTATAACTA+AGG + chr5_4:61944976-61944995 Msa0862320:intron 35.0%
AAACGCGGAGTTATAACTAA+GGG + chr5_4:61944977-61944996 Msa0862320:intron 35.0%
GTGATTGTAAGTAATTGCAG+AGG - chr5_4:61945008-61945027 None:intergenic 35.0%
! TTTGACCGCTGATTAAAATC+TGG + chr5_4:61945091-61945110 Msa0862320:intron 35.0%
! TTGACCGCTGATTAAAATCT+GGG + chr5_4:61945092-61945111 Msa0862320:intron 35.0%
TTATGCTCTATGATTCCCAA+AGG + chr5_4:61945323-61945342 Msa0862320:intron 35.0%
AGATGTGGAAACTGTGATTA+AGG - chr5_4:61945363-61945382 None:intergenic 35.0%
!! GTTACCCTTTTCTAAAGATG+TGG - chr5_4:61945378-61945397 None:intergenic 35.0%
! AATGATTGGTTCAGCTGTAT+TGG + chr5_4:61945752-61945771 Msa0862320:intron 35.0%
TAATTAGCATTCATGTGCAC+AGG + chr5_4:61946253-61946272 Msa0862320:intron 35.0%
ATGCATTAGAACTTGAAGCA+AGG - chr5_4:61946354-61946373 None:intergenic 35.0%
ATTTCAGCTGTCTAAGAAGA+AGG + chr5_4:61946444-61946463 Msa0862320:intron 35.0%
GCCAATCGAATTAAAGCAAA+AGG + chr5_4:61946566-61946585 Msa0862320:CDS 35.0%
CAAAAATTTGCATTTGACGC+TGG - chr5_4:61946682-61946701 None:intergenic 35.0%
! CAGCGTCAAATGCAAATTTT+TGG + chr5_4:61946680-61946699 Msa0862320:CDS 35.0%
ACCGAGTTTGTCAAGTATTT+GGG + chr5_4:61946875-61946894 Msa0862320:CDS 35.0%
ACCCAAATACTTGACAAACT+CGG - chr5_4:61946879-61946898 None:intergenic 35.0%
TATGTAATGAACCATCCCTT+GGG - chr5_4:61946932-61946951 None:intergenic 35.0%
TAAGAGAATCAAGGCAGATT+TGG + chr5_4:61946997-61947016 Msa0862320:CDS 35.0%
AGATGAAGAAAAGCAAGAGA+AGG + chr5_4:61947021-61947040 Msa0862320:CDS 35.0%
GTAGAAGATGGAACTAAGAT+AGG + chr5_4:61947142-61947161 Msa0862320:CDS 35.0%
ATCAAGGATAGTGTTTGATG+AGG + chr5_4:61947216-61947235 Msa0862320:CDS 35.0%
ATGAAGAGAAATCTGAGGAA+AGG + chr5_4:61947242-61947261 Msa0862320:CDS 35.0%
TTCCTCTTCAGATTGTTCTT+GGG - chr5_4:61947271-61947290 None:intergenic 35.0%
TTTCCTCTTCAGATTGTTCT+TGG - chr5_4:61947272-61947291 None:intergenic 35.0%
AATCTGAAGAGGAAAGAAAG+TGG + chr5_4:61947277-61947296 Msa0862320:CDS 35.0%
!! AGCTTTGGAAGAAATGATCA+GGG + chr5_4:61947312-61947331 Msa0862320:CDS 35.0%
! AAGGATTATTGGTTGCATGA+GGG + chr5_4:61947367-61947386 Msa0862320:CDS 35.0%
TAAGGTTATGAGCAAAGTCT+TGG + chr5_4:61947399-61947418 Msa0862320:CDS 35.0%
AGTGATTGACAAGTATGTAG+GGG + chr5_4:61947462-61947481 Msa0862320:CDS 35.0%
GCCGTGTAAAAATAGTCAAT+GGG + chr5_4:61947563-61947582 Msa0862320:CDS 35.0%
!!! CCCCATTGACTATTTTTACA+CGG - chr5_4:61947567-61947586 None:intergenic 35.0%
CCGTGTAAAAATAGTCAATG+GGG + chr5_4:61947564-61947583 Msa0862320:CDS 35.0%
!! TACAGATCGTTTTTGTGCTA+AGG + chr5_4:61947624-61947643 Msa0862320:CDS 35.0%
ATCATTCCATCAAACTCACT+AGG - chr5_4:61947722-61947741 None:intergenic 35.0%
ATCATTCCATCAAACTCACT+AGG - chr5_4:61947722-61947741 None:intergenic 35.0%
TTCTGTTAAGTTTCAGGAGT+TGG + chr5_4:61947819-61947838 Msa0862320:three_prime_UTR 35.0%
TATGTGATTATAGTTGGGCA+AGG + chr5_4:61947972-61947991 Msa0862320:three_prime_UTR 35.0%
CTACTTGATGTGTCCTTAAA+TGG + chr5_4:61948020-61948039 Msa0862320:three_prime_UTR 35.0%
TTGATGTGTCCTTAAATGGA+CGG + chr5_4:61948024-61948043 Msa0862320:three_prime_UTR 35.0%
TTTATAGTTTCCCCGGTCTT+TGG - chr5_4:61941792-61941811 None:intergenic 40.0%
GGACAAATTTGAGAGAAGCA+TGG + chr5_4:61941870-61941889 Msa0862320:intron 40.0%
! ATGTTTGGACCGACTTATTG+TGG + chr5_4:61942085-61942104 Msa0862320:intron 40.0%
! TGTTTGGACCGACTTATTGT+GGG + chr5_4:61942086-61942105 Msa0862320:intron 40.0%
ACGTTTCGGACTATAGAATC+TGG + chr5_4:61942256-61942275 Msa0862320:intron 40.0%
GTGTAGCATCACATATCATG+AGG - chr5_4:61942360-61942379 None:intergenic 40.0%
GTTGGTTGGATGTCTGTAAT+TGG - chr5_4:61942511-61942530 None:intergenic 40.0%
TACTCTCTAGACATCATAGG+AGG - chr5_4:61942540-61942559 None:intergenic 40.0%
TCCTATGATGTCTAGAGAGT+AGG + chr5_4:61942539-61942558 Msa0862320:intron 40.0%
ACCTACTCTCTAGACATCAT+AGG - chr5_4:61942543-61942562 None:intergenic 40.0%
GTAATACGAGGTGGTATCTA+AGG + chr5_4:61942651-61942670 Msa0862320:intron 40.0%
CATCTTCTTCTAGCATAGGA+GGG - chr5_4:61942715-61942734 None:intergenic 40.0%
TCATCTTCTTCTAGCATAGG+AGG - chr5_4:61942716-61942735 None:intergenic 40.0%
GACTCATCTTCTTCTAGCAT+AGG - chr5_4:61942719-61942738 None:intergenic 40.0%
! TTAGTTCTCTCCTCCTCTAA+CGG - chr5_4:61942927-61942946 None:intergenic 40.0%
ACGACAAACTCTCCTTAAAG+CGG + chr5_4:61942951-61942970 Msa0862320:intron 40.0%
GACTAATCCCTTAAACACTG+TGG + chr5_4:61942996-61943015 Msa0862320:intron 40.0%
TTAGGTCCCACAGTGTTTAA+GGG - chr5_4:61943006-61943025 None:intergenic 40.0%
TTTAGGTCCCACAGTGTTTA+AGG - chr5_4:61943007-61943026 None:intergenic 40.0%
GGAGAGTTTGTCACTCATTT+AGG - chr5_4:61943024-61943043 None:intergenic 40.0%
TCGAGGTTAACCAAAGTCAT+GGG - chr5_4:61943091-61943110 None:intergenic 40.0%
TTCGAGGTTAACCAAAGTCA+TGG - chr5_4:61943092-61943111 None:intergenic 40.0%
!! GCTTCTGGTTTGAGAGATAT+CGG - chr5_4:61943472-61943491 None:intergenic 40.0%
! AACGAATCGAGAAAGCATGA+AGG - chr5_4:61943660-61943679 None:intergenic 40.0%
ATAAGCTATTACAGCAGCAG+GGG - chr5_4:61943805-61943824 None:intergenic 40.0%
CAATAAGCTATTACAGCAGC+AGG - chr5_4:61943807-61943826 None:intergenic 40.0%
CTGCTGCTGTAATAGCTTAT+TGG + chr5_4:61943805-61943824 Msa0862320:intron 40.0%
!! TATTATTGGTGTCGGTCTGT+CGG + chr5_4:61943929-61943948 Msa0862320:intron 40.0%
! CTTTATGTTGTTTATCGGGC+TGG + chr5_4:61944067-61944086 Msa0862320:intron 40.0%
TTTGTGTCTCAGTAATGAGG+GGG + chr5_4:61944127-61944146 Msa0862320:intron 40.0%
!! TAGATCGGTTTTCTATGGGA+AGG + chr5_4:61944159-61944178 Msa0862320:intron 40.0%
!! AGATCGGTTTTCTATGGGAA+GGG + chr5_4:61944160-61944179 Msa0862320:intron 40.0%
TTAAGTAACCCCACCCAAAT+AGG + chr5_4:61944468-61944487 Msa0862320:intron 40.0%
GAGTAAAACCTATTTGGGTG+GGG - chr5_4:61944479-61944498 None:intergenic 40.0%
GTAGACTCAAGTAGTTAGAG+AGG + chr5_4:61944516-61944535 Msa0862320:intron 40.0%
CTCAAGTAGTTAGAGAGGTT+AGG + chr5_4:61944521-61944540 Msa0862320:intron 40.0%
ACTGGAATGCCTTTAACACA+TGG + chr5_4:61944783-61944802 Msa0862320:intron 40.0%
AACGCGGAGTTATAACTAAG+GGG + chr5_4:61944978-61944997 Msa0862320:intron 40.0%
TCGCTAAAGCAGTAGCTAAT+TGG - chr5_4:61945265-61945284 None:intergenic 40.0%
TGGAAACTGTGATTAAGGTG+CGG - chr5_4:61945358-61945377 None:intergenic 40.0%
GAATGAGGCAATCTATCACA+GGG - chr5_4:61945412-61945431 None:intergenic 40.0%
GTTCTACTCTCTCTAACTAC+TGG - chr5_4:61945474-61945493 None:intergenic 40.0%
GGCACAAATTTCCTCTTAAG+AGG - chr5_4:61945557-61945576 None:intergenic 40.0%
AGACAAAGTATGGTTACCAG+AGG - chr5_4:61945665-61945684 None:intergenic 40.0%
CAAAATACAATACGGCGGTA+AGG - chr5_4:61946113-61946132 None:intergenic 40.0%
AGTTCATCCAGATTGCCAAT+GGG + chr5_4:61946512-61946531 Msa0862320:intron 40.0%
!!! AGAAAGTCGTTTTTCCCCAT+TGG - chr5_4:61946530-61946549 None:intergenic 40.0%
AAACGACTTTCTCACACCTA+AGG + chr5_4:61946538-61946557 Msa0862320:CDS 40.0%
ATTCGATTGGCAATTGCCTT+AGG - chr5_4:61946557-61946576 None:intergenic 40.0%
CTGTGGAGTTCATATGAACA+TGG - chr5_4:61946841-61946860 None:intergenic 40.0%
TTCATATGAACTCCACAGAG+TGG + chr5_4:61946843-61946862 Msa0862320:CDS 40.0%
TCATATGAACTCCACAGAGT+GGG + chr5_4:61946844-61946863 Msa0862320:CDS 40.0%
CACCGAGTTTGTCAAGTATT+TGG + chr5_4:61946874-61946893 Msa0862320:CDS 40.0%
GTATGTAATGAACCATCCCT+TGG - chr5_4:61946933-61946952 None:intergenic 40.0%
!! GGTTGATGAAGAGAAATCTG+AGG + chr5_4:61947237-61947256 Msa0862320:CDS 40.0%
ATCCCAAGAACAATCTGAAG+AGG + chr5_4:61947266-61947285 Msa0862320:CDS 40.0%
!! CAGCTTTGGAAGAAATGATC+AGG + chr5_4:61947311-61947330 Msa0862320:CDS 40.0%
TTTGGAAGAAATGATCAGGG+AGG + chr5_4:61947315-61947334 Msa0862320:CDS 40.0%
! GAAGGATTATTGGTTGCATG+AGG + chr5_4:61947366-61947385 Msa0862320:CDS 40.0%
! GCATGAGGGAATTGTTGTTA+AGG + chr5_4:61947381-61947400 Msa0862320:CDS 40.0%
!! AAGGGGTACTACAAGCAAAA+GGG + chr5_4:61947427-61947446 Msa0862320:CDS 40.0%
AAACTGTGATACCACAGGTT+GGG + chr5_4:61947539-61947558 Msa0862320:CDS 40.0%
GGCCGTGTAAAAATAGTCAA+TGG + chr5_4:61947562-61947581 Msa0862320:CDS 40.0%
!! ATAGAGAAAGGTGCCTATGA+TGG + chr5_4:61947652-61947671 Msa0862320:CDS 40.0%
TTTAAGCACCCTACCATCAT+AGG - chr5_4:61947668-61947687 None:intergenic 40.0%
AAGTAGCCTAGTGAGTTTGA+TGG + chr5_4:61947713-61947732 Msa0862320:exon 40.0%
GTGAGTTTGATGGAATGATG+AGG + chr5_4:61947723-61947742 Msa0862320:exon 40.0%
AAGTAGCCTAGTGAGTTTGA+TGG + chr5_4:61947713-61947732 Msa0862320:exon 40.0%
TCACAATCACCGTCCATTTA+AGG - chr5_4:61948036-61948055 None:intergenic 40.0%
! TCTTTGGAGGATACCTTAGG+TGG - chr5_4:61941776-61941795 None:intergenic 45.0%
! CTAAGGTATCCTCCAAAGAC+CGG + chr5_4:61941777-61941796 Msa0862320:intron 45.0%
! TAAGGTATCCTCCAAAGACC+GGG + chr5_4:61941778-61941797 Msa0862320:intron 45.0%
AGAAGATATCTAGCCATGCG+AGG - chr5_4:61942453-61942472 None:intergenic 45.0%
! ATAGGAGGACAAGAGTTGGT+TGG - chr5_4:61942525-61942544 None:intergenic 45.0%
CATCATAGGAGGACAAGAGT+TGG - chr5_4:61942529-61942548 None:intergenic 45.0%
AGGTTTCACATGCCTAAGCT+AGG + chr5_4:61942559-61942578 Msa0862320:intron 45.0%
GATGTTGACCAGGTAATACG+AGG + chr5_4:61942639-61942658 Msa0862320:intron 45.0%
AGATACCACCTCGTATTACC+TGG - chr5_4:61942650-61942669 None:intergenic 45.0%
GGATACCACATCCATACATG+TGG + chr5_4:61942672-61942691 Msa0862320:intron 45.0%
TGAGTCCCTTGCAGATATTG+AGG + chr5_4:61942733-61942752 Msa0862320:intron 45.0%
TCCCTTGCAGATATTGAGGA+CGG + chr5_4:61942737-61942756 Msa0862320:intron 45.0%
TCCGTCCTCAATATCTGCAA+GGG - chr5_4:61942741-61942760 None:intergenic 45.0%
! TCATTTGGGATACTAGCCAG+TGG + chr5_4:61942818-61942837 Msa0862320:intron 45.0%
TTTGTGCAACACATCATGGC+AGG + chr5_4:61942880-61942899 Msa0862320:intron 45.0%
TTGTGCAACACATCATGGCA+GGG + chr5_4:61942881-61942900 Msa0862320:intron 45.0%
CGACAAACTCTCCTTAAAGC+GGG + chr5_4:61942952-61942971 Msa0862320:intron 45.0%
!! GATTAGTCTCTACAGTTGCG+CGG - chr5_4:61942984-61943003 None:intergenic 45.0%
TGGATTCGAACCCATGACTT+TGG + chr5_4:61943078-61943097 Msa0862320:intron 45.0%
TTAAATCACGGGTCTCTTCG+AGG - chr5_4:61943108-61943127 None:intergenic 45.0%
ACCAGAAGCAATCCTTTCCT+AGG + chr5_4:61943483-61943502 Msa0862320:intron 45.0%
CCAGAAGCAATCCTTTCCTA+GGG + chr5_4:61943484-61943503 Msa0862320:intron 45.0%
GAACAGCAAAACCCTAGGAA+AGG - chr5_4:61943498-61943517 None:intergenic 45.0%
!!! TTCCTAGGGTTTTGCTGTTC+AGG + chr5_4:61943498-61943517 Msa0862320:intron 45.0%
!!! TTTTTGGTTTAGAGGCTGCC+CGG + chr5_4:61944102-61944121 Msa0862320:intron 45.0%
TTGTGTCTCAGTAATGAGGG+GGG + chr5_4:61944128-61944147 Msa0862320:intron 45.0%
AGGGGGGTTATCTAGTAGAT+CGG + chr5_4:61944144-61944163 Msa0862320:intron 45.0%
GATGAGATGCTGTGCTTGTT+CGG - chr5_4:61945049-61945068 None:intergenic 45.0%
!! TGCGCCCAGATTTTAATCAG+CGG - chr5_4:61945099-61945118 None:intergenic 45.0%
GGAATGAGGCAATCTATCAC+AGG - chr5_4:61945413-61945432 None:intergenic 45.0%
ATTCCTTCACGCACACCATT+TGG + chr5_4:61945428-61945447 Msa0862320:intron 45.0%
CTACTCTCTCTAACTACTGG+AGG - chr5_4:61945471-61945490 None:intergenic 45.0%
ATCAAAGAGAGGAGAGGAAG+AGG + chr5_4:61945524-61945543 Msa0862320:intron 45.0%
TCAAAGAGAGGAGAGGAAGA+GGG + chr5_4:61945525-61945544 Msa0862320:intron 45.0%
!! AGAAGAAGGAAGTGTCAGAC+AGG + chr5_4:61946458-61946477 Msa0862320:intron 45.0%
CAGTTCATCCAGATTGCCAA+TGG + chr5_4:61946511-61946530 Msa0862320:intron 45.0%
GTTCATCCAGATTGCCAATG+GGG + chr5_4:61946513-61946532 Msa0862320:intron 45.0%
! GTTTTTCCCCATTGGCAATC+TGG - chr5_4:61946522-61946541 None:intergenic 45.0%
CAAAAGGACTGCAGAAGCTT+CGG + chr5_4:61946582-61946601 Msa0862320:CDS 45.0%
AAGCAGTGTCGTGATGAGAA+TGG + chr5_4:61946626-61946645 Msa0862320:CDS 45.0%
AAATGCCACTGCATGAGTGA+AGG + chr5_4:61946653-61946672 Msa0862320:CDS 45.0%
AATGCCACTGCATGAGTGAA+GGG + chr5_4:61946654-61946673 Msa0862320:CDS 45.0%
AAACCCAACCCGCATAATAG+AGG + chr5_4:61946706-61946725 Msa0862320:CDS 45.0%
AACCCAACCCGCATAATAGA+GGG + chr5_4:61946707-61946726 Msa0862320:CDS 45.0%
GGTATAGCCCTCTATTATGC+GGG - chr5_4:61946717-61946736 None:intergenic 45.0%
CGGTATAGCCCTCTATTATG+CGG - chr5_4:61946718-61946737 None:intergenic 45.0%
GTCAAGTATTTGGGTCGAAC+TGG + chr5_4:61946884-61946903 Msa0862320:CDS 45.0%
TAAGGTTGAAGAAACGCCCA+AGG + chr5_4:61946913-61946932 Msa0862320:CDS 45.0%
AAGGTTGAAGAAACGCCCAA+GGG + chr5_4:61946914-61946933 Msa0862320:CDS 45.0%
TTTGTGGTCTGTACCTGTGA+AGG - chr5_4:61947112-61947131 None:intergenic 45.0%
TTCACAGGTACAGACCACAA+AGG + chr5_4:61947111-61947130 Msa0862320:CDS 45.0%
ATCAGCTAAACCTGTGACCA+AGG + chr5_4:61947180-61947199 Msa0862320:CDS 45.0%
AAACCTGTGACCAAGGAAAC+AGG + chr5_4:61947187-61947206 Msa0862320:CDS 45.0%
TGATGCATCACCTGTTTCCT+TGG - chr5_4:61947200-61947219 None:intergenic 45.0%
AGGAAACAGGTGATGCATCA+AGG + chr5_4:61947200-61947219 Msa0862320:CDS 45.0%
CTGAAGAGGAAAGAAAGTGG+TGG + chr5_4:61947280-61947299 Msa0862320:CDS 45.0%
AAGAGGAAAGAAAGTGGTGG+TGG + chr5_4:61947283-61947302 Msa0862320:CDS 45.0%
!! TGGTGGTGGAAAATCAGCTT+TGG + chr5_4:61947297-61947316 Msa0862320:CDS 45.0%
AAATGATCAGGGAGGAAGAG+AGG + chr5_4:61947323-61947342 Msa0862320:CDS 45.0%
AGCAAAGTCTTGGCTGAGAA+GGG + chr5_4:61947409-61947428 Msa0862320:CDS 45.0%
!! GAAGGGGTACTACAAGCAAA+AGG + chr5_4:61947426-61947445 Msa0862320:CDS 45.0%
! GCATGTGCTTAGAGTTGATC+AGG + chr5_4:61947507-61947526 Msa0862320:CDS 45.0%
GCTTGAAACTGTGATACCAC+AGG + chr5_4:61947534-61947553 Msa0862320:CDS 45.0%
GAAACTGTGATACCACAGGT+TGG + chr5_4:61947538-61947557 Msa0862320:CDS 45.0%
AACTGTGATACCACAGGTTG+GGG + chr5_4:61947540-61947559 Msa0862320:CDS 45.0%
ATAGTCAATGGGGCATATCG+TGG + chr5_4:61947574-61947593 Msa0862320:CDS 45.0%
CATATCGTGGATCACTTGCT+AGG + chr5_4:61947587-61947606 Msa0862320:CDS 45.0%
GCTAAGGTGCAGATAGAGAA+AGG + chr5_4:61947640-61947659 Msa0862320:CDS 45.0%
!! AGAAAGGTGCCTATGATGGT+AGG + chr5_4:61947656-61947675 Msa0862320:CDS 45.0%
!! GAAAGGTGCCTATGATGGTA+GGG + chr5_4:61947657-61947676 Msa0862320:CDS 45.0%
!!! TTATTTTTTCAAATTATTAT+TGG + chr5_4:61943915-61943934 Msa0862320:intron 5.0%
TGTACTCACCCAACCACCTA+AGG + chr5_4:61941760-61941779 Msa0862320:intron 50.0%
GGAGGATACCTTAGGTGGTT+GGG - chr5_4:61941771-61941790 None:intergenic 50.0%
TGGAGGATACCTTAGGTGGT+TGG - chr5_4:61941772-61941791 None:intergenic 50.0%
! CGGTCTTTGGAGGATACCTT+AGG - chr5_4:61941779-61941798 None:intergenic 50.0%
! AAGGTATCCTCCAAAGACCG+GGG + chr5_4:61941779-61941798 Msa0862320:intron 50.0%
ATAGTTTCCCCGGTCTTTGG+AGG - chr5_4:61941789-61941808 None:intergenic 50.0%
GATATCTAGCCATGCGAGGT+CGG - chr5_4:61942449-61942468 None:intergenic 50.0%
GTACGAGTAGGATGTTGACC+AGG + chr5_4:61942629-61942648 Msa0862320:intron 50.0%
GTTGACCAGGTAATACGAGG+TGG + chr5_4:61942642-61942661 Msa0862320:intron 50.0%
! AGGAGGGTTTTTCGCATGTG+CGG - chr5_4:61942699-61942718 None:intergenic 50.0%
CTCCGTCCTCAATATCTGCA+AGG - chr5_4:61942742-61942761 None:intergenic 50.0%
TGCAGATATTGAGGACGGAG+AGG + chr5_4:61942742-61942761 Msa0862320:intron 50.0%
AGATATTGAGGACGGAGAGG+CGG + chr5_4:61942745-61942764 Msa0862320:intron 50.0%
AGCCAGTGGACAAGTGTAGA+AGG + chr5_4:61942832-61942851 Msa0862320:intron 50.0%
CTCCTTCTACACTTGTCCAC+TGG - chr5_4:61942837-61942856 None:intergenic 50.0%
GTGGACAAGTGTAGAAGGAG+CGG + chr5_4:61942837-61942856 Msa0862320:intron 50.0%
TGGACAAGTGTAGAAGGAGC+GGG + chr5_4:61942838-61942857 Msa0862320:intron 50.0%
ACACATCATGGCAGGGACTA+AGG + chr5_4:61942888-61942907 Msa0862320:intron 50.0%
CACATCATGGCAGGGACTAA+GGG + chr5_4:61942889-61942908 Msa0862320:intron 50.0%
CGCTGCTGCATGTACAATGT+TGG + chr5_4:61943058-61943077 Msa0862320:intron 50.0%
CCCTAGGAAAGGATTGCTTC+TGG - chr5_4:61943487-61943506 None:intergenic 50.0%
GACCTGAACAGCAAAACCCT+AGG - chr5_4:61943503-61943522 None:intergenic 50.0%
CGCGTGTCTAGTATCTGACA+CGG + chr5_4:61943860-61943879 Msa0862320:intron 50.0%
ACAATGGCGCTGCGATAACA+GGG - chr5_4:61944206-61944225 None:intergenic 50.0%
TACAATGGCGCTGCGATAAC+AGG - chr5_4:61944207-61944226 None:intergenic 50.0%
GAGACTAGAGCTCATAGGGA+AGG + chr5_4:61944659-61944678 Msa0862320:intron 50.0%
ATGGTGTGCGTGAAGGAATG+AGG - chr5_4:61945427-61945446 None:intergenic 50.0%
GTTCCAAATGGTGTGCGTGA+AGG - chr5_4:61945434-61945453 None:intergenic 50.0%
! GAGGGTCTTGTCCTCTTAAG+AGG + chr5_4:61945543-61945562 Msa0862320:intron 50.0%
TTTCCACATAGCCCTCTCCT+CGG + chr5_4:61945618-61945637 Msa0862320:intron 50.0%
ACCAGAGGTGAGAAAGAGAG+CGG - chr5_4:61945650-61945669 None:intergenic 50.0%
TCTCATCACGACACTGCTTC+TGG - chr5_4:61946625-61946644 None:intergenic 50.0%
AGCCCTCTATTATGCGGGTT+GGG - chr5_4:61946712-61946731 None:intergenic 50.0%
TAGCCCTCTATTATGCGGGT+TGG - chr5_4:61946713-61946732 None:intergenic 50.0%
AAACTACAGTCGCAGCCACA+CGG - chr5_4:61946793-61946812 None:intergenic 50.0%
! GGGTCGAACTGGAAAGTGTA+AGG + chr5_4:61946895-61946914 Msa0862320:CDS 50.0%
TTGAAGAAACGCCCAAGGGA+TGG + chr5_4:61946918-61946937 Msa0862320:CDS 50.0%
TGTGAAGGCTGATCAGACTC+GGG - chr5_4:61947097-61947116 None:intergenic 50.0%
CTGTGAAGGCTGATCAGACT+CGG - chr5_4:61947098-61947117 None:intergenic 50.0%
TCACCTGTTTCCTTGGTCAC+AGG - chr5_4:61947193-61947212 None:intergenic 50.0%
GAGCAAAGTCTTGGCTGAGA+AGG + chr5_4:61947408-61947427 Msa0862320:CDS 50.0%
GCAAAGTCTTGGCTGAGAAG+GGG + chr5_4:61947410-61947429 Msa0862320:CDS 50.0%
! ACTGTGATACCACAGGTTGG+GGG + chr5_4:61947541-61947560 Msa0862320:CDS 50.0%
! TGATGAGGTGCTTAAAGCCG+TGG + chr5_4:61947738-61947757 Msa0862320:three_prime_UTR 50.0%
! GGGCAAGGAAAGTGCAGAAA+AGG + chr5_4:61947987-61948006 Msa0862320:three_prime_UTR 50.0%
! GTAGAGGGCGTGAGAAGGAT+GGG - chr5_4:61942187-61942206 None:intergenic 55.0%
CATCCTTCTCACGCCCTCTA+CGG + chr5_4:61942186-61942205 Msa0862320:intron 55.0%
! AATCCGTAGAGGGCGTGAGA+AGG - chr5_4:61942192-61942211 None:intergenic 55.0%
CCTGAAACGAGCGTGTCTAG+CGG - chr5_4:61942395-61942414 None:intergenic 55.0%
GATCATATGCCGACCTCGCA+TGG + chr5_4:61942437-61942456 Msa0862320:intron 55.0%
! GGAGGGTTTTTCGCATGTGC+GGG - chr5_4:61942698-61942717 None:intergenic 55.0%
GAGCGGGCAAGTGCACAATA+TGG + chr5_4:61942854-61942873 Msa0862320:intron 55.0%
ATCATGGCAGGGACTAAGGG+AGG + chr5_4:61942892-61942911 Msa0862320:intron 55.0%
GAGGAGTGGTGTACCGTTAG+AGG + chr5_4:61942911-61942930 Msa0862320:intron 55.0%
GAGTGGTGTACCGTTAGAGG+AGG + chr5_4:61942914-61942933 Msa0862320:intron 55.0%
TAGTCTCTACAGTTGCGCGG+AGG - chr5_4:61942981-61943000 None:intergenic 55.0%
GTGATTAAGGTGCGGCAGTC+TGG - chr5_4:61945350-61945369 None:intergenic 55.0%
GAGGAGAGGGCTATGTGGAA+AGG - chr5_4:61945619-61945638 None:intergenic 55.0%
!! AAAGAGAGCGGTGTTGACCG+AGG - chr5_4:61945638-61945657 None:intergenic 55.0%
ACCGCTCTCTTTCTCACCTC+TGG + chr5_4:61945646-61945665 Msa0862320:intron 55.0%
AAGGACTGCAGAAGCTTCGG+TGG + chr5_4:61946585-61946604 Msa0862320:CDS 55.0%
CGAGTCTGATCAGCCTTCAC+AGG + chr5_4:61947096-61947115 Msa0862320:CDS 55.0%
! TGGATCACTTGCTAGGCTGC+TGG + chr5_4:61947594-61947613 Msa0862320:CDS 55.0%
! GGATCACTTGCTAGGCTGCT+GGG + chr5_4:61947595-61947614 Msa0862320:CDS 55.0%
! GATCACTTGCTAGGCTGCTG+GGG + chr5_4:61947596-61947615 Msa0862320:CDS 55.0%
! ATCACTTGCTAGGCTGCTGG+GGG + chr5_4:61947597-61947616 Msa0862320:CDS 55.0%
! TGGTAGGGTGCTTAAAGCCG+TGG + chr5_4:61947672-61947691 Msa0862320:CDS 55.0%
GGGCGTGAGAAGGATGGGAA+CGG - chr5_4:61942182-61942201 None:intergenic 60.0%
! CGTAGAGGGCGTGAGAAGGA+TGG - chr5_4:61942188-61942207 None:intergenic 60.0%
CCGCTAGACACGCTCGTTTC+AGG + chr5_4:61942392-61942411 Msa0862320:intron 60.0%
GCGGGCCACATGTATGGATG+TGG - chr5_4:61942680-61942699 None:intergenic 60.0%
GCATGTGCGGGCCACATGTA+TGG - chr5_4:61942686-61942705 None:intergenic 60.0%
CGCGGAGGATACCCGCTTTA+AGG - chr5_4:61942966-61942985 None:intergenic 60.0%
CGGAGAGAGAAACGCGAGAG+AGG - chr5_4:61943452-61943471 None:intergenic 60.0%
GTGCGGCAGTCTGGACCTTT+GGG - chr5_4:61945341-61945360 None:intergenic 60.0%
TGACCGAGGAGAGGGCTATG+TGG - chr5_4:61945624-61945643 None:intergenic 60.0%
!! AGCGGTGTTGACCGAGGAGA+GGG - chr5_4:61945632-61945651 None:intergenic 60.0%
GGTGCCCTTCACTCATGCAG+TGG - chr5_4:61946661-61946680 None:intergenic 60.0%
!! CAGCCATCGATTCAGCCGTG+TGG + chr5_4:61946775-61946794 Msa0862320:CDS 60.0%
CAGCCACACGGCTGAATCGA+TGG - chr5_4:61946781-61946800 None:intergenic 60.0%
GGTGAGTGTAGCCCACTCTG+TGG - chr5_4:61946858-61946877 None:intergenic 60.0%
TTTACACGGCCCCCAACCTG+TGG - chr5_4:61947553-61947572 None:intergenic 60.0%
GGCAGGGACTAAGGGAGGAG+TGG + chr5_4:61942897-61942916 Msa0862320:intron 65.0%
GGTGCGGCAGTCTGGACCTT+TGG - chr5_4:61945342-61945361 None:intergenic 65.0%
!! GAGCGGTGTTGACCGAGGAG+AGG - chr5_4:61945633-61945652 None:intergenic 65.0%
! ACTTGCTAGGCTGCTGGGGG+TGG + chr5_4:61947600-61947619 Msa0862320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61941749 61948107 61941749 ID=Msa0862320;Name=Msa0862320
chr5_4 mRNA 61941749 61948107 61941749 ID=Msa0862320-mRNA-1;Parent=Msa0862320;Name=Msa0862320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.5|0.5|0|1|2|384|405
chr5_4 exon 61941749 61941756 61941749 ID=Msa0862320-mRNA-1:exon:19241;Parent=Msa0862320-mRNA-1
chr5_4 exon 61946514 61948107 61946514 ID=Msa0862320-mRNA-1:exon:19242;Parent=Msa0862320-mRNA-1
chr5_4 CDS 61941749 61941756 61941749 ID=Msa0862320-mRNA-1:cds;Parent=Msa0862320-mRNA-1
chr5_4 CDS 61946514 61947723 61946514 ID=Msa0862320-mRNA-1:cds;Parent=Msa0862320-mRNA-1
chr5_4 three_prime_UTR 61947724 61948107 61947724 ID=Msa0862320-mRNA-1:three_prime_utr;Parent=Msa0862320-mRNA-1
Gene Sequence

>Msa0862320

ATGAATATTTCATCCAGATTGCCAATGGGGAAAAACGACTTTCTCACACCTAAGGCAATTGCCAATCGAATTAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGTCAGATGTGCCAGAAGCAGTGTCGTGATGAGAATGGTTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGTCAAAACCCAACCCGCATAATAGAGGGCTATACCGAAGAGTTTGAGACAACTTTTCTTGAGCATATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCGACTGTAGTTTATAATGAATACATAAATGATAGAAACCATGTTCATATGAACTCCACAGAGTGGGCTACACTCACCGAGTTTGTCAAGTATTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACGCCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTCAAGGAGAAGATGAAGAATAAGAGAATCAAGGCAGATTTGGTAGATGAAGAAAAGCAAGAGAAGGAGATTCAGAAACAGATTGAAAGGGCTGAGCAAATGATGCAGCAGTCTAATCCCGAGTCTGATCAGCCTTCACAGGTACAGACCACAAAGGAACTAAATGTAGAAGATGGAACTAAGATAGGATTTTCTCTTGGATCATCAGCTAAACCTGTGACCAAGGAAACAGGTGATGCATCAAGGATAGTGTTTGATGAGGTTGATGAAGAGAAATCTGAGGAAAGGAATCCCAAGAACAATCTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGAAGAAATGATCAGGGAGGAAGAGAGGATAAAAGAAAAAAACAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGAAAAAAGTGATTGACAAGTATGTAGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTTAGAGTTGATCAGGAAGAGCTTGAAACTGTGATACCACAGGTTGGGGGCCGTGTAAAAATAGTCAATGGGGCATATCGTGGATCACTTGCTAGGCTGCTGGGGGTGGATACAGATCGTTTTTGTGCTAAGGTGCAGATAGAGAAAGGTGCCTATGATGGTAGGGTGCTTAAAGCCGTGGAATATGAAGACATTTGTAAAGTAGCCTAG
Protein sequence

>Msa0862320

MNISSRLPMGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEIQKQIERAEQMMQQSNPESDQPSQVQTTKELNVEDGTKIGFSLGSSAKPVTKETGDASRIVFDEVDEEKSEERNPKNNLKRKESGGGKSALEEMIREEERIKEKNNRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKVA*