AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980990 MtrunA17_Chr6g0461561 97.338 601 16 0 1 601 1 601 0.0 1213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980990 AT1G54385.2 60.852 493 157 13 1 478 1 472 0.0 540
Msa0980990 AT1G54385.1 60.852 493 157 13 1 478 1 472 0.0 540
Msa0980990 AT1G54385.3 60.852 493 157 13 1 478 1 472 0.0 540
Msa0980990 AT3G03970.1 58.108 296 119 3 1 294 1 293 1.34e-110 342
Msa0980990 AT3G03970.4 58.108 296 119 3 1 294 1 293 1.34e-110 342
Msa0980990 AT3G03970.2 58.108 296 119 3 1 294 1 293 1.34e-110 342
Msa0980990 AT3G03970.6 58.108 296 119 3 1 294 1 293 1.34e-110 342
Msa0980990 AT3G03970.3 58.108 296 119 3 1 294 1 293 1.34e-110 342
Msa0980990 AT3G03970.5 58.108 296 119 3 1 294 1 293 1.34e-110 342

Find 138 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCCTTGTCTAGGACTTC+TGG 0.186852 6_4:+19674838 None:intergenic
CTCTTGTTGATTCGGATAAT+TGG 0.194402 6_4:-19675624 Msa0980990:CDS
CAATGGCCACACCTTTAATT+TGG 0.198465 6_4:-19674035 Msa0980990:CDS
AAAATCTCTTCCACTAAAAT+TGG 0.218674 6_4:+19675165 None:intergenic
CTTCTGATGAAATGGTTAAT+AGG 0.231433 6_4:-19675594 Msa0980990:CDS
AGGACTTGTGTTGGTACTTC+TGG 0.242409 6_4:+19674814 None:intergenic
TGACTGTTGAGCCAAATTAA+AGG 0.253297 6_4:+19674024 None:intergenic
CTCGAATACTTCCCTGGATA+TGG 0.257300 6_4:-19675073 Msa0980990:CDS
CGGTGCAGCTCTTTGCTTGA+AGG 0.266619 6_4:-19675647 Msa0980990:CDS
TGTTCAGCTAAATTTAAAAT+AGG 0.287196 6_4:-19673740 Msa0980990:three_prime_UTR
CGTGATTTGCTAAACCATTC+TGG 0.288816 6_4:+19674283 None:intergenic
TTCTGATGAAATGGTTAATA+GGG 0.294905 6_4:-19675593 Msa0980990:CDS
AAAATCTTATGTGAAAGATT+TGG 0.307204 6_4:-19676010 Msa0980990:CDS
GAAGTTCTTGCTAGGGTTCA+TGG 0.313252 6_4:-19675898 Msa0980990:CDS
AAGCTTTGGAGCCTTGAAAA+TGG 0.313399 6_4:-19674974 Msa0980990:CDS
CGAAGCTAAAGTCTGAATTA+TGG 0.319489 6_4:+19675837 None:intergenic
AGAGAGCGGATGAGCCTCTT+TGG 0.319935 6_4:+19674417 None:intergenic
ATGGATGGAGATAGTTCTTC+AGG 0.327702 6_4:-19675142 Msa0980990:CDS
GACTAATTTGCATATGGGTT+TGG 0.331345 6_4:-19675527 Msa0980990:CDS
ATAGATTGACATGTCGAAAT+AGG 0.342937 6_4:+19675034 None:intergenic
TACTCAGACTAATTTGCATA+TGG 0.347854 6_4:-19675533 Msa0980990:CDS
ATTCCTTGTCTAGGACTTCT+GGG 0.359079 6_4:+19674839 None:intergenic
GCAGTGCCAGTCCGATAAAA+TGG 0.359720 6_4:-19675290 Msa0980990:CDS
TTCTTATCCTCCGGCATCGT+TGG 0.368225 6_4:+19675742 None:intergenic
CTAACGCCACAGCAACATTC+TGG 0.372076 6_4:+19675566 None:intergenic
CTTGAAGGCTCTTGTTGATT+CGG 0.374085 6_4:-19675632 Msa0980990:CDS
GTTCCAGCTGTCGCTAGATA+TGG 0.391848 6_4:-19675772 Msa0980990:CDS
TATCATCAGGCAATATTGAT+TGG 0.394849 6_4:-19674332 Msa0980990:CDS
TAAACTTCCCAACATTTAGT+TGG 0.395299 6_4:+19673886 None:intergenic
AAGGAAACCGGTACTGTGTC+TGG 0.401751 6_4:-19675943 Msa0980990:CDS
GCTCGACTGCTCATACAATC+TGG 0.402952 6_4:-19675460 Msa0980990:CDS
AAATGTCAGTGGAGAGTCTA+TGG 0.416004 6_4:-19675425 Msa0980990:CDS
TCGAAATAGGAGACTCAGCC+AGG 0.416735 6_4:+19675047 None:intergenic
AGGGTCGTTCCCTCTTCAAC+AGG 0.420199 6_4:-19675809 Msa0980990:CDS
GTTAATTCCAACTAAATGTT+GGG 0.421988 6_4:-19673893 Msa0980990:three_prime_UTR
TCAGCCAGGGATCCATATCC+AGG 0.434902 6_4:+19675061 None:intergenic
AAGAGTCCTGCTTCGGTGAC+GGG 0.435698 6_4:-19675190 Msa0980990:CDS
GGAGTGTCAATAGGAAGCTT+TGG 0.436103 6_4:-19674988 Msa0980990:CDS
AATGTTGCTGTGGCGTTAGA+AGG 0.439725 6_4:-19675562 Msa0980990:CDS
GGTTAATTCCAACTAAATGT+TGG 0.440560 6_4:-19673894 Msa0980990:three_prime_UTR
ATATGTTTCTTCTTATCCTC+CGG 0.443407 6_4:+19675733 None:intergenic
GCGGTTTGCTTCTGATGAAA+TGG 0.451524 6_4:-19675602 Msa0980990:CDS
CGCTGTATGAAGTTCTTGCT+AGG 0.452007 6_4:-19675906 Msa0980990:CDS
CAGACTTTAGCTTCGAGTGC+AGG 0.455292 6_4:-19675829 Msa0980990:CDS
CACCGCAACTCAAACTATCC+AGG 0.460113 6_4:+19675665 None:intergenic
ATTCACGAAGGAGTGTCAAT+AGG 0.472798 6_4:-19674997 Msa0980990:CDS
GACTGAATTCTACCTTATGT+TGG 0.475102 6_4:-19673783 Msa0980990:three_prime_UTR
TTGGAACCCGTCACCGAAGC+AGG 0.476986 6_4:+19675184 None:intergenic
ATCTTTCGTCATTCTTGCAA+TGG 0.478922 6_4:-19674052 Msa0980990:CDS
TGCATGATACTGTCAATCAT+TGG 0.479754 6_4:+19675862 None:intergenic
ATTCATCTAATTCCAACATA+AGG 0.480009 6_4:+19673771 None:intergenic
TGCTCAAGTTTCTGAGACCA+AGG 0.480477 6_4:-19675962 Msa0980990:CDS
CTTCTGGATATTCCTTGTCT+AGG 0.481467 6_4:+19674830 None:intergenic
ACCAAGCGCAGATTTGTTTG+CGG 0.482675 6_4:-19674078 Msa0980990:CDS
AGACACAGTACCGGTTTCCT+TGG 0.485208 6_4:+19675945 None:intergenic
ACTCAGACTAATTTGCATAT+GGG 0.487815 6_4:-19675532 Msa0980990:CDS
GAAACTTGAGCAAGAAACAT+AGG 0.490263 6_4:+19675973 None:intergenic
GAAGAGTCCTGCTTCGGTGA+CGG 0.491134 6_4:-19675191 Msa0980990:CDS
AACAATCAAAGAGTTATGCT+TGG 0.495151 6_4:+19675492 None:intergenic
GAAGTTTAGTGTAGAAGTAG+AGG 0.497013 6_4:-19673871 Msa0980990:three_prime_UTR
ATTCCATATCTAGCGACAGC+TGG 0.500350 6_4:+19675769 None:intergenic
CGTACTCTCGAATACTTCCC+TGG 0.501179 6_4:-19675079 Msa0980990:CDS
TTGTTGATTCGGATAATTGG+CGG 0.501457 6_4:-19675621 Msa0980990:CDS
GTGGATCTAAACACTTCATC+AGG 0.509692 6_4:+19675356 None:intergenic
GTTTCTGAGACCAAGGAAAC+CGG 0.510693 6_4:-19675955 Msa0980990:CDS
GATAAAATGGCATTCATCAA+AGG 0.513749 6_4:-19675277 Msa0980990:CDS
TCCCTGGATAGTTTGAGTTG+CGG 0.514567 6_4:-19675667 Msa0980990:CDS
CGAACAAGTAATTGAGGAGA+TGG 0.515659 6_4:-19675314 Msa0980990:CDS
TATTCTAAATATGACCAGAA+TGG 0.516967 6_4:-19674297 Msa0980990:CDS
TGATTCGCTCACGAGTTCCC+TGG 0.517408 6_4:-19675683 Msa0980990:CDS
CTCGACTGCTCATACAATCT+GGG 0.517735 6_4:-19675459 Msa0980990:CDS
CAATCGGAACTCTCATCGGT+TGG 0.520360 6_4:+19674387 None:intergenic
CTCTTCAACAGGCTTGCTCA+AGG 0.521152 6_4:-19675798 Msa0980990:CDS
GCTGTATGAAGTTCTTGCTA+GGG 0.522921 6_4:-19675905 Msa0980990:CDS
CTTCCCTGGATATGGATCCC+TGG 0.525024 6_4:-19675065 Msa0980990:CDS
AGGCATGAAGAGTCCTGCTT+CGG 0.525449 6_4:-19675197 Msa0980990:CDS
TCCGCAAACAAATCTGCGCT+TGG 0.528581 6_4:+19674077 None:intergenic
AGACTCTTGAACCTTCGAAT+CGG 0.530274 6_4:+19674354 None:intergenic
TCAAGTGCAGAGGAGAGAAA+TGG 0.531256 6_4:-19674917 Msa0980990:CDS
AACTTTCTTAGCTGTTTGCA+AGG 0.533180 6_4:+19675240 None:intergenic
TATTCGAGAGTACGTGACTC+TGG 0.535424 6_4:+19675088 None:intergenic
AATGAATAAACACATTATGT+AGG 0.536719 6_4:+19673979 None:intergenic
GAACATCTTCAGAAGGCCTC+TGG 0.540199 6_4:+19674154 None:intergenic
GGAGATAGTTCTTCAGGTGA+TGG 0.540688 6_4:-19675136 Msa0980990:CDS
TGGAATTGATCCAACGATGC+CGG 0.540945 6_4:-19675752 Msa0980990:CDS
GTGAATCAGATGTGGGAGTA+CGG 0.541970 6_4:+19675110 None:intergenic
GCAAATCACGACAAGTATGA+TGG 0.543100 6_4:-19674270 Msa0980990:CDS
TGCGGTGACGGACAGTATCA+AGG 0.545775 6_4:-19674228 Msa0980990:CDS
AGGTTCAAGAGTCTATCATC+AGG 0.546445 6_4:-19674345 Msa0980990:CDS
CTCTGGTTATCAGCATCAGC+AGG 0.547461 6_4:+19674171 None:intergenic
ACGGATCACACGTTTCTGAA+TGG 0.547563 6_4:-19674893 Msa0980990:CDS
AGAACAATCGGAACTCTCAT+CGG 0.550480 6_4:+19674383 None:intergenic
AAGTATGATGGCAAAGAGTA+CGG 0.552367 6_4:-19674258 Msa0980990:CDS
TTTGGAGCCTTGAAAATGGA+GGG 0.552771 6_4:-19674970 Msa0980990:CDS
TACGGAAGCTCATGCGGTGA+CGG 0.553418 6_4:-19674240 Msa0980990:CDS
AGACTTTAGCTTCGAGTGCA+GGG 0.553658 6_4:-19675828 Msa0980990:CDS
CTTGAGCAAGCCTGTTGAAG+AGG 0.571327 6_4:+19675799 None:intergenic
CTTTGGAGCCTTGAAAATGG+AGG 0.580803 6_4:-19674971 Msa0980990:CDS
TTCCTTGTCTAGGACTTCTG+GGG 0.581179 6_4:+19674840 None:intergenic
GGTTTAGTTCAACAATGGGA+AGG 0.582247 6_4:-19676113 None:intergenic
TGCAGAGGAGAGAAATGGTA+CGG 0.589683 6_4:-19674912 Msa0980990:CDS
TCTTCAACAGGCTTGCTCAA+GGG 0.591764 6_4:-19675797 Msa0980990:CDS
TCAAGCTCTCTTCGTAACAC+AGG 0.592102 6_4:+19676081 None:intergenic
TGATGAAGTGTTTAGATCCA+CGG 0.595367 6_4:-19675354 Msa0980990:CDS
TCATATTTAGAATAAGCTGA+TGG 0.595918 6_4:+19674306 None:intergenic
TTGAGCAAGCCTGTTGAAGA+GGG 0.597260 6_4:+19675800 None:intergenic
CTTTCACGAACATCTTCAGA+AGG 0.603973 6_4:+19674147 None:intergenic
GAATTCTCCAGACACAGTAC+CGG 0.604514 6_4:+19675936 None:intergenic
AGGGGTTGATGTGTCTCTCA+AGG 0.604823 6_4:-19674951 Msa0980990:CDS
GTCAGTGGAGAGTCTATGGA+TGG 0.608577 6_4:-19675421 Msa0980990:CDS
GTTGATGTGTCTCTCAAGGA+CGG 0.617613 6_4:-19674947 Msa0980990:CDS
ACCGCAACTCAAACTATCCA+GGG 0.619300 6_4:+19675666 None:intergenic
GACTCTGGTGAATCAGATGT+GGG 0.622726 6_4:+19675103 None:intergenic
CTCGTGAGCGAATCAGATAG+AGG 0.628566 6_4:+19675691 None:intergenic
GGAGGTCGAACAAGTAATTG+AGG 0.633070 6_4:-19675320 Msa0980990:CDS
GGTTATCAGCATCAGCAGGA+AGG 0.633093 6_4:+19674175 None:intergenic
AAAGAGTACGGAAGCTCATG+CGG 0.633405 6_4:-19674246 Msa0980990:CDS
AGCATCAGCAGGAAGGTCGT+CGG 0.633798 6_4:+19674182 None:intergenic
CGGTCTGTTCTCAAGTGCAG+AGG 0.639180 6_4:-19674927 Msa0980990:CDS
TTGGAGCCTTGAAAATGGAG+GGG 0.639404 6_4:-19674969 Msa0980990:CDS
GATCACACGTTTCTGAATGG+TGG 0.639737 6_4:-19674890 Msa0980990:CDS
GTTGAGCCAAATTAAAGGTG+TGG 0.646088 6_4:+19674029 None:intergenic
CAGCCAGGGATCCATATCCA+GGG 0.652030 6_4:+19675062 None:intergenic
TGACTCTGGTGAATCAGATG+TGG 0.654691 6_4:+19675102 None:intergenic
CTGCTGATGCTGATAACCAG+AGG 0.662905 6_4:-19674170 Msa0980990:CDS
AAACACATTATGTAGGAACA+AGG 0.668644 6_4:+19673986 None:intergenic
ATAATTTGAACTATTCACGA+AGG 0.671458 6_4:-19675009 Msa0980990:CDS
ACTTACGAGAGGACTTGTGT+TGG 0.671817 6_4:+19674805 None:intergenic
CGAAATAGGAGACTCAGCCA+GGG 0.678382 6_4:+19675048 None:intergenic
ATCCCCAGAAGTCCTAGACA+AGG 0.678682 6_4:-19674842 Msa0980990:CDS
TGGATGGTAATTCTCAGAAG+CGG 0.678871 6_4:-19675405 Msa0980990:CDS
CGGTTGGATCTTGAAGAGAG+CGG 0.686517 6_4:+19674403 None:intergenic
AATTGATCCAACGATGCCGG+AGG 0.688811 6_4:-19675749 Msa0980990:CDS
GGTTTGCCAGAATGTTGCTG+TGG 0.695386 6_4:-19675572 Msa0980990:CDS
ACCTCCGAGAAAATACTCCG+TGG 0.719237 6_4:+19675337 None:intergenic
GAATGGTGGAGATTTAACTG+AGG 0.727777 6_4:-19674876 Msa0980990:CDS
TGAAAATCTAGACAAAGACG+CGG 0.754630 6_4:-19676061 Msa0980990:CDS
GGTGACGGACAGTATCAAGG+AGG 0.795781 6_4:-19674225 Msa0980990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATAGGTAAAAATA+TGG - chr6_4:19676098-19676117 Msa0980990:CDS 10.0%
!!! ATTTAAAATAGGTAAAAATA+TGG - chr6_4:19676098-19676117 Msa0980990:CDS 10.0%
!! ATAATTATTCCATGAATTAA+TGG + chr6_4:19675175-19675194 None:intergenic 15.0%
!! ATAATTATTCCATGAATTAA+TGG + chr6_4:19675175-19675194 None:intergenic 15.0%
!! AAAATCTTATGTGAAAGATT+TGG - chr6_4:19673817-19673836 Msa0980990:three_prime_UTR 20.0%
!! AAAAAAGAACCATTAATTCA+TGG - chr6_4:19675163-19675182 Msa0980990:CDS 20.0%
!! ATTATGCATTATATCACTTT+AGG - chr6_4:19675190-19675209 Msa0980990:CDS 20.0%
!! TCAAGTTTCAATAAACATAA+AGG + chr6_4:19675305-19675324 None:intergenic 20.0%
!! AATGAATAAACACATTATGT+AGG + chr6_4:19675851-19675870 None:intergenic 20.0%
!!! TGTTCAGCTAAATTTAAAAT+AGG - chr6_4:19676087-19676106 Msa0980990:CDS 20.0%
!! AAAATCTTATGTGAAAGATT+TGG - chr6_4:19673817-19673836 Msa0980990:three_prime_UTR 20.0%
!! AAAAAAGAACCATTAATTCA+TGG - chr6_4:19675163-19675182 Msa0980990:CDS 20.0%
!! ATTATGCATTATATCACTTT+AGG - chr6_4:19675190-19675209 Msa0980990:CDS 20.0%
!! TCAAGTTTCAATAAACATAA+AGG + chr6_4:19675305-19675324 None:intergenic 20.0%
!! AATGAATAAACACATTATGT+AGG + chr6_4:19675851-19675870 None:intergenic 20.0%
!!! TGTTCAGCTAAATTTAAAAT+AGG - chr6_4:19676087-19676106 Msa0980990:CDS 20.0%
!! ATGTGAAAGATTTGGATTTT+AGG - chr6_4:19673825-19673844 Msa0980990:three_prime_UTR 25.0%
!! TGTGAAAGATTTGGATTTTA+GGG - chr6_4:19673826-19673845 Msa0980990:three_prime_UTR 25.0%
! TTCTGATGAAATGGTTAATA+GGG - chr6_4:19674234-19674253 Msa0980990:CDS 25.0%
!!! TTTGATGAATGCCATTTTAT+CGG + chr6_4:19674551-19674570 None:intergenic 25.0%
! AAAATCTCTTCCACTAAAAT+TGG + chr6_4:19674665-19674684 None:intergenic 25.0%
!! TTTTAGTGGAAGAGATTTTA+TGG - chr6_4:19674666-19674685 Msa0980990:intron 25.0%
! ATAATTTGAACTATTCACGA+AGG - chr6_4:19674818-19674837 Msa0980990:CDS 25.0%
! AACTCAAATAATGTCGAATA+GGG + chr6_4:19675065-19675084 None:intergenic 25.0%
!! TCATATTTAGAATAAGCTGA+TGG + chr6_4:19675524-19675543 None:intergenic 25.0%
! TATTCTAAATATGACCAGAA+TGG - chr6_4:19675530-19675549 Msa0980990:CDS 25.0%
!! GATTTATGAGTAGAGTTTTA+TGG - chr6_4:19675902-19675921 Msa0980990:CDS 25.0%
! GTTAATTCCAACTAAATGTT+GGG - chr6_4:19675934-19675953 Msa0980990:CDS 25.0%
!! GAAAAATAAAAGCACATTGA+AGG + chr6_4:19675999-19676018 None:intergenic 25.0%
! ATTCATCTAATTCCAACATA+AGG + chr6_4:19676059-19676078 None:intergenic 25.0%
! ATAGGTAAAAATATGGTGAA+TGG - chr6_4:19676105-19676124 Msa0980990:exon 25.0%
!! ATGTGAAAGATTTGGATTTT+AGG - chr6_4:19673825-19673844 Msa0980990:three_prime_UTR 25.0%
!! TGTGAAAGATTTGGATTTTA+GGG - chr6_4:19673826-19673845 Msa0980990:three_prime_UTR 25.0%
! TTCTGATGAAATGGTTAATA+GGG - chr6_4:19674234-19674253 Msa0980990:CDS 25.0%
!!! TTTGATGAATGCCATTTTAT+CGG + chr6_4:19674551-19674570 None:intergenic 25.0%
! AAAATCTCTTCCACTAAAAT+TGG + chr6_4:19674665-19674684 None:intergenic 25.0%
!! TTTTAGTGGAAGAGATTTTA+TGG - chr6_4:19674666-19674685 Msa0980990:intron 25.0%
! ATAATTTGAACTATTCACGA+AGG - chr6_4:19674818-19674837 Msa0980990:CDS 25.0%
! AACTCAAATAATGTCGAATA+GGG + chr6_4:19675065-19675084 None:intergenic 25.0%
!! TCATATTTAGAATAAGCTGA+TGG + chr6_4:19675524-19675543 None:intergenic 25.0%
! TATTCTAAATATGACCAGAA+TGG - chr6_4:19675530-19675549 Msa0980990:CDS 25.0%
!! GATTTATGAGTAGAGTTTTA+TGG - chr6_4:19675902-19675921 Msa0980990:CDS 25.0%
! GTTAATTCCAACTAAATGTT+GGG - chr6_4:19675934-19675953 Msa0980990:CDS 25.0%
!! GAAAAATAAAAGCACATTGA+AGG + chr6_4:19675999-19676018 None:intergenic 25.0%
! ATTCATCTAATTCCAACATA+AGG + chr6_4:19676059-19676078 None:intergenic 25.0%
! ATAGGTAAAAATATGGTGAA+TGG - chr6_4:19676105-19676124 Msa0980990:exon 25.0%
ATATGTTTCTTCTTATCCTC+CGG + chr6_4:19674097-19674116 None:intergenic 30.0%
CTTCTGATGAAATGGTTAAT+AGG - chr6_4:19674233-19674252 Msa0980990:CDS 30.0%
! TACTCAGACTAATTTGCATA+TGG - chr6_4:19674294-19674313 Msa0980990:CDS 30.0%
! ACTCAGACTAATTTGCATAT+GGG - chr6_4:19674295-19674314 Msa0980990:CDS 30.0%
AACAATCAAAGAGTTATGCT+TGG + chr6_4:19674338-19674357 None:intergenic 30.0%
GATAAAATGGCATTCATCAA+AGG - chr6_4:19674550-19674569 Msa0980990:intron 30.0%
ATAGATTGACATGTCGAAAT+AGG + chr6_4:19674796-19674815 None:intergenic 30.0%
CAACTCAAATAATGTCGAAT+AGG + chr6_4:19675066-19675085 None:intergenic 30.0%
!! AATCGGTTTTTCAGAACAAT+CGG + chr6_4:19675459-19675478 None:intergenic 30.0%
TATCATCAGGCAATATTGAT+TGG - chr6_4:19675495-19675514 Msa0980990:CDS 30.0%
AAACACATTATGTAGGAACA+AGG + chr6_4:19675844-19675863 None:intergenic 30.0%
!! TAGAGTTTTATGGAAGTAGT+TGG - chr6_4:19675912-19675931 Msa0980990:CDS 30.0%
GGTTAATTCCAACTAAATGT+TGG - chr6_4:19675933-19675952 Msa0980990:CDS 30.0%
TAAACTTCCCAACATTTAGT+TGG + chr6_4:19675944-19675963 None:intergenic 30.0%
ATATGTTTCTTCTTATCCTC+CGG + chr6_4:19674097-19674116 None:intergenic 30.0%
CTTCTGATGAAATGGTTAAT+AGG - chr6_4:19674233-19674252 Msa0980990:CDS 30.0%
! TACTCAGACTAATTTGCATA+TGG - chr6_4:19674294-19674313 Msa0980990:CDS 30.0%
! ACTCAGACTAATTTGCATAT+GGG - chr6_4:19674295-19674314 Msa0980990:CDS 30.0%
AACAATCAAAGAGTTATGCT+TGG + chr6_4:19674338-19674357 None:intergenic 30.0%
GATAAAATGGCATTCATCAA+AGG - chr6_4:19674550-19674569 Msa0980990:intron 30.0%
ATAGATTGACATGTCGAAAT+AGG + chr6_4:19674796-19674815 None:intergenic 30.0%
CAACTCAAATAATGTCGAAT+AGG + chr6_4:19675066-19675085 None:intergenic 30.0%
!! AATCGGTTTTTCAGAACAAT+CGG + chr6_4:19675459-19675478 None:intergenic 30.0%
TATCATCAGGCAATATTGAT+TGG - chr6_4:19675495-19675514 Msa0980990:CDS 30.0%
AAACACATTATGTAGGAACA+AGG + chr6_4:19675844-19675863 None:intergenic 30.0%
!! TAGAGTTTTATGGAAGTAGT+TGG - chr6_4:19675912-19675931 Msa0980990:CDS 30.0%
GGTTAATTCCAACTAAATGT+TGG - chr6_4:19675933-19675952 Msa0980990:CDS 30.0%
TAAACTTCCCAACATTTAGT+TGG + chr6_4:19675944-19675963 None:intergenic 30.0%
TGAAAATCTAGACAAAGACG+CGG - chr6_4:19673766-19673785 Msa0980990:three_prime_UTR 35.0%
GAAACTTGAGCAAGAAACAT+AGG + chr6_4:19673857-19673876 None:intergenic 35.0%
TGCATGATACTGTCAATCAT+TGG + chr6_4:19673968-19673987 None:intergenic 35.0%
CGAAGCTAAAGTCTGAATTA+TGG + chr6_4:19673993-19674012 None:intergenic 35.0%
!! CTCTTGTTGATTCGGATAAT+TGG - chr6_4:19674203-19674222 Msa0980990:CDS 35.0%
!! TTGTTGATTCGGATAATTGG+CGG - chr6_4:19674206-19674225 Msa0980990:CDS 35.0%
! GACTAATTTGCATATGGGTT+TGG - chr6_4:19674300-19674319 Msa0980990:CDS 35.0%
! TGATGAAGTGTTTAGATCCA+CGG - chr6_4:19674473-19674492 Msa0980990:intron 35.0%
AACTTTCTTAGCTGTTTGCA+AGG + chr6_4:19674590-19674609 None:intergenic 35.0%
! AGTGGAAGAGATTTTATGGA+TGG - chr6_4:19674670-19674689 Msa0980990:intron 35.0%
! ATATTTGAGACACTTACGAG+AGG + chr6_4:19675036-19675055 None:intergenic 35.0%
! AGATTTTTGACACTCCAAAG+AGG - chr6_4:19675396-19675415 Msa0980990:CDS 35.0%
AAGTATGATGGCAAAGAGTA+CGG - chr6_4:19675569-19675588 Msa0980990:CDS 35.0%
ATCTTTCGTCATTCTTGCAA+TGG - chr6_4:19675775-19675794 Msa0980990:CDS 35.0%
TGACTGTTGAGCCAAATTAA+AGG + chr6_4:19675806-19675825 None:intergenic 35.0%
GAAGTTTAGTGTAGAAGTAG+AGG - chr6_4:19675956-19675975 Msa0980990:CDS 35.0%
GACTGAATTCTACCTTATGT+TGG - chr6_4:19676044-19676063 Msa0980990:CDS 35.0%
TGAAAATCTAGACAAAGACG+CGG - chr6_4:19673766-19673785 Msa0980990:three_prime_UTR 35.0%
GAAACTTGAGCAAGAAACAT+AGG + chr6_4:19673857-19673876 None:intergenic 35.0%
TGCATGATACTGTCAATCAT+TGG + chr6_4:19673968-19673987 None:intergenic 35.0%
CGAAGCTAAAGTCTGAATTA+TGG + chr6_4:19673993-19674012 None:intergenic 35.0%
!! CTCTTGTTGATTCGGATAAT+TGG - chr6_4:19674203-19674222 Msa0980990:CDS 35.0%
!! TTGTTGATTCGGATAATTGG+CGG - chr6_4:19674206-19674225 Msa0980990:CDS 35.0%
! GACTAATTTGCATATGGGTT+TGG - chr6_4:19674300-19674319 Msa0980990:CDS 35.0%
! TGATGAAGTGTTTAGATCCA+CGG - chr6_4:19674473-19674492 Msa0980990:intron 35.0%
AACTTTCTTAGCTGTTTGCA+AGG + chr6_4:19674590-19674609 None:intergenic 35.0%
! AGTGGAAGAGATTTTATGGA+TGG - chr6_4:19674670-19674689 Msa0980990:intron 35.0%
! ATATTTGAGACACTTACGAG+AGG + chr6_4:19675036-19675055 None:intergenic 35.0%
! AGATTTTTGACACTCCAAAG+AGG - chr6_4:19675396-19675415 Msa0980990:CDS 35.0%
AAGTATGATGGCAAAGAGTA+CGG - chr6_4:19675569-19675588 Msa0980990:CDS 35.0%
ATCTTTCGTCATTCTTGCAA+TGG - chr6_4:19675775-19675794 Msa0980990:CDS 35.0%
TGACTGTTGAGCCAAATTAA+AGG + chr6_4:19675806-19675825 None:intergenic 35.0%
GAAGTTTAGTGTAGAAGTAG+AGG - chr6_4:19675956-19675975 Msa0980990:CDS 35.0%
GACTGAATTCTACCTTATGT+TGG - chr6_4:19676044-19676063 Msa0980990:CDS 35.0%
GCTGTATGAAGTTCTTGCTA+GGG - chr6_4:19673922-19673941 Msa0980990:three_prime_UTR 40.0%
! CTTGAAGGCTCTTGTTGATT+CGG - chr6_4:19674195-19674214 Msa0980990:CDS 40.0%
AAATGTCAGTGGAGAGTCTA+TGG - chr6_4:19674402-19674421 Msa0980990:CDS 40.0%
TGGATGGTAATTCTCAGAAG+CGG - chr6_4:19674422-19674441 Msa0980990:CDS 40.0%
GTGGATCTAAACACTTCATC+AGG + chr6_4:19674474-19674493 None:intergenic 40.0%
!! AGATCCACGGAGTATTTTCT+CGG - chr6_4:19674486-19674505 Msa0980990:intron 40.0%
CGAACAAGTAATTGAGGAGA+TGG - chr6_4:19674513-19674532 Msa0980990:intron 40.0%
!!! TGAATGCCATTTTATCGGAC+TGG + chr6_4:19674546-19674565 None:intergenic 40.0%
GCGAACGACAAAAAATTGAG+AGG - chr6_4:19674610-19674629 Msa0980990:intron 40.0%
ATGGATGGAGATAGTTCTTC+AGG - chr6_4:19674685-19674704 Msa0980990:intron 40.0%
!! ATTCACGAAGGAGTGTCAAT+AGG - chr6_4:19674830-19674849 Msa0980990:CDS 40.0%
!! AAGCTTTGGAGCCTTGAAAA+TGG - chr6_4:19674853-19674872 Msa0980990:CDS 40.0%
! TTTGGAGCCTTGAAAATGGA+GGG - chr6_4:19674857-19674876 Msa0980990:CDS 40.0%
! GAATGGTGGAGATTTAACTG+AGG - chr6_4:19674951-19674970 Msa0980990:CDS 40.0%
! ATTCCTTGTCTAGGACTTCT+GGG + chr6_4:19674991-19675010 None:intergenic 40.0%
! TATTCCTTGTCTAGGACTTC+TGG + chr6_4:19674992-19675011 None:intergenic 40.0%
CTTCTGGATATTCCTTGTCT+AGG + chr6_4:19675000-19675019 None:intergenic 40.0%
AGAACAATCGGAACTCTCAT+CGG + chr6_4:19675447-19675466 None:intergenic 40.0%
!! GTTCTGAAAAACCGATTCGA+AGG - chr6_4:19675462-19675481 Msa0980990:CDS 40.0%
AGACTCTTGAACCTTCGAAT+CGG + chr6_4:19675476-19675495 None:intergenic 40.0%
AGGTTCAAGAGTCTATCATC+AGG - chr6_4:19675482-19675501 Msa0980990:CDS 40.0%
!! CGTGATTTGCTAAACCATTC+TGG + chr6_4:19675547-19675566 None:intergenic 40.0%
GCAAATCACGACAAGTATGA+TGG - chr6_4:19675557-19675576 Msa0980990:CDS 40.0%
CTTTCACGAACATCTTCAGA+AGG + chr6_4:19675683-19675702 None:intergenic 40.0%
! TTTTCAGCGCGAACAATTTG+TGG + chr6_4:19675716-19675735 None:intergenic 40.0%
CAATGGCCACACCTTTAATT+TGG - chr6_4:19675792-19675811 Msa0980990:CDS 40.0%
GTTGAGCCAAATTAAAGGTG+TGG + chr6_4:19675801-19675820 None:intergenic 40.0%
GCTGTATGAAGTTCTTGCTA+GGG - chr6_4:19673922-19673941 Msa0980990:three_prime_UTR 40.0%
! CTTGAAGGCTCTTGTTGATT+CGG - chr6_4:19674195-19674214 Msa0980990:CDS 40.0%
AAATGTCAGTGGAGAGTCTA+TGG - chr6_4:19674402-19674421 Msa0980990:CDS 40.0%
TGGATGGTAATTCTCAGAAG+CGG - chr6_4:19674422-19674441 Msa0980990:CDS 40.0%
GTGGATCTAAACACTTCATC+AGG + chr6_4:19674474-19674493 None:intergenic 40.0%
!! AGATCCACGGAGTATTTTCT+CGG - chr6_4:19674486-19674505 Msa0980990:intron 40.0%
CGAACAAGTAATTGAGGAGA+TGG - chr6_4:19674513-19674532 Msa0980990:intron 40.0%
!!! TGAATGCCATTTTATCGGAC+TGG + chr6_4:19674546-19674565 None:intergenic 40.0%
GCGAACGACAAAAAATTGAG+AGG - chr6_4:19674610-19674629 Msa0980990:intron 40.0%
ATGGATGGAGATAGTTCTTC+AGG - chr6_4:19674685-19674704 Msa0980990:intron 40.0%
!! ATTCACGAAGGAGTGTCAAT+AGG - chr6_4:19674830-19674849 Msa0980990:CDS 40.0%
!! AAGCTTTGGAGCCTTGAAAA+TGG - chr6_4:19674853-19674872 Msa0980990:CDS 40.0%
! TTTGGAGCCTTGAAAATGGA+GGG - chr6_4:19674857-19674876 Msa0980990:CDS 40.0%
! GAATGGTGGAGATTTAACTG+AGG - chr6_4:19674951-19674970 Msa0980990:CDS 40.0%
! ATTCCTTGTCTAGGACTTCT+GGG + chr6_4:19674991-19675010 None:intergenic 40.0%
! TATTCCTTGTCTAGGACTTC+TGG + chr6_4:19674992-19675011 None:intergenic 40.0%
CTTCTGGATATTCCTTGTCT+AGG + chr6_4:19675000-19675019 None:intergenic 40.0%
AGAACAATCGGAACTCTCAT+CGG + chr6_4:19675447-19675466 None:intergenic 40.0%
!! GTTCTGAAAAACCGATTCGA+AGG - chr6_4:19675462-19675481 Msa0980990:CDS 40.0%
AGACTCTTGAACCTTCGAAT+CGG + chr6_4:19675476-19675495 None:intergenic 40.0%
AGGTTCAAGAGTCTATCATC+AGG - chr6_4:19675482-19675501 Msa0980990:CDS 40.0%
!! CGTGATTTGCTAAACCATTC+TGG + chr6_4:19675547-19675566 None:intergenic 40.0%
GCAAATCACGACAAGTATGA+TGG - chr6_4:19675557-19675576 Msa0980990:CDS 40.0%
CTTTCACGAACATCTTCAGA+AGG + chr6_4:19675683-19675702 None:intergenic 40.0%
! TTTTCAGCGCGAACAATTTG+TGG + chr6_4:19675716-19675735 None:intergenic 40.0%
CAATGGCCACACCTTTAATT+TGG - chr6_4:19675792-19675811 Msa0980990:CDS 40.0%
GTTGAGCCAAATTAAAGGTG+TGG + chr6_4:19675801-19675820 None:intergenic 40.0%
TCAAGCTCTCTTCGTAACAC+AGG + chr6_4:19673749-19673768 None:intergenic 45.0%
!! TGCTCAAGTTTCTGAGACCA+AGG - chr6_4:19673865-19673884 Msa0980990:three_prime_UTR 45.0%
!! GTTTCTGAGACCAAGGAAAC+CGG - chr6_4:19673872-19673891 Msa0980990:three_prime_UTR 45.0%
GAATTCTCCAGACACAGTAC+CGG + chr6_4:19673894-19673913 None:intergenic 45.0%
CGCTGTATGAAGTTCTTGCT+AGG - chr6_4:19673921-19673940 Msa0980990:three_prime_UTR 45.0%
GAAGTTCTTGCTAGGGTTCA+TGG - chr6_4:19673929-19673948 Msa0980990:three_prime_UTR 45.0%
! AGACTTTAGCTTCGAGTGCA+GGG - chr6_4:19673999-19674018 Msa0980990:CDS 45.0%
TTGAGCAAGCCTGTTGAAGA+GGG + chr6_4:19674030-19674049 None:intergenic 45.0%
! TCTTCAACAGGCTTGCTCAA+GGG - chr6_4:19674030-19674049 Msa0980990:CDS 45.0%
ATTCCATATCTAGCGACAGC+TGG + chr6_4:19674061-19674080 None:intergenic 45.0%
TGGAATTGATCCAACGATGC+CGG - chr6_4:19674075-19674094 Msa0980990:CDS 45.0%
!! TCCCTGGATAGTTTGAGTTG+CGG - chr6_4:19674160-19674179 Msa0980990:CDS 45.0%
ACCGCAACTCAAACTATCCA+GGG + chr6_4:19674164-19674183 None:intergenic 45.0%
! GCGGTTTGCTTCTGATGAAA+TGG - chr6_4:19674225-19674244 Msa0980990:CDS 45.0%
AATGTTGCTGTGGCGTTAGA+AGG - chr6_4:19674265-19674284 Msa0980990:CDS 45.0%
CTCGACTGCTCATACAATCT+GGG - chr6_4:19674368-19674387 Msa0980990:CDS 45.0%
CTGCGCATGTTAAATGTCAG+TGG - chr6_4:19674391-19674410 Msa0980990:CDS 45.0%
GGAGGTCGAACAAGTAATTG+AGG - chr6_4:19674507-19674526 Msa0980990:intron 45.0%
!!! GTGACGGGTTCCAATTTTAG+TGG - chr6_4:19674652-19674671 Msa0980990:intron 45.0%
GGAGATAGTTCTTCAGGTGA+TGG - chr6_4:19674691-19674710 Msa0980990:intron 45.0%
GTGAATCAGATGTGGGAGTA+CGG + chr6_4:19674720-19674739 None:intergenic 45.0%
GACTCTGGTGAATCAGATGT+GGG + chr6_4:19674727-19674746 None:intergenic 45.0%
TGACTCTGGTGAATCAGATG+TGG + chr6_4:19674728-19674747 None:intergenic 45.0%
! TATTCGAGAGTACGTGACTC+TGG + chr6_4:19674742-19674761 None:intergenic 45.0%
CTCGAATACTTCCCTGGATA+TGG - chr6_4:19674754-19674773 Msa0980990:intron 45.0%
! GGAGTGTCAATAGGAAGCTT+TGG - chr6_4:19674839-19674858 Msa0980990:CDS 45.0%
!! CTTTGGAGCCTTGAAAATGG+AGG - chr6_4:19674856-19674875 Msa0980990:CDS 45.0%
TTGGAGCCTTGAAAATGGAG+GGG - chr6_4:19674858-19674877 Msa0980990:CDS 45.0%
! CATCAACCCCTCCATTTTCA+AGG + chr6_4:19674867-19674886 None:intergenic 45.0%
GTTGATGTGTCTCTCAAGGA+CGG - chr6_4:19674880-19674899 Msa0980990:CDS 45.0%
TCAAGTGCAGAGGAGAGAAA+TGG - chr6_4:19674910-19674929 Msa0980990:CDS 45.0%
TGCAGAGGAGAGAAATGGTA+CGG - chr6_4:19674915-19674934 Msa0980990:CDS 45.0%
ACGGATCACACGTTTCTGAA+TGG - chr6_4:19674934-19674953 Msa0980990:CDS 45.0%
GATCACACGTTTCTGAATGG+TGG - chr6_4:19674937-19674956 Msa0980990:CDS 45.0%
! TTCCTTGTCTAGGACTTCTG+GGG + chr6_4:19674990-19675009 None:intergenic 45.0%
! AGGACTTGTGTTGGTACTTC+TGG + chr6_4:19675016-19675035 None:intergenic 45.0%
ACTTACGAGAGGACTTGTGT+TGG + chr6_4:19675025-19675044 None:intergenic 45.0%
GTGATCTCTGAGCACATGAA+AGG + chr6_4:19675349-19675368 None:intergenic 45.0%
! AAAGAGTACGGAAGCTCATG+CGG - chr6_4:19675581-19675600 Msa0980990:CDS 45.0%
! ACCAAGCGCAGATTTGTTTG+CGG - chr6_4:19675749-19675768 Msa0980990:CDS 45.0%
TCAAGCTCTCTTCGTAACAC+AGG + chr6_4:19673749-19673768 None:intergenic 45.0%
!! TGCTCAAGTTTCTGAGACCA+AGG - chr6_4:19673865-19673884 Msa0980990:three_prime_UTR 45.0%
!! GTTTCTGAGACCAAGGAAAC+CGG - chr6_4:19673872-19673891 Msa0980990:three_prime_UTR 45.0%
GAATTCTCCAGACACAGTAC+CGG + chr6_4:19673894-19673913 None:intergenic 45.0%
CGCTGTATGAAGTTCTTGCT+AGG - chr6_4:19673921-19673940 Msa0980990:three_prime_UTR 45.0%
GAAGTTCTTGCTAGGGTTCA+TGG - chr6_4:19673929-19673948 Msa0980990:three_prime_UTR 45.0%
! AGACTTTAGCTTCGAGTGCA+GGG - chr6_4:19673999-19674018 Msa0980990:CDS 45.0%
TTGAGCAAGCCTGTTGAAGA+GGG + chr6_4:19674030-19674049 None:intergenic 45.0%
! TCTTCAACAGGCTTGCTCAA+GGG - chr6_4:19674030-19674049 Msa0980990:CDS 45.0%
ATTCCATATCTAGCGACAGC+TGG + chr6_4:19674061-19674080 None:intergenic 45.0%
TGGAATTGATCCAACGATGC+CGG - chr6_4:19674075-19674094 Msa0980990:CDS 45.0%
!! TCCCTGGATAGTTTGAGTTG+CGG - chr6_4:19674160-19674179 Msa0980990:CDS 45.0%
ACCGCAACTCAAACTATCCA+GGG + chr6_4:19674164-19674183 None:intergenic 45.0%
! GCGGTTTGCTTCTGATGAAA+TGG - chr6_4:19674225-19674244 Msa0980990:CDS 45.0%
AATGTTGCTGTGGCGTTAGA+AGG - chr6_4:19674265-19674284 Msa0980990:CDS 45.0%
CTCGACTGCTCATACAATCT+GGG - chr6_4:19674368-19674387 Msa0980990:CDS 45.0%
CTGCGCATGTTAAATGTCAG+TGG - chr6_4:19674391-19674410 Msa0980990:CDS 45.0%
GGAGGTCGAACAAGTAATTG+AGG - chr6_4:19674507-19674526 Msa0980990:intron 45.0%
!!! GTGACGGGTTCCAATTTTAG+TGG - chr6_4:19674652-19674671 Msa0980990:intron 45.0%
GGAGATAGTTCTTCAGGTGA+TGG - chr6_4:19674691-19674710 Msa0980990:intron 45.0%
GTGAATCAGATGTGGGAGTA+CGG + chr6_4:19674720-19674739 None:intergenic 45.0%
GACTCTGGTGAATCAGATGT+GGG + chr6_4:19674727-19674746 None:intergenic 45.0%
TGACTCTGGTGAATCAGATG+TGG + chr6_4:19674728-19674747 None:intergenic 45.0%
! TATTCGAGAGTACGTGACTC+TGG + chr6_4:19674742-19674761 None:intergenic 45.0%
CTCGAATACTTCCCTGGATA+TGG - chr6_4:19674754-19674773 Msa0980990:intron 45.0%
! GGAGTGTCAATAGGAAGCTT+TGG - chr6_4:19674839-19674858 Msa0980990:CDS 45.0%
!! CTTTGGAGCCTTGAAAATGG+AGG - chr6_4:19674856-19674875 Msa0980990:CDS 45.0%
TTGGAGCCTTGAAAATGGAG+GGG - chr6_4:19674858-19674877 Msa0980990:CDS 45.0%
! CATCAACCCCTCCATTTTCA+AGG + chr6_4:19674867-19674886 None:intergenic 45.0%
GTTGATGTGTCTCTCAAGGA+CGG - chr6_4:19674880-19674899 Msa0980990:CDS 45.0%
TCAAGTGCAGAGGAGAGAAA+TGG - chr6_4:19674910-19674929 Msa0980990:CDS 45.0%
TGCAGAGGAGAGAAATGGTA+CGG - chr6_4:19674915-19674934 Msa0980990:CDS 45.0%
ACGGATCACACGTTTCTGAA+TGG - chr6_4:19674934-19674953 Msa0980990:CDS 45.0%
GATCACACGTTTCTGAATGG+TGG - chr6_4:19674937-19674956 Msa0980990:CDS 45.0%
! TTCCTTGTCTAGGACTTCTG+GGG + chr6_4:19674990-19675009 None:intergenic 45.0%
! AGGACTTGTGTTGGTACTTC+TGG + chr6_4:19675016-19675035 None:intergenic 45.0%
ACTTACGAGAGGACTTGTGT+TGG + chr6_4:19675025-19675044 None:intergenic 45.0%
GTGATCTCTGAGCACATGAA+AGG + chr6_4:19675349-19675368 None:intergenic 45.0%
! AAAGAGTACGGAAGCTCATG+CGG - chr6_4:19675581-19675600 Msa0980990:CDS 45.0%
! ACCAAGCGCAGATTTGTTTG+CGG - chr6_4:19675749-19675768 Msa0980990:CDS 45.0%
!! AGACACAGTACCGGTTTCCT+TGG + chr6_4:19673885-19673904 None:intergenic 50.0%
AAGGAAACCGGTACTGTGTC+TGG - chr6_4:19673884-19673903 Msa0980990:three_prime_UTR 50.0%
! CAGACTTTAGCTTCGAGTGC+AGG - chr6_4:19673998-19674017 Msa0980990:CDS 50.0%
CTTGAGCAAGCCTGTTGAAG+AGG + chr6_4:19674031-19674050 None:intergenic 50.0%
! CTCTTCAACAGGCTTGCTCA+AGG - chr6_4:19674029-19674048 Msa0980990:CDS 50.0%
GTTCCAGCTGTCGCTAGATA+TGG - chr6_4:19674055-19674074 Msa0980990:CDS 50.0%
AATTGATCCAACGATGCCGG+AGG - chr6_4:19674078-19674097 Msa0980990:CDS 50.0%
TTCTTATCCTCCGGCATCGT+TGG + chr6_4:19674088-19674107 None:intergenic 50.0%
CTCGTGAGCGAATCAGATAG+AGG + chr6_4:19674139-19674158 None:intergenic 50.0%
CACCGCAACTCAAACTATCC+AGG + chr6_4:19674165-19674184 None:intergenic 50.0%
GGTTTGCCAGAATGTTGCTG+TGG - chr6_4:19674255-19674274 Msa0980990:CDS 50.0%
CTAACGCCACAGCAACATTC+TGG + chr6_4:19674264-19674283 None:intergenic 50.0%
GCTCGACTGCTCATACAATC+TGG - chr6_4:19674367-19674386 Msa0980990:CDS 50.0%
GTCAGTGGAGAGTCTATGGA+TGG - chr6_4:19674406-19674425 Msa0980990:CDS 50.0%
GCGGTTCGCAGCTATTCAAA+TGG - chr6_4:19674441-19674460 Msa0980990:CDS 50.0%
!! TCCACGGAGTATTTTCTCGG+AGG - chr6_4:19674489-19674508 Msa0980990:intron 50.0%
ACCTCCGAGAAAATACTCCG+TGG + chr6_4:19674493-19674512 None:intergenic 50.0%
GCAGTGCCAGTCCGATAAAA+TGG - chr6_4:19674537-19674556 Msa0980990:intron 50.0%
AGGCATGAAGAGTCCTGCTT+CGG - chr6_4:19674630-19674649 Msa0980990:intron 50.0%
CGTACTCTCGAATACTTCCC+TGG - chr6_4:19674748-19674767 Msa0980990:intron 50.0%
CGAAATAGGAGACTCAGCCA+GGG + chr6_4:19674782-19674801 None:intergenic 50.0%
TCGAAATAGGAGACTCAGCC+AGG + chr6_4:19674783-19674802 None:intergenic 50.0%
!! AGGGGTTGATGTGTCTCTCA+AGG - chr6_4:19674876-19674895 Msa0980990:CDS 50.0%
ATCCCCAGAAGTCCTAGACA+AGG - chr6_4:19674985-19675004 Msa0980990:CDS 50.0%
CGGTTGGATCTTGAAGAGAG+CGG + chr6_4:19675427-19675446 None:intergenic 50.0%
CAATCGGAACTCTCATCGGT+TGG + chr6_4:19675443-19675462 None:intergenic 50.0%
GGTTATCAGCATCAGCAGGA+AGG + chr6_4:19675655-19675674 None:intergenic 50.0%
CTCTGGTTATCAGCATCAGC+AGG + chr6_4:19675659-19675678 None:intergenic 50.0%
CTGCTGATGCTGATAACCAG+AGG - chr6_4:19675657-19675676 Msa0980990:CDS 50.0%
GAACATCTTCAGAAGGCCTC+TGG + chr6_4:19675676-19675695 None:intergenic 50.0%
!! CTGCGCTTGGTCTTTTGAAG+TGG + chr6_4:19675740-19675759 None:intergenic 50.0%
TCCGCAAACAAATCTGCGCT+TGG + chr6_4:19675753-19675772 None:intergenic 50.0%
!! AGACACAGTACCGGTTTCCT+TGG + chr6_4:19673885-19673904 None:intergenic 50.0%
AAGGAAACCGGTACTGTGTC+TGG - chr6_4:19673884-19673903 Msa0980990:three_prime_UTR 50.0%
! CAGACTTTAGCTTCGAGTGC+AGG - chr6_4:19673998-19674017 Msa0980990:CDS 50.0%
CTTGAGCAAGCCTGTTGAAG+AGG + chr6_4:19674031-19674050 None:intergenic 50.0%
! CTCTTCAACAGGCTTGCTCA+AGG - chr6_4:19674029-19674048 Msa0980990:CDS 50.0%
GTTCCAGCTGTCGCTAGATA+TGG - chr6_4:19674055-19674074 Msa0980990:CDS 50.0%
AATTGATCCAACGATGCCGG+AGG - chr6_4:19674078-19674097 Msa0980990:CDS 50.0%
TTCTTATCCTCCGGCATCGT+TGG + chr6_4:19674088-19674107 None:intergenic 50.0%
CTCGTGAGCGAATCAGATAG+AGG + chr6_4:19674139-19674158 None:intergenic 50.0%
CACCGCAACTCAAACTATCC+AGG + chr6_4:19674165-19674184 None:intergenic 50.0%
GGTTTGCCAGAATGTTGCTG+TGG - chr6_4:19674255-19674274 Msa0980990:CDS 50.0%
CTAACGCCACAGCAACATTC+TGG + chr6_4:19674264-19674283 None:intergenic 50.0%
GCTCGACTGCTCATACAATC+TGG - chr6_4:19674367-19674386 Msa0980990:CDS 50.0%
GTCAGTGGAGAGTCTATGGA+TGG - chr6_4:19674406-19674425 Msa0980990:CDS 50.0%
GCGGTTCGCAGCTATTCAAA+TGG - chr6_4:19674441-19674460 Msa0980990:CDS 50.0%
!! TCCACGGAGTATTTTCTCGG+AGG - chr6_4:19674489-19674508 Msa0980990:intron 50.0%
ACCTCCGAGAAAATACTCCG+TGG + chr6_4:19674493-19674512 None:intergenic 50.0%
GCAGTGCCAGTCCGATAAAA+TGG - chr6_4:19674537-19674556 Msa0980990:intron 50.0%
AGGCATGAAGAGTCCTGCTT+CGG - chr6_4:19674630-19674649 Msa0980990:intron 50.0%
CGTACTCTCGAATACTTCCC+TGG - chr6_4:19674748-19674767 Msa0980990:intron 50.0%
CGAAATAGGAGACTCAGCCA+GGG + chr6_4:19674782-19674801 None:intergenic 50.0%
TCGAAATAGGAGACTCAGCC+AGG + chr6_4:19674783-19674802 None:intergenic 50.0%
!! AGGGGTTGATGTGTCTCTCA+AGG - chr6_4:19674876-19674895 Msa0980990:CDS 50.0%
ATCCCCAGAAGTCCTAGACA+AGG - chr6_4:19674985-19675004 Msa0980990:CDS 50.0%
CGGTTGGATCTTGAAGAGAG+CGG + chr6_4:19675427-19675446 None:intergenic 50.0%
CAATCGGAACTCTCATCGGT+TGG + chr6_4:19675443-19675462 None:intergenic 50.0%
GGTTATCAGCATCAGCAGGA+AGG + chr6_4:19675655-19675674 None:intergenic 50.0%
CTCTGGTTATCAGCATCAGC+AGG + chr6_4:19675659-19675678 None:intergenic 50.0%
CTGCTGATGCTGATAACCAG+AGG - chr6_4:19675657-19675676 Msa0980990:CDS 50.0%
GAACATCTTCAGAAGGCCTC+TGG + chr6_4:19675676-19675695 None:intergenic 50.0%
!! CTGCGCTTGGTCTTTTGAAG+TGG + chr6_4:19675740-19675759 None:intergenic 50.0%
TCCGCAAACAAATCTGCGCT+TGG + chr6_4:19675753-19675772 None:intergenic 50.0%
AGGGTCGTTCCCTCTTCAAC+AGG - chr6_4:19674018-19674037 Msa0980990:CDS 55.0%
TGATTCGCTCACGAGTTCCC+TGG - chr6_4:19674144-19674163 Msa0980990:CDS 55.0%
CGGTGCAGCTCTTTGCTTGA+AGG - chr6_4:19674180-19674199 Msa0980990:CDS 55.0%
GAAGAGTCCTGCTTCGGTGA+CGG - chr6_4:19674636-19674655 Msa0980990:intron 55.0%
AAGAGTCCTGCTTCGGTGAC+GGG - chr6_4:19674637-19674656 Msa0980990:intron 55.0%
CTTCCCTGGATATGGATCCC+TGG - chr6_4:19674762-19674781 Msa0980990:intron 55.0%
CAGCCAGGGATCCATATCCA+GGG + chr6_4:19674768-19674787 None:intergenic 55.0%
TCAGCCAGGGATCCATATCC+AGG + chr6_4:19674769-19674788 None:intergenic 55.0%
CGGTCTGTTCTCAAGTGCAG+AGG - chr6_4:19674900-19674919 Msa0980990:CDS 55.0%
AGAGAGCGGATGAGCCTCTT+TGG + chr6_4:19675413-19675432 None:intergenic 55.0%
TACGGAAGCTCATGCGGTGA+CGG - chr6_4:19675587-19675606 Msa0980990:CDS 55.0%
!! TGCGGTGACGGACAGTATCA+AGG - chr6_4:19675599-19675618 Msa0980990:CDS 55.0%
!! GGTGACGGACAGTATCAAGG+AGG - chr6_4:19675602-19675621 Msa0980990:CDS 55.0%
AGCATCAGCAGGAAGGTCGT+CGG + chr6_4:19675648-19675667 None:intergenic 55.0%
AGGGTCGTTCCCTCTTCAAC+AGG - chr6_4:19674018-19674037 Msa0980990:CDS 55.0%
TGATTCGCTCACGAGTTCCC+TGG - chr6_4:19674144-19674163 Msa0980990:CDS 55.0%
CGGTGCAGCTCTTTGCTTGA+AGG - chr6_4:19674180-19674199 Msa0980990:CDS 55.0%
GAAGAGTCCTGCTTCGGTGA+CGG - chr6_4:19674636-19674655 Msa0980990:intron 55.0%
AAGAGTCCTGCTTCGGTGAC+GGG - chr6_4:19674637-19674656 Msa0980990:intron 55.0%
CTTCCCTGGATATGGATCCC+TGG - chr6_4:19674762-19674781 Msa0980990:intron 55.0%
CAGCCAGGGATCCATATCCA+GGG + chr6_4:19674768-19674787 None:intergenic 55.0%
TCAGCCAGGGATCCATATCC+AGG + chr6_4:19674769-19674788 None:intergenic 55.0%
CGGTCTGTTCTCAAGTGCAG+AGG - chr6_4:19674900-19674919 Msa0980990:CDS 55.0%
AGAGAGCGGATGAGCCTCTT+TGG + chr6_4:19675413-19675432 None:intergenic 55.0%
TACGGAAGCTCATGCGGTGA+CGG - chr6_4:19675587-19675606 Msa0980990:CDS 55.0%
!! TGCGGTGACGGACAGTATCA+AGG - chr6_4:19675599-19675618 Msa0980990:CDS 55.0%
!! GGTGACGGACAGTATCAAGG+AGG - chr6_4:19675602-19675621 Msa0980990:CDS 55.0%
AGCATCAGCAGGAAGGTCGT+CGG + chr6_4:19675648-19675667 None:intergenic 55.0%
TTGGAACCCGTCACCGAAGC+AGG + chr6_4:19674646-19674665 None:intergenic 60.0%
TTGGAACCCGTCACCGAAGC+AGG + chr6_4:19674646-19674665 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19673719 19676130 19673719 ID=Msa0980990;Name=Msa0980990
chr6_4 mRNA 19673719 19676130 19673719 ID=Msa0980990-mRNA-1;Parent=Msa0980990;Name=Msa0980990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=9|1|1|1|1|1|2|274|601
chr6_4 exon 19673719 19674487 19673719 ID=Msa0980990-mRNA-1:exon:6138;Parent=Msa0980990-mRNA-1
chr6_4 exon 19674811 19676130 19674811 ID=Msa0980990-mRNA-1:exon:6137;Parent=Msa0980990-mRNA-1
chr6_4 five_prime_UTR 19676122 19676130 19676122 ID=Msa0980990-mRNA-1:five_prime_utr;Parent=Msa0980990-mRNA-1
chr6_4 CDS 19674811 19676121 19674811 ID=Msa0980990-mRNA-1:cds;Parent=Msa0980990-mRNA-1
chr6_4 CDS 19673993 19674487 19673993 ID=Msa0980990-mRNA-1:cds;Parent=Msa0980990-mRNA-1
chr6_4 three_prime_UTR 19673719 19673992 19673719 ID=Msa0980990-mRNA-1:three_prime_utr;Parent=Msa0980990-mRNA-1
Gene Sequence

>Msa0980990

ATGGGAAGGAATTTGAGTCCTGTGTTACGAAGAGAGCTTGAAAATCTAGACAAAGACGCGGATAGTCGCAAATCTGCGATGAGAGCATTAAAATCTTATGTGAAAGATTTGGATTTTAGGGCAATTCCTATGTTTCTTGCTCAAGTTTCTGAGACCAAGGAAACCGGTACTGTGTCTGGAGAATTCACAATTTCGCTGTATGAAGTTCTTGCTAGGGTTCATGGTGTCAAAATTGTTCCAATGATTGACAGTATCATGCAATCCATAATTCAGACTTTAGCTTCGAGTGCAGGGTCGTTCCCTCTTCAACAGGCTTGCTCAAGGGTAGTTCCAGCTGTCGCTAGATATGGAATTGATCCAACGATGCCGGAGGATAAGAAGAAACATATAATTCATTCTATTTGTAAGCCTCTATCTGATTCGCTCACGAGTTCCCTGGATAGTTTGAGTTGCGGTGCAGCTCTTTGCTTGAAGGCTCTTGTTGATTCGGATAATTGGCGGTTTGCTTCTGATGAAATGGTTAATAGGGTTTGCCAGAATGTTGCTGTGGCGTTAGAAGGAAAGTCTACTCAGACTAATTTGCATATGGGTTTGGTTATGTCATTAGCCAAGCATAACTCTTTGATTGTTGAAGCATATGCTCGACTGCTCATACAATCTGGGCTGCGCATGTTAAATGTCAGTGGAGAGTCTATGGATGGTAATTCTCAGAAGCGGTTCGCAGCTATTCAAATGGTGAACTACCTGATGAAGTGTTTAGATCCACGGAGTATTTTCTCGGAGGTCGAACAAGTAATTGAGGAGATGGAGCAGTGCCAGTCCGATAAAATGGCATTCATCAAAGGCGCTGCACTTGAAGCCTTGCAAACAGCTAAGAAAGTTGCGAACGACAAAAAATTGAGAGGCATGAAGAGTCCTGCTTCGGTGACGGGTTCCAATTTTAGTGGAAGAGATTTTATGGATGGAGATAGTTCTTCAGGTGATGGAGACCGTACTCCCACATCTGATTCACCAGAGTCACGTACTCTCGAATACTTCCCTGGATATGGATCCCTGGCTGAGTCTCCTATTTCGACATGTCAATCTATTCATAATTTGAACTATTCACGAAGGAGTGTCAATAGGAAGCTTTGGAGCCTTGAAAATGGAGGGGTTGATGTGTCTCTCAAGGACGGTCTGTTCTCAAGTGCAGAGGAGAGAAATGGTACGGATCACACGTTTCTGAATGGTGGAGATTTAACTGAGGAGTTTGCTTTCATCCCCAGAAGTCCTAGACAAGGAATATCCAGAAGTACCAACACAAGTCCTCTCAGATCACACACTCGCGTCAATGTTGACAGCATTCAGATTTTTGACACTCCAAAGAGGCTCATCCGCTCTCTTCAAGATCCAACCGATGAGAGTTCCGATTGTTCTGAAAAACCGATTCGAAGGTTCAAGAGTCTATCATCAGGCAATATTGATTGGAGTCCATCAGCTTATTCTAAATATGACCAGAATGGTTTAGCAAATCACGACAAGTATGATGGCAAAGAGTACGGAAGCTCATGCGGTGACGGACAGTATCAAGGAGGATCAGAATCAGTCTCATCAACCGACGACCTTCCTGCTGATGCTGATAACCAGAGGCCTTCTGAAGATGTTCGTGAAAGTAGAAAAGATCCACAAATTGTTCGCGCTGAAAAGCCACTTCAAAAGACCAAGCGCAGATTTGTTTGCGGACTATCTTTCGTCATTCTTGCAATGGCCACACCTTTAATTTGGCTCAACAGTCAAGAAGAAGCACATTTCCTTGTTCCTACATAA

Protein sequence

>Msa0980990

MGRNLSPVLRRELENLDKDADSRKSAMRALKSYVKDLDFRAIPMFLAQVSETKETGTVSGEFTISLYEVLARVHGVKIVPMIDSIMQSIIQTLASSAGSFPLQQACSRVVPAVARYGIDPTMPEDKKKHIIHSICKPLSDSLTSSLDSLSCGAALCLKALVDSDNWRFASDEMVNRVCQNVAVALEGKSTQTNLHMGLVMSLAKHNSLIVEAYARLLIQSGLRMLNVSGESMDGNSQKRFAAIQMVNYLMKCLDPRSIFSEVEQVIEEMEQCQSDKMAFIKGAALEALQTAKKVANDKKLRGMKSPASVTGSNFSGRDFMDGDSSSGDGDRTPTSDSPESRTLEYFPGYGSLAESPISTCQSIHNLNYSRRSVNRKLWSLENGGVDVSLKDGLFSSAEERNGTDHTFLNGGDLTEEFAFIPRSPRQGISRSTNTSPLRSHTRVNVDSIQIFDTPKRLIRSLQDPTDESSDCSEKPIRRFKSLSSGNIDWSPSAYSKYDQNGLANHDKYDGKEYGSSCGDGQYQGGSESVSSTDDLPADADNQRPSEDVRESRKDPQIVRAEKPLQKTKRRFVCGLSFVILAMATPLIWLNSQEEAHFLVPT*