AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035570 MtrunA17_Chr7g0259821 93.709 302 11 2 1 302 1 294 0.0 540
Msa1035570 MtrunA17_Chr8g0334431 48.837 129 64 1 166 292 169 297 7.65e-30 115
Msa1035570 MtrunA17_Chr7g0245331 31.429 280 143 8 38 288 92 351 9.91e-29 114
Msa1035570 MtrunA17_Chr3g0108551 35.565 239 115 6 70 293 161 375 6.01e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035570 AT4G02800.1 55.108 323 130 6 1 312 1 319 5.68e-102 302
Msa1035570 AT5G01970.2 37.441 211 120 4 77 283 6 208 1.74e-32 121
Msa1035570 AT5G01970.1 37.327 217 124 4 71 283 97 305 2.06e-32 123
Msa1035570 AT1G30050.1 55.556 108 47 1 168 274 183 290 1.48e-30 119
Msa1035570 AT2G30530.1 53.271 107 50 0 168 274 226 332 5.41e-23 98.2

Find 81 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAATGAATCTAAGATTT+TGG 0.072285 7_1:-71446383 None:intergenic
AAGTGAATGTTTAATAAATT+TGG 0.149873 7_1:-71448627 None:intergenic
ACAGAGTCACAAACAGAAAA+TGG 0.208517 7_1:+71447136 Msa1035570:CDS
ACTAATATTATTATCACATT+TGG 0.275672 7_1:-71448440 None:intergenic
CTTCAGCTGGAAGCACTTCT+TGG 0.294756 7_1:+71447989 Msa1035570:CDS
CCATAGGGTGCAAGAGAATT+GGG 0.312480 7_1:+71446965 Msa1035570:intron
TCCATAGGGTGCAAGAGAAT+TGG 0.320035 7_1:+71446964 Msa1035570:intron
TAATTTGGACAATGCCTTGC+TGG 0.350274 7_1:+71446495 Msa1035570:CDS
AATGTTTAATAAATTTGGTT+TGG 0.356208 7_1:-71448622 None:intergenic
GGAACCATTGTCACATTAGT+AGG 0.357230 7_1:-71448419 None:intergenic
CATCTTCCGATAAACGCTTC+TGG 0.357963 7_1:+71446311 Msa1035570:CDS
ATGTTTAATAAATTTGGTTT+GGG 0.383873 7_1:-71448621 None:intergenic
AAAATTTGGTTTGCATGAAA+TGG 0.390413 7_1:-71448321 None:intergenic
CACCAGAGAACTTGTAGAAA+TGG 0.394974 7_1:-71448266 None:intergenic
CGAAACCGTCACGCAATCTT+CGG 0.399997 7_1:-71447423 None:intergenic
CAGAGTCACAAACAGAAAAT+GGG 0.402856 7_1:+71447137 Msa1035570:CDS
GATTCGTTGTTGCTCATAAG+AGG 0.407447 7_1:+71446433 Msa1035570:CDS
TTGCGTGACGGTTTCGCTAA+AGG 0.407989 7_1:+71447430 Msa1035570:CDS
TTTGCAGATTGCAGTTTCAA+TGG 0.433732 7_1:+71447306 Msa1035570:intron
TTCTCCTCTTCACATCAAAC+AGG 0.442956 7_1:+71446158 Msa1035570:CDS
AACCATTTCTACAAGTTCTC+TGG 0.444144 7_1:+71448264 Msa1035570:three_prime_UTR
AGAAGCAGAGAAAGAGAAAG+AGG 0.454038 7_1:+71447060 Msa1035570:CDS
TTCATCCCTTGTCTCTTCTC+CGG 0.455453 7_1:-71448179 None:intergenic
TCTCCACCACGATCAATTGC+CGG 0.462348 7_1:+71448160 Msa1035570:CDS
CAGGCCTGAGGAAGATGATC+TGG 0.475023 7_1:+71447456 Msa1035570:CDS
CCACCAGCTGGTGAAGGCAT+TGG 0.478762 7_1:-71448060 None:intergenic
TGAAAGAGGAAAACGATTGA+AGG 0.478931 7_1:+71446408 Msa1035570:CDS
GATTCATTACAGAATGAAAG+AGG 0.481804 7_1:+71446394 Msa1035570:CDS
AGAAGTCCAAGCACATTCCT+TGG 0.491643 7_1:-71448135 None:intergenic
AGTGCTCCAGAAGCGTTTAT+CGG 0.496763 7_1:-71446317 None:intergenic
ACGGTTTCGCTAAAGGAGTC+AGG 0.501339 7_1:+71447437 Msa1035570:CDS
GGTGTAGGTGAGGCTTCAGC+TGG 0.502604 7_1:+71447976 Msa1035570:intron
CTTACCAGATCATCTTCCTC+AGG 0.509130 7_1:-71447460 None:intergenic
AATATATCAGTTAATGTGGG+TGG 0.516844 7_1:-71446992 None:intergenic
AAACCAATGCCTTCACCAGC+TGG 0.518473 7_1:+71448057 Msa1035570:CDS
AGACTGTCACATTATAATAG+TGG 0.519320 7_1:-71448476 None:intergenic
CAGAAGCGTTTATCGGAAGA+TGG 0.528157 7_1:-71446310 None:intergenic
GTAGAAATGGTTACTAGAGA+TGG 0.530230 7_1:-71448253 None:intergenic
TTACAGAGGGGATGTTATGA+TGG 0.536525 7_1:-71448350 None:intergenic
GGTTACTAGAGATGGTTCCT+TGG 0.537693 7_1:-71448245 None:intergenic
GGAAGCACTTCTTGGTGAGA+AGG 0.546681 7_1:+71447997 Msa1035570:CDS
AGTCATCCAAGGAATGTGCT+TGG 0.547639 7_1:+71448129 Msa1035570:CDS
TTTGAATATATCAGTTAATG+TGG 0.556491 7_1:-71446996 None:intergenic
AAAACCTGTTTGATGTGAAG+AGG 0.562179 7_1:-71446162 None:intergenic
TTGAATATATCAGTTAATGT+GGG 0.565772 7_1:-71446995 None:intergenic
AGTCAAAGCAAGGAGTAAAG+AGG 0.574305 7_1:+71447083 Msa1035570:CDS
GAAGAGACAAGGGATGAAGA+TGG 0.575725 7_1:+71448184 Msa1035570:CDS
ATTCGTTGTTGCTCATAAGA+GGG 0.576596 7_1:+71446434 Msa1035570:CDS
ATTTGCAGCATCATTACAGA+GGG 0.577586 7_1:-71448363 None:intergenic
TGTTTGATGTGAAGAGGAGA+AGG 0.578043 7_1:-71446156 None:intergenic
AAATACCATGACAACCTCGT+TGG 0.584632 7_1:+71446122 Msa1035570:exon
CAATTGCCGGAGAAGAGACA+AGG 0.585854 7_1:+71448173 Msa1035570:CDS
TGTGTCCAACGAGGTTGTCA+TGG 0.586407 7_1:-71446127 None:intergenic
CATAGGGTGCAAGAGAATTG+GGG 0.596960 7_1:+71446966 Msa1035570:intron
AGTGAGATAATCTTAACTAA+CGG 0.602190 7_1:-71446052 None:intergenic
GATACTCCACCAGCTGGTGA+AGG 0.606126 7_1:-71448066 None:intergenic
TCTCCGGCAATTGATCGTGG+TGG 0.606421 7_1:-71448163 None:intergenic
TCTTCTCCGGCAATTGATCG+TGG 0.606721 7_1:-71448166 None:intergenic
TCATATGAGCAAGTCATCCA+AGG 0.609790 7_1:+71448118 Msa1035570:CDS
TTGCATGAAATGGTGATGGT+AGG 0.612666 7_1:-71448311 None:intergenic
CCAATGCCTTCACCAGCTGG+TGG 0.614590 7_1:+71448060 Msa1035570:CDS
TGGTTTGCATGAAATGGTGA+TGG 0.615131 7_1:-71448315 None:intergenic
GCTCATAAGAGGGTTTGACT+CGG 0.617847 7_1:+71446444 Msa1035570:CDS
GAGAAAGAGGAGTCAAAGCA+AGG 0.618162 7_1:+71447073 Msa1035570:CDS
TCTTCCTACTAATGTGACAA+TGG 0.625282 7_1:+71448415 Msa1035570:three_prime_UTR
CGCTAAAGGAGTCAGGCCTG+AGG 0.629684 7_1:+71447444 Msa1035570:CDS
GTTGATGATACTCCACCAGC+TGG 0.633667 7_1:-71448072 None:intergenic
AGAGTCACAAACAGAAAATG+GGG 0.641781 7_1:+71447138 Msa1035570:CDS
TGTAATACTACTTACCAGCA+AGG 0.646639 7_1:-71446509 None:intergenic
ACATTATAATAGTGGCGGAG+TGG 0.655847 7_1:-71448468 None:intergenic
CTGTCACATTATAATAGTGG+CGG 0.659217 7_1:-71448473 None:intergenic
TATTTGCAGCATCATTACAG+AGG 0.660089 7_1:-71448364 None:intergenic
AATTGCCGGAGAAGAGACAA+GGG 0.670922 7_1:+71448174 Msa1035570:CDS
TCGGAAGATGGAGTGAACTG+AGG 0.679491 7_1:-71446298 None:intergenic
GAGAACCGAAGATTGCGTGA+CGG 0.684297 7_1:+71447418 Msa1035570:CDS
GAGAAGAACTATGAACACCA+AGG 0.704185 7_1:+71448228 Msa1035570:exon
GAAGCGAGTCAATTCTACAA+CGG 0.721187 7_1:-71446342 None:intergenic
CTTGCTCATATGACTCAGAG+AGG 0.724039 7_1:-71448108 None:intergenic
AGGAGAAGCTGTGTCCAACG+AGG 0.737241 7_1:-71446136 None:intergenic
GACTCGCTTCTCGATAAACG+CGG 0.746002 7_1:+71446355 Msa1035570:CDS
TTTGCAGCATCATTACAGAG+GGG 0.746992 7_1:-71448362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACATTAATTAAT+TGG - chr7_1:71446567-71446586 None:intergenic 10.0%
!!! TTTAGAATTTCATTGATTTT+AGG + chr7_1:71447897-71447916 Msa1035570:intron 15.0%
!! ACTAATATTATTATCACATT+TGG - chr7_1:71448443-71448462 None:intergenic 15.0%
!!! ATGTTTTTTTTTAGAGTAAG+AGG - chr7_1:71446189-71446208 None:intergenic 20.0%
!!! TGTAATGAATCTAAGATTTT+GGG - chr7_1:71446385-71446404 None:intergenic 20.0%
!!! ATCTCTTTTGTCTAATAATT+TGG + chr7_1:71446480-71446499 Msa1035570:CDS 20.0%
!!! TTTTAACCATATCAAAAAAG+CGG - chr7_1:71446648-71446667 None:intergenic 20.0%
!!! TTTTTCTTCTATATTTGAGA+CGG - chr7_1:71446796-71446815 None:intergenic 20.0%
!! GAGTTATCTAGTTAAAAATT+TGG + chr7_1:71446830-71446849 Msa1035570:intron 20.0%
!! ACTAAAAAATCTACTTTATC+CGG - chr7_1:71446910-71446929 None:intergenic 20.0%
!!! ATTCAGATTATTTTTCCATA+GGG + chr7_1:71446950-71446969 Msa1035570:intron 20.0%
!! TTGAATATATCAGTTAATGT+GGG - chr7_1:71446998-71447017 None:intergenic 20.0%
!! TTTGAATATATCAGTTAATG+TGG - chr7_1:71446999-71447018 None:intergenic 20.0%
!! AATCTTAATCATATACCATA+TGG + chr7_1:71447493-71447512 Msa1035570:intron 20.0%
!!! TTCAAATTCTTTTAACCATA+TGG - chr7_1:71447511-71447530 None:intergenic 20.0%
!! ATTGTAATTAGACATTAGTT+AGG + chr7_1:71447611-71447630 Msa1035570:intron 20.0%
!! CATAATAATTTGAACAATTC+AGG - chr7_1:71447925-71447944 None:intergenic 20.0%
!! CTGAATTGTTCAAATTATTA+TGG + chr7_1:71447923-71447942 Msa1035570:intron 20.0%
!! CTAAAAAAATATATCTTGCA+TGG + chr7_1:71448511-71448530 Msa1035570:three_prime_UTR 20.0%
! AGTGAGATAATCTTAACTAA+CGG - chr7_1:71446055-71446074 None:intergenic 25.0%
!! TGTTTTCGTTTTATAACAAC+AGG + chr7_1:71446246-71446265 Msa1035570:intron 25.0%
!!! CTGTAATGAATCTAAGATTT+TGG - chr7_1:71446386-71446405 None:intergenic 25.0%
!!! TAATAACCGCTTTTTTGATA+TGG + chr7_1:71446639-71446658 Msa1035570:intron 25.0%
!!! TTTTTGTTTATATTCGAGAC+CGG + chr7_1:71446888-71446907 Msa1035570:intron 25.0%
!!! CATTCAGATTATTTTTCCAT+AGG + chr7_1:71446949-71446968 Msa1035570:intron 25.0%
! ATCAAGAAAGCAAAAAATGT+TGG + chr7_1:71447181-71447200 Msa1035570:intron 25.0%
! TCCTAGTTAGTAGATTATAT+TGG + chr7_1:71447246-71447265 Msa1035570:intron 25.0%
! ACCAATATAATCTACTAACT+AGG - chr7_1:71447250-71447269 None:intergenic 25.0%
! TTCTTAAAACAATTGCATTG+AGG - chr7_1:71447730-71447749 None:intergenic 25.0%
!!! GAATCATTGTTGATAACAAT+AGG + chr7_1:71447754-71447773 Msa1035570:intron 25.0%
! ATTATGGAACTAATCTTATG+TGG + chr7_1:71447939-71447958 Msa1035570:intron 25.0%
!!! AAAATTTGGTTTGCATGAAA+TGG - chr7_1:71448324-71448343 None:intergenic 25.0%
!! TATGATGGTGCTAAAAAATT+TGG - chr7_1:71448338-71448357 None:intergenic 25.0%
GATTCATTACAGAATGAAAG+AGG + chr7_1:71446394-71446413 Msa1035570:CDS 30.0%
AATATATCAGTTAATGTGGG+TGG - chr7_1:71446995-71447014 None:intergenic 30.0%
! TGTTTTATGCAAGAAAGATG+TGG + chr7_1:71447382-71447401 Msa1035570:CDS 30.0%
!! CACAGTTTTTCTCTAGAAAT+TGG + chr7_1:71447661-71447680 Msa1035570:intron 30.0%
!! TTTTTCTCTAGAAATTGGAG+TGG + chr7_1:71447666-71447685 Msa1035570:intron 30.0%
TATTCTCTTTGAACAATTCC+AGG - chr7_1:71447850-71447869 None:intergenic 30.0%
AACTAATCTTATGTGGATGA+TGG + chr7_1:71447946-71447965 Msa1035570:intron 30.0%
! CATCAGATTTGCATTTTCAT+TGG - chr7_1:71448032-71448051 None:intergenic 30.0%
! TTATTTTCTGCGGTAATACA+AGG - chr7_1:71448392-71448411 None:intergenic 30.0%
! AGGAAGATCATTATTTTCTG+CGG - chr7_1:71448402-71448421 None:intergenic 30.0%
AGACTGTCACATTATAATAG+TGG - chr7_1:71448479-71448498 None:intergenic 30.0%
AAAACCTGTTTGATGTGAAG+AGG - chr7_1:71446165-71446184 None:intergenic 35.0%
TGAAAGAGGAAAACGATTGA+AGG + chr7_1:71446408-71446427 Msa1035570:CDS 35.0%
ATTCGTTGTTGCTCATAAGA+GGG + chr7_1:71446434-71446453 Msa1035570:CDS 35.0%
TGTAATACTACTTACCAGCA+AGG - chr7_1:71446512-71446531 None:intergenic 35.0%
ACAGAGTCACAAACAGAAAA+TGG + chr7_1:71447136-71447155 Msa1035570:CDS 35.0%
CAGAGTCACAAACAGAAAAT+GGG + chr7_1:71447137-71447156 Msa1035570:CDS 35.0%
AGAGTCACAAACAGAAAATG+GGG + chr7_1:71447138-71447157 Msa1035570:CDS 35.0%
!! CTAGTACAATGGTTGATAAG+AGG - chr7_1:71447226-71447245 None:intergenic 35.0%
! ACTAACTAGGACTAGTACAA+TGG - chr7_1:71447237-71447256 None:intergenic 35.0%
!! TATATTGGTGCTGAAGTTTG+TGG + chr7_1:71447261-71447280 Msa1035570:intron 35.0%
TTTGCAGATTGCAGTTTCAA+TGG + chr7_1:71447306-71447325 Msa1035570:intron 35.0%
AACATCACTAACTCTTTCAC+AGG - chr7_1:71447540-71447559 None:intergenic 35.0%
ATTGGAGTGGTCTAGTTATT+TGG + chr7_1:71447679-71447698 Msa1035570:intron 35.0%
! TGTGTTGATCAATTTAGTCC+TGG + chr7_1:71447829-71447848 Msa1035570:intron 35.0%
GTAGAAATGGTTACTAGAGA+TGG - chr7_1:71448256-71448275 None:intergenic 35.0%
AACCATTTCTACAAGTTCTC+TGG + chr7_1:71448264-71448283 Msa1035570:three_prime_UTR 35.0%
ATTTGCAGCATCATTACAGA+GGG - chr7_1:71448366-71448385 None:intergenic 35.0%
TATTTGCAGCATCATTACAG+AGG - chr7_1:71448367-71448386 None:intergenic 35.0%
TCTTCCTACTAATGTGACAA+TGG + chr7_1:71448415-71448434 Msa1035570:three_prime_UTR 35.0%
CTGTCACATTATAATAGTGG+CGG - chr7_1:71448476-71448495 None:intergenic 35.0%
AAATACCATGACAACCTCGT+TGG + chr7_1:71446122-71446141 Msa1035570:exon 40.0%
TGTTTGATGTGAAGAGGAGA+AGG - chr7_1:71446159-71446178 None:intergenic 40.0%
TTCTCCTCTTCACATCAAAC+AGG + chr7_1:71446158-71446177 Msa1035570:CDS 40.0%
GAAGCGAGTCAATTCTACAA+CGG - chr7_1:71446345-71446364 None:intergenic 40.0%
GATTCGTTGTTGCTCATAAG+AGG + chr7_1:71446433-71446452 Msa1035570:CDS 40.0%
TAATTTGGACAATGCCTTGC+TGG + chr7_1:71446495-71446514 Msa1035570:CDS 40.0%
AGAAGCAGAGAAAGAGAAAG+AGG + chr7_1:71447060-71447079 Msa1035570:CDS 40.0%
AGTCAAAGCAAGGAGTAAAG+AGG + chr7_1:71447083-71447102 Msa1035570:CDS 40.0%
! TATGTGGATGATGGTTTGTG+TGG + chr7_1:71447955-71447974 Msa1035570:intron 40.0%
TCATATGAGCAAGTCATCCA+AGG + chr7_1:71448118-71448137 Msa1035570:CDS 40.0%
GAGAAGAACTATGAACACCA+AGG + chr7_1:71448228-71448247 Msa1035570:exon 40.0%
CACCAGAGAACTTGTAGAAA+TGG - chr7_1:71448269-71448288 None:intergenic 40.0%
! CTCTGGTGAACTTTTGATGA+TGG + chr7_1:71448281-71448300 Msa1035570:three_prime_UTR 40.0%
!! TTGCATGAAATGGTGATGGT+AGG - chr7_1:71448314-71448333 None:intergenic 40.0%
! TGGTTTGCATGAAATGGTGA+TGG - chr7_1:71448318-71448337 None:intergenic 40.0%
TTACAGAGGGGATGTTATGA+TGG - chr7_1:71448353-71448372 None:intergenic 40.0%
TTTGCAGCATCATTACAGAG+GGG - chr7_1:71448365-71448384 None:intergenic 40.0%
GGAACCATTGTCACATTAGT+AGG - chr7_1:71448422-71448441 None:intergenic 40.0%
! ACATTATAATAGTGGCGGAG+TGG - chr7_1:71448471-71448490 None:intergenic 40.0%
!! CAGAAGCGTTTATCGGAAGA+TGG - chr7_1:71446313-71446332 None:intergenic 45.0%
CATCTTCCGATAAACGCTTC+TGG + chr7_1:71446311-71446330 Msa1035570:CDS 45.0%
!! AGTGCTCCAGAAGCGTTTAT+CGG - chr7_1:71446320-71446339 None:intergenic 45.0%
GCTCATAAGAGGGTTTGACT+CGG + chr7_1:71446444-71446463 Msa1035570:CDS 45.0%
TCCATAGGGTGCAAGAGAAT+TGG + chr7_1:71446964-71446983 Msa1035570:intron 45.0%
CCATAGGGTGCAAGAGAATT+GGG + chr7_1:71446965-71446984 Msa1035570:intron 45.0%
CATAGGGTGCAAGAGAATTG+GGG + chr7_1:71446966-71446985 Msa1035570:intron 45.0%
GAGAAAGAGGAGTCAAAGCA+AGG + chr7_1:71447073-71447092 Msa1035570:CDS 45.0%
CTTACCAGATCATCTTCCTC+AGG - chr7_1:71447463-71447482 None:intergenic 45.0%
CTGAGGAAGATGATCTGGTA+AGG + chr7_1:71447461-71447480 Msa1035570:intron 45.0%
! GATGATGGTTTGTGTGGTGT+AGG + chr7_1:71447961-71447980 Msa1035570:intron 45.0%
CTTGCTCATATGACTCAGAG+AGG - chr7_1:71448111-71448130 None:intergenic 45.0%
AGTCATCCAAGGAATGTGCT+TGG + chr7_1:71448129-71448148 Msa1035570:CDS 45.0%
AGAAGTCCAAGCACATTCCT+TGG - chr7_1:71448138-71448157 None:intergenic 45.0%
AATTGCCGGAGAAGAGACAA+GGG + chr7_1:71448174-71448193 Msa1035570:CDS 45.0%
TTCATCCCTTGTCTCTTCTC+CGG - chr7_1:71448182-71448201 None:intergenic 45.0%
GAAGAGACAAGGGATGAAGA+TGG + chr7_1:71448184-71448203 Msa1035570:CDS 45.0%
GGTTACTAGAGATGGTTCCT+TGG - chr7_1:71448248-71448267 None:intergenic 45.0%
TGTGTCCAACGAGGTTGTCA+TGG - chr7_1:71446130-71446149 None:intergenic 50.0%
TCGGAAGATGGAGTGAACTG+AGG - chr7_1:71446301-71446320 None:intergenic 50.0%
GACTCGCTTCTCGATAAACG+CGG + chr7_1:71446355-71446374 Msa1035570:CDS 50.0%
CCCAATTCTCTTGCACCCTA+TGG - chr7_1:71446968-71446987 None:intergenic 50.0%
GAGAACCGAAGATTGCGTGA+CGG + chr7_1:71447418-71447437 Msa1035570:CDS 50.0%
CGAAACCGTCACGCAATCTT+CGG - chr7_1:71447426-71447445 None:intergenic 50.0%
TTGCGTGACGGTTTCGCTAA+AGG + chr7_1:71447430-71447449 Msa1035570:CDS 50.0%
ACGGTTTCGCTAAAGGAGTC+AGG + chr7_1:71447437-71447456 Msa1035570:CDS 50.0%
! TGGTTTGTGTGGTGTAGGTG+AGG + chr7_1:71447966-71447985 Msa1035570:intron 50.0%
!! CTTCAGCTGGAAGCACTTCT+TGG + chr7_1:71447989-71448008 Msa1035570:CDS 50.0%
!! GGAAGCACTTCTTGGTGAGA+AGG + chr7_1:71447997-71448016 Msa1035570:CDS 50.0%
AAACCAATGCCTTCACCAGC+TGG + chr7_1:71448057-71448076 Msa1035570:CDS 50.0%
!! GTTGATGATACTCCACCAGC+TGG - chr7_1:71448075-71448094 None:intergenic 50.0%
TCTCCACCACGATCAATTGC+CGG + chr7_1:71448160-71448179 Msa1035570:CDS 50.0%
TCTTCTCCGGCAATTGATCG+TGG - chr7_1:71448169-71448188 None:intergenic 50.0%
CAATTGCCGGAGAAGAGACA+AGG + chr7_1:71448173-71448192 Msa1035570:CDS 50.0%
AGGAGAAGCTGTGTCCAACG+AGG - chr7_1:71446139-71446158 None:intergenic 55.0%
CAGGCCTGAGGAAGATGATC+TGG + chr7_1:71447456-71447475 Msa1035570:CDS 55.0%
GATACTCCACCAGCTGGTGA+AGG - chr7_1:71448069-71448088 None:intergenic 55.0%
TCTCCGGCAATTGATCGTGG+TGG - chr7_1:71448166-71448185 None:intergenic 55.0%
CGCTAAAGGAGTCAGGCCTG+AGG + chr7_1:71447444-71447463 Msa1035570:CDS 60.0%
GGTGTAGGTGAGGCTTCAGC+TGG + chr7_1:71447976-71447995 Msa1035570:intron 60.0%
! CCACCAGCTGGTGAAGGCAT+TGG - chr7_1:71448063-71448082 None:intergenic 60.0%
CCAATGCCTTCACCAGCTGG+TGG + chr7_1:71448060-71448079 Msa1035570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71446043 71448641 71446043 ID=Msa1035570;Name=Msa1035570
chr7_1 mRNA 71446043 71448641 71446043 ID=Msa1035570-mRNA-1;Parent=Msa1035570;Name=Msa1035570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=66|1|1|1|0.8|0.66|6|413|312
chr7_1 exon 71446043 71446093 71446043 ID=Msa1035570-mRNA-1:exon:17269;Parent=Msa1035570-mRNA-1
chr7_1 exon 71446114 71446179 71446114 ID=Msa1035570-mRNA-1:exon:17270;Parent=Msa1035570-mRNA-1
chr7_1 exon 71446268 71446516 71446268 ID=Msa1035570-mRNA-1:exon:17271;Parent=Msa1035570-mRNA-1
chr7_1 exon 71446971 71447198 71446971 ID=Msa1035570-mRNA-1:exon:17272;Parent=Msa1035570-mRNA-1
chr7_1 exon 71447313 71447477 71447313 ID=Msa1035570-mRNA-1:exon:17273;Parent=Msa1035570-mRNA-1
chr7_1 exon 71447983 71448641 71447983 ID=Msa1035570-mRNA-1:exon:17274;Parent=Msa1035570-mRNA-1
chr7_1 five_prime_UTR 71446043 71446093 71446043 ID=Msa1035570-mRNA-1:five_prime_utr;Parent=Msa1035570-mRNA-1
chr7_1 five_prime_UTR 71446114 71446128 71446114 ID=Msa1035570-mRNA-1:five_prime_utr;Parent=Msa1035570-mRNA-1
chr7_1 CDS 71446129 71446179 71446129 ID=Msa1035570-mRNA-1:cds;Parent=Msa1035570-mRNA-1
chr7_1 CDS 71446268 71446516 71446268 ID=Msa1035570-mRNA-1:cds;Parent=Msa1035570-mRNA-1
chr7_1 CDS 71446971 71447198 71446971 ID=Msa1035570-mRNA-1:cds;Parent=Msa1035570-mRNA-1
chr7_1 CDS 71447313 71447477 71447313 ID=Msa1035570-mRNA-1:cds;Parent=Msa1035570-mRNA-1
chr7_1 CDS 71447983 71448228 71447983 ID=Msa1035570-mRNA-1:cds;Parent=Msa1035570-mRNA-1
chr7_1 three_prime_UTR 71448229 71448641 71448229 ID=Msa1035570-mRNA-1:three_prime_utr;Parent=Msa1035570-mRNA-1
Gene Sequence

>Msa1035570

ATGACAACCTCGTTGGACACAGCTTCTCCTTCTCCTCTTCACATCAAACAGGATGATACAAACGTTGTTAATTCTTCTTCTCCTCAGTTCACTCCATCTTCCGATAAACGCTTCTGGAGCACTCTCCGTTGTAGAATTGACTCGCTTCTCGATAAACGCGGTCAACCCAAAATCTTAGATTCATTACAGAATGAAAGAGGAAAACGATTGAAGGAAGATTCGTTGTTGCTCATAAGAGGGTTTGACTCGGTTTCTAATACACTATCTCTTTTGTCTAATAATTTGGACAATGCCTTGCTGGGTGCAAGAGAATTGGGGAATCCACCCACATTAACTGATATATTCAAAAGCAAAATTGATCAGTCAGAAAACAATGAAGAAGAGAATTCAGAAGCAGAGAAAGAGAAAGAGGAGTCAAAGCAAGGAGTAAAGAGGAAAATTGATGAATTCTATGAAGAAAATGTTACAGAGTCACAAACAGAAAATGGGGAAAAGATGCATGAAAAGCATATCAAGAAAGCAAAAAATATTGCAGTTTCAATGGCAAGCAAAGCAGCTTCACTTGCAAGAGAATTGAAGTCTCTTAAATCAGATTTATGTTTTATGCAAGAAAGATGTGGTCTGCTTGAAGAAGAGAACCGAAGATTGCGTGACGGTTTCGCTAAAGGAGTCAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAGCTGGAAGCACTTCTTGGTGAGAAGGCAAGACTAGCCAATGAAAATGCAAATCTGATGAGAGAAAACCAATGCCTTCACCAGCTGGTGGAGTATCATCAACATACTTCACAAGACCTCTCTGAGTCATATGAGCAAGTCATCCAAGGAATGTGCTTGGACTTCTCATCTCCACCACGATCAATTGCCGGAGAAGAGACAAGGGATGAAGATGGTGCTGATGATGATGAGAAATAG

Protein sequence

>Msa1035570

MTTSLDTASPSPLHIKQDDTNVVNSSSPQFTPSSDKRFWSTLRCRIDSLLDKRGQPKILDSLQNERGKRLKEDSLLLIRGFDSVSNTLSLLSNNLDNALLGARELGNPPTLTDIFKSKIDQSENNEEENSEAEKEKEESKQGVKRKIDEFYEENVTESQTENGEKMHEKHIKKAKNIAVSMASKAASLARELKSLKSDLCFMQERCGLLEEENRRLRDGFAKGVRPEEDDLVRLQLEALLGEKARLANENANLMRENQCLHQLVEYHQHTSQDLSESYEQVIQGMCLDFSSPPRSIAGEETRDEDGADDDEK*