AlfalfaGEDB | Msa1041820

M. sativa cultivar zhongmu-4 / Msa1041820

KEGG: K13680
GO: GO:0000030 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0043207 GO:0044764 GO:0050896 GO:0051704 GO:0051707 GO:0051753 GO:0070085 GO:0097502
PFAM: PF13641.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041820	XP_013450087.1	98.758	483	5	1	1	483	1	482	0.0	988

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041820	sp\|Q9LZR3\|CSLA9_ARATH	79.324	503	99	3	1	502	1	499	0.0	854

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041820	A0A072UE63	98.758	483	5	1	1	483	1	482	0.0	988

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018220	Msa1041820	0.858180	9.832494e-63	-8.615850e-47
Msa0033650	Msa1041820	0.802123	6.513379e-49	-8.615850e-47
Msa0052020	Msa1041820	0.846768	1.764749e-59	-8.615850e-47
Msa0052460	Msa1041820	0.841643	4.194936e-58	-8.615850e-47
Msa0097050	Msa1041820	0.856878	2.387997e-62	-8.615850e-47
Msa0142470	Msa1041820	0.816126	6.492685e-52	-8.615850e-47
Msa0168390	Msa1041820	0.810029	1.412005e-50	-8.615850e-47
Msa0169730	Msa1041820	0.804782	1.830966e-49	-8.615850e-47
Msa0207180	Msa1041820	0.809682	1.677347e-50	-8.615850e-47
Msa0219660	Msa1041820	0.803761	2.987534e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041820	MtrunA17_Chr7g0265711	98.758	483	5	1	1	483	1	482	0.0	988
Msa1041820	MtrunA17_Chr1g0179441	85.501	469	68	0	12	480	2	470	0.0	871
Msa1041820	MtrunA17_Chr1g0179381	77.684	475	105	1	13	487	3	476	0.0	801
Msa1041820	MtrunA17_Chr1g0179421	76.582	474	111	0	13	486	3	476	0.0	800
Msa1041820	MtrunA17_Chr1g0198111	76.923	481	106	2	1	480	1	477	0.0	777
Msa1041820	MtrunA17_Chr4g0027221	71.460	452	128	1	10	461	10	460	0.0	726
Msa1041820	MtrunA17_Chr7g0264621	68.062	454	142	2	29	480	25	477	0.0	679
Msa1041820	MtrunA17_Chr1g0179391	81.711	339	62	0	142	480	1	339	0.0	612
Msa1041820	MtrunA17_Chr6g0451381	45.595	454	241	2	27	480	138	585	6.93e-144	429
Msa1041820	MtrunA17_Chr4g0000581	47.368	437	227	2	24	460	166	599	3.75e-141	423

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1041820	AT5G03760.1	79.324	503	99	3	1	502	1	499	854
Msa1041820	AT5G22740.1	72.614	482	130	2	1	480	1	482	773
Msa1041820	AT1G23480.1	69.677	465	140	1	17	480	39	503	707
Msa1041820	AT1G23480.2	69.677	465	140	1	17	480	39	503	707
Msa1041820	AT2G35650.1	66.460	483	159	1	5	487	27	506	702
Msa1041820	AT1G23480.3	72.854	431	116	1	51	480	1	431	685
Msa1041820	AT4G13410.1	63.853	462	167	0	13	474	27	488	685
Msa1041820	AT2G35650.4	69.565	437	130	1	51	487	1	434	669
Msa1041820	AT2G35650.2	69.565	437	130	1	51	487	1	434	669
Msa1041820	AT1G24070.1	67.972	434	139	0	31	464	56	489	669

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Find 142 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGGTGCTTTAAAAGA+AGG	0.496244	7_1:+79467150	Msa1041820:CDS
AAATAGGGACTGCGGGAGTA+TGG	0.352048	7_1:+79469832	Msa1041820:intron
AACACTGATATTCTTAATAA+TGG	0.287208	7_1:-79466368	None:intergenic
AACCAGAGCCTGATTTCTTG+TGG	0.520038	7_1:+79467232	Msa1041820:CDS
AACTCAATATCATCTTTAAT+CGG	0.371739	7_1:-79466503	None:intergenic
AACTGTTATTGGTCTACTGG+AGG	0.630777	7_1:+79470997	Msa1041820:CDS
AAGAATCACCAGGTCCTTCT+AGG	0.309328	7_1:-79471571	None:intergenic
AATAGAAATGGATACAAAGC+AGG	0.560746	7_1:+79467135	Msa1041820:CDS
AATTTAGAAGAAGAGATAAG+AGG	0.453589	7_1:-79465762	None:intergenic
ACAAGTCTAGTTCTGTGGCC+AGG	0.577797	7_1:+79465903	Msa1041820:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGAAGAAGAGATAAGAG+GGG	-	chr7_1:79465763-79465782	None:intergenic	30.0%
CTGAAATGGAAATATTAACC+TGG	-	chr7_1:79465924-79465943	None:intergenic	30.0%
ATCAACTTTGGTAAAGAAAC+AGG	-	chr7_1:79466110-79466129	None:intergenic	30.0%
GAGTTTAAAGGAATCAACTT+TGG	-	chr7_1:79466122-79466141	None:intergenic	30.0%
GAAGACAAATATGTGAACAA+TGG	-	chr7_1:79466173-79466192	None:intergenic	30.0%
TTCATTGAGAGGGTTTATAT+GGG	+	chr7_1:79466419-79466438	Msa1041820:CDS	30.0%
ATTACTCTTGTGAAGCTATT+TGG	+	chr7_1:79466449-79466468	Msa1041820:CDS	30.0%
AACCTGAAAAACGTTACAAA+TGG	+	chr7_1:79466477-79466496	Msa1041820:CDS	30.0%
ACCTGAAAAACGTTACAAAT+GGG	+	chr7_1:79466478-79466497	Msa1041820:CDS	30.0%
TGTATAATGATCCTATCAGA+AGG	-	chr7_1:79466703-79466722	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	79465649	79471588	79465649	ID=Msa1041820;Name=Msa1041820
chr7_1	mRNA	79465649	79471588	79465649	ID=Msa1041820-mRNA-1;Parent=Msa1041820;Name=Msa1041820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=605\|0.87\|0.77\|1\|1\|1\|9\|0\|536
chr7_1	exon	79465649	79466583	79465649	ID=Msa1041820-mRNA-1:exon:21439;Parent=Msa1041820-mRNA-1
chr7_1	exon	79466658	79466756	79466658	ID=Msa1041820-mRNA-1:exon:21440;Parent=Msa1041820-mRNA-1
chr7_1	exon	79467066	79467318	79467066	ID=Msa1041820-mRNA-1:exon:21441;Parent=Msa1041820-mRNA-1
chr7_1	exon	79469629	79469739	79469629	ID=Msa1041820-mRNA-1:exon:21442;Parent=Msa1041820-mRNA-1
chr7_1	exon	79469838	79469974	79469838	ID=Msa1041820-mRNA-1:exon:21443;Parent=Msa1041820-mRNA-1
chr7_1	exon	79470309	79470422	79470309	ID=Msa1041820-mRNA-1:exon:21444;Parent=Msa1041820-mRNA-1
chr7_1	exon	79470500	79470699	79470500	ID=Msa1041820-mRNA-1:exon:21445;Parent=Msa1041820-mRNA-1
chr7_1	exon	79470931	79471135	79470931	ID=Msa1041820-mRNA-1:exon:21446;Parent=Msa1041820-mRNA-1
chr7_1	exon	79471427	79471588	79471427	ID=Msa1041820-mRNA-1:exon:21447;Parent=Msa1041820-mRNA-1
chr7_1	five_prime_UTR	79465649	79466253	79465649	ID=Msa1041820-mRNA-1:five_prime_utr;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79466254	79466583	79466254	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79466658	79466756	79466658	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79467066	79467318	79467066	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79469629	79469739	79469629	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79469838	79469974	79469838	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79470309	79470422	79470309	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79470500	79470699	79470500	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79470931	79471135	79470931	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1
chr7_1	CDS	79471427	79471588	79471427	ID=Msa1041820-mRNA-1:cds;Parent=Msa1041820-mRNA-1

Gene Sequence

>Msa1041820

ATGGATCATTTTTCTTCTACTACTACTATCCCTTTTGCATTACAAGGAGCCAAAGATGACATAACCATGCAGATTTCTTTGATTTGGAGTCAAATCAAAGCTCCATTGATTGTTCCATTATTAAGAATATCAGTGTTTTTGTGTCTGATAATGTCGGTGATGATGTTCATTGAGAGGGTTTATATGGGTGTTGTCATTACTCTTGTGAAGCTATTTGGAAGAAAACCTGAAAAACGTTACAAATGGGAACCGATTAAAGATGATATTGAGTTAGGGAACTCTTGTTATCCTATGGTTCTTGTTCAAATACCTATGTACAATGAAAGAGAGGTTTATCAATTGTCAATTGGAGCTGCATGTGGTCTTTCATGGCCTTCTGATAGGATCATTATACAAGTTCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAACTAGAATGCCAAAGATGGGCAAGCAAAGGAGTGAATATAAAGTATGAAGTTAGGGACAATAGAAATGGATACAAAGCAGGTGCTTTAAAAGAAGGAATGAAGCATAGCTATGTGAAACAATGTGATCATGTTGCAATATTTGATGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGTACCGTGCCATTTATGGTGCATAATCCTGAAATTGGGCTTATTCAAGCTCGCTGGAAATTTGTGAATTCGGATGAATGTATGATGACTAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTTGGGTCTTCCACTTATGCCTTCTTTGGCTTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCGCTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTTGAAGATATGGACTTGGCTGTTAGAGCTAGTCTCAAAGGATGGAAGTTCTTATACTTGTCAAACCTGAAGGTTAAAAATGAATTGCCAAGTACTTTCAAGGCCTACCGTTACCAACAGCATCGTTGGTCTTGTGGACCAGCCAATCTTTTCAGGAAAATGGTCTTGGAGATTATTCAAAACAAGAAAGTGTCCTTGTGGAAGAAGATACATGTAATTTACAGTTTCTTCTTTGTTCGGAAAGTGATAGCACACATCAATACGTTTGTGTTTTATTGCATTGTTCTACCTGCAACAGTTTTGGTACCTGAAGTTGCAGTCCCAAAATGGGGAGCTGTTTATATCCCTTCAGTTATCACTCTTCTCAATGCAGTTGGAACTCCAAGGTCACTCCATTTACTCGTCTTTTGGATTCTATTTGAGAATGTTATGTCTCTACATAGAGCAAAGGCAACTGTTATTGGTCTACTGGAGGCTAGTCGAGTGAATGAATGGATTGTCACTGAGAAACTTGGAGATGCTCTCAAGGCTAAAGCAGGAACTAAAGCACTCAAGAAGCCTCGATTCAGGATTGAAGACAGGTATAAATTGAACTCGGTGTTGGAATGTACCTCTTCTTTATCGGCTGCTACGATGTCATGTTTGGAAAAAACCACTTCTTCATCTTTCTCTTTATCCAAGCAATCGCCTTCTTCATCATGGCATTTGGATATGTTGGAACTTTCGTTCCCAACTCCTAGAAGGACCTGGTGA

Protein sequence

>Msa1041820

MDHFSSTTTIPFALQGAKDDITMQISLIWSQIKAPLIVPLLRISVFLCLIMSVMMFIERVYMGVVITLVKLFGRKPEKRYKWEPIKDDIELGNSCYPMVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDHVAIFDADFQPEPDFLWRTVPFMVHNPEIGLIQARWKFVNSDECMMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVLEIIQNKKVSLWKKIHVIYSFFFVRKVIAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSVITLLNAVGTPRSLHLLVFWILFENVMSLHRAKATVIGLLEASRVNEWIVTEKLGDALKAKAGTKALKKPRFRIEDRYKLNSVLECTSSLSAATMSCLEKTTSSSFSLSKQSPSSSWHLDMLELSFPTPRRTW*