AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1090180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090180 MtrunA17_Chr7g0250371 90.526 285 27 0 1 285 503 787 0.0 538
Msa1090180 MtrunA17_Chr7g0250391 91.579 285 24 0 1 285 501 785 0.0 518
Msa1090180 MtrunA17_Chr7g0250331 84.965 286 42 1 1 285 524 809 4.09e-174 501
Msa1090180 MtrunA17_Chr7g0250441 84.561 285 44 0 1 285 1 285 5.07e-174 483
Msa1090180 MtrunA17_Chr7g0250411 84.211 285 45 0 1 285 502 786 1.01e-173 500
Msa1090180 MtrunA17_Chr7g0250481 83.158 285 48 0 1 285 516 800 3.38e-170 491
Msa1090180 MtrunA17_Chr5g0439271 63.958 283 98 4 1 282 322 601 1.15e-121 360
Msa1090180 MtrunA17_Chr7g0261701 58.974 273 104 7 11 282 24 289 2.25e-100 295
Msa1090180 MtrunA17_Chr4g0057461 53.147 286 127 7 1 282 346 628 1.14e-94 291
Msa1090180 MtrunA17_Chr4g0076611 58.394 274 104 8 11 282 428 693 1.65e-94 293
Msa1090180 MtrunA17_Chr4g0057471 53.793 290 118 8 1 282 427 708 2.64e-93 290
Msa1090180 MtrunA17_Chr4g0057531 51.748 286 132 6 1 283 495 777 2.13e-91 287
Msa1090180 MtrunA17_Chr4g0057481 52.448 286 130 6 1 283 408 690 4.18e-91 284
Msa1090180 MtrunA17_Chr3g0120521 52.555 274 125 5 11 283 501 770 8.60e-91 285
Msa1090180 MtrunA17_Chr4g0057491 50.699 286 135 6 1 283 340 622 1.60e-90 281
Msa1090180 MtrunA17_Chr4g0057511 51.399 286 133 6 1 283 334 616 2.24e-90 280
Msa1090180 MtrunA17_Chr5g0423261 51.049 286 134 6 1 283 340 622 4.75e-90 280
Msa1090180 MtrunA17_Chr5g0447171 47.664 321 108 7 12 285 203 510 1.83e-89 275
Msa1090180 MtrunA17_Chr4g0053781 47.719 285 139 6 6 283 474 755 5.15e-77 248
Msa1090180 MtrunA17_Chr8g0345971 46.897 290 143 6 1 282 472 758 1.02e-75 245
Msa1090180 MtrunA17_Chr2g0303881 47.405 289 141 6 1 282 441 725 2.32e-75 244
Msa1090180 MtrunA17_Chr3g0134621 46.875 288 137 6 6 280 449 733 1.30e-74 242
Msa1090180 MtrunA17_Chr1g0189251 45.734 293 141 8 1 282 468 753 2.03e-74 241
Msa1090180 MtrunA17_Chr4g0020651 45.645 287 146 6 6 285 476 759 9.39e-74 240
Msa1090180 MtrunA17_Chr5g0401511 44.948 287 148 6 6 285 480 763 1.03e-73 240
Msa1090180 MtrunA17_Chr8g0369891 46.290 283 136 5 3 283 485 753 2.17e-73 239
Msa1090180 MtrunA17_Chr2g0300751 44.211 285 153 5 1 280 487 770 1.28e-71 234
Msa1090180 MtrunA17_Chr4g0037221 44.483 290 148 6 6 284 482 769 4.77e-71 233
Msa1090180 MtrunA17_Chr7g0246461 48.561 278 133 9 13 282 464 739 6.52e-71 232
Msa1090180 MtrunA17_Chr5g0407701 47.203 286 135 8 1 283 478 750 2.08e-70 231
Msa1090180 MtrunA17_Chr8g0345981 44.898 294 143 8 1 282 471 757 3.08e-70 231
Msa1090180 MtrunA17_Chr1g0204321 44.523 283 148 6 6 282 497 776 4.74e-70 230
Msa1090180 MtrunA17_Chr8g0345991 45.329 289 139 9 6 282 472 753 7.36e-70 229
Msa1090180 MtrunA17_Chr8g0344331 44.755 286 142 7 9 283 495 775 7.38e-67 222
Msa1090180 MtrunA17_Chr4g0070391 44.912 285 141 8 6 280 471 749 9.31e-67 221
Msa1090180 MtrunA17_Chr1g0152771 43.000 300 146 8 3 280 464 760 9.38e-66 219
Msa1090180 MtrunA17_Chr4g0026641 45.714 280 143 7 6 282 480 753 2.37e-65 217
Msa1090180 MtrunA17_Chr7g0276151 45.361 291 147 7 1 282 468 755 2.78e-64 214
Msa1090180 MtrunA17_Chr8g0346361 42.857 287 146 9 5 284 223 498 6.34e-63 206
Msa1090180 MtrunA17_Chr1g0146251 44.876 283 139 7 7 283 464 735 7.09e-63 210
Msa1090180 MtrunA17_Chr3g0105451 42.308 286 140 8 6 282 9 278 1.19e-62 199
Msa1090180 MtrunA17_Chr8g0354741 42.086 278 150 8 11 283 363 634 1.69e-62 207
Msa1090180 MtrunA17_Chr7g0262161 45.051 293 138 9 6 282 475 760 2.04e-62 209
Msa1090180 MtrunA17_Chr3g0136151 43.007 286 150 9 6 282 480 761 5.66e-62 208
Msa1090180 MtrunA17_Chr8g0377961 41.812 287 152 7 1 283 500 775 1.07e-61 208
Msa1090180 MtrunA17_Chr3g0143251 42.857 287 148 9 6 282 484 764 1.23e-61 207
Msa1090180 MtrunA17_Chr1g0146271 43.110 283 144 7 7 283 462 733 3.24e-61 206
Msa1090180 MtrunA17_Chr8g0334521 41.259 286 148 9 7 284 462 735 6.01e-61 205
Msa1090180 MtrunA17_Chr7g0248871 43.706 286 150 8 5 282 481 763 7.45e-61 205
Msa1090180 MtrunA17_Chr8g0354771 41.727 278 154 6 11 283 490 764 2.13e-60 204
Msa1090180 MtrunA17_Chr1g0170081 41.696 283 148 8 7 283 460 731 7.32e-60 202
Msa1090180 MtrunA17_Chr2g0285121 43.554 287 146 7 4 282 504 782 3.33e-59 201
Msa1090180 MtrunA17_Chr7g0227991 42.014 288 145 10 7 285 462 736 5.42e-59 200
Msa1090180 MtrunA17_Chr2g0285111 43.206 287 147 7 4 282 507 785 8.23e-59 200
Msa1090180 MtrunA17_Chr7g0266051 41.993 281 144 7 10 282 436 705 8.87e-59 199
Msa1090180 MtrunA17_Chr2g0301031 43.411 258 129 8 32 283 1 247 1.06e-58 187
Msa1090180 MtrunA17_Chr8g0351011 44.086 279 136 9 12 282 485 751 1.09e-58 199
Msa1090180 MtrunA17_Chr5g0398241 44.170 283 141 9 6 282 482 753 1.18e-58 199
Msa1090180 MtrunA17_Chr5g0398401 43.706 286 144 9 6 285 482 756 1.62e-58 199
Msa1090180 MtrunA17_Chr4g0026661 43.307 254 135 7 32 282 12 259 2.07e-58 187
Msa1090180 MtrunA17_Chr4g0057061 44.014 284 141 9 6 282 502 774 2.55e-58 199
Msa1090180 MtrunA17_Chr8g0345961 42.069 290 156 6 1 282 471 756 2.60e-58 198
Msa1090180 MtrunA17_Chr8g0344971 42.599 277 143 10 19 282 486 759 2.73e-58 198
Msa1090180 MtrunA17_Chr6g0470851 41.608 286 148 10 7 284 457 731 6.39e-57 194
Msa1090180 MtrunA17_Chr7g0246451 41.135 282 143 8 13 284 479 747 1.36e-56 194
Msa1090180 MtrunA17_Chr5g0398351 42.958 284 143 10 6 282 1233 1504 4.73e-56 194
Msa1090180 MtrunA17_Chr5g0398351 42.606 284 144 10 6 282 462 733 1.05e-55 193
Msa1090180 MtrunA17_Chr2g0312861 42.857 259 131 8 32 284 1 248 5.97e-56 182
Msa1090180 MtrunA17_Chr1g0189561 41.667 288 156 8 5 282 475 760 1.48e-55 191
Msa1090180 MtrunA17_Chr6g0470881 41.958 286 147 10 7 284 457 731 2.40e-55 190
Msa1090180 MtrunA17_Chr5g0398331 40.636 283 151 9 6 282 479 750 4.93e-55 189
Msa1090180 MtrunA17_Chr8g0334491 40.210 286 141 9 7 283 464 728 8.66e-55 188
Msa1090180 MtrunA17_Chr6g0480721 41.367 278 140 9 13 282 337 599 7.11e-53 182
Msa1090180 MtrunA17_Chr5g0398311 40.283 283 152 9 6 282 475 746 1.79e-51 179
Msa1090180 MtrunA17_Chr3g0079971 37.329 292 160 9 1 283 455 732 4.66e-50 176
Msa1090180 MtrunA17_Chr4g0071871 40.000 290 147 11 10 283 536 814 1.29e-47 169
Msa1090180 MtrunA17_Chr2g0301011 47.879 165 77 3 7 171 326 481 1.22e-43 155
Msa1090180 MtrunA17_Chr2g0301921 41.204 216 111 7 74 283 1 206 3.31e-43 146
Msa1090180 MtrunA17_Chr2g0298601 38.947 285 149 12 11 280 537 811 6.83e-43 156
Msa1090180 MtrunA17_Chr3g0103081 49.315 146 70 4 141 284 1 144 3.34e-40 137
Msa1090180 MtrunA17_Chr8g0380961 37.500 288 150 11 13 282 570 845 8.24e-38 141
Msa1090180 MtrunA17_Chr7g0248861 48.571 140 71 1 5 143 483 622 1.16e-34 132
Msa1090180 MtrunA17_Chr5g0418921 51.111 135 64 2 1 134 1 134 4.92e-34 122
Msa1090180 MtrunA17_Chr2g0302951 36.949 295 149 14 13 285 562 841 1.84e-32 126
Msa1090180 MtrunA17_Chr4g0071191 38.043 184 95 5 13 191 57 226 3.66e-31 116
Msa1090180 MtrunA17_Chr4g0075331 30.662 287 168 11 13 282 465 737 9.03e-29 115
Msa1090180 MtrunA17_Chr4g0035881 50.000 108 51 1 1 105 210 317 2.63e-27 108
Msa1090180 MtrunA17_Chr8g0376841 52.632 95 44 1 12 106 489 582 2.78e-26 108
Msa1090180 MtrunA17_Chr8g0376851 40.491 163 87 6 128 282 11 171 4.64e-25 98.6
Msa1090180 MtrunA17_Chr3g0097061 46.729 107 49 2 66 172 332 430 1.14e-24 102
Msa1090180 MtrunA17_Chr5g0436031 37.576 165 92 7 125 282 20 180 8.35e-23 93.6
Msa1090180 MtrunA17_Chr3g0143231 51.648 91 42 2 15 105 1 89 3.67e-22 88.2
Msa1090180 MtrunA17_Chr3g0142971 48.276 87 43 2 15 101 1 85 6.37e-19 79.7
Msa1090180 MtrunA17_Chr3g0142961 40.000 125 66 5 125 240 13 137 1.70e-18 80.1
Msa1090180 MtrunA17_Chr3g0103071 56.944 72 30 1 1 72 213 283 3.15e-16 77.0
Msa1090180 MtrunA17_Chr3g0077671 48.649 74 37 1 63 135 235 308 2.14e-14 72.0
Msa1090180 MtrunA17_Chr5g0398341 45.556 90 48 1 74 163 1 89 8.87e-14 65.9
Msa1090180 MtrunA17_Chr8g0346961 34.746 118 69 4 103 214 1 116 4.16e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090180 AT5G59810.1 55.636 275 115 6 11 283 506 775 1.92e-96 300
Msa1090180 AT2G04160.1 55.439 285 122 5 1 283 490 771 2.57e-95 297
Msa1090180 AT5G67360.1 47.331 281 144 3 6 283 476 755 6.08e-81 259
Msa1090180 AT2G05920.1 48.214 280 138 5 6 280 470 747 2.61e-79 255
Msa1090180 AT5G45650.2 44.637 289 140 8 4 282 510 788 6.48e-69 228
Msa1090180 AT5G45650.1 44.637 289 140 8 4 282 510 788 6.48e-69 228
Msa1090180 AT4G26330.2 44.251 287 149 7 4 282 438 721 1.29e-68 226
Msa1090180 AT4G26330.1 44.251 287 149 7 4 282 452 735 1.29e-68 226
Msa1090180 AT3G14240.1 43.945 289 148 9 6 282 483 769 7.63e-66 219
Msa1090180 AT3G14067.1 41.781 292 154 9 6 283 479 768 3.59e-65 218
Msa1090180 AT5G51750.1 43.310 284 151 6 6 282 494 774 1.06e-64 216
Msa1090180 AT4G34980.1 43.299 291 151 9 6 284 472 760 2.67e-64 215
Msa1090180 AT1G20160.2 44.523 283 143 8 12 285 448 725 1.46e-63 213
Msa1090180 AT1G20160.1 44.523 283 143 8 12 285 487 764 1.75e-63 213
Msa1090180 AT4G00230.1 45.196 281 131 10 12 282 476 743 1.17e-62 210
Msa1090180 AT1G32970.1 44.014 284 146 6 5 285 452 725 4.21e-62 209
Msa1090180 AT1G01900.1 46.809 282 135 9 13 282 493 771 2.45e-61 207
Msa1090180 AT5G58840.1 43.554 287 144 9 3 282 431 706 1.40e-60 204
Msa1090180 AT4G10520.1 42.014 288 154 5 1 285 470 747 2.60e-60 204
Msa1090180 AT5G59100.1 45.878 279 132 9 13 282 469 737 1.40e-59 202
Msa1090180 AT1G04110.1 43.493 292 149 9 6 285 486 773 1.50e-59 202
Msa1090180 AT4G10550.4 42.105 285 151 7 4 285 440 713 3.94e-59 201
Msa1090180 AT4G10550.2 42.105 285 151 7 4 285 440 713 3.94e-59 201
Msa1090180 AT4G10550.1 42.105 285 151 7 4 285 496 769 6.37e-59 201
Msa1090180 AT4G10550.3 42.105 285 151 7 4 285 512 785 7.86e-59 201
Msa1090180 AT4G21640.1 42.657 286 152 5 1 283 452 728 1.17e-58 199
Msa1090180 AT5G03620.1 42.424 297 142 11 5 284 476 760 1.19e-58 200
Msa1090180 AT5G59120.1 42.414 290 143 10 3 282 452 727 3.15e-58 198
Msa1090180 AT4G10540.1 41.404 285 154 6 4 285 492 766 3.41e-58 199
Msa1090180 AT3G46850.1 43.206 287 143 9 3 282 461 734 7.86e-58 197
Msa1090180 AT5G11940.1 41.724 290 154 8 1 285 476 755 1.12e-57 197
Msa1090180 AT4G21630.1 42.308 286 153 5 1 283 478 754 1.13e-57 197
Msa1090180 AT5G59190.1 43.841 276 138 7 11 280 422 686 4.25e-57 194
Msa1090180 AT5G58820.1 44.056 286 133 10 8 282 431 700 4.76e-57 194
Msa1090180 AT5G59090.1 42.069 290 144 10 3 282 453 728 5.70e-57 195
Msa1090180 AT5G59090.3 42.069 290 144 10 3 282 451 726 6.11e-57 195
Msa1090180 AT5G59090.2 42.069 290 139 10 3 282 453 723 1.17e-56 194
Msa1090180 AT4G10510.2 41.404 285 154 7 4 285 423 697 4.71e-56 192
Msa1090180 AT3G46840.1 44.444 288 138 11 3 282 461 734 4.76e-56 192
Msa1090180 AT5G58830.1 42.238 277 143 8 13 282 439 705 6.24e-56 192
Msa1090180 AT1G66220.1 40.484 289 150 8 1 285 477 747 6.80e-56 192
Msa1090180 AT4G10510.4 41.404 285 154 7 4 285 438 712 7.52e-56 191
Msa1090180 AT4G21650.1 40.210 286 159 5 1 283 485 761 8.64e-56 192
Msa1090180 AT4G10510.1 41.404 285 154 7 4 285 482 756 1.06e-55 192
Msa1090180 AT4G10510.3 41.404 285 154 7 4 285 494 768 1.15e-55 192
Msa1090180 AT1G32950.2 40.702 285 156 6 4 285 439 713 1.52e-55 191
Msa1090180 AT1G32940.4 41.404 285 154 5 4 285 440 714 1.98e-55 191
Msa1090180 AT1G32940.2 41.404 285 154 5 4 285 440 714 1.98e-55 191
Msa1090180 AT1G32950.1 40.702 285 156 6 4 285 490 764 1.99e-55 191
Msa1090180 AT5G59130.3 44.043 277 135 8 13 282 423 686 3.18e-55 189
Msa1090180 AT1G32940.1 41.404 285 154 5 4 285 491 765 4.16e-55 190
Msa1090180 AT5G59130.1 44.043 277 135 8 13 282 458 721 4.59e-55 189
Msa1090180 AT5G59130.4 44.043 277 135 8 13 282 462 725 4.74e-55 189
Msa1090180 AT5G59130.2 44.043 277 135 8 13 282 452 715 4.87e-55 189
Msa1090180 AT1G32960.1 39.583 288 161 6 1 285 491 768 3.59e-54 187
Msa1090180 AT1G66210.1 41.034 290 150 10 1 285 480 753 2.97e-53 185
Msa1090180 AT5G45640.1 38.851 296 131 8 6 282 487 751 1.71e-52 183
Msa1090180 AT4G21323.1 40.550 291 155 9 1 285 518 796 7.33e-52 181
Msa1090180 AT4G21326.1 40.351 285 159 5 1 283 413 688 1.13e-51 180
Msa1090180 AT1G20150.1 39.590 293 154 10 9 285 488 773 1.95e-51 180
Msa1090180 AT4G10530.1 38.542 288 151 7 1 285 474 738 3.98e-49 173
Msa1090180 AT4G15040.2 42.086 278 141 9 13 282 420 685 6.69e-48 169
Msa1090180 AT4G15040.1 42.086 278 141 9 13 282 420 685 6.69e-48 169
Msa1090180 AT5G67090.1 38.462 286 125 12 5 271 462 715 6.19e-44 159
Msa1090180 AT1G32980.1 45.455 187 98 4 70 253 3 188 2.58e-43 146
Msa1090180 AT2G39850.1 37.457 291 146 11 14 282 489 765 4.47e-43 157
Msa1090180 AT2G19170.1 36.860 293 147 13 10 280 532 808 8.18e-42 153
Msa1090180 AT2G19170.2 36.860 293 147 13 10 280 532 808 8.18e-42 153
Msa1090180 AT4G30020.3 36.120 299 153 13 10 285 533 816 1.20e-41 153
Msa1090180 AT4G30020.1 36.120 299 153 13 10 285 533 816 1.20e-41 153
Msa1090180 AT4G30020.4 36.120 299 153 13 10 285 533 816 1.20e-41 153
Msa1090180 AT4G30020.2 36.120 299 153 13 10 285 533 816 1.20e-41 153
Msa1090180 AT4G20430.2 35.616 292 156 12 13 285 549 827 2.64e-34 132
Msa1090180 AT4G20430.3 35.616 292 156 12 13 285 573 851 2.87e-34 132
Msa1090180 AT4G20430.1 35.616 292 156 12 13 285 573 851 2.87e-34 132
Msa1090180 AT1G62340.1 33.216 283 168 9 13 283 557 830 2.15e-33 129
Msa1090180 AT5G44530.1 35.052 291 159 13 13 285 558 836 3.82e-30 120
Msa1090180 AT5G03620.2 56.863 102 43 1 5 106 476 576 1.92e-29 117
Msa1090180 AT1G30600.1 35.593 236 124 8 2 217 532 759 8.46e-29 116
Msa1090180 AT5G44530.2 32.595 316 158 14 13 285 558 861 1.43e-26 109
Msa1090180 AT5G58840.3 58.333 96 39 1 11 106 438 532 1.44e-26 108
Msa1090180 AT4G00230.2 51.020 98 47 1 12 109 476 572 1.85e-25 106
Msa1090180 AT5G59110.1 39.506 162 87 7 130 282 7 166 3.92e-23 93.6
Msa1090180 AT1G32940.3 49.038 104 45 1 4 107 491 586 1.89e-18 85.5

Find 65 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACATTTAAACCAATATT+TGG 0.166325 7_3:+3949636 None:intergenic
TTGAACTTCTTATGTGCTTC+TGG 0.222659 7_3:-3949759 Msa1090180:CDS
TCCATTGCAGTTCTCCAAAT+TGG 0.226476 7_3:+3949436 None:intergenic
ATGTCTTGCCCTCATGTTGC+TGG 0.236468 7_3:-3950696 Msa1090180:CDS
TGTTTATGACCTAGGGATTA+AGG 0.261675 7_3:-3949787 Msa1090180:CDS
TCAATCACATTACCAAATAT+TGG 0.277548 7_3:-3949648 Msa1090180:CDS
ACTGCAAATCCATTTGCTTA+TGG 0.284883 7_3:-3949852 Msa1090180:CDS
TCAAAACACTTCATCTGAAT+TGG 0.287435 7_3:-3950659 Msa1090180:CDS
AATCCATTTGCTTATGGTTC+AGG 0.301567 7_3:-3949846 Msa1090180:CDS
TCCTTGAATTTCAAGAAAAT+AGG 0.302304 7_3:-3949519 Msa1090180:CDS
TATAACACCTTTAGTATTGA+TGG 0.332691 7_3:+3950957 None:intergenic
CATTTGCGTTGAACAGTAAT+GGG 0.333841 7_3:+3949387 None:intergenic
AACATGACATTTACTTGTTC+AGG 0.339929 7_3:-3949702 Msa1090180:CDS
CCTCATGTTGCTGGGACTGC+TGG 0.348087 7_3:-3950687 Msa1090180:CDS
CCAAGGGGAAAATACCAATT+TGG 0.360143 7_3:-3949450 Msa1090180:CDS
GTTCCTTGCATTACATTGAA+TGG 0.365594 7_3:+3950723 None:intergenic
TCCTGGGTCCATTGCACTGT+TGG 0.382552 7_3:+3949812 None:intergenic
GATGAGTATGAAGCCATAAC+TGG 0.406220 7_3:+3951002 None:intergenic
TTCCTTGCATTACATTGAAT+GGG 0.423057 7_3:+3950724 None:intergenic
TCATTTGCGTTGAACAGTAA+TGG 0.436775 7_3:+3949386 None:intergenic
TGCATCACTTATAGGCTTGT+TGG 0.444955 7_3:+3949887 None:intergenic
TTCTTGAAATTCAAGGAACT+TGG 0.447012 7_3:+3949525 None:intergenic
TTTGCAAAAGTCCAATTGCC+TGG 0.448086 7_3:-3949567 Msa1090180:CDS
CCTGGGTCCATTGCACTGTT+GGG 0.454525 7_3:+3949813 None:intergenic
CCTAGGTCATAAACAAGTCC+TGG 0.461631 7_3:+3949795 None:intergenic
TAAGTGCTGAAATGAGTTGT+TGG 0.464449 7_3:+3949730 None:intergenic
ACACCGGGCGCCGTTACATC+AGG 0.469665 7_3:+3950816 None:intergenic
ATATTTGGTAATGTGATTGA+AGG 0.474775 7_3:+3949651 None:intergenic
CAGCCTGATGTAACGGCGCC+CGG 0.476551 7_3:-3950819 Msa1090180:CDS
TGCACTTGCAAACAATGAAT+AGG 0.477779 7_3:+3950779 None:intergenic
CCAGGACTTGTTTATGACCT+AGG 0.481515 7_3:-3949795 Msa1090180:CDS
CTCGTATAGTCACCAATGTT+GGG 0.482371 7_3:-3949605 Msa1090180:CDS
GGAGAACTGCAATGGACAAA+TGG 0.483947 7_3:-3949429 Msa1090180:CDS
AAGAAAGCCAGCTCCAGTTA+TGG 0.487825 7_3:-3951015 Msa1090180:CDS
TGTCCTGAACCATAAGCAAA+TGG 0.492197 7_3:+3949843 None:intergenic
CAGGACTTGTTTATGACCTA+GGG 0.508407 7_3:-3949794 Msa1090180:CDS
TGTCTTGCCCTCATGTTGCT+GGG 0.508905 7_3:-3950695 Msa1090180:CDS
TTTGCAAAATATGTACTTGG+TGG 0.517980 7_3:+3949582 None:intergenic
CAAATGGAAAGCATATTGTA+AGG 0.521262 7_3:-3949413 Msa1090180:CDS
TATGAAGCCATAACTGGAGC+TGG 0.522115 7_3:+3951008 None:intergenic
TCAAGTAATCCTTAATCCCT+AGG 0.522854 7_3:+3949778 None:intergenic
TTTGTTTCAGCCTGATGTAA+CGG 0.526895 7_3:-3950826 Msa1090180:intron
ACTCGTATAGTCACCAATGT+TGG 0.529854 7_3:-3949606 Msa1090180:CDS
CTTGTTGGTGTTATCTCTTG+TGG 0.532291 7_3:+3949902 None:intergenic
TTCCCATTCAATGTAATGCA+AGG 0.545135 7_3:-3950726 Msa1090180:CDS
ACCAATTTGGAGAACTGCAA+TGG 0.549150 7_3:-3949437 Msa1090180:CDS
AATTCAGCCATCAATACTAA+AGG 0.549273 7_3:-3950964 Msa1090180:intron
AAGCAACAAGTGTGACTCCA+AGG 0.551446 7_3:-3949467 Msa1090180:CDS
ATTGATGGCTGAATTTCACT+TGG 0.567441 7_3:+3950972 None:intergenic
ATAGCTGATTTAATAGCCGC+AGG 0.576830 7_3:+3950633 None:intergenic
CTAGGTCATAAACAAGTCCT+GGG 0.579565 7_3:+3949796 None:intergenic
AGCAACAAGTGTGACTCCAA+GGG 0.583540 7_3:-3949466 Msa1090180:CDS
TATTCAACCCAACAGTGCAA+TGG 0.598990 7_3:-3949820 Msa1090180:CDS
GGCTGCAAGTATGTTCACAC+CGG 0.606481 7_3:+3950800 None:intergenic
CCAGCAGTCCCAGCAACATG+AGG 0.615901 7_3:+3950687 None:intergenic
AAATCAGCTATCATGACCAC+CGG 0.620394 7_3:-3950621 Msa1090180:intron
TGTACTTGGTGGCCCAACAT+TGG 0.624573 7_3:+3949593 None:intergenic
CCCAACAGTGCAATGGACCC+AGG 0.625551 7_3:-3949813 Msa1090180:CDS
CAGCAGTCCCAGCAACATGA+GGG 0.631088 7_3:+3950688 None:intergenic
ATGGCTTCATACTCATCTAG+AGG 0.632404 7_3:-3950996 Msa1090180:CDS
AAACCTCGACGATTGTCTGT+TGG 0.633358 7_3:+3950747 None:intergenic
TCATCTGAATTGGAGTCCTG+CGG 0.650874 7_3:-3950649 Msa1090180:CDS
GCTGCAAGTATGTTCACACC+GGG 0.652846 7_3:+3950801 None:intergenic
GCAACAAGTGTGACTCCAAG+GGG 0.669485 7_3:-3949465 Msa1090180:CDS
TTACCAACAGACAATCGTCG+AGG 0.726503 7_3:-3950750 Msa1090180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAATCATAATTGATAT+TGG - chr7_3:3949874-3949893 Msa1090180:CDS 15.0%
!! ATGATTTCATATATATGATT+AGG + chr7_3:3949979-3949998 None:intergenic 15.0%
!! ATCATATATAACAATTGTAT+AGG - chr7_3:3950444-3950463 Msa1090180:intron 15.0%
!! TATACAATCATAATTGATAT+TGG - chr7_3:3949874-3949893 Msa1090180:CDS 15.0%
!! ATGATTTCATATATATGATT+AGG + chr7_3:3949979-3949998 None:intergenic 15.0%
!! ATCATATATAACAATTGTAT+AGG - chr7_3:3950444-3950463 Msa1090180:intron 15.0%
!! GACTATTATCAAGATTATAT+AGG - chr7_3:3949936-3949955 Msa1090180:intron 20.0%
!!! TTCATCTTCTATTTTAACAT+AGG + chr7_3:3950187-3950206 None:intergenic 20.0%
!! ACAACATTTAAACCAATATT+TGG + chr7_3:3950794-3950813 None:intergenic 20.0%
!! GACTATTATCAAGATTATAT+AGG - chr7_3:3949936-3949955 Msa1090180:intron 20.0%
!!! TTCATCTTCTATTTTAACAT+AGG + chr7_3:3950187-3950206 None:intergenic 20.0%
!! ACAACATTTAAACCAATATT+TGG + chr7_3:3950794-3950813 None:intergenic 20.0%
!! TATAACACCTTTAGTATTGA+TGG + chr7_3:3949473-3949492 None:intergenic 25.0%
!!! CTGTCTTTATTTCTATTCAA+TGG - chr7_3:3949547-3949566 Msa1090180:CDS 25.0%
! AATGTTGAAGAGGATAAAAT+TGG - chr7_3:3950082-3950101 Msa1090180:intron 25.0%
!!! ATATTTGGTAATGTGATTGA+AGG + chr7_3:3950779-3950798 None:intergenic 25.0%
! TCAATCACATTACCAAATAT+TGG - chr7_3:3950779-3950798 Msa1090180:CDS 25.0%
!! ACTTTTGCAAAATATGTACT+TGG + chr7_3:3950851-3950870 None:intergenic 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG - chr7_3:3950908-3950927 Msa1090180:intron 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG + chr7_3:3950912-3950931 None:intergenic 25.0%
!! TATAACACCTTTAGTATTGA+TGG + chr7_3:3949473-3949492 None:intergenic 25.0%
!!! CTGTCTTTATTTCTATTCAA+TGG - chr7_3:3949547-3949566 Msa1090180:CDS 25.0%
! AATGTTGAAGAGGATAAAAT+TGG - chr7_3:3950082-3950101 Msa1090180:intron 25.0%
!!! ATATTTGGTAATGTGATTGA+AGG + chr7_3:3950779-3950798 None:intergenic 25.0%
! TCAATCACATTACCAAATAT+TGG - chr7_3:3950779-3950798 Msa1090180:CDS 25.0%
!! ACTTTTGCAAAATATGTACT+TGG + chr7_3:3950851-3950870 None:intergenic 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG - chr7_3:3950908-3950927 Msa1090180:intron 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG + chr7_3:3950912-3950931 None:intergenic 25.0%
AATTCAGCCATCAATACTAA+AGG - chr7_3:3949463-3949482 Msa1090180:CDS 30.0%
TTCCTTGCATTACATTGAAT+GGG + chr7_3:3949706-3949725 None:intergenic 30.0%
TCAAAACACTTCATCTGAAT+TGG - chr7_3:3949768-3949787 Msa1090180:CDS 30.0%
TTCATTGATCAATGTTGAAG+AGG - chr7_3:3950072-3950091 Msa1090180:intron 30.0%
CTCACATTTATCACTAGATT+TGG - chr7_3:3950144-3950163 Msa1090180:intron 30.0%
! TATCACTAGATTTGGTCATT+TGG - chr7_3:3950152-3950171 Msa1090180:intron 30.0%
GATAATAAGTGTGATTGTAG+AGG + chr7_3:3950415-3950434 None:intergenic 30.0%
! TTTTCGAATGCATCACTTAT+AGG + chr7_3:3950551-3950570 None:intergenic 30.0%
AACATGACATTTACTTGTTC+AGG - chr7_3:3950725-3950744 Msa1090180:CDS 30.0%
TTTGCAAAATATGTACTTGG+TGG + chr7_3:3950848-3950867 None:intergenic 30.0%
! CAATTTTATATCCAGGCAAT+TGG + chr7_3:3950874-3950893 None:intergenic 30.0%
! ACAACAGCAATTTTATATCC+AGG + chr7_3:3950881-3950900 None:intergenic 30.0%
TTCTTGAAATTCAAGGAACT+TGG + chr7_3:3950905-3950924 None:intergenic 30.0%
! CAAATGGAAAGCATATTGTA+AGG - chr7_3:3951014-3951033 Msa1090180:CDS 30.0%
AATTCAGCCATCAATACTAA+AGG - chr7_3:3949463-3949482 Msa1090180:CDS 30.0%
TTCCTTGCATTACATTGAAT+GGG + chr7_3:3949706-3949725 None:intergenic 30.0%
TCAAAACACTTCATCTGAAT+TGG - chr7_3:3949768-3949787 Msa1090180:CDS 30.0%
TTCATTGATCAATGTTGAAG+AGG - chr7_3:3950072-3950091 Msa1090180:intron 30.0%
CTCACATTTATCACTAGATT+TGG - chr7_3:3950144-3950163 Msa1090180:intron 30.0%
! TATCACTAGATTTGGTCATT+TGG - chr7_3:3950152-3950171 Msa1090180:intron 30.0%
GATAATAAGTGTGATTGTAG+AGG + chr7_3:3950415-3950434 None:intergenic 30.0%
! TTTTCGAATGCATCACTTAT+AGG + chr7_3:3950551-3950570 None:intergenic 30.0%
AACATGACATTTACTTGTTC+AGG - chr7_3:3950725-3950744 Msa1090180:CDS 30.0%
TTTGCAAAATATGTACTTGG+TGG + chr7_3:3950848-3950867 None:intergenic 30.0%
! CAATTTTATATCCAGGCAAT+TGG + chr7_3:3950874-3950893 None:intergenic 30.0%
! ACAACAGCAATTTTATATCC+AGG + chr7_3:3950881-3950900 None:intergenic 30.0%
TTCTTGAAATTCAAGGAACT+TGG + chr7_3:3950905-3950924 None:intergenic 30.0%
! CAAATGGAAAGCATATTGTA+AGG - chr7_3:3951014-3951033 Msa1090180:CDS 30.0%
TCACAAGCAAAAACACTCTT+TGG - chr7_3:3949389-3949408 Msa1090180:CDS 35.0%
! ATTGATGGCTGAATTTCACT+TGG + chr7_3:3949458-3949477 None:intergenic 35.0%
TTTGTTTCAGCCTGATGTAA+CGG - chr7_3:3949601-3949620 Msa1090180:CDS 35.0%
TGCACTTGCAAACAATGAAT+AGG + chr7_3:3949651-3949670 None:intergenic 35.0%
TTCCCATTCAATGTAATGCA+AGG - chr7_3:3949701-3949720 Msa1090180:CDS 35.0%
GTTCCTTGCATTACATTGAA+TGG + chr7_3:3949707-3949726 None:intergenic 35.0%
TAGAGTGAGAGAGAAAATAC+CGG + chr7_3:3949828-3949847 None:intergenic 35.0%
GTTGAAGAGGATAAAATTGG+TGG - chr7_3:3950085-3950104 Msa1090180:intron 35.0%
AGAAGATGAAACTCCATTGA+TGG - chr7_3:3950197-3950216 Msa1090180:intron 35.0%
! AAGCTTTTCTCTTCCATCAA+TGG + chr7_3:3950213-3950232 None:intergenic 35.0%
GTTAGAAAACAGCTAACAAG+CGG - chr7_3:3950362-3950381 Msa1090180:intron 35.0%
TGTGATTGTAGAGGTTACTT+GGG + chr7_3:3950406-3950425 None:intergenic 35.0%
ACTGCAAATCCATTTGCTTA+TGG - chr7_3:3950575-3950594 Msa1090180:intron 35.0%
AATCCATTTGCTTATGGTTC+AGG - chr7_3:3950581-3950600 Msa1090180:intron 35.0%
TGTTTATGACCTAGGGATTA+AGG - chr7_3:3950640-3950659 Msa1090180:CDS 35.0%
TCAAGTAATCCTTAATCCCT+AGG + chr7_3:3950652-3950671 None:intergenic 35.0%
TTGAACTTCTTATGTGCTTC+TGG - chr7_3:3950668-3950687 Msa1090180:CDS 35.0%
!! TAAGTGCTGAAATGAGTTGT+TGG + chr7_3:3950700-3950719 None:intergenic 35.0%
CATTTGCGTTGAACAGTAAT+GGG + chr7_3:3951043-3951062 None:intergenic 35.0%
TCATTTGCGTTGAACAGTAA+TGG + chr7_3:3951044-3951063 None:intergenic 35.0%
TCACAAGCAAAAACACTCTT+TGG - chr7_3:3949389-3949408 Msa1090180:CDS 35.0%
! ATTGATGGCTGAATTTCACT+TGG + chr7_3:3949458-3949477 None:intergenic 35.0%
TTTGTTTCAGCCTGATGTAA+CGG - chr7_3:3949601-3949620 Msa1090180:CDS 35.0%
TGCACTTGCAAACAATGAAT+AGG + chr7_3:3949651-3949670 None:intergenic 35.0%
TTCCCATTCAATGTAATGCA+AGG - chr7_3:3949701-3949720 Msa1090180:CDS 35.0%
GTTCCTTGCATTACATTGAA+TGG + chr7_3:3949707-3949726 None:intergenic 35.0%
TAGAGTGAGAGAGAAAATAC+CGG + chr7_3:3949828-3949847 None:intergenic 35.0%
GTTGAAGAGGATAAAATTGG+TGG - chr7_3:3950085-3950104 Msa1090180:intron 35.0%
AGAAGATGAAACTCCATTGA+TGG - chr7_3:3950197-3950216 Msa1090180:intron 35.0%
! AAGCTTTTCTCTTCCATCAA+TGG + chr7_3:3950213-3950232 None:intergenic 35.0%
GTTAGAAAACAGCTAACAAG+CGG - chr7_3:3950362-3950381 Msa1090180:intron 35.0%
TGTGATTGTAGAGGTTACTT+GGG + chr7_3:3950406-3950425 None:intergenic 35.0%
ACTGCAAATCCATTTGCTTA+TGG - chr7_3:3950575-3950594 Msa1090180:intron 35.0%
AATCCATTTGCTTATGGTTC+AGG - chr7_3:3950581-3950600 Msa1090180:intron 35.0%
TGTTTATGACCTAGGGATTA+AGG - chr7_3:3950640-3950659 Msa1090180:CDS 35.0%
TCAAGTAATCCTTAATCCCT+AGG + chr7_3:3950652-3950671 None:intergenic 35.0%
TTGAACTTCTTATGTGCTTC+TGG - chr7_3:3950668-3950687 Msa1090180:CDS 35.0%
!! TAAGTGCTGAAATGAGTTGT+TGG + chr7_3:3950700-3950719 None:intergenic 35.0%
CATTTGCGTTGAACAGTAAT+GGG + chr7_3:3951043-3951062 None:intergenic 35.0%
TCATTTGCGTTGAACAGTAA+TGG + chr7_3:3951044-3951063 None:intergenic 35.0%
GATGAGTATGAAGCCATAAC+TGG + chr7_3:3949428-3949447 None:intergenic 40.0%
ATGGCTTCATACTCATCTAG+AGG - chr7_3:3949431-3949450 Msa1090180:CDS 40.0%
! ATAGCTGATTTAATAGCCGC+AGG + chr7_3:3949797-3949816 None:intergenic 40.0%
AAATCAGCTATCATGACCAC+CGG - chr7_3:3949806-3949825 Msa1090180:CDS 40.0%
GTGTGATTGTAGAGGTTACT+TGG + chr7_3:3950407-3950426 None:intergenic 40.0%
!! CTTGTTGGTGTTATCTCTTG+TGG + chr7_3:3950528-3950547 None:intergenic 40.0%
TGCATCACTTATAGGCTTGT+TGG + chr7_3:3950543-3950562 None:intergenic 40.0%
TGTCCTGAACCATAAGCAAA+TGG + chr7_3:3950587-3950606 None:intergenic 40.0%
TATTCAACCCAACAGTGCAA+TGG - chr7_3:3950607-3950626 Msa1090180:intron 40.0%
CTAGGTCATAAACAAGTCCT+GGG + chr7_3:3950634-3950653 None:intergenic 40.0%
! CAGGACTTGTTTATGACCTA+GGG - chr7_3:3950633-3950652 Msa1090180:CDS 40.0%
ACTCGTATAGTCACCAATGT+TGG - chr7_3:3950821-3950840 Msa1090180:intron 40.0%
CTCGTATAGTCACCAATGTT+GGG - chr7_3:3950822-3950841 Msa1090180:intron 40.0%
TTTGCAAAAGTCCAATTGCC+TGG - chr7_3:3950860-3950879 Msa1090180:intron 40.0%
! CCAAATTGGTATTTTCCCCT+TGG + chr7_3:3950980-3950999 None:intergenic 40.0%
CCAAGGGGAAAATACCAATT+TGG - chr7_3:3950977-3950996 Msa1090180:CDS 40.0%
ACCAATTTGGAGAACTGCAA+TGG - chr7_3:3950990-3951009 Msa1090180:CDS 40.0%
TCCATTGCAGTTCTCCAAAT+TGG + chr7_3:3950994-3951013 None:intergenic 40.0%
GATGAGTATGAAGCCATAAC+TGG + chr7_3:3949428-3949447 None:intergenic 40.0%
ATGGCTTCATACTCATCTAG+AGG - chr7_3:3949431-3949450 Msa1090180:CDS 40.0%
! ATAGCTGATTTAATAGCCGC+AGG + chr7_3:3949797-3949816 None:intergenic 40.0%
AAATCAGCTATCATGACCAC+CGG - chr7_3:3949806-3949825 Msa1090180:CDS 40.0%
GTGTGATTGTAGAGGTTACT+TGG + chr7_3:3950407-3950426 None:intergenic 40.0%
!! CTTGTTGGTGTTATCTCTTG+TGG + chr7_3:3950528-3950547 None:intergenic 40.0%
TGCATCACTTATAGGCTTGT+TGG + chr7_3:3950543-3950562 None:intergenic 40.0%
TGTCCTGAACCATAAGCAAA+TGG + chr7_3:3950587-3950606 None:intergenic 40.0%
TATTCAACCCAACAGTGCAA+TGG - chr7_3:3950607-3950626 Msa1090180:intron 40.0%
CTAGGTCATAAACAAGTCCT+GGG + chr7_3:3950634-3950653 None:intergenic 40.0%
! CAGGACTTGTTTATGACCTA+GGG - chr7_3:3950633-3950652 Msa1090180:CDS 40.0%
ACTCGTATAGTCACCAATGT+TGG - chr7_3:3950821-3950840 Msa1090180:intron 40.0%
CTCGTATAGTCACCAATGTT+GGG - chr7_3:3950822-3950841 Msa1090180:intron 40.0%
TTTGCAAAAGTCCAATTGCC+TGG - chr7_3:3950860-3950879 Msa1090180:intron 40.0%
! CCAAATTGGTATTTTCCCCT+TGG + chr7_3:3950980-3950999 None:intergenic 40.0%
CCAAGGGGAAAATACCAATT+TGG - chr7_3:3950977-3950996 Msa1090180:CDS 40.0%
ACCAATTTGGAGAACTGCAA+TGG - chr7_3:3950990-3951009 Msa1090180:CDS 40.0%
TCCATTGCAGTTCTCCAAAT+TGG + chr7_3:3950994-3951013 None:intergenic 40.0%
AAGAAAGCCAGCTCCAGTTA+TGG - chr7_3:3949412-3949431 Msa1090180:CDS 45.0%
TATGAAGCCATAACTGGAGC+TGG + chr7_3:3949422-3949441 None:intergenic 45.0%
TTACCAACAGACAATCGTCG+AGG - chr7_3:3949677-3949696 Msa1090180:CDS 45.0%
AAACCTCGACGATTGTCTGT+TGG + chr7_3:3949683-3949702 None:intergenic 45.0%
TCATCTGAATTGGAGTCCTG+CGG - chr7_3:3949778-3949797 Msa1090180:CDS 45.0%
AGTGAGAGAGAAAATACCGG+TGG + chr7_3:3949825-3949844 None:intergenic 45.0%
TCTCTCTCACTCTACACACA+AGG - chr7_3:3949834-3949853 Msa1090180:CDS 45.0%
ATTGTAGAGGTTACTTGGGC+AGG + chr7_3:3950402-3950421 None:intergenic 45.0%
TATCTCTTGTGGTTGCTGCA+AGG + chr7_3:3950517-3950536 None:intergenic 45.0%
CCTAGGTCATAAACAAGTCC+TGG + chr7_3:3950635-3950654 None:intergenic 45.0%
! CCAGGACTTGTTTATGACCT+AGG - chr7_3:3950632-3950651 Msa1090180:CDS 45.0%
AAGCAACAAGTGTGACTCCA+AGG - chr7_3:3950960-3950979 Msa1090180:intron 45.0%
AGCAACAAGTGTGACTCCAA+GGG - chr7_3:3950961-3950980 Msa1090180:intron 45.0%
GGAGAACTGCAATGGACAAA+TGG - chr7_3:3950998-3951017 Msa1090180:CDS 45.0%
AAGAAAGCCAGCTCCAGTTA+TGG - chr7_3:3949412-3949431 Msa1090180:CDS 45.0%
TATGAAGCCATAACTGGAGC+TGG + chr7_3:3949422-3949441 None:intergenic 45.0%
TTACCAACAGACAATCGTCG+AGG - chr7_3:3949677-3949696 Msa1090180:CDS 45.0%
AAACCTCGACGATTGTCTGT+TGG + chr7_3:3949683-3949702 None:intergenic 45.0%
TCATCTGAATTGGAGTCCTG+CGG - chr7_3:3949778-3949797 Msa1090180:CDS 45.0%
AGTGAGAGAGAAAATACCGG+TGG + chr7_3:3949825-3949844 None:intergenic 45.0%
TCTCTCTCACTCTACACACA+AGG - chr7_3:3949834-3949853 Msa1090180:CDS 45.0%
ATTGTAGAGGTTACTTGGGC+AGG + chr7_3:3950402-3950421 None:intergenic 45.0%
TATCTCTTGTGGTTGCTGCA+AGG + chr7_3:3950517-3950536 None:intergenic 45.0%
CCTAGGTCATAAACAAGTCC+TGG + chr7_3:3950635-3950654 None:intergenic 45.0%
! CCAGGACTTGTTTATGACCT+AGG - chr7_3:3950632-3950651 Msa1090180:CDS 45.0%
AAGCAACAAGTGTGACTCCA+AGG - chr7_3:3950960-3950979 Msa1090180:intron 45.0%
AGCAACAAGTGTGACTCCAA+GGG - chr7_3:3950961-3950980 Msa1090180:intron 45.0%
GGAGAACTGCAATGGACAAA+TGG - chr7_3:3950998-3951017 Msa1090180:CDS 45.0%
GCTGCAAGTATGTTCACACC+GGG + chr7_3:3949629-3949648 None:intergenic 50.0%
GGCTGCAAGTATGTTCACAC+CGG + chr7_3:3949630-3949649 None:intergenic 50.0%
ATGTCTTGCCCTCATGTTGC+TGG - chr7_3:3949731-3949750 Msa1090180:CDS 50.0%
TGTCTTGCCCTCATGTTGCT+GGG - chr7_3:3949732-3949751 Msa1090180:CDS 50.0%
! TGTACTTGGTGGCCCAACAT+TGG + chr7_3:3950837-3950856 None:intergenic 50.0%
GCAACAAGTGTGACTCCAAG+GGG - chr7_3:3950962-3950981 Msa1090180:intron 50.0%
GCTGCAAGTATGTTCACACC+GGG + chr7_3:3949629-3949648 None:intergenic 50.0%
GGCTGCAAGTATGTTCACAC+CGG + chr7_3:3949630-3949649 None:intergenic 50.0%
ATGTCTTGCCCTCATGTTGC+TGG - chr7_3:3949731-3949750 Msa1090180:CDS 50.0%
TGTCTTGCCCTCATGTTGCT+GGG - chr7_3:3949732-3949751 Msa1090180:CDS 50.0%
! TGTACTTGGTGGCCCAACAT+TGG + chr7_3:3950837-3950856 None:intergenic 50.0%
GCAACAAGTGTGACTCCAAG+GGG - chr7_3:3950962-3950981 Msa1090180:intron 50.0%
CAGCAGTCCCAGCAACATGA+GGG + chr7_3:3949742-3949761 None:intergenic 55.0%
CCTGGGTCCATTGCACTGTT+GGG + chr7_3:3950617-3950636 None:intergenic 55.0%
TCCTGGGTCCATTGCACTGT+TGG + chr7_3:3950618-3950637 None:intergenic 55.0%
CAGCAGTCCCAGCAACATGA+GGG + chr7_3:3949742-3949761 None:intergenic 55.0%
CCTGGGTCCATTGCACTGTT+GGG + chr7_3:3950617-3950636 None:intergenic 55.0%
TCCTGGGTCCATTGCACTGT+TGG + chr7_3:3950618-3950637 None:intergenic 55.0%
CCAGCAGTCCCAGCAACATG+AGG + chr7_3:3949743-3949762 None:intergenic 60.0%
CCTCATGTTGCTGGGACTGC+TGG - chr7_3:3949740-3949759 Msa1090180:CDS 60.0%
CCCAACAGTGCAATGGACCC+AGG - chr7_3:3950614-3950633 Msa1090180:intron 60.0%
CCAGCAGTCCCAGCAACATG+AGG + chr7_3:3949743-3949762 None:intergenic 60.0%
CCTCATGTTGCTGGGACTGC+TGG - chr7_3:3949740-3949759 Msa1090180:CDS 60.0%
CCCAACAGTGCAATGGACCC+AGG - chr7_3:3950614-3950633 Msa1090180:intron 60.0%
CAGCCTGATGTAACGGCGCC+CGG - chr7_3:3949608-3949627 Msa1090180:CDS 65.0%
! ACACCGGGCGCCGTTACATC+AGG + chr7_3:3949614-3949633 None:intergenic 65.0%
CAGCCTGATGTAACGGCGCC+CGG - chr7_3:3949608-3949627 Msa1090180:CDS 65.0%
! ACACCGGGCGCCGTTACATC+AGG + chr7_3:3949614-3949633 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3949386 3951063 3949386 ID=Msa1090180;Name=Msa1090180
chr7_3 mRNA 3949386 3951063 3949386 ID=Msa1090180-mRNA-1;Parent=Msa1090180;Name=Msa1090180-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0.5|0|1|1|1|3|0|285
chr7_3 exon 3950965 3951063 3950965 ID=Msa1090180-mRNA-1:exon:1506;Parent=Msa1090180-mRNA-1
chr7_3 exon 3950622 3950838 3950622 ID=Msa1090180-mRNA-1:exon:1505;Parent=Msa1090180-mRNA-1
chr7_3 exon 3949386 3949927 3949386 ID=Msa1090180-mRNA-1:exon:1504;Parent=Msa1090180-mRNA-1
chr7_3 CDS 3950965 3951063 3950965 ID=Msa1090180-mRNA-1:cds;Parent=Msa1090180-mRNA-1
chr7_3 CDS 3950622 3950838 3950622 ID=Msa1090180-mRNA-1:cds;Parent=Msa1090180-mRNA-1
chr7_3 CDS 3949386 3949927 3949386 ID=Msa1090180-mRNA-1:cds;Parent=Msa1090180-mRNA-1
Gene Sequence

>Msa1090180

ATGTCACAAGCAAAAACACTCTTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATACTCATCTAGAGGACCAAGTGAAATTCAGCCATCAATACTAAAGCCTGATGTAACGGCGCCCGGTGTGAACATACTTGCAGCCTATTCATTGTTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCGAGGTTTCCCATTCAATGTAATGCAAGGAACTTCTATGTCTTGCCCTCATGTTGCTGGGACTGCTGGATTAATCAAAACACTTCATCTGAATTGGAGTCCTGCGGCTATTAAATCAGCTATCATGACCACCGCAACCACAAGAGATAACACCAACAAGCCTATAAGTGATGCATTCGAAAACACAACTGCAAATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGACCCAGGACTTGTTTATGACCTAGGGATTAAGGATTACTTGAACTTCTTATGTGCTTCTGGATACAACCAACAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTCATAGCATAGATGACTTGAATTATCCTTCAATCACATTACCAAATATTGGTTTAAATGTTGTTAATGTCACTCGTATAGTCACCAATGTTGGGCCACCAAGTACATATTTTGCAAAAGTCCAATTGCCTGGATATAAAATTGCTGTTGTACCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGAAATTTCAAGTTATTGTGCAAGCAACAAGTGTGACTCCAAGGGGAAAATACCAATTTGGAGAACTGCAATGGACAAATGGAAAGCATATTGTAAGGAGTCCCATTACTGTTCAACGCAAATGA
Protein sequence

>Msa1090180

MSQAKTLFGRKPAPVMASYSSRGPSEIQPSILKPDVTAPGVNILAAYSLFASASNLPTDNRRGFPFNVMQGTSMSCPHVAGTAGLIKTLHLNWSPAAIKSAIMTTATTRDNTNKPISDAFENTTANPFAYGSGHIQPNSAMDPGLVYDLGIKDYLNFLCASGYNQQLISALNFNMTFTCSGTHSIDDLNYPSITLPNIGLNVVNVTRIVTNVGPPSTYFAKVQLPGYKIAVVPSSLNFKKIGEKKKFQVIVQATSVTPRGKYQFGELQWTNGKHIVRSPITVQRK*