AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163710 MtrunA17_Chr7g0261031 93.750 224 13 1 1 223 1 224 5.73e-154 426
Msa1163710 MtrunA17_Chr1g0184271 70.157 191 47 5 8 194 12 196 3.09e-91 267
Msa1163710 MtrunA17_Chr7g0260971 73.585 106 28 0 3 108 9 114 1.66e-55 176
Msa1163710 MtrunA17_Chr5g0435641 55.782 147 61 2 2 145 1 146 1.63e-52 167
Msa1163710 MtrunA17_Chr8g0351701 50.000 176 65 3 8 162 23 196 4.59e-52 168
Msa1163710 MtrunA17_Chr1g0184281 70.192 104 31 0 5 108 12 115 2.14e-49 160
Msa1163710 MtrunA17_Chr7g0245871 71.287 101 29 0 8 108 27 127 3.04e-49 161
Msa1163710 MtrunA17_Chr8g0351721 67.619 105 34 0 6 110 16 120 3.87e-49 160
Msa1163710 MtrunA17_Chr6g0460951 63.889 108 39 0 7 114 39 146 7.41e-47 154
Msa1163710 MtrunA17_Chr7g0245861 69.892 93 26 2 5 95 9 101 1.25e-40 135
Msa1163710 MtrunA17_Chr3g0114061 44.595 148 79 2 1 148 1 145 7.86e-37 126
Msa1163710 MtrunA17_Chr5g0437571 46.250 160 71 5 4 162 2 147 1.87e-36 125
Msa1163710 MtrunA17_Chr2g0311601 57.000 100 42 1 4 103 9 107 1.31e-34 120
Msa1163710 MtrunA17_Chr4g0043421 52.830 106 49 1 4 109 11 115 5.81e-34 119
Msa1163710 MtrunA17_Chr3g0106101 44.516 155 79 6 4 157 2 150 8.35e-34 119
Msa1163710 MtrunA17_Chr7g0227511 56.122 98 42 1 5 102 8 104 1.42e-33 119
Msa1163710 MtrunA17_Chr5g0437401 41.250 160 76 4 5 164 8 149 3.34e-33 117
Msa1163710 MtrunA17_Chr3g0097221 50.877 114 55 1 2 115 1 113 5.62e-33 120
Msa1163710 MtrunA17_Chr4g0058651 57.292 96 40 1 7 102 10 104 6.43e-33 117
Msa1163710 MtrunA17_Chr5g0438091 53.398 103 45 2 7 108 38 138 1.01e-32 117
Msa1163710 MtrunA17_Chr3g0117121 56.250 96 41 1 7 102 9 103 3.04e-32 115
Msa1163710 MtrunA17_Chr3g0129071 55.446 101 42 2 7 106 46 144 7.04e-32 116
Msa1163710 MtrunA17_Chr5g0402611 51.818 110 52 1 1 110 1 109 1.93e-31 117
Msa1163710 MtrunA17_Chr6g0460941 59.091 88 36 0 8 95 7 94 2.49e-31 110
Msa1163710 MtrunA17_Chr3g0113891 49.515 103 51 1 5 107 11 112 2.73e-31 113
Msa1163710 MtrunA17_Chr6g0449641 53.061 98 45 1 5 102 6 102 3.56e-31 111
Msa1163710 MtrunA17_Chr3g0115431 49.091 110 55 1 1 110 2 110 1.81e-30 112
Msa1163710 MtrunA17_Chr6g0449651 49.524 105 49 2 1 102 57 160 4.88e-29 107
Msa1163710 MtrunA17_Chr4g0030001 53.061 98 44 2 7 103 23 119 1.36e-27 103
Msa1163710 MtrunA17_Chr5g0432451 55.340 103 43 2 7 108 42 142 8.27e-27 102
Msa1163710 MtrunA17_Chr1g0200201 51.579 95 45 1 9 103 73 166 1.04e-26 102
Msa1163710 MtrunA17_Chr8g0353981 55.172 87 38 1 2 88 1 86 1.02e-25 100
Msa1163710 MtrunA17_Chr5g0444351 40.000 140 77 3 9 148 6 138 3.61e-25 96.3
Msa1163710 MtrunA17_Chr7g0225111 43.269 104 58 1 7 110 4 106 1.56e-24 93.6
Msa1163710 MtrunA17_Chr8g0374591 40.385 104 61 1 8 111 8 110 4.37e-19 80.1
Msa1163710 MtrunA17_Chr8g0374601 37.500 104 64 1 8 111 26 128 7.83e-19 82.8
Msa1163710 MtrunA17_Chr8g0342351 37.255 102 63 1 9 110 13 113 1.69e-18 81.6
Msa1163710 MtrunA17_Chr4g0059901 37.143 105 65 1 4 108 6 109 4.30e-18 80.5
Msa1163710 MtrunA17_Chr2g0330201 34.579 107 69 1 4 110 15 120 3.05e-17 78.6
Msa1163710 MtrunA17_Chr6g0452691 39.773 88 51 2 2 88 3 89 5.78e-16 73.2
Msa1163710 MtrunA17_Chr4g0040831 27.979 193 115 6 4 178 11 197 8.33e-16 73.2
Msa1163710 MtrunA17_Chr8g0374581 32.609 138 78 4 8 136 8 139 4.24e-15 71.6
Msa1163710 MtrunA17_Chr6g0452671 35.849 106 64 2 9 111 12 116 6.05e-15 70.9
Msa1163710 MtrunA17_Chr6g0452661 41.176 85 46 3 9 90 10 93 9.33e-15 71.2
Msa1163710 MtrunA17_Chr2g0326041 54.167 48 21 1 7 54 32 78 5.02e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163710 AT3G58190.1 82.203 118 19 1 8 123 11 128 4.75e-71 216
Msa1163710 AT2G42440.1 74.809 131 31 1 2 130 1 131 4.51e-69 212
Msa1163710 AT2G31310.1 61.972 142 53 1 2 143 1 141 4.06e-60 187
Msa1163710 AT2G42430.1 72.897 107 29 0 4 110 11 117 5.05e-54 174
Msa1163710 AT4G00210.1 58.333 132 54 1 3 133 6 137 1.65e-51 166
Msa1163710 AT3G03760.1 71.569 102 29 0 7 108 50 151 3.93e-50 164
Msa1163710 AT2G45420.1 74.000 100 26 0 11 110 40 139 1.48e-49 162
Msa1163710 AT5G06080.1 67.290 107 35 0 2 108 1 107 3.21e-49 159
Msa1163710 AT4G00220.1 70.000 100 30 0 11 110 20 119 1.32e-46 154
Msa1163710 AT2G45410.1 60.870 115 42 2 11 122 19 133 2.08e-42 142
Msa1163710 AT5G63090.4 41.176 187 87 6 7 193 10 173 1.19e-33 119
Msa1163710 AT5G63090.3 41.176 187 87 6 7 193 10 173 1.19e-33 119
Msa1163710 AT5G63090.2 41.176 187 87 6 7 193 10 173 1.19e-33 119
Msa1163710 AT5G63090.1 41.176 187 87 6 7 193 10 173 1.19e-33 119
Msa1163710 AT3G27650.1 54.902 102 45 1 1 102 32 132 3.58e-33 117
Msa1163710 AT2G30130.1 52.542 118 52 3 2 118 1 115 6.61e-33 118
Msa1163710 AT1G07900.1 53.608 97 44 1 7 103 32 127 5.87e-31 112
Msa1163710 AT3G11090.1 50.000 104 51 1 5 108 8 110 6.99e-31 112
Msa1163710 AT1G16530.1 49.153 118 57 3 7 122 13 129 8.04e-31 111
Msa1163710 AT1G31320.1 53.261 92 42 1 4 95 9 99 9.63e-31 111
Msa1163710 AT2G28500.1 53.608 97 44 1 7 103 54 149 4.02e-30 112
Msa1163710 AT5G66870.1 51.376 109 52 1 2 110 1 108 1.12e-29 112
Msa1163710 AT2G30340.1 51.456 103 47 2 7 108 51 151 3.72e-29 110
Msa1163710 AT2G30340.2 51.456 103 47 2 7 108 52 152 3.84e-29 110
Msa1163710 AT2G23660.2 49.020 102 51 1 7 108 4 104 5.29e-27 105
Msa1163710 AT2G23660.3 49.020 102 51 1 7 108 4 104 5.29e-27 105
Msa1163710 AT2G23660.1 49.020 102 51 1 7 108 4 104 5.29e-27 105
Msa1163710 AT3G26660.1 47.368 95 49 1 9 103 6 99 1.47e-26 99.4
Msa1163710 AT3G26620.1 47.368 95 49 1 9 103 6 99 2.94e-26 98.6
Msa1163710 AT1G65620.1 56.977 86 36 1 3 88 4 88 3.41e-26 100
Msa1163710 AT1G65620.4 56.977 86 36 1 3 88 4 88 3.41e-26 100
Msa1163710 AT1G65620.3 56.977 86 36 1 3 88 4 88 3.41e-26 100
Msa1163710 AT1G65620.5 56.977 86 36 1 3 88 4 88 3.41e-26 100
Msa1163710 AT1G65620.2 56.977 86 36 1 3 88 4 88 3.41e-26 100
Msa1163710 AT2G40470.2 54.369 103 44 2 7 108 19 119 6.65e-26 100
Msa1163710 AT2G40470.1 54.369 103 44 2 7 108 44 144 1.01e-25 100
Msa1163710 AT3G50510.1 42.478 113 64 1 2 114 6 117 3.43e-25 98.2
Msa1163710 AT3G50510.2 42.478 113 64 1 2 114 6 117 3.43e-25 98.2
Msa1163710 AT3G13850.1 38.136 118 63 3 9 118 37 152 8.70e-19 82.8
Msa1163710 AT1G72980.1 37.143 105 65 1 4 108 9 112 1.09e-16 76.3
Msa1163710 AT5G35900.1 38.235 102 62 1 9 110 6 106 4.48e-16 74.3
Msa1163710 AT3G47870.1 32.381 105 70 1 4 108 32 135 2.17e-14 71.2
Msa1163710 AT1G06280.1 38.667 75 45 1 9 83 25 98 3.02e-13 66.6

Find 50 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTCAAGATCCAATTTA+TGG 0.151814 7_4:-55049022 Msa1163710:CDS
TTTCCAAAGTTCTTCTCATT+AGG 0.257962 7_4:+55048410 None:intergenic
CCTTATGAATAGCTGCAAAA+TGG 0.260543 7_4:+55049140 None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG 0.262535 7_4:+55048310 None:intergenic
TTGAGGAGGAAATGTGTTAA+AGG 0.286061 7_4:-55049205 Msa1163710:CDS
GCAGCTATTCATAAGGTCTT+TGG 0.287235 7_4:-55049133 Msa1163710:CDS
TGGGCAACACATCCATAAAT+TGG 0.288880 7_4:+55049010 None:intergenic
ATTGGAAACTATGGAAATTC+AGG 0.295719 7_4:-55048227 Msa1163710:CDS
TCAACAACACAATATTATAA+TGG 0.305675 7_4:-55048281 Msa1163710:CDS
CTAAACCCTATTGGAAACTA+TGG 0.305911 7_4:-55048236 Msa1163710:CDS
TTCCAAAGTTCTTCTCATTA+GGG 0.315481 7_4:+55048411 None:intergenic
CTCATGGATCTAAACCCTAT+TGG 0.344271 7_4:-55048245 Msa1163710:CDS
TTTCCTCCTCAAGAATTTGC+AGG 0.357584 7_4:+55049216 None:intergenic
GAATTTCCATAGTTTCCAAT+AGG 0.367324 7_4:+55048230 None:intergenic
TGGAAATTCAGGAACCCTAT+TGG 0.383717 7_4:-55048216 Msa1163710:CDS
ATGAGATGCTTTCTTCCAAT+AGG 0.385876 7_4:+55048201 None:intergenic
ACGGCCATGATGACTGGTTC+TGG 0.395558 7_4:-55049253 None:intergenic
CAACAACACAATATTATAAT+GGG 0.395664 7_4:-55048280 Msa1163710:CDS
AATTTCCATAGTTTCCAATA+GGG 0.422009 7_4:+55048231 None:intergenic
TCTTGAGGGAGAATATTAGT+AGG 0.429657 7_4:+55048386 None:intergenic
GAGATGAACAAACCTGTTGC+TGG 0.430997 7_4:+55048975 None:intergenic
CTTATGAATAGCTGCAAAAT+GGG 0.434815 7_4:+55049141 None:intergenic
AACCCTAATGAGAAGAACTT+TGG 0.435631 7_4:-55048413 Msa1163710:CDS
ATTCTTACGGCCATGATGAC+TGG 0.446907 7_4:-55049259 None:intergenic
AATGGGTAGCACCTTGTTCA+TGG 0.448967 7_4:+55049158 None:intergenic
TGTTGTTGATGAGAGATTAG+TGG 0.463491 7_4:+55048295 None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG 0.463884 7_4:-55048373 Msa1163710:CDS
TGAGATGCTTTCTTCCAATA+GGG 0.477061 7_4:+55048202 None:intergenic
CAAATTAGCCACTTACTGAT+AGG 0.482945 7_4:+55048112 None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG 0.494488 7_4:-55049241 Msa1163710:CDS
TGGGACTACCACTACTCTCA+TGG 0.512301 7_4:-55048261 Msa1163710:CDS
TCTTCAAAGTTGGTTCCAGA+TGG 0.523638 7_4:-55048363 Msa1163710:CDS
CTGTCTTTGCATGTTGTCAA+AGG 0.524030 7_4:+55048139 None:intergenic
CCTTGTTCATGGCAAAAGTA+AGG 0.524451 7_4:+55049169 None:intergenic
AACCAACTTTGAAGATCTTG+AGG 0.528680 7_4:+55048371 None:intergenic
GCTTCACAACGATCAGTCAC+AGG 0.531664 7_4:+55049076 None:intergenic
TTAGTGGAAGAAGAGAAATC+GGG 0.531706 7_4:+55048311 None:intergenic
ACCAACTTTGAAGATCTTGA+GGG 0.534056 7_4:+55048372 None:intergenic
GTGGAGCCTGCAAATTCTTG+AGG 0.534107 7_4:-55049222 Msa1163710:CDS
AAGAAATTGAGAACACATGT+TGG 0.541417 7_4:+55048334 None:intergenic
ATTATTACATCGCTCATCAA+AGG 0.565424 7_4:+55048169 None:intergenic
AGAACCAGAACCAGTCATCA+TGG 0.567393 7_4:+55049249 None:intergenic
TGAGAGAACAAGCAGCTCAA+AGG 0.584503 7_4:-55048460 Msa1163710:CDS
AAGAATTTGCAGGCTCCACA+AGG 0.586151 7_4:+55049226 None:intergenic
CAGTCACAGGGAGGTGTGCG+AGG 0.596818 7_4:+55049089 None:intergenic
GTTTAGATCCATGAGAGTAG+TGG 0.619212 7_4:+55048253 None:intergenic
GAGCCTGCAAATTCTTGAGG+AGG 0.637179 7_4:-55049219 Msa1163710:CDS
CTTCACAACGATCAGTCACA+GGG 0.652040 7_4:+55049077 None:intergenic
TTGACAACATGCAAAGACAG+TGG 0.686531 7_4:-55048136 Msa1163710:CDS
CACAACGATCAGTCACAGGG+AGG 0.754403 7_4:+55049080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTCTTTTTTATATATAAAC+TGG + chr7_4:55048538-55048557 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG - chr7_4:55048766-55048785 Msa1163710:intron 15.0%
!!! ACTCTTTTTTATATATAAAC+TGG + chr7_4:55048538-55048557 None:intergenic 15.0%
!!! TTGAGTTTGTAATAAAATTT+TGG - chr7_4:55048766-55048785 Msa1163710:intron 15.0%
!!! ATTAATTAACAAGAGTATCA+AGG - chr7_4:55048507-55048526 Msa1163710:intron 20.0%
!!! TTAATTAACAAGAGTATCAA+GGG - chr7_4:55048508-55048527 Msa1163710:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG + chr7_4:55048570-55048589 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG - chr7_4:55048658-55048677 Msa1163710:intron 20.0%
!! TCAACAACACAATATTATAA+TGG - chr7_4:55049090-55049109 Msa1163710:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG - chr7_4:55049091-55049110 Msa1163710:CDS 20.0%
!!! ATTAATTAACAAGAGTATCA+AGG - chr7_4:55048507-55048526 Msa1163710:intron 20.0%
!!! TTAATTAACAAGAGTATCAA+GGG - chr7_4:55048508-55048527 Msa1163710:intron 20.0%
!!! AGGTCTTAATATTGATTTTT+TGG + chr7_4:55048570-55048589 None:intergenic 20.0%
!! TATATTTGATAAAATCACGA+TGG - chr7_4:55048658-55048677 Msa1163710:intron 20.0%
!! TCAACAACACAATATTATAA+TGG - chr7_4:55049090-55049109 Msa1163710:CDS 20.0%
!! CAACAACACAATATTATAAT+GGG - chr7_4:55049091-55049110 Msa1163710:CDS 20.0%
!! TATGTCATGTTGATTGTATT+AGG + chr7_4:55048590-55048609 None:intergenic 25.0%
! AATTTCCATAGTTTCCAATA+GGG + chr7_4:55049143-55049162 None:intergenic 25.0%
!! TATGTCATGTTGATTGTATT+AGG + chr7_4:55048590-55048609 None:intergenic 25.0%
! AATTTCCATAGTTTCCAATA+GGG + chr7_4:55049143-55049162 None:intergenic 25.0%
CTTATGAATAGCTGCAAAAT+GGG + chr7_4:55048233-55048252 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG - chr7_4:55048349-55048368 Msa1163710:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG + chr7_4:55048947-55048966 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG + chr7_4:55048948-55048967 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG + chr7_4:55048949-55048968 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG + chr7_4:55048963-55048982 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG + chr7_4:55048964-55048983 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG + chr7_4:55049040-55049059 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG + chr7_4:55049064-55049083 None:intergenic 30.0%
GAATTTCCATAGTTTCCAAT+AGG + chr7_4:55049144-55049163 None:intergenic 30.0%
ATTGGAAACTATGGAAATTC+AGG - chr7_4:55049144-55049163 Msa1163710:CDS 30.0%
ATTATTACATCGCTCATCAA+AGG + chr7_4:55049205-55049224 None:intergenic 30.0%
CTTATGAATAGCTGCAAAAT+GGG + chr7_4:55048233-55048252 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG - chr7_4:55048349-55048368 Msa1163710:CDS 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG + chr7_4:55048947-55048966 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG + chr7_4:55048948-55048967 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG + chr7_4:55048949-55048968 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG + chr7_4:55048963-55048982 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG + chr7_4:55048964-55048983 None:intergenic 30.0%
AAGAAATTGAGAACACATGT+TGG + chr7_4:55049040-55049059 None:intergenic 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG + chr7_4:55049064-55049083 None:intergenic 30.0%
GAATTTCCATAGTTTCCAAT+AGG + chr7_4:55049144-55049163 None:intergenic 30.0%
ATTGGAAACTATGGAAATTC+AGG - chr7_4:55049144-55049163 Msa1163710:CDS 30.0%
ATTATTACATCGCTCATCAA+AGG + chr7_4:55049205-55049224 None:intergenic 30.0%
TTGAGGAGGAAATGTGTTAA+AGG - chr7_4:55048166-55048185 Msa1163710:CDS 35.0%
CCTTATGAATAGCTGCAAAA+TGG + chr7_4:55048234-55048253 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG - chr7_4:55048231-55048250 Msa1163710:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG + chr7_4:55048383-55048402 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG - chr7_4:55048426-55048445 Msa1163710:CDS 35.0%
ATGTAAGCGTATACCATCTA+GGG + chr7_4:55048442-55048461 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG + chr7_4:55048443-55048462 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG - chr7_4:55048625-55048644 Msa1163710:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG + chr7_4:55048722-55048741 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG - chr7_4:55048723-55048742 Msa1163710:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG - chr7_4:55048742-55048761 Msa1163710:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG - chr7_4:55048858-55048877 Msa1163710:intron 35.0%
ATTGACTACCTACAAAGATC+AGG + chr7_4:55048869-55048888 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG - chr7_4:55048958-55048977 Msa1163710:intron 35.0%
TCTTGAGGGAGAATATTAGT+AGG + chr7_4:55048988-55049007 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG + chr7_4:55049002-55049021 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG + chr7_4:55049003-55049022 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG + chr7_4:55049026-55049045 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG + chr7_4:55049063-55049082 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG + chr7_4:55049079-55049098 None:intergenic 35.0%
CTAAACCCTATTGGAAACTA+TGG - chr7_4:55049135-55049154 Msa1163710:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG + chr7_4:55049172-55049191 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG + chr7_4:55049173-55049192 None:intergenic 35.0%
TTGAGGAGGAAATGTGTTAA+AGG - chr7_4:55048166-55048185 Msa1163710:CDS 35.0%
CCTTATGAATAGCTGCAAAA+TGG + chr7_4:55048234-55048253 None:intergenic 35.0%
! CCATTTTGCAGCTATTCATA+AGG - chr7_4:55048231-55048250 Msa1163710:CDS 35.0%
TTGCTGGAGTGCAAAAATAT+GGG + chr7_4:55048383-55048402 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG - chr7_4:55048426-55048445 Msa1163710:CDS 35.0%
ATGTAAGCGTATACCATCTA+GGG + chr7_4:55048442-55048461 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG + chr7_4:55048443-55048462 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG - chr7_4:55048625-55048644 Msa1163710:intron 35.0%
TTGTATTAACTGCGCGAATT+TGG + chr7_4:55048722-55048741 None:intergenic 35.0%
ATTCGCGCAGTTAATACAAT+TGG - chr7_4:55048723-55048742 Msa1163710:intron 35.0%
TTGGTGTATTATTGATGCAC+TGG - chr7_4:55048742-55048761 Msa1163710:intron 35.0%
TTCTTCTTCCTGATCTTTGT+AGG - chr7_4:55048858-55048877 Msa1163710:intron 35.0%
ATTGACTACCTACAAAGATC+AGG + chr7_4:55048869-55048888 None:intergenic 35.0%
AACCCTAATGAGAAGAACTT+TGG - chr7_4:55048958-55048977 Msa1163710:intron 35.0%
TCTTGAGGGAGAATATTAGT+AGG + chr7_4:55048988-55049007 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG + chr7_4:55049002-55049021 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG + chr7_4:55049003-55049022 None:intergenic 35.0%
! ACATGTTGGAATTTTCCATC+TGG + chr7_4:55049026-55049045 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG + chr7_4:55049063-55049082 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG + chr7_4:55049079-55049098 None:intergenic 35.0%
CTAAACCCTATTGGAAACTA+TGG - chr7_4:55049135-55049154 Msa1163710:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG + chr7_4:55049172-55049191 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG + chr7_4:55049173-55049192 None:intergenic 35.0%
TTTCCTCCTCAAGAATTTGC+AGG + chr7_4:55048158-55048177 None:intergenic 40.0%
CCTTGTTCATGGCAAAAGTA+AGG + chr7_4:55048205-55048224 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG - chr7_4:55048202-55048221 Msa1163710:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG - chr7_4:55048238-55048257 Msa1163710:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG + chr7_4:55048364-55048383 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG + chr7_4:55048384-55048403 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG - chr7_4:55048384-55048403 Msa1163710:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG - chr7_4:55048666-55048685 Msa1163710:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG - chr7_4:55048998-55049017 Msa1163710:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG - chr7_4:55049008-55049027 Msa1163710:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG + chr7_4:55049121-55049140 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG - chr7_4:55049126-55049145 Msa1163710:CDS 40.0%
TGGAAATTCAGGAACCCTAT+TGG - chr7_4:55049155-55049174 Msa1163710:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG + chr7_4:55049235-55049254 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG - chr7_4:55049235-55049254 Msa1163710:CDS 40.0%
TTTCCTCCTCAAGAATTTGC+AGG + chr7_4:55048158-55048177 None:intergenic 40.0%
CCTTGTTCATGGCAAAAGTA+AGG + chr7_4:55048205-55048224 None:intergenic 40.0%
!! CCTTACTTTTGCCATGAACA+AGG - chr7_4:55048202-55048221 Msa1163710:CDS 40.0%
GCAGCTATTCATAAGGTCTT+TGG - chr7_4:55048238-55048257 Msa1163710:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG + chr7_4:55048364-55048383 None:intergenic 40.0%
GTTGCTGGAGTGCAAAAATA+TGG + chr7_4:55048384-55048403 None:intergenic 40.0%
!! TATTTTTGCACTCCAGCAAC+AGG - chr7_4:55048384-55048403 Msa1163710:CDS 40.0%
ATAAAATCACGATGGCATCG+AGG - chr7_4:55048666-55048685 Msa1163710:intron 40.0%
TCCCTCAAGATCTTCAAAGT+TGG - chr7_4:55048998-55049017 Msa1163710:CDS 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG - chr7_4:55049008-55049027 Msa1163710:CDS 40.0%
GTTTAGATCCATGAGAGTAG+TGG + chr7_4:55049121-55049140 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG - chr7_4:55049126-55049145 Msa1163710:CDS 40.0%
TGGAAATTCAGGAACCCTAT+TGG - chr7_4:55049155-55049174 Msa1163710:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG + chr7_4:55049235-55049254 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG - chr7_4:55049235-55049254 Msa1163710:CDS 40.0%
AAGAATTTGCAGGCTCCACA+AGG + chr7_4:55048148-55048167 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG + chr7_4:55048216-55048235 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG + chr7_4:55048297-55048316 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG + chr7_4:55048399-55048418 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG + chr7_4:55048617-55048636 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG - chr7_4:55048614-55048633 Msa1163710:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG - chr7_4:55048813-55048832 Msa1163710:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG - chr7_4:55048911-55048930 Msa1163710:intron 45.0%
AAGAATTTGCAGGCTCCACA+AGG + chr7_4:55048148-55048167 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG + chr7_4:55048216-55048235 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG + chr7_4:55048297-55048316 None:intergenic 45.0%
GAGATGAACAAACCTGTTGC+TGG + chr7_4:55048399-55048418 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG + chr7_4:55048617-55048636 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG - chr7_4:55048614-55048633 Msa1163710:intron 45.0%
! CACTGTGTTGATCTATGCAG+TGG - chr7_4:55048813-55048832 Msa1163710:intron 45.0%
TGAGAGAACAAGCAGCTCAA+AGG - chr7_4:55048911-55048930 Msa1163710:intron 45.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG - chr7_4:55048130-55048149 Msa1163710:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG - chr7_4:55048149-55048168 Msa1163710:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG - chr7_4:55048152-55048171 Msa1163710:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG + chr7_4:55048298-55048317 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG - chr7_4:55049110-55049129 Msa1163710:CDS 50.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG - chr7_4:55048130-55048149 Msa1163710:CDS 50.0%
GTGGAGCCTGCAAATTCTTG+AGG - chr7_4:55048149-55048168 Msa1163710:CDS 50.0%
GAGCCTGCAAATTCTTGAGG+AGG - chr7_4:55048152-55048171 Msa1163710:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG + chr7_4:55048298-55048317 None:intergenic 50.0%
TGGGACTACCACTACTCTCA+TGG - chr7_4:55049110-55049129 Msa1163710:CDS 50.0%
CACAACGATCAGTCACAGGG+AGG + chr7_4:55048294-55048313 None:intergenic 55.0%
CACAACGATCAGTCACAGGG+AGG + chr7_4:55048294-55048313 None:intergenic 55.0%
! CAGTCACAGGGAGGTGTGCG+AGG + chr7_4:55048285-55048304 None:intergenic 65.0%
! CAGTCACAGGGAGGTGTGCG+AGG + chr7_4:55048285-55048304 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55048124 55049269 55048124 ID=Msa1163710;Name=Msa1163710
chr7_4 mRNA 55048124 55049269 55048124 ID=Msa1163710-mRNA-1;Parent=Msa1163710;Name=Msa1163710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|223
chr7_4 exon 55048988 55049269 55048988 ID=Msa1163710-mRNA-1:exon:16085;Parent=Msa1163710-mRNA-1
chr7_4 exon 55048124 55048513 55048124 ID=Msa1163710-mRNA-1:exon:16084;Parent=Msa1163710-mRNA-1
chr7_4 CDS 55048988 55049269 55048988 ID=Msa1163710-mRNA-1:cds;Parent=Msa1163710-mRNA-1
chr7_4 CDS 55048124 55048513 55048124 ID=Msa1163710-mRNA-1:cds;Parent=Msa1163710-mRNA-1
Gene Sequence

>Msa1163710

ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTTAAAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAGCTCCTCGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCCCATATTTTTGCACTCCAGCAACAGGTAGTCAATTTACAAGCACAGCTAGCTTTTCTGAGAGAACAAGCAGCTCAAAGGTGTCTCAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAACTTTGGAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAACATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTATAATGGGACTACCACTACTCTCATGGATCTAAACCCTATTGGAAACTATGGAAATTCAGGAACCCTATTGGAAGAAAGCATCTCATCACTTTCTACCTTTGATGAGCGATGTAATAATTCAATGTCCTTTGACAACATGCAAAGACAGTGGACCTATCAGTAA

Protein sequence

>Msa1163710

MMTGSGSPCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAFLREQAAQRCLNAPNSENPNEKNFGKPTNILPQDLQSWFQMENSNMCSQFLPDFSSSTNLSSTTQYYNGTTTTLMDLNPIGNYGNSGTLLEESISSLSTFDERCNNSMSFDNMQRQWTYQ*