AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052550 MtrunA17_Chr1g0152171 93.939 264 9 3 1 258 1 263 1.24e-175 484
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052550 AT1G44920.1 59.459 259 92 6 7 258 6 258 2.00e-97 286

Find 59 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCATTTCTTCTTTCTA+TGG 0.204630 1_2:-6846938 None:intergenic
GTGCTTCTGGTGTTGAATTT+AGG 0.280781 1_2:-6847206 None:intergenic
AGAGATTGAAGTGATGAATT+TGG 0.292633 1_2:-6847156 None:intergenic
AGCCATATCCAATCTCCTTT+TGG 0.303381 1_2:+6847010 Msa0052550:CDS
TCAGGCCATTTGCCTAACTA+TGG 0.307108 1_2:+6849649 Msa0052550:CDS
GGCAGATAGGAATTGCAATA+AGG 0.319499 1_2:+6849617 Msa0052550:intron
GGGTCTAATGAAGGTGCTTC+TGG 0.321486 1_2:-6847219 None:intergenic
CCAAACATACCAGCTATAAA+AGG 0.329020 1_2:-6847665 None:intergenic
GTCTCTGTTTCCTTCAGCTT+TGG 0.332190 1_2:-6847258 None:intergenic
TGCAGTAGCAATGACGCCTT+TGG 0.338369 1_2:-6848206 None:intergenic
GAATTTAGGTGGTTGATTAA+TGG 0.352205 1_2:-6847192 None:intergenic
AGGCGTGTAGCTCTGTTTGC+TGG 0.388205 1_2:+6847548 Msa0052550:intron
CTCCAAAAGGAGATTGGATA+TGG 0.397818 1_2:-6847012 None:intergenic
CTCTTCTTACTATTGTCAAC+TGG 0.401605 1_2:-6849745 None:intergenic
GATTTAAATCATTTGTATCA+TGG 0.406563 1_2:+6850143 Msa0052550:three_prime_UTR
GCAATAAGGGCAGCAAAATC+AGG 0.408856 1_2:+6849631 Msa0052550:CDS
TGACAAGGATGTTCCATTAG+AGG 0.413397 1_2:+6847340 Msa0052550:CDS
CTAGCAGATCATAGTGCAAA+TGG 0.415936 1_2:-6850172 None:intergenic
ATACGAGATGAAGAGTTGTT+TGG 0.425511 1_2:-6847383 None:intergenic
TGAAATGTGACGATATTAGA+AGG 0.428150 1_2:+6850306 Msa0052550:three_prime_UTR
TCGTAAAGATAAACGTTAAG+TGG 0.434939 1_2:-6850274 None:intergenic
TTAGGTGCTTACTTCCTTGG+AGG 0.440953 1_2:+6848148 Msa0052550:CDS
AACTGAATAACACCCTCTAA+TGG 0.444731 1_2:-6847353 None:intergenic
GTTTGCTGGTGGTGATGTGT+TGG 0.448054 1_2:+6847562 Msa0052550:CDS
AACGATCGATTAAATGTTCA+AGG 0.454298 1_2:+6849961 Msa0052550:exon
AACTGTAATGTATATGCATC+AGG 0.461805 1_2:+6849984 Msa0052550:three_prime_UTR
GCAGATAGGAATTGCAATAA+GGG 0.466853 1_2:+6849618 Msa0052550:intron
TCATTGCTACTGCAAAATCA+TGG 0.467859 1_2:+6848215 Msa0052550:CDS
CAAAACCATAGTTAGGCAAA+TGG 0.490644 1_2:-6849654 None:intergenic
CTGCAAAATCATGGGCTGTA+GGG 0.498651 1_2:+6848224 Msa0052550:CDS
ACTGCAAAATCATGGGCTGT+AGG 0.508711 1_2:+6848223 Msa0052550:CDS
CATTTGCACTATGATCTGCT+AGG 0.510585 1_2:+6850173 Msa0052550:three_prime_UTR
ACTAATACAAAACCATAGTT+AGG 0.511253 1_2:-6849661 None:intergenic
GCAGTAGCAATGACGCCTTT+GGG 0.531373 1_2:-6848205 None:intergenic
TTGATCATTGGCAAAAGAAG+AGG 0.542935 1_2:-6847303 None:intergenic
AGCTTCTCACATCATTAGTA+CGG 0.543490 1_2:+6849931 Msa0052550:intron
CTTCTGGTGTTGAATTTAGG+TGG 0.547043 1_2:-6847203 None:intergenic
TAGCAGATCATAGTGCAAAT+GGG 0.555937 1_2:-6850171 None:intergenic
GAAGATGGGCGTGGAATGAA+TGG 0.558299 1_2:+6848178 Msa0052550:CDS
TGATCATTGGCAAAAGAAGA+GGG 0.564070 1_2:-6847302 None:intergenic
TGATTAATGGAGAATTGTTG+TGG 0.564881 1_2:-6847179 None:intergenic
TTGGCTAGTGTAAGATGCAA+GGG 0.569643 1_2:-6847239 None:intergenic
CATTGCTACTGCAAAATCAT+GGG 0.569767 1_2:+6848216 Msa0052550:CDS
ACTATTGTCAACTGGAAGAA+CGG 0.577024 1_2:-6849737 None:intergenic
TTTGGCTAGTGTAAGATGCA+AGG 0.583472 1_2:-6847240 None:intergenic
TCAGATCACATGATGATGAA+AGG 0.584062 1_2:+6850217 Msa0052550:three_prime_UTR
GACAAGGATGTTCCATTAGA+GGG 0.603592 1_2:+6847341 Msa0052550:CDS
AAGATGCAAGGGTCTAATGA+AGG 0.606568 1_2:-6847228 None:intergenic
GATACAAAGAGATTTAGCTA+TGG 0.610588 1_2:-6850017 None:intergenic
TCACATCATTAGTACGGCGG+TGG 0.611971 1_2:+6849937 Msa0052550:CDS
CTTACACTAGCCAAAGCTGA+AGG 0.620752 1_2:+6847248 Msa0052550:CDS
CATCTTCACTAAAACCTCCA+AGG 0.627812 1_2:-6848162 None:intergenic
ACAATTGGAAGATATAGTCA+TGG 0.628651 1_2:+6847602 Msa0052550:CDS
CGTGTAGCTCTGTTTGCTGG+TGG 0.629973 1_2:+6847551 Msa0052550:CDS
GGAATGAATGGTCTACCCAA+AGG 0.648080 1_2:+6848190 Msa0052550:CDS
TTCTCACATCATTAGTACGG+CGG 0.687718 1_2:+6849934 Msa0052550:CDS
GATCACATGATGATGAAAGG+AGG 0.689143 1_2:+6850220 Msa0052550:three_prime_UTR
AAAGTTCAAAGGGACTTCCG+CGG 0.704061 1_2:-6849780 None:intergenic
AAGAGTGATGTCTATCGCCG+CGG 0.738642 1_2:+6849763 Msa0052550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTTTTATGTAAAAA+TGG + chr1_2:6847453-6847472 Msa0052550:intron 10.0%
!!! AACATTTTTGTTTTTATTTT+GGG + chr1_2:6848065-6848084 Msa0052550:intron 10.0%
!! AAAATATAAAGTTTCATTTA+TGG - chr1_2:6849337-6849356 None:intergenic 10.0%
!! AAAAAAATGATCATAATATG+TGG + chr1_2:6846908-6846927 Msa0052550:five_prime_UTR 15.0%
!!! GAACATTTTTGTTTTTATTT+TGG + chr1_2:6848064-6848083 Msa0052550:intron 15.0%
!!! ACATTTTTGTTTTTATTTTG+GGG + chr1_2:6848066-6848085 Msa0052550:intron 15.0%
!! TGAAAATTTAAAAAAGAATG+AGG + chr1_2:6848979-6848998 Msa0052550:intron 15.0%
!! GAAAATTTAAAAAAGAATGA+GGG + chr1_2:6848980-6848999 Msa0052550:intron 15.0%
!! AAAATTTAAAAAAGAATGAG+GGG + chr1_2:6848981-6849000 Msa0052550:intron 15.0%
!!! TTTAATCTTTTTTAACTTCT+TGG + chr1_2:6849596-6849615 Msa0052550:intron 15.0%
!!! ACTTTATGTGAATTTTTATC+TGG + chr1_2:6847478-6847497 Msa0052550:intron 20.0%
!!! CTTTATGTGAATTTTTATCT+GGG + chr1_2:6847479-6847498 Msa0052550:intron 20.0%
!!! ATGATAGATTTGAAATTTGT+TGG + chr1_2:6848096-6848115 Msa0052550:intron 20.0%
!!! ATGTCTTTTGTTAGTAAATT+TGG + chr1_2:6848462-6848481 Msa0052550:intron 20.0%
!! TACAACTTCTGTTAATAATT+TGG + chr1_2:6848529-6848548 Msa0052550:intron 20.0%
!! AAAAATGCAGTAATTCTTTA+GGG + chr1_2:6849092-6849111 Msa0052550:intron 20.0%
!! GATTTAAATCATTTGTATCA+TGG + chr1_2:6850143-6850162 Msa0052550:three_prime_UTR 20.0%
! TTGTTCATTTCTTCTTTCTA+TGG - chr1_2:6846941-6846960 None:intergenic 25.0%
! AACAAAAACAGTTTGATCAT+TGG - chr1_2:6847318-6847337 None:intergenic 25.0%
!!! AATGATCAAACTGTTTTTGT+TGG + chr1_2:6847317-6847336 Msa0052550:CDS 25.0%
! TTCATCTCGTATTGAAAAAT+GGG + chr1_2:6847394-6847413 Msa0052550:CDS 25.0%
!!! GTTTTTGTTGTTATTGTTTG+TGG + chr1_2:6847501-6847520 Msa0052550:intron 25.0%
!!! TTGCTTTTGTTTTCAACAAT+TGG + chr1_2:6847587-6847606 Msa0052550:CDS 25.0%
!! ATGCATTCAATTTGAAGTAT+CGG - chr1_2:6847810-6847829 None:intergenic 25.0%
! AACAAACCTTCAATATGAAA+TGG - chr1_2:6847924-6847943 None:intergenic 25.0%
! TTCATTGATCAAACTTACAT+TGG + chr1_2:6847967-6847986 Msa0052550:intron 25.0%
! TTATTGCATTACTTGGAAAT+TGG + chr1_2:6848281-6848300 Msa0052550:intron 25.0%
!!! TTCTAGTTCTTAAATATGTG+TGG + chr1_2:6848416-6848435 Msa0052550:intron 25.0%
! TTGTTAGTAAATTTGGTTGT+CGG + chr1_2:6848469-6848488 Msa0052550:intron 25.0%
!! ATGTCTTTTGTTAGTTAGTT+TGG + chr1_2:6848498-6848517 Msa0052550:intron 25.0%
!! TTTATCCTAAAAGAGCTTTT+AGG - chr1_2:6848802-6848821 None:intergenic 25.0%
! TCATATAAATGCTCATGTAT+TGG + chr1_2:6848843-6848862 Msa0052550:intron 25.0%
!! TAGCATAATTTAGAGCTAAT+TGG - chr1_2:6848946-6848965 None:intergenic 25.0%
! GAAAAATGCAGTAATTCTTT+AGG + chr1_2:6849091-6849110 Msa0052550:intron 25.0%
! TCCATAATTTCGATACATTT+AGG + chr1_2:6849182-6849201 Msa0052550:intron 25.0%
! CCATAATTTCGATACATTTA+GGG + chr1_2:6849183-6849202 Msa0052550:intron 25.0%
!!! TTTTGGTTCATAAATATGTG+AGG - chr1_2:6849218-6849237 None:intergenic 25.0%
! AAAAAAATTGCCCTTAGTAA+GGG + chr1_2:6849514-6849533 Msa0052550:intron 25.0%
! ACTAATACAAAACCATAGTT+AGG - chr1_2:6849664-6849683 None:intergenic 25.0%
AGAGATTGAAGTGATGAATT+TGG - chr1_2:6847159-6847178 None:intergenic 30.0%
TGATTAATGGAGAATTGTTG+TGG - chr1_2:6847182-6847201 None:intergenic 30.0%
GAATTTAGGTGGTTGATTAA+TGG - chr1_2:6847195-6847214 None:intergenic 30.0%
CTTCATCTCGTATTGAAAAA+TGG + chr1_2:6847393-6847412 Msa0052550:CDS 30.0%
TCATCTCGTATTGAAAAATG+GGG + chr1_2:6847395-6847414 Msa0052550:CDS 30.0%
TGTTATTGTTTGTGGTTATG+AGG + chr1_2:6847509-6847528 Msa0052550:intron 30.0%
GTTATTGTTTGTGGTTATGA+GGG + chr1_2:6847510-6847529 Msa0052550:intron 30.0%
ACAATTGGAAGATATAGTCA+TGG + chr1_2:6847602-6847621 Msa0052550:CDS 30.0%
! ACCGACATTTTACAGTTAAA+TGG + chr1_2:6847870-6847889 Msa0052550:intron 30.0%
CCCATTTAACTGTAAAATGT+CGG - chr1_2:6847874-6847893 None:intergenic 30.0%
! CCGACATTTTACAGTTAAAT+GGG + chr1_2:6847871-6847890 Msa0052550:intron 30.0%
AAACCTTCAATATGAAATGG+TGG - chr1_2:6847921-6847940 None:intergenic 30.0%
! GATCAAACTTACATTGGTTA+CGG + chr1_2:6847973-6847992 Msa0052550:intron 30.0%
! ATTTGTTGGATGTGTTTCAA+TGG + chr1_2:6848110-6848129 Msa0052550:intron 30.0%
TTTGTTGGATGTGTTTCAAT+GGG + chr1_2:6848111-6848130 Msa0052550:intron 30.0%
GGAAAAAATTTGTGGAAAGA+TGG - chr1_2:6848313-6848332 None:intergenic 30.0%
AATGCTAGGGAAAAAATTTG+TGG - chr1_2:6848321-6848340 None:intergenic 30.0%
CTCTGAATGTATCGAAATTA+TGG - chr1_2:6848556-6848575 None:intergenic 30.0%
CATAATTTCGATACATTCAG+AGG + chr1_2:6848554-6848573 Msa0052550:intron 30.0%
CAATGCCTCACAAAATAATT+TGG + chr1_2:6848585-6848604 Msa0052550:intron 30.0%
!! ATGGACCAAATTATTTTGTG+AGG - chr1_2:6848593-6848612 None:intergenic 30.0%
! GAAAAACTGCATCGATATTA+TGG - chr1_2:6848612-6848631 None:intergenic 30.0%
GAACACTTGAATCAATAGTT+AGG + chr1_2:6848632-6848651 Msa0052550:intron 30.0%
TAAACATAACCTGACAAAGT+TGG + chr1_2:6848662-6848681 Msa0052550:intron 30.0%
TATCATCAAAGAAGCTTTCA+AGG - chr1_2:6849051-6849070 None:intergenic 30.0%
! TTGAAAGCTTCTTTGATGAT+AGG + chr1_2:6849050-6849069 Msa0052550:intron 30.0%
! TGAAAGCTTCTTTGATGATA+GGG + chr1_2:6849051-6849070 Msa0052550:intron 30.0%
AACTAACAAAAGACACGTTT+AGG - chr1_2:6849123-6849142 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG + chr1_2:6849127-6849146 Msa0052550:intron 30.0%
CCCTAAATGTATCGAAATTA+TGG - chr1_2:6849186-6849205 None:intergenic 30.0%
! AAACGAGTAAACAGTCATTT+TGG - chr1_2:6849235-6849254 None:intergenic 30.0%
TCTAAGCTGTAATTAGCAAA+TGG - chr1_2:6849414-6849433 None:intergenic 30.0%
ACAGCTGCATTTAATTCATA+GGG + chr1_2:6849433-6849452 Msa0052550:intron 30.0%
!! TTTTTCAACTCAACCAAAAG+TGG - chr1_2:6849499-6849518 None:intergenic 30.0%
GAAAAAAATTGCCCTTAGTA+AGG + chr1_2:6849513-6849532 Msa0052550:intron 30.0%
!!! TTTTTAACTTCTTGGCAGAT+AGG + chr1_2:6849604-6849623 Msa0052550:intron 30.0%
TGTACCTCAAAAAGTTCAAA+GGG - chr1_2:6849793-6849812 None:intergenic 30.0%
ATGTACCTCAAAAAGTTCAA+AGG - chr1_2:6849794-6849813 None:intergenic 30.0%
AACGATCGATTAAATGTTCA+AGG + chr1_2:6849961-6849980 Msa0052550:exon 30.0%
AACTGTAATGTATATGCATC+AGG + chr1_2:6849984-6850003 Msa0052550:three_prime_UTR 30.0%
GATACAAAGAGATTTAGCTA+TGG - chr1_2:6850020-6850039 None:intergenic 30.0%
TCGTAAAGATAAACGTTAAG+TGG - chr1_2:6850277-6850296 None:intergenic 30.0%
TGAAATGTGACGATATTAGA+AGG + chr1_2:6850306-6850325 Msa0052550:three_prime_UTR 30.0%
TGATCATTGGCAAAAGAAGA+GGG - chr1_2:6847305-6847324 None:intergenic 35.0%
TTGATCATTGGCAAAAGAAG+AGG - chr1_2:6847306-6847325 None:intergenic 35.0%
!!! AACTGTTTTTGTTGGTGACA+AGG + chr1_2:6847325-6847344 Msa0052550:CDS 35.0%
AACTGAATAACACCCTCTAA+TGG - chr1_2:6847356-6847375 None:intergenic 35.0%
ATACGAGATGAAGAGTTGTT+TGG - chr1_2:6847386-6847405 None:intergenic 35.0%
CATCTCGTATTGAAAAATGG+GGG + chr1_2:6847396-6847415 Msa0052550:CDS 35.0%
CCAAACATACCAGCTATAAA+AGG - chr1_2:6847668-6847687 None:intergenic 35.0%
! CCTTTTATAGCTGGTATGTT+TGG + chr1_2:6847665-6847684 Msa0052550:intron 35.0%
GTGAAGAGTTGCAATCAAAT+AGG + chr1_2:6847760-6847779 Msa0052550:intron 35.0%
TGTCGGATATTGATATGTGT+CGG - chr1_2:6847851-6847870 None:intergenic 35.0%
TAACTGTAAAATGTCGGTGT+CGG - chr1_2:6847868-6847887 None:intergenic 35.0%
!!! GACCTGTTTTTAAAACCTTG+TGG + chr1_2:6848038-6848057 Msa0052550:intron 35.0%
!!! AGCCACAAGGTTTTAAAAAC+AGG - chr1_2:6848043-6848062 None:intergenic 35.0%
ACAAAAATGTTCAAGCCACA+AGG - chr1_2:6848056-6848075 None:intergenic 35.0%
!!! TTTTTAGGTGCTTACTTCCT+TGG + chr1_2:6848145-6848164 Msa0052550:CDS 35.0%
!! TTGGAGGTTTTAGTGAAGAT+GGG + chr1_2:6848164-6848183 Msa0052550:CDS 35.0%
TCATTGCTACTGCAAAATCA+TGG + chr1_2:6848215-6848234 Msa0052550:CDS 35.0%
CATTGCTACTGCAAAATCAT+GGG + chr1_2:6848216-6848235 Msa0052550:CDS 35.0%
AAGAAGCCATTCAACTTACA+GGG - chr1_2:6848252-6848271 None:intergenic 35.0%
TAAGAAGCCATTCAACTTAC+AGG - chr1_2:6848253-6848272 None:intergenic 35.0%
GTGAAGCTTATTGCATTACT+TGG + chr1_2:6848274-6848293 Msa0052550:intron 35.0%
AAGATAGTTAGTCGTGTCAT+GGG - chr1_2:6848698-6848717 None:intergenic 35.0%
AAAGATAGTTAGTCGTGTCA+TGG - chr1_2:6848699-6848718 None:intergenic 35.0%
GACAGCTGCATTTAATTCAT+AGG + chr1_2:6849432-6849451 Msa0052550:intron 35.0%
!!! TTGAACTTTGAGACCACTTT+TGG + chr1_2:6849483-6849502 Msa0052550:intron 35.0%
AAACATGTCACCCTTACTAA+GGG - chr1_2:6849527-6849546 None:intergenic 35.0%
AAAACATGTCACCCTTACTA+AGG - chr1_2:6849528-6849547 None:intergenic 35.0%
GCAGATAGGAATTGCAATAA+GGG + chr1_2:6849618-6849637 Msa0052550:intron 35.0%
CAAAACCATAGTTAGGCAAA+TGG - chr1_2:6849657-6849676 None:intergenic 35.0%
!! GGTTTTGTATTAGTGAGTCT+TGG + chr1_2:6849670-6849689 Msa0052550:CDS 35.0%
ACTATTGTCAACTGGAAGAA+CGG - chr1_2:6849740-6849759 None:intergenic 35.0%
CTCTTCTTACTATTGTCAAC+TGG - chr1_2:6849748-6849767 None:intergenic 35.0%
! AAGTCCCTTTGAACTTTTTG+AGG + chr1_2:6849786-6849805 Msa0052550:CDS 35.0%
AGCTTCTCACATCATTAGTA+CGG + chr1_2:6849931-6849950 Msa0052550:intron 35.0%
TAGCAGATCATAGTGCAAAT+GGG - chr1_2:6850174-6850193 None:intergenic 35.0%
! TCAGATCACATGATGATGAA+AGG + chr1_2:6850217-6850236 Msa0052550:three_prime_UTR 35.0%
! AGCCATATCCAATCTCCTTT+TGG + chr1_2:6847010-6847029 Msa0052550:CDS 40.0%
CTCCAAAAGGAGATTGGATA+TGG - chr1_2:6847015-6847034 None:intergenic 40.0%
! CTTCTGGTGTTGAATTTAGG+TGG - chr1_2:6847206-6847225 None:intergenic 40.0%
! GTGCTTCTGGTGTTGAATTT+AGG - chr1_2:6847209-6847228 None:intergenic 40.0%
AAGATGCAAGGGTCTAATGA+AGG - chr1_2:6847231-6847250 None:intergenic 40.0%
TTGGCTAGTGTAAGATGCAA+GGG - chr1_2:6847242-6847261 None:intergenic 40.0%
TTTGGCTAGTGTAAGATGCA+AGG - chr1_2:6847243-6847262 None:intergenic 40.0%
!! GCAAAAGAAGAGGGTTTTGT+AGG - chr1_2:6847296-6847315 None:intergenic 40.0%
TGACAAGGATGTTCCATTAG+AGG + chr1_2:6847340-6847359 Msa0052550:CDS 40.0%
GACAAGGATGTTCCATTAGA+GGG + chr1_2:6847341-6847360 Msa0052550:CDS 40.0%
!!! GAGGGTTGTTGTTTTGTTGT+AGG + chr1_2:6847528-6847547 Msa0052550:intron 40.0%
! ACTGCTGATCCTTTTATAGC+TGG + chr1_2:6847656-6847675 Msa0052550:CDS 40.0%
GAATGCATGTCTAGCATGTT+TGG + chr1_2:6847822-6847841 Msa0052550:intron 40.0%
GCACCACCATTTCATATTGA+AGG + chr1_2:6847915-6847934 Msa0052550:intron 40.0%
CATCTTCACTAAAACCTCCA+AGG - chr1_2:6848165-6848184 None:intergenic 40.0%
!! CTTGGAGGTTTTAGTGAAGA+TGG + chr1_2:6848163-6848182 Msa0052550:CDS 40.0%
ACACAGCTACACTAATGCTA+GGG - chr1_2:6848334-6848353 None:intergenic 40.0%
AACACAGCTACACTAATGCT+AGG - chr1_2:6848335-6848354 None:intergenic 40.0%
AGATAGTTAGTCGTGTCATG+GGG - chr1_2:6848697-6848716 None:intergenic 40.0%
!!! AACAGCATGCTGATTTTTGC+AGG + chr1_2:6848776-6848795 Msa0052550:intron 40.0%
TTTCTCTCGCTTCAATTGTG+TGG - chr1_2:6849011-6849030 None:intergenic 40.0%
! CATAAATATGTGAGGCGTTC+AGG - chr1_2:6849210-6849229 None:intergenic 40.0%
! TCAGTTTTCAGCAAGATCAC+TGG - chr1_2:6849563-6849582 None:intergenic 40.0%
GGCAGATAGGAATTGCAATA+AGG + chr1_2:6849617-6849636 Msa0052550:intron 40.0%
TTCTCACATCATTAGTACGG+CGG + chr1_2:6849934-6849953 Msa0052550:CDS 40.0%
CTAGCAGATCATAGTGCAAA+TGG - chr1_2:6850175-6850194 None:intergenic 40.0%
CATTTGCACTATGATCTGCT+AGG + chr1_2:6850173-6850192 Msa0052550:three_prime_UTR 40.0%
! GATCACATGATGATGAAAGG+AGG + chr1_2:6850220-6850239 Msa0052550:three_prime_UTR 40.0%
CTTACACTAGCCAAAGCTGA+AGG + chr1_2:6847248-6847267 Msa0052550:CDS 45.0%
GTCTCTGTTTCCTTCAGCTT+TGG - chr1_2:6847261-6847280 None:intergenic 45.0%
GTTTGTATGCACGTCTGTGT+TGG + chr1_2:6847941-6847960 Msa0052550:intron 45.0%
CAGGTCTGCAACATCAATCT+CGG - chr1_2:6848024-6848043 None:intergenic 45.0%
GTTGGATGTGTTTCAATGGG+TGG + chr1_2:6848114-6848133 Msa0052550:intron 45.0%
ATGTGTTTCAATGGGTGGCA+GGG + chr1_2:6848119-6848138 Msa0052550:intron 45.0%
TTAGGTGCTTACTTCCTTGG+AGG + chr1_2:6848148-6848167 Msa0052550:CDS 45.0%
GGAATGAATGGTCTACCCAA+AGG + chr1_2:6848190-6848209 Msa0052550:CDS 45.0%
! ACTGCAAAATCATGGGCTGT+AGG + chr1_2:6848223-6848242 Msa0052550:CDS 45.0%
! CTGCAAAATCATGGGCTGTA+GGG + chr1_2:6848224-6848243 Msa0052550:CDS 45.0%
! AGGGATCCCTGTAAGTTGAA+TGG + chr1_2:6848243-6848262 Msa0052550:intron 45.0%
CCTTTGTTGCCAACTTTGTC+AGG - chr1_2:6848674-6848693 None:intergenic 45.0%
CCTGACAAAGTTGGCAACAA+AGG + chr1_2:6848671-6848690 Msa0052550:intron 45.0%
! GCAGGCCTAAAAGCTCTTTT+AGG + chr1_2:6848794-6848813 Msa0052550:intron 45.0%
! TTGATGATAGGGTCTTGTGC+AGG + chr1_2:6849062-6849081 Msa0052550:intron 45.0%
GCAATAAGGGCAGCAAAATC+AGG + chr1_2:6849631-6849650 Msa0052550:CDS 45.0%
TCAGGCCATTTGCCTAACTA+TGG + chr1_2:6849649-6849668 Msa0052550:CDS 45.0%
AAAGTTCAAAGGGACTTCCG+CGG - chr1_2:6849783-6849802 None:intergenic 45.0%
!! GGGTCTAATGAAGGTGCTTC+TGG - chr1_2:6847222-6847241 None:intergenic 50.0%
! GTTTGCTGGTGGTGATGTGT+TGG + chr1_2:6847562-6847581 Msa0052550:CDS 50.0%
! AAATGGGCTCATGCAGCCTT+AGG + chr1_2:6847887-6847906 Msa0052550:intron 50.0%
! AATGGGCTCATGCAGCCTTA+GGG + chr1_2:6847888-6847907 Msa0052550:intron 50.0%
!! AATGGTGGTGCTACACCCTA+AGG - chr1_2:6847906-6847925 None:intergenic 50.0%
GATGTGTTTCAATGGGTGGC+AGG + chr1_2:6848118-6848137 Msa0052550:intron 50.0%
!! GGTTTTAGTGAAGATGGGCG+TGG + chr1_2:6848169-6848188 Msa0052550:CDS 50.0%
GAAGATGGGCGTGGAATGAA+TGG + chr1_2:6848178-6848197 Msa0052550:CDS 50.0%
GCAGTAGCAATGACGCCTTT+GGG - chr1_2:6848208-6848227 None:intergenic 50.0%
TGCAGTAGCAATGACGCCTT+TGG - chr1_2:6848209-6848228 None:intergenic 50.0%
AAGAGTGATGTCTATCGCCG+CGG + chr1_2:6849763-6849782 Msa0052550:CDS 50.0%
TCACATCATTAGTACGGCGG+TGG + chr1_2:6849937-6849956 Msa0052550:CDS 50.0%
! AGGCGTGTAGCTCTGTTTGC+TGG + chr1_2:6847548-6847567 Msa0052550:intron 55.0%
! CGTGTAGCTCTGTTTGCTGG+TGG + chr1_2:6847551-6847570 Msa0052550:CDS 55.0%
TGTTTCAATGGGTGGCAGGG+TGG + chr1_2:6848122-6848141 Msa0052550:intron 55.0%
! TGGGTGGCAGGGTGGTTTTT+AGG + chr1_2:6848130-6848149 Msa0052550:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6846908 6850350 6846908 ID=Msa0052550;Name=Msa0052550
chr1_2 mRNA 6846908 6850350 6846908 ID=Msa0052550-mRNA-1;Parent=Msa0052550;Name=Msa0052550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=90|1|1|1|0.8|0.66|6|388|258
chr1_2 exon 6846908 6847039 6846908 ID=Msa0052550-mRNA-1:exon:2268;Parent=Msa0052550-mRNA-1
chr1_2 exon 6847140 6847417 6847140 ID=Msa0052550-mRNA-1:exon:2269;Parent=Msa0052550-mRNA-1
chr1_2 exon 6847550 6847677 6847550 ID=Msa0052550-mRNA-1:exon:2270;Parent=Msa0052550-mRNA-1
chr1_2 exon 6848140 6848252 6848140 ID=Msa0052550-mRNA-1:exon:2271;Parent=Msa0052550-mRNA-1
chr1_2 exon 6849622 6849807 6849622 ID=Msa0052550-mRNA-1:exon:2272;Parent=Msa0052550-mRNA-1
chr1_2 exon 6849933 6850350 6849933 ID=Msa0052550-mRNA-1:exon:2273;Parent=Msa0052550-mRNA-1
chr1_2 five_prime_UTR 6846908 6846997 6846908 ID=Msa0052550-mRNA-1:five_prime_utr;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6846998 6847039 6846998 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6847140 6847417 6847140 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6847550 6847677 6847550 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6848140 6848252 6848140 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6849622 6849807 6849622 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 CDS 6849933 6849962 6849933 ID=Msa0052550-mRNA-1:cds;Parent=Msa0052550-mRNA-1
chr1_2 three_prime_UTR 6849963 6850350 6849963 ID=Msa0052550-mRNA-1:three_prime_utr;Parent=Msa0052550-mRNA-1
Gene Sequence

>Msa0052550

ATGATACTTGTTAGCCATATCCAATCTCCTTTTGGAGCCATGTTTTCAAACTCTTCAACCAAATTCATCACTTCAATCTCTCCACAACAATTCTCCATTAATCAACCACCTAAATTCAACACCAGAAGCACCTTCATTAGACCCTTGCATCTTACACTAGCCAAAGCTGAAGGAAACAGAGACTCATCATCTTCACCTACAAAACCCTCTTCTTTTGCCAATGATCAAACTGTTTTTGTTGGTGACAAGGATGTTCCATTAGAGGGTGTTATTCAGTTTGACAAACCAAACAACTCTTCATCTCGTATTGAAAAATGGGGGCGTGTAGCTCTGTTTGCTGGTGGTGATGTGTTGGCTTTGCTTTTGTTTTCAACAATTGGAAGATATAGTCATGGACTGTCTGTTTTTGACTTTGAGACTCTGCACACTGCTGATCCTTTTATAGCTGGGTGGTTTTTAGGTGCTTACTTCCTTGGAGGTTTTAGTGAAGATGGGCGTGGAATGAATGGTCTACCCAAAGGCGTCATTGCTACTGCAAAATCATGGGCTGTAGGGATCCCTATAGGAATTGCAATAAGGGCAGCAAAATCAGGCCATTTGCCTAACTATGGTTTTGTATTAGTGAGTCTTGGAAGCACTGCTGTTTTACTAATCGCAGTCAGAGCTTTATTATACGCCGTTCTTCCAGTTGACAATAGTAAGAAGAGTGATGTCTATCGCCGCGGAAGTCCCTTTGAACTTTTTGAGCTTCTCACATCATTAGTACGGCGGTGGTAA

Protein sequence

>Msa0052550

MILVSHIQSPFGAMFSNSSTKFITSISPQQFSINQPPKFNTRSTFIRPLHLTLAKAEGNRDSSSSPTKPSSFANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAVLPVDNSKKSDVYRRGSPFELFELLTSLVRRW*