Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370500 | XP_013460855.1 | 98.844 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370500 | sp|Q9LM13|GPMA1_ARATH | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 8.90e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370500 | A0A072UYQ0 | 98.844 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021710 | Msa0370500 | -0.811518 | 6.725904e-51 | -8.615850e-47 |
| Msa0033590 | Msa0370500 | -0.804211 | 2.408204e-49 | -8.615850e-47 |
| Msa0052550 | Msa0370500 | -0.818303 | 2.102643e-52 | -8.615850e-47 |
| Msa0053210 | Msa0370500 | -0.802882 | 4.543005e-49 | -8.615850e-47 |
| Msa0089510 | Msa0370500 | -0.808329 | 3.266703e-50 | -8.615850e-47 |
| Msa0089520 | Msa0370500 | -0.808827 | 2.557695e-50 | -8.615850e-47 |
| Msa0098550 | Msa0370500 | -0.817619 | 3.001980e-52 | -8.615850e-47 |
| Msa0137010 | Msa0370500 | -0.808399 | 3.156868e-50 | -8.615850e-47 |
| Msa0160470 | Msa0370500 | -0.810437 | 1.153299e-50 | -8.615850e-47 |
| Msa0234120 | Msa0370500 | 0.805156 | 1.529230e-49 | -8.615850e-47 |
| Msa0367600 | Msa0370500 | -0.801318 | 9.526380e-49 | -8.615850e-47 |
| Msa0369100 | Msa0370500 | -0.837304 | 5.625014e-57 | -8.615850e-47 |
| Msa0369430 | Msa0370500 | -0.827542 | 1.476945e-54 | -8.615850e-47 |
| Msa0370500 | Msa0370690 | -0.805303 | 1.424683e-49 | -8.615850e-47 |
| Msa0370500 | Msa0376480 | -0.814814 | 1.271824e-51 | -8.615850e-47 |
| Msa0370500 | Msa0404070 | -0.814610 | 1.411306e-51 | -8.615850e-47 |
| Msa0370500 | Msa0417990 | 0.910993 | 1.004341e-82 | -8.615850e-47 |
| Msa0370500 | Msa0430040 | -0.818244 | 2.169243e-52 | -8.615850e-47 |
| Msa0370500 | Msa0444340 | -0.804753 | 1.856978e-49 | -8.615850e-47 |
| Msa0370500 | Msa0460220 | -0.809925 | 1.486760e-50 | -8.615850e-47 |
| Msa0370500 | Msa0463140 | -0.824803 | 6.623667e-54 | -8.615850e-47 |
| Msa0370500 | Msa0463150 | -0.842586 | 2.362777e-58 | -8.615850e-47 |
| Msa0370500 | Msa0463540 | -0.824149 | 9.440267e-54 | -8.615850e-47 |
| Msa0370500 | Msa0464510 | 0.873997 | 9.528376e-68 | -8.615850e-47 |
| Msa0370500 | Msa0481050 | -0.807343 | 5.294550e-50 | -8.615850e-47 |
| Msa0370500 | Msa0500490 | -0.807390 | 5.175458e-50 | -8.615850e-47 |
| Msa0370500 | Msa0603180 | -0.814520 | 1.477578e-51 | -8.615850e-47 |
| Msa0370500 | Msa0645120 | 0.804168 | 2.459255e-49 | -8.615850e-47 |
| Msa0370500 | Msa0654560 | -0.802042 | 6.768346e-49 | -8.615850e-47 |
| Msa0370500 | Msa0660070 | -0.810150 | 1.329689e-50 | -8.615850e-47 |
| Msa0370500 | Msa0679780 | -0.805216 | 1.486106e-49 | -8.615850e-47 |
| Msa0370500 | Msa0685520 | -0.825030 | 5.854859e-54 | -8.615850e-47 |
| Msa0370500 | Msa0701460 | -0.805747 | 1.149939e-49 | -8.615850e-47 |
| Msa0370500 | Msa0701530 | -0.811083 | 8.359521e-51 | -8.615850e-47 |
| Msa0370500 | Msa0705050 | -0.814231 | 1.711770e-51 | -8.615850e-47 |
| Msa0370500 | Msa0705810 | -0.815367 | 9.587715e-52 | -8.615850e-47 |
| Msa0370500 | Msa0747900 | -0.816509 | 5.332019e-52 | -8.615850e-47 |
| Msa0370500 | Msa0749160 | -0.834423 | 3.024189e-56 | -8.615850e-47 |
| Msa0370500 | Msa0752830 | -0.809912 | 1.496821e-50 | -8.615850e-47 |
| Msa0370500 | Msa0758150 | 0.804591 | 2.006790e-49 | -8.615850e-47 |
| Msa0370500 | Msa0813630 | -0.814914 | 1.208779e-51 | -8.615850e-47 |
| Msa0370500 | Msa0825960 | -0.815092 | 1.103360e-51 | -8.615850e-47 |
| Msa0370500 | Msa1030430 | -0.812359 | 4.410401e-51 | -8.615850e-47 |
| Msa0370500 | Msa1036020 | 0.827763 | 1.307019e-54 | -8.615850e-47 |
| Msa0370500 | Msa1067910 | -0.802864 | 4.582844e-49 | -8.615850e-47 |
| Msa0370500 | Msa1068900 | 0.830011 | 3.734614e-55 | -8.615850e-47 |
| Msa0370500 | Msa1069440 | -0.815316 | 9.840487e-52 | -8.615850e-47 |
| Msa0370500 | Msa1073140 | -0.811048 | 8.507922e-51 | -8.615850e-47 |
| Msa0370500 | Msa1076520 | -0.808999 | 2.349852e-50 | -8.615850e-47 |
| Msa0370500 | Msa1076530 | -0.812947 | 3.280539e-51 | -8.615850e-47 |
| Msa0370500 | Msa1085370 | -0.807182 | 5.726051e-50 | -8.615850e-47 |
| Msa0370500 | Msa1090180 | 0.819632 | 1.048942e-52 | -8.615850e-47 |
| Msa0370500 | Msa1121080 | 0.814374 | 1.592004e-51 | -8.615850e-47 |
| Msa0370500 | Msa1133440 | -0.809085 | 2.251859e-50 | -8.615850e-47 |
| Msa0370500 | Msa1144420 | -0.819210 | 1.309165e-52 | -8.615850e-47 |
| Msa0370500 | Msa1156670 | 0.836108 | 1.134962e-56 | -8.615850e-47 |
| Msa0370500 | Msa1239000 | -0.808529 | 2.961352e-50 | -8.615850e-47 |
| Msa0370500 | Msa1299310 | 0.808847 | 2.532804e-50 | -8.615850e-47 |
| Msa0370500 | Msa1355250 | 0.890147 | 1.281547e-73 | -8.615850e-47 |
| Msa0370500 | Msa1369180 | -0.816289 | 5.970038e-52 | -8.615850e-47 |
| Msa0370500 | Msa1395580 | -0.811987 | 5.318663e-51 | -8.615850e-47 |
| Msa0370500 | Msa1405380 | -0.803842 | 2.873603e-49 | -8.615850e-47 |
| Msa0370500 | Msa1466350 | -0.832899 | 7.264419e-56 | -8.615850e-47 |
| Msa0329060 | Msa0370500 | -0.816587 | 5.121062e-52 | -8.615850e-47 |
| Msa0349450 | Msa0370500 | -0.816995 | 4.147674e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370500 | MtrunA17_Chr3g0115581 | 98.844 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 0.0 | 706 |
| Msa0370500 | MtrunA17_Chr8g0382611 | 79.842 | 253 | 51 | 0 | 93 | 345 | 66 | 318 | 1.10e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370500 | AT1G22170.2 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 9.05e-179 | 499 |
| Msa0370500 | AT1G22170.1 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 9.05e-179 | 499 |
| Msa0370500 | AT1G78050.1 | 72.000 | 325 | 79 | 4 | 25 | 343 | 9 | 327 | 9.80e-172 | 481 |
Find 99 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTAAAGCTAGGTTATTT+TGG | 0.160093 | 3_1:+68316511 | Msa0370500:three_prime_UTR |
| ATACACCGCTTCTGATATTT+TGG | 0.174047 | 3_1:-68313604 | None:intergenic |
| ATTTATCATACTTGATTTCT+TGG | 0.211753 | 3_1:-68313795 | None:intergenic |
| ACGACTCACCGTGTCGAATA+AGG | 0.265042 | 3_1:-68314001 | None:intergenic |
| CTACCTTCTTACGGCGGTGC+TGG | 0.280926 | 3_1:-68314190 | None:intergenic |
| ACCTACTTGGTCTCTGAAAT+AGG | 0.318239 | 3_1:-68314831 | None:intergenic |
| ATATCAGAAGCGGTGTATTA+AGG | 0.323655 | 3_1:+68313609 | Msa0370500:CDS |
| CAAGAAACAGCAGACAGATA+TGG | 0.338348 | 3_1:+68314719 | Msa0370500:CDS |
| ATATATACCTGGTTTATATA+AGG | 0.344254 | 3_1:-68312856 | None:intergenic |
| GTATGACAGTATTTCCAAAT+TGG | 0.353070 | 3_1:-68316698 | None:intergenic |
| TTGCAATCTCATTCTCATCT+TGG | 0.370490 | 3_1:+68313566 | Msa0370500:CDS |
| ATTGAACCCCAACTTCTATC+TGG | 0.372989 | 3_1:+68315147 | Msa0370500:CDS |
| GAAGTATGTCACCATGCTAT+TGG | 0.383236 | 3_1:+68313539 | Msa0370500:CDS |
| TCAAAGAAGGACGATTCATT+AGG | 0.385935 | 3_1:+68315379 | Msa0370500:CDS |
| GATGTAAATATGAGATCAAC+TGG | 0.389772 | 3_1:-68314125 | None:intergenic |
| TAAAATGCATACCTTGGTAT+AGG | 0.393283 | 3_1:-68315442 | None:intergenic |
| TACAGCGTTTGGCTCTTTAC+AGG | 0.396467 | 3_1:+68316258 | Msa0370500:intron |
| AACCAAAATAACCTAGCTTT+AGG | 0.399557 | 3_1:-68316513 | None:intergenic |
| TCCTCCCAATGGTGAAAGTC+TGG | 0.399875 | 3_1:+68314784 | Msa0370500:CDS |
| CATTCTTTCCAGATAGAAGT+TGG | 0.400888 | 3_1:-68315155 | None:intergenic |
| GGAGTAACAGAAGAAGAAAA+AGG | 0.413275 | 3_1:-68312767 | None:intergenic |
| TTTGTCGAGATACATGATAA+TGG | 0.419771 | 3_1:-68315211 | None:intergenic |
| TGATTTCTTGGAAGTGTCAT+TGG | 0.426824 | 3_1:-68313783 | None:intergenic |
| ATTCTTTCCAGATAGAAGTT+GGG | 0.435809 | 3_1:-68315154 | None:intergenic |
| CAACAACTGACGTCTGTGAA+TGG | 0.445999 | 3_1:-68313730 | None:intergenic |
| GAAGAGAAGAGAAGAGAAGA+CGG | 0.449714 | 3_1:-68312788 | None:intergenic |
| AGTTGCCAAGCTGCTATGAC+TGG | 0.450681 | 3_1:-68314554 | None:intergenic |
| ATTAGTTTAGAACTGTCAAC+TGG | 0.450749 | 3_1:+68315336 | Msa0370500:CDS |
| TTTCAGGTATGGAGAACTAC+AGG | 0.452952 | 3_1:+68314685 | Msa0370500:intron |
| CTCTCGTTGTGCATAACAAT+AGG | 0.456310 | 3_1:-68314473 | None:intergenic |
| AAGAAACAGCAGACAGATAT+GGG | 0.456650 | 3_1:+68314720 | Msa0370500:CDS |
| TGCAGTAATGGCTTGTCAAA+GGG | 0.459448 | 3_1:+68313653 | Msa0370500:CDS |
| TCATTCTCGCTACCTTCTTA+CGG | 0.461824 | 3_1:-68314199 | None:intergenic |
| CTTACGGCGGTGCTGGGTCA+TGG | 0.466672 | 3_1:-68314183 | None:intergenic |
| TACCTTCTTACGGCGGTGCT+GGG | 0.479212 | 3_1:-68314189 | None:intergenic |
| CCCATAAAACCAACTGAAGC+GGG | 0.479434 | 3_1:+68315411 | Msa0370500:CDS |
| TCTTTGAAAATGTAAAGCAT+TGG | 0.479538 | 3_1:-68315363 | None:intergenic |
| GGCTCTTTACAGGCAGAAGT+TGG | 0.481694 | 3_1:+68316268 | Msa0370500:CDS |
| GTCGAGGGAAACGAAGTTGT+TGG | 0.483683 | 3_1:-68312725 | None:intergenic |
| AACAACTGACGTCTGTGAAT+GGG | 0.484469 | 3_1:-68313729 | None:intergenic |
| ATTTCCAGACTTTCACCATT+GGG | 0.485719 | 3_1:-68314788 | None:intergenic |
| CATAGCTTCGGCGCCACTCA+TGG | 0.486599 | 3_1:-68314754 | None:intergenic |
| ATAGATGAGGCAATTGAAGC+TGG | 0.487774 | 3_1:+68314083 | Msa0370500:CDS |
| AAGGGAATAAGTAGCCGCTT+TGG | 0.491574 | 3_1:+68313671 | Msa0370500:CDS |
| TTCGACACGGTGAGTCGTTG+TGG | 0.492540 | 3_1:+68314006 | Msa0370500:CDS |
| CATTTCCAGACTTTCACCAT+TGG | 0.497995 | 3_1:-68314789 | None:intergenic |
| ACAGACGTCAGTTGTTGATC+CGG | 0.498795 | 3_1:+68313736 | Msa0370500:CDS |
| TCTGTGAAGCTTCTGATCAA+TGG | 0.499485 | 3_1:-68316423 | None:intergenic |
| TTGTTCTCAGTATTACTGCT+AGG | 0.504027 | 3_1:+68316464 | Msa0370500:three_prime_UTR |
| AATGAGAAGAATTTGTTCAC+AGG | 0.510239 | 3_1:+68314029 | Msa0370500:CDS |
| CTGCAGTAATGGCTTGTCAA+AGG | 0.514800 | 3_1:+68313652 | Msa0370500:CDS |
| TGTATTAAGGTTGGCGACAA+AGG | 0.518818 | 3_1:+68313622 | Msa0370500:CDS |
| TTCTTTCCAGATAGAAGTTG+GGG | 0.521049 | 3_1:-68315153 | None:intergenic |
| GTGCTGGGTCATGGCAAGCA+TGG | 0.530804 | 3_1:-68314174 | None:intergenic |
| GAATTACAATACAATTCCTC+TGG | 0.533183 | 3_1:-68313694 | None:intergenic |
| GAGGAGGTATGTCATAGCTT+CGG | 0.535709 | 3_1:-68314766 | None:intergenic |
| AAGAAGGACGATTCATTAGG+AGG | 0.536110 | 3_1:+68315382 | Msa0370500:CDS |
| GACCCAGCACCGCCGTAAGA+AGG | 0.536334 | 3_1:+68314187 | Msa0370500:CDS |
| TACTGTAATACTTTCAGTTG+AGG | 0.540444 | 3_1:+68316654 | Msa0370500:three_prime_UTR |
| TTAGCACACATCCTAAAGCT+AGG | 0.547892 | 3_1:+68316502 | Msa0370500:three_prime_UTR |
| TCTATACCCTTCTTGCTAAG+TGG | 0.548267 | 3_1:-68314065 | None:intergenic |
| GCATAAACTCCCGCTTCAGT+TGG | 0.551044 | 3_1:-68315420 | None:intergenic |
| AGACTTTCACCATTGGGAGG+AGG | 0.552095 | 3_1:-68314782 | None:intergenic |
| CAGAAGCGGTGTATTAAGGT+TGG | 0.552496 | 3_1:+68313613 | Msa0370500:CDS |
| AGAAGGACGATTCATTAGGA+GGG | 0.554228 | 3_1:+68315383 | Msa0370500:CDS |
| AAGCTTCACAGATGAGTCAC+TGG | 0.556436 | 3_1:+68316434 | Msa0370500:three_prime_UTR |
| TCTCGACAAATTAACTTCCC+AGG | 0.565688 | 3_1:+68315224 | Msa0370500:CDS |
| TGTTCATGAACTTCAAAATG+TGG | 0.585106 | 3_1:+68316626 | Msa0370500:three_prime_UTR |
| TGATGTACCACTTAGCAAGA+AGG | 0.585970 | 3_1:+68314058 | Msa0370500:CDS |
| GAATAGCCCAATCACCTCCT+GGG | 0.586449 | 3_1:-68315241 | None:intergenic |
| CCATTCCAGTCATAGCAGCT+TGG | 0.588646 | 3_1:+68314549 | Msa0370500:CDS |
| CATCACCAAAATATCAGAAG+CGG | 0.592490 | 3_1:+68313599 | Msa0370500:CDS |
| AGAGTGAACAAGCAAAGGCA+TGG | 0.594259 | 3_1:+68314492 | Msa0370500:CDS |
| GAAGGACGATTCATTAGGAG+GGG | 0.594762 | 3_1:+68315384 | Msa0370500:CDS |
| TAAGTAGCCGCTTTGGCCAG+AGG | 0.595270 | 3_1:+68313678 | Msa0370500:CDS |
| TCCCATAAAACCAACTGAAG+CGG | 0.600695 | 3_1:+68315410 | Msa0370500:CDS |
| GATGTACCACTTAGCAAGAA+GGG | 0.602199 | 3_1:+68314059 | Msa0370500:CDS |
| TCCAGACTTTCACCATTGGG+AGG | 0.603226 | 3_1:-68314785 | None:intergenic |
| CCAAGCTGCTATGACTGGAA+TGG | 0.606063 | 3_1:-68314549 | None:intergenic |
| CAACGAGAGTGAACAAGCAA+AGG | 0.606715 | 3_1:+68314487 | Msa0370500:CDS |
| TGGTTAAGTCTCAACTCAAG+TGG | 0.615147 | 3_1:-68312705 | None:intergenic |
| TTCACAGATGAGTCACTGGT+GGG | 0.618785 | 3_1:+68316438 | Msa0370500:three_prime_UTR |
| TACAATTCCTCTGGCCAAAG+CGG | 0.621755 | 3_1:-68313685 | None:intergenic |
| CTTCACAGATGAGTCACTGG+TGG | 0.623297 | 3_1:+68316437 | Msa0370500:three_prime_UTR |
| ATGTTATGATTGCCGCACAC+GGG | 0.631044 | 3_1:+68315175 | Msa0370500:CDS |
| GGAAAGAACAAGTCCATGAG+TGG | 0.633002 | 3_1:+68314741 | Msa0370500:CDS |
| AATGTTATGATTGCCGCACA+CGG | 0.634751 | 3_1:+68315174 | Msa0370500:CDS |
| TAGCAAGAAGGGTATAGATG+AGG | 0.640367 | 3_1:+68314070 | Msa0370500:CDS |
| AAGGACGATTCATTAGGAGG+GGG | 0.648601 | 3_1:+68315385 | Msa0370500:CDS |
| TCTCAATGAATTCCCGTGTG+CGG | 0.651372 | 3_1:-68315187 | None:intergenic |
| TATGACATACCTCCTCCCAA+TGG | 0.657183 | 3_1:+68314773 | Msa0370500:CDS |
| TTCAGGTATGGAGAACTACA+GGG | 0.659499 | 3_1:+68314686 | Msa0370500:intron |
| GCTTTGATCCTTATTCGACA+CGG | 0.660091 | 3_1:+68313993 | Msa0370500:CDS |
| ACACTCACCTTATATAAACC+AGG | 0.661072 | 3_1:+68312849 | Msa0370500:five_prime_UTR |
| TGGTTTATATAAGGTGAGTG+TGG | 0.661156 | 3_1:-68312847 | None:intergenic |
| ATTGCAAAGAGCCAATAGCA+TGG | 0.664561 | 3_1:-68313550 | None:intergenic |
| TTCTCGCTACCTTCTTACGG+CGG | 0.686843 | 3_1:-68314196 | None:intergenic |
| GGGAGTTTATGCCTATACCA+AGG | 0.713980 | 3_1:+68315431 | Msa0370500:CDS |
| CGACAAATTAACTTCCCAGG+AGG | 0.718042 | 3_1:+68315227 | Msa0370500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTAATATAAATCTTAA+AGG | - | chr3_1:68315772-68315791 | None:intergenic | 10.0% |
| !!! | AAACATTAAGTCTAAAATAA+TGG | - | chr3_1:68312953-68312972 | None:intergenic | 15.0% |
| !! | ATATAAATCTAAATCAATTG+AGG | - | chr3_1:68313330-68313349 | None:intergenic | 15.0% |
| !! | AAAAAATGTGAACTTATAAT+AGG | + | chr3_1:68314882-68314901 | Msa0370500:intron | 15.0% |
| !! | CTAAAAAAATCATCTTAAAT+GGG | - | chr3_1:68315487-68315506 | None:intergenic | 15.0% |
| !!! | AGAAAGTTTTGATTTAAAAA+TGG | + | chr3_1:68315514-68315533 | Msa0370500:intron | 15.0% |
| !!! | TTCTAAAAATAATATGGTTT+AGG | + | chr3_1:68316299-68316318 | Msa0370500:exon | 15.0% |
| !! | ATATATACCTGGTTTATATA+AGG | - | chr3_1:68312859-68312878 | None:intergenic | 20.0% |
| !! | AAAAAGAGAAAATATATACC+TGG | - | chr3_1:68312870-68312889 | None:intergenic | 20.0% |
| !!! | TTTCATTATTTTTGCATCTA+AGG | + | chr3_1:68312908-68312927 | Msa0370500:intron | 20.0% |
| !!! | ACTAATATATAGATCTGTTT+TGG | + | chr3_1:68312986-68313005 | Msa0370500:intron | 20.0% |
| !!! | CTAATATATAGATCTGTTTT+GGG | + | chr3_1:68312987-68313006 | Msa0370500:intron | 20.0% |
| !! | TAAAGAATAAAAATGTTTCG+TGG | + | chr3_1:68313249-68313268 | Msa0370500:intron | 20.0% |
| !! | GATTTAGATTTATATTTCCA+TGG | + | chr3_1:68313335-68313354 | Msa0370500:intron | 20.0% |
| !!! | GTTTGAAATCTTTTAGATAA+TGG | + | chr3_1:68313511-68313530 | Msa0370500:intron | 20.0% |
| !! | ATTTATCATACTTGATTTCT+TGG | - | chr3_1:68313798-68313817 | None:intergenic | 20.0% |
| !! | TTAGAGAATATTAGTAAGTA+TGG | + | chr3_1:68314292-68314311 | Msa0370500:intron | 20.0% |
| !! | TTCATAATTATTATCCTTTC+AGG | + | chr3_1:68314669-68314688 | Msa0370500:intron | 20.0% |
| !!! | TATACATATTGTAACTTGTA+AGG | + | chr3_1:68315048-68315067 | Msa0370500:intron | 20.0% |
| !! | CCTAAAAAAATCATCTTAAA+TGG | - | chr3_1:68315488-68315507 | None:intergenic | 20.0% |
| !!! | CCATTTAAGATGATTTTTTT+AGG | + | chr3_1:68315485-68315504 | Msa0370500:intron | 20.0% |
| !!! | GAGATGTTCTAAAAATAATA+TGG | + | chr3_1:68316293-68316312 | Msa0370500:exon | 20.0% |
| !!! | ATATGCTATATTTTGATTCT+AGG | + | chr3_1:68316367-68316386 | Msa0370500:intron | 20.0% |
| !!! | TATGCTATATTTTGATTCTA+GGG | + | chr3_1:68316368-68316387 | Msa0370500:intron | 20.0% |
| !! | AGAACTTATGACATAAGTTT+TGG | + | chr3_1:68313010-68313029 | Msa0370500:intron | 25.0% |
| !! | GAACTTATGACATAAGTTTT+GGG | + | chr3_1:68313011-68313030 | Msa0370500:intron | 25.0% |
| ! | TAAGCTTATGAAAATTAAGC+CGG | - | chr3_1:68313066-68313085 | None:intergenic | 25.0% |
| !! | GCTTAATTTTCATAAGCTTA+TGG | + | chr3_1:68313066-68313085 | Msa0370500:intron | 25.0% |
| !!! | CAAACTATTTCTATAGCAAA+AGG | - | chr3_1:68313135-68313154 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGTCATATGAT+TGG | + | chr3_1:68313923-68313942 | Msa0370500:intron | 25.0% |
| !! | TACAACAAAGACTAATTTTC+TGG | - | chr3_1:68314387-68314406 | None:intergenic | 25.0% |
| ! | AGGAGAAGTTTCAAAAATTA+AGG | - | chr3_1:68314611-68314630 | None:intergenic | 25.0% |
| !! | AATTATTATCCTTTCAGGTA+TGG | + | chr3_1:68314674-68314693 | Msa0370500:intron | 25.0% |
| !!! | TCATAGTTAAGTGTTTTTTG+AGG | + | chr3_1:68314950-68314969 | Msa0370500:intron | 25.0% |
| ! | ATTCATTTACTACATTTGTC+TGG | - | chr3_1:68315000-68315019 | None:intergenic | 25.0% |
| !!! | AACTTGTAAGGTCAATTTTT+TGG | + | chr3_1:68315060-68315079 | Msa0370500:intron | 25.0% |
| !! | TCTTTGAAAATGTAAAGCAT+TGG | - | chr3_1:68315366-68315385 | None:intergenic | 25.0% |
| !! | ATGCTTTACATTTTCAAAGA+AGG | + | chr3_1:68315366-68315385 | Msa0370500:CDS | 25.0% |
| ! | AAAAATCATCTTAAATGGGA+CGG | - | chr3_1:68315483-68315502 | None:intergenic | 25.0% |
| ! | AAAAATGGATATTGTTTGTC+CGG | + | chr3_1:68315529-68315548 | Msa0370500:intron | 25.0% |
| !! | TCTATGTTTTATATTGCTAG+TGG | - | chr3_1:68315578-68315597 | None:intergenic | 25.0% |
| ! | TTGAATTTCATTCATGATTG+AGG | + | chr3_1:68315788-68315807 | Msa0370500:intron | 25.0% |
| ! | AATTCTACCAGAAAGAAAAA+GGG | - | chr3_1:68315889-68315908 | None:intergenic | 25.0% |
| ! | ATTAGGACTAGATTTATCTA+AGG | - | chr3_1:68315927-68315946 | None:intergenic | 25.0% |
| ! | AGGTATTACAACTTTCTATT+AGG | - | chr3_1:68315944-68315963 | None:intergenic | 25.0% |
| !!! | ATTTTGATCGAGAAAATCAA+CGG | - | chr3_1:68315971-68315990 | None:intergenic | 25.0% |
| ! | TAATATGGTTTAGGTAAACA+CGG | + | chr3_1:68316308-68316327 | Msa0370500:intron | 25.0% |
| ! | CATATTAATAGAGAACGAAA+AGG | - | chr3_1:68316352-68316371 | None:intergenic | 25.0% |
| !!! | ATAGTTTTGAACATGTGTAA+TGG | + | chr3_1:68316544-68316563 | Msa0370500:three_prime_UTR | 25.0% |
| ! | AGATAAATGTCCTAAAAAGT+TGG | - | chr3_1:68316581-68316600 | None:intergenic | 25.0% |
| ACATGTTCATAAACTGTTTC+CGG | + | chr3_1:68313044-68313063 | Msa0370500:intron | 30.0% | |
| ! | AATAAGGTGTTTATCCAGAA+AGG | + | chr3_1:68313199-68313218 | Msa0370500:intron | 30.0% |
| !! | ATGAGCTACTACTTTTCTTA+AGG | + | chr3_1:68313432-68313451 | Msa0370500:intron | 30.0% |
| ! | TTTGGTTTATATGAGACTAG+AGG | + | chr3_1:68313471-68313490 | Msa0370500:intron | 30.0% |
| ! | AAGGATTTTATCTGCAGTAA+TGG | + | chr3_1:68313641-68313660 | Msa0370500:CDS | 30.0% |
| GAATTACAATACAATTCCTC+TGG | - | chr3_1:68313697-68313716 | None:intergenic | 30.0% | |
| GCAACCAACAAAAATATACT+CGG | - | chr3_1:68313857-68313876 | None:intergenic | 30.0% | |
| ! | AATGAGAAGAATTTGTTCAC+AGG | + | chr3_1:68314029-68314048 | Msa0370500:CDS | 30.0% |
| GATGTAAATATGAGATCAAC+TGG | - | chr3_1:68314128-68314147 | None:intergenic | 30.0% | |
| AAACAAAATTTCCACCTACT+TGG | - | chr3_1:68314847-68314866 | None:intergenic | 30.0% | |
| TTAACTATGAAGTTCAACCA+GGG | - | chr3_1:68314940-68314959 | None:intergenic | 30.0% | |
| !!! | GTAAGGTCAATTTTTTGGTA+TGG | + | chr3_1:68315065-68315084 | Msa0370500:intron | 30.0% |
| TGGTTGAAGTTATCTTCATA+CGG | + | chr3_1:68315085-68315104 | Msa0370500:intron | 30.0% | |
| ATCTGCAATATTGGTATCAA+TGG | - | chr3_1:68315129-68315148 | None:intergenic | 30.0% | |
| ATTCTTTCCAGATAGAAGTT+GGG | - | chr3_1:68315157-68315176 | None:intergenic | 30.0% | |
| TTTGTCGAGATACATGATAA+TGG | - | chr3_1:68315214-68315233 | None:intergenic | 30.0% | |
| ACTAATAACCTGTCAAAAAG+CGG | - | chr3_1:68315322-68315341 | None:intergenic | 30.0% | |
| ! | ATTAGTTTAGAACTGTCAAC+TGG | + | chr3_1:68315336-68315355 | Msa0370500:CDS | 30.0% |
| TAAAATGCATACCTTGGTAT+AGG | - | chr3_1:68315445-68315464 | None:intergenic | 30.0% | |
| TTAAATGGGACGGAATATAA+AGG | - | chr3_1:68315473-68315492 | None:intergenic | 30.0% | |
| !! | CATAGAACATCAAAAGTGTT+TGG | + | chr3_1:68315592-68315611 | Msa0370500:intron | 30.0% |
| ACTTCTTGTAATCAAGTACT+AGG | + | chr3_1:68315710-68315729 | Msa0370500:intron | 30.0% | |
| TGAGAGTTTAGATCATATGT+TGG | + | chr3_1:68315741-68315760 | Msa0370500:intron | 30.0% | |
| TAAGCAAACATGTCAAACTA+AGG | - | chr3_1:68315844-68315863 | None:intergenic | 30.0% | |
| ! | TTCTTATCCCTTTTTCTTTC+TGG | + | chr3_1:68315879-68315898 | Msa0370500:intron | 30.0% |
| CAATTCTACCAGAAAGAAAA+AGG | - | chr3_1:68315890-68315909 | None:intergenic | 30.0% | |
| ! | TTTTGATCGAGAAAATCAAC+GGG | - | chr3_1:68315970-68315989 | None:intergenic | 30.0% |
| CTCGATCAAAATATTTCTCT+TGG | + | chr3_1:68315979-68315998 | Msa0370500:intron | 30.0% | |
| !!! | AATGACTGACACTTATTTTG+AGG | - | chr3_1:68316075-68316094 | None:intergenic | 30.0% |
| AATATGGTTTAGGTAAACAC+GGG | + | chr3_1:68316309-68316328 | Msa0370500:intron | 30.0% | |
| ! | ATCCTAAAGCTAGGTTATTT+TGG | + | chr3_1:68316511-68316530 | Msa0370500:three_prime_UTR | 30.0% |
| ! | AACCAAAATAACCTAGCTTT+AGG | - | chr3_1:68316516-68316535 | None:intergenic | 30.0% |
| !!! | TTTTGAAGTTCATGAACAAC+AGG | - | chr3_1:68316624-68316643 | None:intergenic | 30.0% |
| TGTTCATGAACTTCAAAATG+TGG | + | chr3_1:68316626-68316645 | Msa0370500:three_prime_UTR | 30.0% | |
| TACTGTAATACTTTCAGTTG+AGG | + | chr3_1:68316654-68316673 | Msa0370500:three_prime_UTR | 30.0% | |
| GTATGACAGTATTTCCAAAT+TGG | - | chr3_1:68316701-68316720 | None:intergenic | 30.0% | |
| GGAGTAACAGAAGAAGAAAA+AGG | - | chr3_1:68312770-68312789 | None:intergenic | 35.0% | |
| TGGTTTATATAAGGTGAGTG+TGG | - | chr3_1:68312850-68312869 | None:intergenic | 35.0% | |
| ACACTCACCTTATATAAACC+AGG | + | chr3_1:68312849-68312868 | Msa0370500:five_prime_UTR | 35.0% | |
| AGTTTGTACATAAACGCTTG+TGG | + | chr3_1:68313149-68313168 | Msa0370500:intron | 35.0% | |
| TGTGCTATAAGCTGCAAATA+AGG | + | chr3_1:68313183-68313202 | Msa0370500:intron | 35.0% | |
| ! | ACTCATATGAACTTGTTCCA+TGG | - | chr3_1:68313355-68313374 | None:intergenic | 35.0% |
| ! | GGAGTGTAAGCTAGTTATTT+TGG | + | chr3_1:68313453-68313472 | Msa0370500:intron | 35.0% |
| TTGCAATCTCATTCTCATCT+TGG | + | chr3_1:68313566-68313585 | Msa0370500:CDS | 35.0% | |
| CATCACCAAAATATCAGAAG+CGG | + | chr3_1:68313599-68313618 | Msa0370500:CDS | 35.0% | |
| ! | ATACACCGCTTCTGATATTT+TGG | - | chr3_1:68313607-68313626 | None:intergenic | 35.0% |
| ATATCAGAAGCGGTGTATTA+AGG | + | chr3_1:68313609-68313628 | Msa0370500:CDS | 35.0% | |
| !!! | ATTGGTGTTGCTTTTTGAAG+GGG | - | chr3_1:68313768-68313787 | None:intergenic | 35.0% |
| !!! | CATTGGTGTTGCTTTTTGAA+GGG | - | chr3_1:68313769-68313788 | None:intergenic | 35.0% |
| !!! | TCATTGGTGTTGCTTTTTGA+AGG | - | chr3_1:68313770-68313789 | None:intergenic | 35.0% |
| !! | TGATTTCTTGGAAGTGTCAT+TGG | - | chr3_1:68313786-68313805 | None:intergenic | 35.0% |
| !! | TGTGCCGAGTATATTTTTGT+TGG | + | chr3_1:68313850-68313869 | Msa0370500:intron | 35.0% |
| AAGAAACAGCAGACAGATAT+GGG | + | chr3_1:68314720-68314739 | Msa0370500:CDS | 35.0% | |
| ATTTCCAGACTTTCACCATT+GGG | - | chr3_1:68314791-68314810 | None:intergenic | 35.0% | |
| CTTAACTATGAAGTTCAACC+AGG | - | chr3_1:68314941-68314960 | None:intergenic | 35.0% | |
| TTCTTTCCAGATAGAAGTTG+GGG | - | chr3_1:68315156-68315175 | None:intergenic | 35.0% | |
| CATTCTTTCCAGATAGAAGT+TGG | - | chr3_1:68315158-68315177 | None:intergenic | 35.0% | |
| TAATAACCTGTCAAAAAGCG+GGG | - | chr3_1:68315320-68315339 | None:intergenic | 35.0% | |
| CTAATAACCTGTCAAAAAGC+GGG | - | chr3_1:68315321-68315340 | None:intergenic | 35.0% | |
| TCAAAGAAGGACGATTCATT+AGG | + | chr3_1:68315379-68315398 | Msa0370500:CDS | 35.0% | |
| GTCGTATAAAATGCATACCT+TGG | - | chr3_1:68315451-68315470 | None:intergenic | 35.0% | |
| ! | TTCTTTCTGGTAGAATTGCA+AGG | + | chr3_1:68315892-68315911 | Msa0370500:intron | 35.0% |
| !! | TGGCTTTCTAAGATGTTAGT+TGG | + | chr3_1:68315999-68316018 | Msa0370500:intron | 35.0% |
| AACCAAGTAAAGTCGTTAGT+GGG | - | chr3_1:68316239-68316258 | None:intergenic | 35.0% | |
| TAACCAAGTAAAGTCGTTAG+TGG | - | chr3_1:68316240-68316259 | None:intergenic | 35.0% | |
| TTGTTCTCAGTATTACTGCT+AGG | + | chr3_1:68316464-68316483 | Msa0370500:three_prime_UTR | 35.0% | |
| GTAAAAAACGAGTGCCAATT+TGG | + | chr3_1:68316684-68316703 | Msa0370500:three_prime_UTR | 35.0% | |
| TGGTTAAGTCTCAACTCAAG+TGG | - | chr3_1:68312708-68312727 | None:intergenic | 40.0% | |
| GAAGAGAAGAGAAGAGAAGA+CGG | - | chr3_1:68312791-68312810 | None:intergenic | 40.0% | |
| AGTACATCTTAGGTCCTTTC+TGG | - | chr3_1:68313216-68313235 | None:intergenic | 40.0% | |
| AAAGGACCTAAGATGTACTC+TGG | + | chr3_1:68313217-68313236 | Msa0370500:intron | 40.0% | |
| GAAGTATGTCACCATGCTAT+TGG | + | chr3_1:68313539-68313558 | Msa0370500:CDS | 40.0% | |
| ATTGCAAAGAGCCAATAGCA+TGG | - | chr3_1:68313553-68313572 | None:intergenic | 40.0% | |
| TGTATTAAGGTTGGCGACAA+AGG | + | chr3_1:68313622-68313641 | Msa0370500:CDS | 40.0% | |
| ! | TGCAGTAATGGCTTGTCAAA+GGG | + | chr3_1:68313653-68313672 | Msa0370500:CDS | 40.0% |
| AACAACTGACGTCTGTGAAT+GGG | - | chr3_1:68313732-68313751 | None:intergenic | 40.0% | |
| ! | TGTTGGTTGCTTCTTGAAGT+TGG | + | chr3_1:68313867-68313886 | Msa0370500:intron | 40.0% |
| AAGTTGGATCATCGAGTGTT+AGG | + | chr3_1:68313883-68313902 | Msa0370500:intron | 40.0% | |
| GCTTTGATCCTTATTCGACA+CGG | + | chr3_1:68313993-68314012 | Msa0370500:CDS | 40.0% | |
| TGATGTACCACTTAGCAAGA+AGG | + | chr3_1:68314058-68314077 | Msa0370500:CDS | 40.0% | |
| GATGTACCACTTAGCAAGAA+GGG | + | chr3_1:68314059-68314078 | Msa0370500:CDS | 40.0% | |
| TCTATACCCTTCTTGCTAAG+TGG | - | chr3_1:68314068-68314087 | None:intergenic | 40.0% | |
| ! | TAGCAAGAAGGGTATAGATG+AGG | + | chr3_1:68314070-68314089 | Msa0370500:CDS | 40.0% |
| ATAGATGAGGCAATTGAAGC+TGG | + | chr3_1:68314083-68314102 | Msa0370500:CDS | 40.0% | |
| TCATTCTCGCTACCTTCTTA+CGG | - | chr3_1:68314202-68314221 | None:intergenic | 40.0% | |
| !! | TTAACCATTAACTTGCCTGC+AGG | + | chr3_1:68314448-68314467 | Msa0370500:intron | 40.0% |
| CTCTCGTTGTGCATAACAAT+AGG | - | chr3_1:68314476-68314495 | None:intergenic | 40.0% | |
| TGCTATTCAGCACGTTGTAA+AGG | - | chr3_1:68314631-68314650 | None:intergenic | 40.0% | |
| TTACAACGTGCTGAATAGCA+CGG | + | chr3_1:68314631-68314650 | Msa0370500:intron | 40.0% | |
| TGTAGTTCTCCATACCTGAA+AGG | - | chr3_1:68314686-68314705 | None:intergenic | 40.0% | |
| ! | TTTCAGGTATGGAGAACTAC+AGG | + | chr3_1:68314685-68314704 | Msa0370500:intron | 40.0% |
| TTCAGGTATGGAGAACTACA+GGG | + | chr3_1:68314686-68314705 | Msa0370500:intron | 40.0% | |
| CAAGAAACAGCAGACAGATA+TGG | + | chr3_1:68314719-68314738 | Msa0370500:CDS | 40.0% | |
| CATTTCCAGACTTTCACCAT+TGG | - | chr3_1:68314792-68314811 | None:intergenic | 40.0% | |
| !! | ACCTACTTGGTCTCTGAAAT+AGG | - | chr3_1:68314834-68314853 | None:intergenic | 40.0% |
| TATTTCAGAGACCAAGTAGG+TGG | + | chr3_1:68314833-68314852 | Msa0370500:intron | 40.0% | |
| AAGTTCAACCAGGGAAAATG+GGG | - | chr3_1:68314931-68314950 | None:intergenic | 40.0% | |
| GAAGTTCAACCAGGGAAAAT+GGG | - | chr3_1:68314932-68314951 | None:intergenic | 40.0% | |
| TGAAGTTCAACCAGGGAAAA+TGG | - | chr3_1:68314933-68314952 | None:intergenic | 40.0% | |
| TGGGGTTCAATCTGCAATAT+TGG | - | chr3_1:68315138-68315157 | None:intergenic | 40.0% | |
| ATTGAACCCCAACTTCTATC+TGG | + | chr3_1:68315147-68315166 | Msa0370500:CDS | 40.0% | |
| AATGTTATGATTGCCGCACA+CGG | + | chr3_1:68315174-68315193 | Msa0370500:CDS | 40.0% | |
| TCTCGACAAATTAACTTCCC+AGG | + | chr3_1:68315224-68315243 | Msa0370500:CDS | 40.0% | |
| !!! | ATTTTTCCCCGCTTTTTGAC+AGG | + | chr3_1:68315311-68315330 | Msa0370500:intron | 40.0% |
| AAGAAGGACGATTCATTAGG+AGG | + | chr3_1:68315382-68315401 | Msa0370500:CDS | 40.0% | |
| AGAAGGACGATTCATTAGGA+GGG | + | chr3_1:68315383-68315402 | Msa0370500:CDS | 40.0% | |
| TCCCATAAAACCAACTGAAG+CGG | + | chr3_1:68315410-68315429 | Msa0370500:CDS | 40.0% | |
| ATGGATATTGTTTGTCCGGA+AGG | + | chr3_1:68315533-68315552 | Msa0370500:intron | 40.0% | |
| TAAGTGTCAGTCATTGACGT+CGG | + | chr3_1:68316080-68316099 | Msa0370500:intron | 40.0% | |
| !! | CTGATGCTCTAAAATGATGC+TGG | + | chr3_1:68316160-68316179 | Msa0370500:intron | 40.0% |
| CTTTACTTGGTTACAGCGTT+TGG | + | chr3_1:68316247-68316266 | Msa0370500:intron | 40.0% | |
| TCTGTGAAGCTTCTGATCAA+TGG | - | chr3_1:68316426-68316445 | None:intergenic | 40.0% | |
| TTAGCACACATCCTAAAGCT+AGG | + | chr3_1:68316502-68316521 | Msa0370500:three_prime_UTR | 40.0% | |
| ! | AGACCAGCTTCCAACTTTTT+AGG | + | chr3_1:68316568-68316587 | Msa0370500:three_prime_UTR | 40.0% |
| TGTCCTAAAAAGTTGGAAGC+TGG | - | chr3_1:68316574-68316593 | None:intergenic | 40.0% | |
| !! | GATTCGAAAAAGAGCGTCGA+GGG | - | chr3_1:68312743-68312762 | None:intergenic | 45.0% |
| !! | TGATTCGAAAAAGAGCGTCG+AGG | - | chr3_1:68312744-68312763 | None:intergenic | 45.0% |
| TCGAGACCAGAGTACATCTT+AGG | - | chr3_1:68313226-68313245 | None:intergenic | 45.0% | |
| CAGAAGCGGTGTATTAAGGT+TGG | + | chr3_1:68313613-68313632 | Msa0370500:CDS | 45.0% | |
| ! | CTGCAGTAATGGCTTGTCAA+AGG | + | chr3_1:68313652-68313671 | Msa0370500:CDS | 45.0% |
| AAGGGAATAAGTAGCCGCTT+TGG | + | chr3_1:68313671-68313690 | Msa0370500:CDS | 45.0% | |
| TACAATTCCTCTGGCCAAAG+CGG | - | chr3_1:68313688-68313707 | None:intergenic | 45.0% | |
| CAACAACTGACGTCTGTGAA+TGG | - | chr3_1:68313733-68313752 | None:intergenic | 45.0% | |
| ACAGACGTCAGTTGTTGATC+CGG | + | chr3_1:68313736-68313755 | Msa0370500:CDS | 45.0% | |
| !! | CTTTTTGAAGGGGACAACAC+CGG | - | chr3_1:68313758-68313777 | None:intergenic | 45.0% |
| TGGATCATCGAGTGTTAGGT+TGG | + | chr3_1:68313887-68313906 | Msa0370500:intron | 45.0% | |
| CAAAGCTGCTTCATCTGAGT+TGG | - | chr3_1:68313979-68313998 | None:intergenic | 45.0% | |
| CAACGAGAGTGAACAAGCAA+AGG | + | chr3_1:68314487-68314506 | Msa0370500:CDS | 45.0% | |
| AGAGTGAACAAGCAAAGGCA+TGG | + | chr3_1:68314492-68314511 | Msa0370500:CDS | 45.0% | |
| GGAAAGAACAAGTCCATGAG+TGG | + | chr3_1:68314741-68314760 | Msa0370500:CDS | 45.0% | |
| ! | GAGGAGGTATGTCATAGCTT+CGG | - | chr3_1:68314769-68314788 | None:intergenic | 45.0% |
| TATGACATACCTCCTCCCAA+TGG | + | chr3_1:68314773-68314792 | Msa0370500:CDS | 45.0% | |
| GCCTATTTCAGAGACCAAGT+AGG | + | chr3_1:68314830-68314849 | Msa0370500:intron | 45.0% | |
| ATGTTATGATTGCCGCACAC+GGG | + | chr3_1:68315175-68315194 | Msa0370500:CDS | 45.0% | |
| TCTCAATGAATTCCCGTGTG+CGG | - | chr3_1:68315190-68315209 | None:intergenic | 45.0% | |
| CGACAAATTAACTTCCCAGG+AGG | + | chr3_1:68315227-68315246 | Msa0370500:CDS | 45.0% | |
| TTAACTTCCCAGGAGGTGAT+TGG | + | chr3_1:68315234-68315253 | Msa0370500:intron | 45.0% | |
| TAACTTCCCAGGAGGTGATT+GGG | + | chr3_1:68315235-68315254 | Msa0370500:intron | 45.0% | |
| GAAGGACGATTCATTAGGAG+GGG | + | chr3_1:68315384-68315403 | Msa0370500:CDS | 45.0% | |
| AAGGACGATTCATTAGGAGG+GGG | + | chr3_1:68315385-68315404 | Msa0370500:CDS | 45.0% | |
| !!! | CCCGCTTCAGTTGGTTTTAT+GGG | - | chr3_1:68315414-68315433 | None:intergenic | 45.0% |
| CCCATAAAACCAACTGAAGC+GGG | + | chr3_1:68315411-68315430 | Msa0370500:CDS | 45.0% | |
| !!! | TCCCGCTTCAGTTGGTTTTA+TGG | - | chr3_1:68315415-68315434 | None:intergenic | 45.0% |
| GGGAGTTTATGCCTATACCA+AGG | + | chr3_1:68315431-68315450 | Msa0370500:CDS | 45.0% | |
| CTTCATGTCGCTATGTGCTA+TGG | + | chr3_1:68315631-68315650 | Msa0370500:intron | 45.0% | |
| TCGAGAAAATCAACGGGTCA+AGG | - | chr3_1:68315964-68315983 | None:intergenic | 45.0% | |
| TGCCCACTAACGACTTTACT+TGG | + | chr3_1:68316234-68316253 | Msa0370500:intron | 45.0% | |
| !! | TACAGCGTTTGGCTCTTTAC+AGG | + | chr3_1:68316258-68316277 | Msa0370500:intron | 45.0% |
| ! | TCTAGGGCTGTTTGACTTTC+AGG | + | chr3_1:68316384-68316403 | Msa0370500:intron | 45.0% |
| AAGCTTCACAGATGAGTCAC+TGG | + | chr3_1:68316434-68316453 | Msa0370500:three_prime_UTR | 45.0% | |
| TTCACAGATGAGTCACTGGT+GGG | + | chr3_1:68316438-68316457 | Msa0370500:three_prime_UTR | 45.0% | |
| GTCGAGGGAAACGAAGTTGT+TGG | - | chr3_1:68312728-68312747 | None:intergenic | 50.0% | |
| TGAGTGTGGCGAGAAAAACG+AGG | - | chr3_1:68312836-68312855 | None:intergenic | 50.0% | |
| ACGACTCACCGTGTCGAATA+AGG | - | chr3_1:68314004-68314023 | None:intergenic | 50.0% | |
| TTCTCGCTACCTTCTTACGG+CGG | - | chr3_1:68314199-68314218 | None:intergenic | 50.0% | |
| GCATAACAATAGGCACCTGC+AGG | - | chr3_1:68314466-68314485 | None:intergenic | 50.0% | |
| CCAAGCTGCTATGACTGGAA+TGG | - | chr3_1:68314552-68314571 | None:intergenic | 50.0% | |
| CCATTCCAGTCATAGCAGCT+TGG | + | chr3_1:68314549-68314568 | Msa0370500:CDS | 50.0% | |
| AGTTGCCAAGCTGCTATGAC+TGG | - | chr3_1:68314557-68314576 | None:intergenic | 50.0% | |
| AGACTTTCACCATTGGGAGG+AGG | - | chr3_1:68314785-68314804 | None:intergenic | 50.0% | |
| TCCTCCCAATGGTGAAAGTC+TGG | + | chr3_1:68314784-68314803 | Msa0370500:CDS | 50.0% | |
| TCCAGACTTTCACCATTGGG+AGG | - | chr3_1:68314788-68314807 | None:intergenic | 50.0% | |
| TTCAACCAGGGAAAATGGGG+TGG | - | chr3_1:68314928-68314947 | None:intergenic | 50.0% | |
| GAATAGCCCAATCACCTCCT+GGG | - | chr3_1:68315244-68315263 | None:intergenic | 50.0% | |
| TGAATAGCCCAATCACCTCC+TGG | - | chr3_1:68315245-68315264 | None:intergenic | 50.0% | |
| GCATAAACTCCCGCTTCAGT+TGG | - | chr3_1:68315423-68315442 | None:intergenic | 50.0% | |
| GGCTCTTTACAGGCAGAAGT+TGG | + | chr3_1:68316268-68316287 | Msa0370500:CDS | 50.0% | |
| CTTCACAGATGAGTCACTGG+TGG | + | chr3_1:68316437-68316456 | Msa0370500:three_prime_UTR | 50.0% | |
| TGGCGAGAAAAACGAGGTGG+AGG | - | chr3_1:68312830-68312849 | None:intergenic | 55.0% | |
| GTGTGGCGAGAAAAACGAGG+TGG | - | chr3_1:68312833-68312852 | None:intergenic | 55.0% | |
| ! | TAAGTAGCCGCTTTGGCCAG+AGG | + | chr3_1:68313678-68313697 | Msa0370500:CDS | 55.0% |
| TTCGACACGGTGAGTCGTTG+TGG | + | chr3_1:68314006-68314025 | Msa0370500:CDS | 55.0% | |
| TACCTTCTTACGGCGGTGCT+GGG | - | chr3_1:68314192-68314211 | None:intergenic | 55.0% | |
| GGCACCTGCAGGCAAGTTAA+TGG | - | chr3_1:68314455-68314474 | None:intergenic | 55.0% | |
| GGGAAAATGGGGTGGAAGTG+CGG | - | chr3_1:68314920-68314939 | None:intergenic | 55.0% | |
| ! | CACTTCCACCCCATTTTCCC+TGG | + | chr3_1:68314920-68314939 | Msa0370500:intron | 55.0% |
| GTTTGTCCGGAAGGTTGCAG+TGG | + | chr3_1:68315542-68315561 | Msa0370500:intron | 55.0% | |
| ! | CAAGTGCCACTGCAACCTTC+CGG | - | chr3_1:68315551-68315570 | None:intergenic | 55.0% |
| GTGCTGGGTCATGGCAAGCA+TGG | - | chr3_1:68314177-68314196 | None:intergenic | 60.0% | |
| CTACCTTCTTACGGCGGTGC+TGG | - | chr3_1:68314193-68314212 | None:intergenic | 60.0% | |
| CATAGCTTCGGCGCCACTCA+TGG | - | chr3_1:68314757-68314776 | None:intergenic | 60.0% | |
| ! | CTTACGGCGGTGCTGGGTCA+TGG | - | chr3_1:68314186-68314205 | None:intergenic | 65.0% |
| GACCCAGCACCGCCGTAAGA+AGG | + | chr3_1:68314187-68314206 | Msa0370500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 68312695 | 68316762 | 68312695 | ID=Msa0370500;Name=Msa0370500 |
| chr3_1 | mRNA | 68312695 | 68316762 | 68312695 | ID=Msa0370500-mRNA-1;Parent=Msa0370500;Name=Msa0370500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=179|1|1|1|0.75|0.55|9|373|346 |
| chr3_1 | exon | 68312695 | 68312870 | 68312695 | ID=Msa0370500-mRNA-1:exon:14311;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68313527 | 68313806 | 68313527 | ID=Msa0370500-mRNA-1:exon:14312;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68313985 | 68314208 | 68313985 | ID=Msa0370500-mRNA-1:exon:14313;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68314470 | 68314588 | 68314470 | ID=Msa0370500-mRNA-1:exon:14314;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68314691 | 68314847 | 68314691 | ID=Msa0370500-mRNA-1:exon:14315;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68315147 | 68315248 | 68315147 | ID=Msa0370500-mRNA-1:exon:14316;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68315333 | 68315452 | 68315333 | ID=Msa0370500-mRNA-1:exon:14317;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68316263 | 68316320 | 68316263 | ID=Msa0370500-mRNA-1:exon:14318;Parent=Msa0370500-mRNA-1 |
| chr3_1 | exon | 68316406 | 68316762 | 68316406 | ID=Msa0370500-mRNA-1:exon:14319;Parent=Msa0370500-mRNA-1 |
| chr3_1 | five_prime_UTR | 68312695 | 68312870 | 68312695 | ID=Msa0370500-mRNA-1:five_prime_utr;Parent=Msa0370500-mRNA-1 |
| chr3_1 | five_prime_UTR | 68313527 | 68313529 | 68313527 | ID=Msa0370500-mRNA-1:five_prime_utr;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68313530 | 68313806 | 68313530 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68313985 | 68314208 | 68313985 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68314470 | 68314588 | 68314470 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68314691 | 68314847 | 68314691 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68315147 | 68315248 | 68315147 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68315333 | 68315452 | 68315333 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | CDS | 68316263 | 68316304 | 68316263 | ID=Msa0370500-mRNA-1:cds;Parent=Msa0370500-mRNA-1 |
| chr3_1 | three_prime_UTR | 68316305 | 68316320 | 68316305 | ID=Msa0370500-mRNA-1:three_prime_utr;Parent=Msa0370500-mRNA-1 |
| chr3_1 | three_prime_UTR | 68316406 | 68316762 | 68316406 | ID=Msa0370500-mRNA-1:three_prime_utr;Parent=Msa0370500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
