Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158600 | XP_013449497.1 | 93.092 | 304 | 20 | 1 | 1 | 304 | 1 | 303 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158600 | sp|O27352|DNAJ_METTH | 55.556 | 90 | 33 | 2 | 53 | 138 | 3 | 89 | 9.60e-20 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158600 | A0A072UCE8 | 93.092 | 304 | 20 | 1 | 1 | 304 | 1 | 303 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa1158600 | 0.801851 | 7.408669e-49 | -8.615850e-47 |
| Msa0024500 | Msa1158600 | 0.805864 | 1.086724e-49 | -8.615850e-47 |
| Msa0033840 | Msa1158600 | 0.820117 | 8.126083e-53 | -8.615850e-47 |
| Msa0037180 | Msa1158600 | -0.828305 | 9.681992e-55 | -8.615850e-47 |
| Msa0040860 | Msa1158600 | 0.802522 | 5.390369e-49 | -8.615850e-47 |
| Msa0065670 | Msa1158600 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0075990 | Msa1158600 | 0.817180 | 3.769750e-52 | -8.615850e-47 |
| Msa0081610 | Msa1158600 | 0.815725 | 7.979220e-52 | -8.615850e-47 |
| Msa0610700 | Msa1158600 | 0.862739 | 4.092978e-64 | -8.615850e-47 |
| Msa0646410 | Msa1158600 | 0.814575 | 1.436628e-51 | -8.615850e-47 |
| Msa0671300 | Msa1158600 | 0.805489 | 1.302117e-49 | -8.615850e-47 |
| Msa0693340 | Msa1158600 | 0.848183 | 7.211404e-60 | -8.615850e-47 |
| Msa0745140 | Msa1158600 | -0.809604 | 1.743214e-50 | -8.615850e-47 |
| Msa0769910 | Msa1158600 | 0.801620 | 8.261152e-49 | -8.615850e-47 |
| Msa0776640 | Msa1158600 | -0.811750 | 5.989474e-51 | -8.615850e-47 |
| Msa0805390 | Msa1158600 | -0.804200 | 2.421618e-49 | -8.615850e-47 |
| Msa0807100 | Msa1158600 | 0.802734 | 4.875502e-49 | -8.615850e-47 |
| Msa0825920 | Msa1158600 | -0.809342 | 1.984331e-50 | -8.615850e-47 |
| Msa0832520 | Msa1158600 | -0.804061 | 2.588093e-49 | -8.615850e-47 |
| Msa0168770 | Msa1158600 | 0.808036 | 3.772261e-50 | -8.615850e-47 |
| Msa0173950 | Msa1158600 | 0.815479 | 9.050146e-52 | -8.615850e-47 |
| Msa0177320 | Msa1158600 | -0.842068 | 3.240563e-58 | -8.615850e-47 |
| Msa0216150 | Msa1158600 | 0.806301 | 8.793282e-50 | -8.615850e-47 |
| Msa0386880 | Msa1158600 | -0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0412790 | Msa1158600 | -0.811110 | 8.248087e-51 | -8.615850e-47 |
| Msa0456450 | Msa1158600 | 0.800018 | 1.754238e-48 | -8.615850e-47 |
| Msa0476600 | Msa1158600 | 0.807138 | 5.851366e-50 | -8.615850e-47 |
| Msa1088400 | Msa1158600 | 0.808566 | 2.907781e-50 | -8.615850e-47 |
| Msa0256540 | Msa1158600 | -0.821176 | 4.641505e-53 | -8.615850e-47 |
| Msa0267510 | Msa1158600 | 0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa0326710 | Msa1158600 | -0.818354 | 2.047515e-52 | -8.615850e-47 |
| Msa0334450 | Msa1158600 | 0.835818 | 1.344312e-56 | -8.615850e-47 |
| Msa1129120 | Msa1158600 | 0.802757 | 4.820345e-49 | -8.615850e-47 |
| Msa1158600 | Msa1266120 | 0.803736 | 3.023090e-49 | -8.615850e-47 |
| Msa1158600 | Msa1326780 | 0.802099 | 6.587968e-49 | -8.615850e-47 |
| Msa1158600 | Msa1368390 | -0.820150 | 7.986980e-53 | -8.615850e-47 |
| Msa1158600 | Msa1388720 | 0.803975 | 2.697466e-49 | -8.615850e-47 |
| Msa1158600 | Msa1414780 | 0.822273 | 2.587275e-53 | -8.615850e-47 |
| Msa1158600 | Msa1453430 | -0.800569 | 1.355429e-48 | -8.615850e-47 |
| Msa0559450 | Msa1158600 | 0.808216 | 3.453387e-50 | -8.615850e-47 |
| Msa0576020 | Msa1158600 | 0.805928 | 1.053457e-49 | -8.615850e-47 |
| Msa0579070 | Msa1158600 | 0.828876 | 7.043868e-55 | -8.615850e-47 |
| Msa0842750 | Msa1158600 | -0.812368 | 4.392282e-51 | -8.615850e-47 |
| Msa0865420 | Msa1158600 | -0.801399 | 9.171520e-49 | -8.615850e-47 |
| Msa0865450 | Msa1158600 | -0.802160 | 6.400585e-49 | -8.615850e-47 |
| Msa0969380 | Msa1158600 | -0.803249 | 3.814839e-49 | -8.615850e-47 |
| Msa0969720 | Msa1158600 | -0.802098 | 6.590704e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158600 | MtrunA17_Chr7g0253281 | 93.092 | 304 | 20 | 1 | 1 | 304 | 1 | 303 | 0.0 | 571 |
| Msa1158600 | MtrunA17_Chr3g0123861 | 39.474 | 114 | 69 | 0 | 55 | 168 | 82 | 195 | 3.41e-17 | 81.6 |
| Msa1158600 | MtrunA17_Chr2g0333221 | 42.268 | 97 | 44 | 1 | 21 | 117 | 48 | 132 | 2.90e-16 | 79.0 |
| Msa1158600 | MtrunA17_Chr2g0328581 | 35.664 | 143 | 75 | 3 | 11 | 139 | 19 | 158 | 9.54e-16 | 74.3 |
| Msa1158600 | MtrunA17_Chr6g0478651 | 48.193 | 83 | 41 | 1 | 37 | 117 | 48 | 130 | 3.35e-14 | 72.8 |
| Msa1158600 | MtrunA17_Chr5g0426951 | 31.724 | 145 | 87 | 4 | 4 | 147 | 38 | 171 | 8.34e-13 | 68.6 |
| Msa1158600 | MtrunA17_Chr3g0087741 | 45.205 | 73 | 36 | 2 | 55 | 126 | 89 | 158 | 1.21e-11 | 65.1 |
| Msa1158600 | MtrunA17_Chr2g0295821 | 32.174 | 115 | 66 | 2 | 14 | 117 | 53 | 166 | 2.89e-11 | 63.5 |
| Msa1158600 | MtrunA17_Chr7g0263971 | 43.421 | 76 | 41 | 1 | 44 | 117 | 358 | 433 | 3.88e-11 | 63.5 |
| Msa1158600 | MtrunA17_Chr1g0206121 | 41.975 | 81 | 46 | 1 | 36 | 116 | 17 | 96 | 4.21e-11 | 62.8 |
| Msa1158600 | MtrunA17_Chr4g0010781 | 42.157 | 102 | 50 | 4 | 36 | 131 | 62 | 160 | 4.64e-11 | 63.2 |
| Msa1158600 | MtrunA17_Chr7g0242951 | 48.387 | 62 | 32 | 0 | 55 | 116 | 27 | 88 | 4.82e-11 | 63.2 |
| Msa1158600 | MtrunA17_Chr8g0371891 | 39.175 | 97 | 52 | 2 | 32 | 125 | 28 | 120 | 4.96e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158600 | AT5G18140.1 | 48.494 | 332 | 138 | 7 | 3 | 302 | 1 | 331 | 9.34e-95 | 283 |
| Msa1158600 | AT1G80030.4 | 50.575 | 87 | 32 | 1 | 31 | 117 | 62 | 137 | 1.15e-17 | 83.6 |
| Msa1158600 | AT1G80030.2 | 50.575 | 87 | 32 | 1 | 31 | 117 | 62 | 137 | 1.26e-17 | 83.6 |
| Msa1158600 | AT1G80030.3 | 50.575 | 87 | 32 | 1 | 31 | 117 | 62 | 137 | 1.26e-17 | 83.6 |
| Msa1158600 | AT1G80030.1 | 50.575 | 87 | 32 | 1 | 31 | 117 | 62 | 137 | 1.26e-17 | 83.6 |
| Msa1158600 | AT2G22360.1 | 58.730 | 63 | 26 | 0 | 55 | 117 | 86 | 148 | 9.93e-17 | 80.5 |
| Msa1158600 | AT4G39960.1 | 57.143 | 63 | 27 | 0 | 55 | 117 | 85 | 147 | 4.48e-16 | 78.6 |
| Msa1158600 | AT4G39960.2 | 57.143 | 63 | 27 | 0 | 55 | 117 | 85 | 147 | 4.48e-16 | 78.6 |
| Msa1158600 | AT3G17830.1 | 57.143 | 63 | 27 | 0 | 55 | 117 | 63 | 125 | 4.83e-15 | 75.9 |
| Msa1158600 | AT5G59610.1 | 42.697 | 89 | 40 | 1 | 27 | 115 | 56 | 133 | 1.08e-13 | 70.1 |
| Msa1158600 | AT5G59610.4 | 42.697 | 89 | 40 | 1 | 27 | 115 | 56 | 133 | 1.08e-13 | 70.1 |
| Msa1158600 | AT5G59610.3 | 42.697 | 89 | 40 | 1 | 27 | 115 | 56 | 133 | 1.19e-13 | 70.1 |
| Msa1158600 | AT5G59610.5 | 42.697 | 89 | 40 | 1 | 27 | 115 | 56 | 133 | 1.19e-13 | 70.1 |
| Msa1158600 | AT5G59610.2 | 42.697 | 89 | 40 | 1 | 27 | 115 | 56 | 133 | 1.33e-13 | 69.7 |
| Msa1158600 | AT5G48030.1 | 42.308 | 78 | 41 | 2 | 55 | 131 | 94 | 168 | 1.17e-11 | 65.5 |
| Msa1158600 | AT3G08970.1 | 48.387 | 62 | 32 | 0 | 55 | 116 | 27 | 88 | 1.18e-11 | 65.5 |
| Msa1158600 | AT3G08970.2 | 48.387 | 62 | 32 | 0 | 55 | 116 | 27 | 88 | 1.18e-11 | 65.5 |
| Msa1158600 | AT1G61770.1 | 44.444 | 72 | 40 | 0 | 45 | 116 | 24 | 95 | 1.96e-11 | 63.9 |
| Msa1158600 | AT1G28210.3 | 36.190 | 105 | 57 | 4 | 47 | 148 | 38 | 135 | 6.04e-11 | 63.2 |
| Msa1158600 | AT4G13830.1 | 50.000 | 66 | 30 | 1 | 57 | 119 | 68 | 133 | 6.32e-11 | 60.1 |
| Msa1158600 | AT1G28210.1 | 36.190 | 105 | 57 | 4 | 47 | 148 | 38 | 135 | 6.81e-11 | 63.2 |
| Msa1158600 | AT1G28210.2 | 36.190 | 105 | 57 | 4 | 47 | 148 | 38 | 135 | 7.08e-11 | 63.2 |
| Msa1158600 | AT4G13830.3 | 50.000 | 66 | 30 | 1 | 57 | 119 | 68 | 133 | 8.52e-11 | 60.5 |
Find 82 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTGGTTGCACTATTTA+TGG | 0.208759 | 7_4:+48015610 | Msa1158600:CDS |
| AGAGGCATGGTCTTTATATT+TGG | 0.242299 | 7_4:-48015730 | None:intergenic |
| TTATGTAATAGCATGGATTT+TGG | 0.245621 | 7_4:+48015517 | Msa1158600:CDS |
| CTGAACTCTTGTTGTTTCAT+TGG | 0.280900 | 7_4:-48015144 | None:intergenic |
| TTGGTCAGATTGCAGCTTAA+TGG | 0.284327 | 7_4:-48015711 | None:intergenic |
| ATTTATTTACATTTATTTAC+TGG | 0.290891 | 7_4:-48015833 | None:intergenic |
| AAATGCGTCGTGAAAGATAC+TGG | 0.307636 | 7_4:+48015276 | Msa1158600:CDS |
| AACAGAGCACCTTGGGGAAT+TGG | 0.318144 | 7_4:-48015671 | None:intergenic |
| AATAAATTCTAGCCATTTGT+TGG | 0.323425 | 7_4:+48015853 | Msa1158600:three_prime_UTR |
| TCTTACCTCATCTTCAAATT+CGG | 0.359902 | 7_4:-48015225 | None:intergenic |
| GCGAGGCGCGGCGGAGAGAT+AGG | 0.372902 | 7_4:-48011513 | None:intergenic |
| AAGAGTTAACAGAGCACCTT+GGG | 0.387757 | 7_4:-48015678 | None:intergenic |
| GATCTTGTCGTTTGCAAGTT+GGG | 0.391179 | 7_4:+48015568 | Msa1158600:CDS |
| GTCTGACAGCATTGTTTGAT+AGG | 0.403060 | 7_4:+48015468 | Msa1158600:CDS |
| CGCTAAATGTAAGGGAGAGC+CGG | 0.419394 | 7_4:-48015445 | None:intergenic |
| CTGTCAGACCGCTAAATGTA+AGG | 0.420848 | 7_4:-48015454 | None:intergenic |
| CGTTTGCAAGTTGGGTTTGT+GGG | 0.438261 | 7_4:+48015576 | Msa1158600:CDS |
| CGGCTCTCCCTTACATTTAG+CGG | 0.454557 | 7_4:+48015446 | Msa1158600:CDS |
| TTAGATGCTGGCTATAAAGT+TGG | 0.461162 | 7_4:+48015494 | Msa1158600:CDS |
| GAATTGGTGCATAGCTAGAA+AGG | 0.464524 | 7_4:-48015655 | None:intergenic |
| TATTCCAAACGTTAGGATCC+CGG | 0.471270 | 7_4:+48015426 | Msa1158600:CDS |
| CAACAAGAGTTCAGTATGAT+CGG | 0.473904 | 7_4:+48015153 | Msa1158600:CDS |
| TTATCGTCTCCTCGCTCGTA+AGG | 0.477250 | 7_4:+48011664 | Msa1158600:CDS |
| CTATTATTATTCCAAACGTT+AGG | 0.477258 | 7_4:+48015419 | Msa1158600:CDS |
| TGATCTTGTCGTTTGCAAGT+TGG | 0.479851 | 7_4:+48015567 | Msa1158600:CDS |
| AGAGCCGGGATCCTAACGTT+TGG | 0.482502 | 7_4:-48015430 | None:intergenic |
| ACAGATGAGAAGGAGGATGA+AGG | 0.485837 | 7_4:+48015338 | Msa1158600:CDS |
| TCTAAATCCTTGCTAACATC+AGG | 0.486199 | 7_4:-48014653 | None:intergenic |
| CACTATTTATGGTAGCCATG+TGG | 0.496148 | 7_4:+48015621 | Msa1158600:CDS |
| AAGATGAGGTAAGAAGATAT+AGG | 0.498568 | 7_4:+48015234 | Msa1158600:CDS |
| ATGCAATCGCATCTTCTTGT+GGG | 0.506381 | 7_4:+48011449 | Msa1158600:CDS |
| AATTCAGAAGTAAGAAATGC+TGG | 0.506769 | 7_4:-48015754 | None:intergenic |
| CTTTATCTATCACCAACAAA+TGG | 0.512031 | 7_4:-48015865 | None:intergenic |
| TAGTGCAACCACACTACTAC+TGG | 0.513219 | 7_4:-48015603 | None:intergenic |
| TTTGATAGGAAATTAGATGC+TGG | 0.515080 | 7_4:+48015482 | Msa1158600:CDS |
| ATGTCTACGGCGGCGAGGCG+CGG | 0.520659 | 7_4:-48011525 | None:intergenic |
| AACAAGAGTTCAGTATGATC+GGG | 0.528911 | 7_4:+48015154 | Msa1158600:CDS |
| AGCAGAAGCTGAAGAAGAAG+AGG | 0.532674 | 7_4:-48011567 | None:intergenic |
| ACTATTTATGGTAGCCATGT+GGG | 0.536513 | 7_4:+48015622 | Msa1158600:CDS |
| AAGTTGGTTATGTAATAGCA+TGG | 0.537098 | 7_4:+48015510 | Msa1158600:CDS |
| AGAATGAGCGGTGATGGAGA+TGG | 0.539711 | 7_4:-48011474 | None:intergenic |
| ATGAGGTAAGAAGATATAGG+TGG | 0.544512 | 7_4:+48015237 | Msa1158600:CDS |
| TCGTTTGCAAGTTGGGTTTG+TGG | 0.544871 | 7_4:+48015575 | Msa1158600:CDS |
| GCTAAATGTAAGGGAGAGCC+GGG | 0.545161 | 7_4:-48015444 | None:intergenic |
| GAATGAGCGGTGATGGAGAT+GGG | 0.545404 | 7_4:-48011473 | None:intergenic |
| TCTACGGCGGCGAGGCGCGG+CGG | 0.546370 | 7_4:-48011522 | None:intergenic |
| AGCGGTAGAATGAGCGGTGA+TGG | 0.550130 | 7_4:-48011480 | None:intergenic |
| TCTTCAGCTTCTGCTATCAA+CGG | 0.553235 | 7_4:+48011575 | Msa1158600:CDS |
| AGAACGCGCGACGCCGAGTA+CGG | 0.557681 | 7_4:-48011615 | None:intergenic |
| TAAGAGTTAACAGAGCACCT+TGG | 0.566651 | 7_4:-48015679 | None:intergenic |
| TGAGGTAAGAAGATATAGGT+GGG | 0.567585 | 7_4:+48015238 | Msa1158600:CDS |
| TTTATGGTAGCCATGTGGGT+TGG | 0.568127 | 7_4:+48015626 | Msa1158600:CDS |
| ACGGAGTTACAGTGAGGGTG+AGG | 0.569068 | 7_4:-48011393 | None:intergenic |
| ACTCGGCGTCGCGCGTTCTG+CGG | 0.569840 | 7_4:+48011619 | Msa1158600:CDS |
| CTGAGATGAGTAGATGTCTA+CGG | 0.570486 | 7_4:-48011538 | None:intergenic |
| AATGCAATCGCATCTTCTTG+TGG | 0.575352 | 7_4:+48011448 | Msa1158600:CDS |
| CAACAGTGAAACAGATGAGA+AGG | 0.577327 | 7_4:+48015328 | Msa1158600:CDS |
| CAACACCGAATTTGAAGATG+AGG | 0.577423 | 7_4:+48015220 | Msa1158600:CDS |
| GAAGTAAGAAATGCTGGCAG+AGG | 0.587812 | 7_4:-48015748 | None:intergenic |
| ACTGTTGTAGTAATCCTCGT+TGG | 0.598072 | 7_4:-48015312 | None:intergenic |
| AAGAAATGCTGGCAGAGGCA+TGG | 0.606179 | 7_4:-48015743 | None:intergenic |
| GTATCATCCTGATGTTAGCA+AGG | 0.612202 | 7_4:+48014646 | Msa1158600:intron |
| AATTGGTGCATAGCTAGAAA+GGG | 0.613598 | 7_4:-48015654 | None:intergenic |
| CAGTGAAACAGATGAGAAGG+AGG | 0.614143 | 7_4:+48015331 | Msa1158600:CDS |
| GGTTGCTCACTTCATAAGCA+TGG | 0.626473 | 7_4:-48014703 | None:intergenic |
| ATTAGAATACCTTACGAGCG+AGG | 0.628058 | 7_4:-48011673 | None:intergenic |
| TGTCAGACCGCTAAATGTAA+GGG | 0.629536 | 7_4:-48015453 | None:intergenic |
| GATATAGGTGGGCTTACATG+AGG | 0.631143 | 7_4:+48015249 | Msa1158600:CDS |
| ATCAGCAGCGGTAGAATGAG+CGG | 0.631740 | 7_4:-48011486 | None:intergenic |
| GCTTCTGCTATCAACGGCAA+AGG | 0.642256 | 7_4:+48011581 | Msa1158600:CDS |
| AAGGGATGAGCCAACCCACA+TGG | 0.645849 | 7_4:-48015636 | None:intergenic |
| AATGCGTCGTGAAAGATACT+GGG | 0.654807 | 7_4:+48015277 | Msa1158600:CDS |
| AGCTATGCACCAATTCCCCA+AGG | 0.655323 | 7_4:+48015662 | Msa1158600:CDS |
| GAGATAGGAAGAATCAGCAG+CGG | 0.676402 | 7_4:-48011498 | None:intergenic |
| TGATAACGGAGTTACAGTGA+GGG | 0.676428 | 7_4:-48011398 | None:intergenic |
| ATGATAACGGAGTTACAGTG+AGG | 0.687715 | 7_4:-48011399 | None:intergenic |
| AGTAGATGTCTACGGCGGCG+AGG | 0.697644 | 7_4:-48011530 | None:intergenic |
| TGGGAAAACCAGTAGTAGTG+TGG | 0.704395 | 7_4:+48015595 | Msa1158600:CDS |
| TGCTCACTTCATAAGCATGG+CGG | 0.714270 | 7_4:-48014700 | None:intergenic |
| GGAACATTACAATGCCAACG+AGG | 0.761003 | 7_4:+48015298 | Msa1158600:CDS |
| AGAGTTAACAGAGCACCTTG+GGG | 0.786394 | 7_4:-48015677 | None:intergenic |
| AGATGAGTAGATGTCTACGG+CGG | 0.792754 | 7_4:-48011535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTAATTTATGTAATT+TGG | + | chr7_4:48014168-48014187 | Msa1158600:intron | 10.0% |
| !! | ATTTATTTACATTTATTTAC+TGG | - | chr7_4:48015836-48015855 | None:intergenic | 10.0% |
| !!! | TTAGAATCTAATTTGTAATA+TGG | + | chr7_4:48011808-48011827 | Msa1158600:intron | 15.0% |
| !! | AAAATGTAAAAAATTAAAGG+TGG | - | chr7_4:48011998-48012017 | None:intergenic | 15.0% |
| !! | AGGAAAATGTAAAAAATTAA+AGG | - | chr7_4:48012001-48012020 | None:intergenic | 15.0% |
| !! | TTTGATTCAAAATAAAAAAC+CGG | + | chr7_4:48013537-48013556 | Msa1158600:intron | 15.0% |
| !!! | ACATAAATTAAATTCTAAAG+TGG | - | chr7_4:48014164-48014183 | None:intergenic | 15.0% |
| !! | AAATGATAATAACACAATAA+TGG | - | chr7_4:48014244-48014263 | None:intergenic | 15.0% |
| !! | TCTTGAAATATATATTATAG+GGG | - | chr7_4:48014526-48014545 | None:intergenic | 15.0% |
| !! | GTCTTGAAATATATATTATA+GGG | - | chr7_4:48014527-48014546 | None:intergenic | 15.0% |
| !!! | AGAATGATTTTTGTTTATGT+TGG | + | chr7_4:48012287-48012306 | Msa1158600:intron | 20.0% |
| !!! | GTTTAAACTTGTTACATTTA+TGG | + | chr7_4:48012420-48012439 | Msa1158600:intron | 20.0% |
| !! | AAACATGTCAAAAATTATGT+AGG | - | chr7_4:48012844-48012863 | None:intergenic | 20.0% |
| !! | GTAAAGTCAAATTCTTTAAA+AGG | + | chr7_4:48012904-48012923 | Msa1158600:intron | 20.0% |
| !! | TAAACTCTTTATTACATTGA+AGG | + | chr7_4:48013504-48013523 | Msa1158600:intron | 20.0% |
| !! | GTATAGGTTTAAATGAAAAT+CGG | - | chr7_4:48013651-48013670 | None:intergenic | 20.0% |
| !! | TAAACCTATACTATATCATT+TGG | + | chr7_4:48013660-48013679 | Msa1158600:intron | 20.0% |
| !! | CATCTAAATCTTAAAATCAA+TGG | - | chr7_4:48014085-48014104 | None:intergenic | 20.0% |
| !!! | CATTGATTTTAAGATTTAGA+TGG | + | chr7_4:48014083-48014102 | Msa1158600:intron | 20.0% |
| !! | TGAAAATTCAAAGAGAAAAA+GGG | - | chr7_4:48014477-48014496 | None:intergenic | 20.0% |
| !! | ATGAAAATTCAAAGAGAAAA+AGG | - | chr7_4:48014478-48014497 | None:intergenic | 20.0% |
| !! | CTTGAAATATATATTATAGG+GGG | - | chr7_4:48014525-48014544 | None:intergenic | 20.0% |
| !! | CGTCTTGAAATATATATTAT+AGG | - | chr7_4:48014528-48014547 | None:intergenic | 20.0% |
| !! | ATAATATATATTTCAAGACG+AGG | + | chr7_4:48014528-48014547 | Msa1158600:intron | 20.0% |
| !! | TAATATATATTTCAAGACGA+GGG | + | chr7_4:48014529-48014548 | Msa1158600:intron | 20.0% |
| !!! | GATTTAATTTCATCTTTCTA+GGG | + | chr7_4:48014783-48014802 | Msa1158600:intron | 20.0% |
| !!! | AAAAGTTTTAGATTCTTTTG+TGG | + | chr7_4:48014812-48014831 | Msa1158600:intron | 20.0% |
| !! | AATAAATTCTTGGTAGAAAA+AGG | - | chr7_4:48014976-48014995 | None:intergenic | 20.0% |
| !!! | TCTTGATAACAATAAATTCT+TGG | - | chr7_4:48014986-48015005 | None:intergenic | 20.0% |
| !! | TGATGTTTGATATTTTGTGA+GGG | - | chr7_4:48011361-48011380 | None:intergenic | 25.0% |
| !! | TTGATGTTTGATATTTTGTG+AGG | - | chr7_4:48011362-48011381 | None:intergenic | 25.0% |
| !! | CTTTTGCTTCAAAATGATAA+CGG | - | chr7_4:48011415-48011434 | None:intergenic | 25.0% |
| !!! | TAAGGTGTTATATTTTGCTT+TGG | + | chr7_4:48011756-48011775 | Msa1158600:intron | 25.0% |
| !!! | AAATGAATTTTAGTAGCTCT+AGG | + | chr7_4:48012197-48012216 | Msa1158600:intron | 25.0% |
| ! | AACAACAACAATAACTTTGT+CGG | - | chr7_4:48012259-48012278 | None:intergenic | 25.0% |
| !!! | AACCTAGTTTTATAACAAGA+TGG | - | chr7_4:48012476-48012495 | None:intergenic | 25.0% |
| ! | TGAACTCATTAGTACTATTA+CGG | + | chr7_4:48013131-48013150 | Msa1158600:intron | 25.0% |
| !! | ACAACATCAATAACTGTTTT+AGG | - | chr7_4:48013348-48013367 | None:intergenic | 25.0% |
| !! | AGAATGATTTTTGCTAATGT+TGG | + | chr7_4:48013374-48013393 | Msa1158600:intron | 25.0% |
| ! | TTTAGCTACTTGAATTGTTA+TGG | + | chr7_4:48013599-48013618 | Msa1158600:intron | 25.0% |
| ! | AATGCAAACAATGAACAAAA+TGG | + | chr7_4:48013707-48013726 | Msa1158600:intron | 25.0% |
| ! | ATTGCTAAATGAATAAGCTT+AGG | + | chr7_4:48014043-48014062 | Msa1158600:intron | 25.0% |
| !!! | TATGTAATTTGGCTTCTTTT+TGG | + | chr7_4:48014179-48014198 | Msa1158600:intron | 25.0% |
| ! | TGTCAATATCATCATATGAT+TGG | - | chr7_4:48014362-48014381 | None:intergenic | 25.0% |
| !!! | CAATATAACTAGTTTTACAC+TGG | - | chr7_4:48014443-48014462 | None:intergenic | 25.0% |
| ! | AAGCAAGAAAAGTTGAATAA+CGG | - | chr7_4:48014727-48014746 | None:intergenic | 25.0% |
| !! | ATTCAACTTTTCTTGCTTTA+TGG | + | chr7_4:48014729-48014748 | Msa1158600:intron | 25.0% |
| !! | GGATTTAATTTCATCTTTCT+AGG | + | chr7_4:48014782-48014801 | Msa1158600:intron | 25.0% |
| ! | AAAACTGCAAAATAACAGTA+AGG | - | chr7_4:48014841-48014860 | None:intergenic | 25.0% |
| ! | ATTATTCAAATGTCAACGAT+AGG | - | chr7_4:48014884-48014903 | None:intergenic | 25.0% |
| !! | TTTTAATGCAGTAGAAATTC+TGG | - | chr7_4:48015036-48015055 | None:intergenic | 25.0% |
| ! | CAAAAATACATATGCTCTAA+AGG | - | chr7_4:48015077-48015096 | None:intergenic | 25.0% |
| !!! | GTATTTTTATATCCTCAAAC+AGG | + | chr7_4:48015115-48015134 | Msa1158600:intron | 25.0% |
| ! | CTATTATTATTCCAAACGTT+AGG | + | chr7_4:48015419-48015438 | Msa1158600:CDS | 25.0% |
| !! | TTATGTAATAGCATGGATTT+TGG | + | chr7_4:48015517-48015536 | Msa1158600:CDS | 25.0% |
| !! | TATGTAATAGCATGGATTTT+GGG | + | chr7_4:48015518-48015537 | Msa1158600:CDS | 25.0% |
| !! | GTCAATATTCTTTTCTATTG+TGG | + | chr7_4:48015785-48015804 | Msa1158600:three_prime_UTR | 25.0% |
| ! | AATAAATTCTAGCCATTTGT+TGG | + | chr7_4:48015853-48015872 | Msa1158600:three_prime_UTR | 25.0% |
| !!! | AGTTTTGTAGCTTTGAACTA+AGG | + | chr7_4:48011738-48011757 | Msa1158600:intron | 30.0% |
| ACAACAACAATAACTTTGTC+GGG | - | chr7_4:48012258-48012277 | None:intergenic | 30.0% | |
| ! | GTTATTGTTGTTGTTGTTGT+TGG | + | chr7_4:48012264-48012283 | Msa1158600:intron | 30.0% |
| ! | AGCCATCTTGTTATAAAACT+AGG | + | chr7_4:48012471-48012490 | Msa1158600:intron | 30.0% |
| TACTACTACTATGTTGCATT+CGG | - | chr7_4:48012654-48012673 | None:intergenic | 30.0% | |
| AGTAGTAGTATCCATACAAA+TGG | + | chr7_4:48012676-48012695 | Msa1158600:intron | 30.0% | |
| AATGCAAATCACGAACAAAA+TGG | + | chr7_4:48012721-48012740 | Msa1158600:intron | 30.0% | |
| GGTTAGCAAATTTATGATGT+GGG | - | chr7_4:48012792-48012811 | None:intergenic | 30.0% | |
| TTTGCATACTTGAATTGCAA+AGG | - | chr7_4:48012821-48012840 | None:intergenic | 30.0% | |
| TTAAAAGGTCGTGTTAGTAA+TGG | + | chr7_4:48012919-48012938 | Msa1158600:intron | 30.0% | |
| AATGGTGTAACAAATCAGTT+TGG | + | chr7_4:48012937-48012956 | Msa1158600:intron | 30.0% | |
| !! | AATCAGTTTGGTTCGATTTT+TGG | + | chr7_4:48012949-48012968 | Msa1158600:intron | 30.0% |
| TTAGTTGTTACTAAGATGGT+GGG | + | chr7_4:48013160-48013179 | Msa1158600:intron | 30.0% | |
| AACTAGATCACTTAAGTATG+TGG | + | chr7_4:48013198-48013217 | Msa1158600:intron | 30.0% | |
| ACAGTTATTGATGTTGTTGT+TGG | + | chr7_4:48013351-48013370 | Msa1158600:intron | 30.0% | |
| CGAAAATAGATTACAAAGTC+CGG | - | chr7_4:48013559-48013578 | None:intergenic | 30.0% | |
| TCGAATTGCACAACTTAAAA+TGG | + | chr7_4:48013576-48013595 | Msa1158600:intron | 30.0% | |
| GTTGCGTCATTATTCATTAA+TGG | + | chr7_4:48013729-48013748 | Msa1158600:intron | 30.0% | |
| ATTGATGCTATGCTATTGAT+GGG | + | chr7_4:48013920-48013939 | Msa1158600:intron | 30.0% | |
| CTTATTCATTTAGCAATGAG+TGG | - | chr7_4:48014040-48014059 | None:intergenic | 30.0% | |
| ATCCAATAAGATCCATCATT+TGG | - | chr7_4:48014419-48014438 | None:intergenic | 30.0% | |
| CAAATAATTGTCTCGTAACA+TGG | + | chr7_4:48014761-48014780 | Msa1158600:intron | 30.0% | |
| !! | AATTCTGGAATTTCATGAGA+TGG | - | chr7_4:48015021-48015040 | None:intergenic | 30.0% |
| !! | TAACTCCATTTTTCTTGGTA+TGG | - | chr7_4:48015200-48015219 | None:intergenic | 30.0% |
| !! | TGTTGTAACTCCATTTTTCT+TGG | - | chr7_4:48015205-48015224 | None:intergenic | 30.0% |
| TCTTACCTCATCTTCAAATT+CGG | - | chr7_4:48015228-48015247 | None:intergenic | 30.0% | |
| AAGATGAGGTAAGAAGATAT+AGG | + | chr7_4:48015234-48015253 | Msa1158600:CDS | 30.0% | |
| TTTGATAGGAAATTAGATGC+TGG | + | chr7_4:48015482-48015501 | Msa1158600:CDS | 30.0% | |
| ! | AAGTTGGTTATGTAATAGCA+TGG | + | chr7_4:48015510-48015529 | Msa1158600:CDS | 30.0% |
| AATTCAGAAGTAAGAAATGC+TGG | - | chr7_4:48015757-48015776 | None:intergenic | 30.0% | |
| CTTTATCTATCACCAACAAA+TGG | - | chr7_4:48015868-48015887 | None:intergenic | 30.0% | |
| TGAGAAGTTCTCGATAATAG+AGG | - | chr7_4:48012021-48012040 | None:intergenic | 35.0% | |
| !! | TATGTTTGTTGTTACCGACA+TGG | + | chr7_4:48012071-48012090 | Msa1158600:intron | 35.0% |
| AGTCAGAGATTCAATCAGAT+TGG | + | chr7_4:48012134-48012153 | Msa1158600:intron | 35.0% | |
| AGAAGAAACCCAAAAAACCT+AGG | - | chr7_4:48012385-48012404 | None:intergenic | 35.0% | |
| ! | GTTACATTTATGGCTTTGCA+TGG | + | chr7_4:48012430-48012449 | Msa1158600:intron | 35.0% |
| GCAGCGGAATGATAAATTAT+AGG | - | chr7_4:48012594-48012613 | None:intergenic | 35.0% | |
| !! | GTGGTGTCATAAGAAGAAAA+TGG | - | chr7_4:48012632-48012651 | None:intergenic | 35.0% |
| CGGTTAGCAAATTTATGATG+TGG | - | chr7_4:48012793-48012812 | None:intergenic | 35.0% | |
| ! | AAGAACGCGTTTGTTAGATT+TGG | + | chr7_4:48013013-48013032 | Msa1158600:intron | 35.0% |
| GGTGTTAGTTGTTACTAAGA+TGG | + | chr7_4:48013156-48013175 | Msa1158600:intron | 35.0% | |
| GTTAGTTGTTACTAAGATGG+TGG | + | chr7_4:48013159-48013178 | Msa1158600:intron | 35.0% | |
| AGATCACTTAAGTATGTGGT+CGG | + | chr7_4:48013202-48013221 | Msa1158600:intron | 35.0% | |
| AAGTAGCATTTCATCCTATG+AGG | + | chr7_4:48013401-48013420 | Msa1158600:intron | 35.0% | |
| CCAGTTATTTAGGCAAAAAG+AGG | - | chr7_4:48013439-48013458 | None:intergenic | 35.0% | |
| ! | CCTCTTTTTGCCTAAATAAC+TGG | + | chr7_4:48013436-48013455 | Msa1158600:intron | 35.0% |
| ! | TCAGAAGCACAAGAAAATCT+AGG | - | chr7_4:48013468-48013487 | None:intergenic | 35.0% |
| ! | TGCTTCTGACTTCTGATTTT+AGG | + | chr7_4:48013479-48013498 | Msa1158600:intron | 35.0% |
| TGTTATGGCAAAACTGATGT+TGG | + | chr7_4:48013614-48013633 | Msa1158600:intron | 35.0% | |
| GTTATGGCAAAACTGATGTT+GGG | + | chr7_4:48013615-48013634 | Msa1158600:intron | 35.0% | |
| TTATGGCAAAACTGATGTTG+GGG | + | chr7_4:48013616-48013635 | Msa1158600:intron | 35.0% | |
| GCAGCCAAATGATATAGTAT+AGG | - | chr7_4:48013667-48013686 | None:intergenic | 35.0% | |
| CAAATCAGACATTGTTTGGT+TGG | - | chr7_4:48013777-48013796 | None:intergenic | 35.0% | |
| TCAGCAAATCAGACATTGTT+TGG | - | chr7_4:48013781-48013800 | None:intergenic | 35.0% | |
| !! | AACAATGTCTGATTTGCTGA+TGG | + | chr7_4:48013781-48013800 | Msa1158600:intron | 35.0% |
| AGTCACATAGAATGTAGCTT+AGG | - | chr7_4:48013838-48013857 | None:intergenic | 35.0% | |
| CATTGATGCTATGCTATTGA+TGG | + | chr7_4:48013919-48013938 | Msa1158600:intron | 35.0% | |
| ATTGATGGGATTCTTGTTGA+TGG | + | chr7_4:48013934-48013953 | Msa1158600:intron | 35.0% | |
| !! | TTCTAAAGTGGATCAGTCTA+GGG | - | chr7_4:48014152-48014171 | None:intergenic | 35.0% |
| !! | ATTCTAAAGTGGATCAGTCT+AGG | - | chr7_4:48014153-48014172 | None:intergenic | 35.0% |
| GTGTATGTTGCAAGAATGTT+GGG | - | chr7_4:48014280-48014299 | None:intergenic | 35.0% | |
| TGTGTATGTTGCAAGAATGT+TGG | - | chr7_4:48014281-48014300 | None:intergenic | 35.0% | |
| TGGCGCTTATCTTTAAATTG+TGG | - | chr7_4:48014399-48014418 | None:intergenic | 35.0% | |
| TAAAGATAAGCGCCAAATGA+TGG | + | chr7_4:48014404-48014423 | Msa1158600:intron | 35.0% | |
| !! | AGTCGTGAGCTTTTTGTTTA+GGG | - | chr7_4:48014606-48014625 | None:intergenic | 35.0% |
| !! | TAGTCGTGAGCTTTTTGTTT+AGG | - | chr7_4:48014607-48014626 | None:intergenic | 35.0% |
| TCTAAATCCTTGCTAACATC+AGG | - | chr7_4:48014656-48014675 | None:intergenic | 35.0% | |
| !!! | CTGTTATTTTGCAGTTTTGC+TGG | + | chr7_4:48014843-48014862 | Msa1158600:intron | 35.0% |
| !!! | TTTTGTTTTGCCATCTGCAT+CGG | + | chr7_4:48014910-48014929 | Msa1158600:intron | 35.0% |
| ! | AATTTGAAATCCGATGCAGA+TGG | - | chr7_4:48014923-48014942 | None:intergenic | 35.0% |
| !! | CTGAACTCTTGTTGTTTCAT+TGG | - | chr7_4:48015147-48015166 | None:intergenic | 35.0% |
| CAACAAGAGTTCAGTATGAT+CGG | + | chr7_4:48015153-48015172 | Msa1158600:CDS | 35.0% | |
| AACAAGAGTTCAGTATGATC+GGG | + | chr7_4:48015154-48015173 | Msa1158600:CDS | 35.0% | |
| ACAAGCCATACCAAGAAAAA+TGG | + | chr7_4:48015192-48015211 | Msa1158600:CDS | 35.0% | |
| ATGAGGTAAGAAGATATAGG+TGG | + | chr7_4:48015237-48015256 | Msa1158600:CDS | 35.0% | |
| TGAGGTAAGAAGATATAGGT+GGG | + | chr7_4:48015238-48015257 | Msa1158600:CDS | 35.0% | |
| ! | TTAGATGCTGGCTATAAAGT+TGG | + | chr7_4:48015494-48015513 | Msa1158600:CDS | 35.0% |
| !! | TAATAGCATGGATTTTGGGT+GGG | + | chr7_4:48015522-48015541 | Msa1158600:CDS | 35.0% |
| TAGTGTGGTTGCACTATTTA+TGG | + | chr7_4:48015610-48015629 | Msa1158600:CDS | 35.0% | |
| ACTATTTATGGTAGCCATGT+GGG | + | chr7_4:48015622-48015641 | Msa1158600:CDS | 35.0% | |
| AATTGGTGCATAGCTAGAAA+GGG | - | chr7_4:48015657-48015676 | None:intergenic | 35.0% | |
| ! | AGAGGCATGGTCTTTATATT+TGG | - | chr7_4:48015733-48015752 | None:intergenic | 35.0% |
| !! | TGATAACGGAGTTACAGTGA+GGG | - | chr7_4:48011401-48011420 | None:intergenic | 40.0% |
| !! | ATGATAACGGAGTTACAGTG+AGG | - | chr7_4:48011402-48011421 | None:intergenic | 40.0% |
| AATGCAATCGCATCTTCTTG+TGG | + | chr7_4:48011448-48011467 | Msa1158600:CDS | 40.0% | |
| ATGCAATCGCATCTTCTTGT+GGG | + | chr7_4:48011449-48011468 | Msa1158600:CDS | 40.0% | |
| CTGAGATGAGTAGATGTCTA+CGG | - | chr7_4:48011541-48011560 | None:intergenic | 40.0% | |
| TCTTCAGCTTCTGCTATCAA+CGG | + | chr7_4:48011575-48011594 | Msa1158600:CDS | 40.0% | |
| ATTAGAATACCTTACGAGCG+AGG | - | chr7_4:48011676-48011695 | None:intergenic | 40.0% | |
| CGCATCAAAAGCGAAAAATC+AGG | - | chr7_4:48011705-48011724 | None:intergenic | 40.0% | |
| GCATCAACACTTCTGATTGA+AGG | + | chr7_4:48011864-48011883 | Msa1158600:intron | 40.0% | |
| ACACAGACACAGACACATAT+AGG | - | chr7_4:48011955-48011974 | None:intergenic | 40.0% | |
| ATATGTGTCTGTGTCTGTGT+TGG | + | chr7_4:48011955-48011974 | Msa1158600:intron | 40.0% | |
| !! | TTTGTTGTTACCGACATGGT+AGG | + | chr7_4:48012075-48012094 | Msa1158600:intron | 40.0% |
| ! | CTCTAGGAATTAGTCTCTAG+TGG | + | chr7_4:48012213-48012232 | Msa1158600:intron | 40.0% |
| CATCCAGTTATTTAGGGGAA+GGG | - | chr7_4:48012359-48012378 | None:intergenic | 40.0% | |
| CTTCCCCTAAATAACTGGAT+GGG | + | chr7_4:48012358-48012377 | Msa1158600:intron | 40.0% | |
| AGGTCCCATCCAGTTATTTA+GGG | - | chr7_4:48012365-48012384 | None:intergenic | 40.0% | |
| TAGGTCCCATCCAGTTATTT+AGG | - | chr7_4:48012366-48012385 | None:intergenic | 40.0% | |
| TAAATAACTGGATGGGACCT+AGG | + | chr7_4:48012365-48012384 | Msa1158600:intron | 40.0% | |
| TCAAGCTGCACAACATGAAA+TGG | + | chr7_4:48012509-48012528 | Msa1158600:intron | 40.0% | |
| TACTACTATGTTGCATTCGG+TGG | - | chr7_4:48012651-48012670 | None:intergenic | 40.0% | |
| GTAGTATCCATACAAATGGC+AGG | + | chr7_4:48012680-48012699 | Msa1158600:intron | 40.0% | |
| ! | AACAGATCCTGCCATTTGTA+TGG | - | chr7_4:48012690-48012709 | None:intergenic | 40.0% |
| TACAAATGGCAGGATCTGTT+AGG | + | chr7_4:48012690-48012709 | Msa1158600:intron | 40.0% | |
| GGTTTGTATGCTTATGTGGA+AGG | - | chr7_4:48012771-48012790 | None:intergenic | 40.0% | |
| TGTGGGTTTGTATGCTTATG+TGG | - | chr7_4:48012775-48012794 | None:intergenic | 40.0% | |
| CTTGAATTGCAAAGGACACA+CGG | - | chr7_4:48012813-48012832 | None:intergenic | 40.0% | |
| CTCATTAGTACTATTACGGC+TGG | + | chr7_4:48013135-48013154 | Msa1158600:intron | 40.0% | |
| ACATGAATCTCAGTACCTCT+AGG | + | chr7_4:48013284-48013303 | Msa1158600:intron | 40.0% | |
| TAGGTCGCATCCAGTTATTT+AGG | - | chr7_4:48013449-48013468 | None:intergenic | 40.0% | |
| AAGCAAGAAACTTCACCATC+AGG | - | chr7_4:48013864-48013883 | None:intergenic | 40.0% | |
| AACAACAACGAGTAGCTTCT+TGG | - | chr7_4:48013980-48013999 | None:intergenic | 40.0% | |
| ! | AAACTGGTCTGCAAATGAAG+AGG | - | chr7_4:48014121-48014140 | None:intergenic | 40.0% |
| TCTTCATTTGCAGACCAGTT+TGG | + | chr7_4:48014120-48014139 | Msa1158600:intron | 40.0% | |
| !! | CGCCAAATGATGGATCTTAT+TGG | + | chr7_4:48014414-48014433 | Msa1158600:intron | 40.0% |
| !! | GACGAGGGTATCTATGAATT+TGG | + | chr7_4:48014544-48014563 | Msa1158600:intron | 40.0% |
| GTATCATCCTGATGTTAGCA+AGG | + | chr7_4:48014646-48014665 | Msa1158600:intron | 40.0% | |
| CATTGGATAGTACCTGTTTG+AGG | - | chr7_4:48015130-48015149 | None:intergenic | 40.0% | |
| CAACACCGAATTTGAAGATG+AGG | + | chr7_4:48015220-48015239 | Msa1158600:CDS | 40.0% | |
| AAATGCGTCGTGAAAGATAC+TGG | + | chr7_4:48015276-48015295 | Msa1158600:CDS | 40.0% | |
| AATGCGTCGTGAAAGATACT+GGG | + | chr7_4:48015277-48015296 | Msa1158600:CDS | 40.0% | |
| ACTGTTGTAGTAATCCTCGT+TGG | - | chr7_4:48015315-48015334 | None:intergenic | 40.0% | |
| CAACAGTGAAACAGATGAGA+AGG | + | chr7_4:48015328-48015347 | Msa1158600:CDS | 40.0% | |
| TATTCCAAACGTTAGGATCC+CGG | + | chr7_4:48015426-48015445 | Msa1158600:CDS | 40.0% | |
| TGTCAGACCGCTAAATGTAA+GGG | - | chr7_4:48015456-48015475 | None:intergenic | 40.0% | |
| GTCTGACAGCATTGTTTGAT+AGG | + | chr7_4:48015468-48015487 | Msa1158600:CDS | 40.0% | |
| ! | GTAATAGCATGGATTTTGGG+TGG | + | chr7_4:48015521-48015540 | Msa1158600:CDS | 40.0% |
| ! | TGATCTTGTCGTTTGCAAGT+TGG | + | chr7_4:48015567-48015586 | Msa1158600:CDS | 40.0% |
| ! | GATCTTGTCGTTTGCAAGTT+GGG | + | chr7_4:48015568-48015587 | Msa1158600:CDS | 40.0% |
| CACTATTTATGGTAGCCATG+TGG | + | chr7_4:48015621-48015640 | Msa1158600:CDS | 40.0% | |
| GAATTGGTGCATAGCTAGAA+AGG | - | chr7_4:48015658-48015677 | None:intergenic | 40.0% | |
| ! | AAGAGTTAACAGAGCACCTT+GGG | - | chr7_4:48015681-48015700 | None:intergenic | 40.0% |
| ! | TAAGAGTTAACAGAGCACCT+TGG | - | chr7_4:48015682-48015701 | None:intergenic | 40.0% |
| TTGGTCAGATTGCAGCTTAA+TGG | - | chr7_4:48015714-48015733 | None:intergenic | 40.0% | |
| GAGATAGGAAGAATCAGCAG+CGG | - | chr7_4:48011501-48011520 | None:intergenic | 45.0% | |
| AGATGAGTAGATGTCTACGG+CGG | - | chr7_4:48011538-48011557 | None:intergenic | 45.0% | |
| AGCAGAAGCTGAAGAAGAAG+AGG | - | chr7_4:48011570-48011589 | None:intergenic | 45.0% | |
| ! | GAATTAGTCTCTAGTGGCTG+AGG | + | chr7_4:48012219-48012238 | Msa1158600:intron | 45.0% |
| CCATCCAGTTATTTAGGGGA+AGG | - | chr7_4:48012360-48012379 | None:intergenic | 45.0% | |
| CCTTCCCCTAAATAACTGGA+TGG | + | chr7_4:48012357-48012376 | Msa1158600:intron | 45.0% | |
| GGTCCCATCCAGTTATTTAG+GGG | - | chr7_4:48012364-48012383 | None:intergenic | 45.0% | |
| !!! | TGGATGGGACCTAGGTTTTT+TGG | + | chr7_4:48012373-48012392 | Msa1158600:intron | 45.0% |
| !!! | GGATGGGACCTAGGTTTTTT+GGG | + | chr7_4:48012374-48012393 | Msa1158600:intron | 45.0% |
| GATGATGAGCTAAGTAGCAG+CGG | - | chr7_4:48012610-48012629 | None:intergenic | 45.0% | |
| GTATGCTTATGTGGAAGGAG+TGG | - | chr7_4:48012766-48012785 | None:intergenic | 45.0% | |
| !! | GTTACTAAGATGGTGGGACA+CGG | + | chr7_4:48013166-48013185 | Msa1158600:intron | 45.0% |
| ! | GGTACTGAGATTCATGTACG+AGG | - | chr7_4:48013281-48013300 | None:intergenic | 45.0% |
| ! | ACCTCTAGGAATCAGTGTCT+AGG | + | chr7_4:48013298-48013317 | Msa1158600:intron | 45.0% |
| !! | ACCTAGACACTGATTCCTAG+AGG | - | chr7_4:48013302-48013321 | None:intergenic | 45.0% |
| GGAACAACAACGTTCCTCAT+AGG | - | chr7_4:48013418-48013437 | None:intergenic | 45.0% | |
| GCAAAACTGATGTTGGGGTT+TGG | + | chr7_4:48013621-48013640 | Msa1158600:intron | 45.0% | |
| ! | ACATTGTTTGGTTGGCCAGT+GGG | - | chr7_4:48013769-48013788 | None:intergenic | 45.0% |
| TTCTATGTGACTCTGCCTGA+TGG | + | chr7_4:48013846-48013865 | Msa1158600:intron | 45.0% | |
| ACGAGTAGCTTCTTGGCATT+TGG | - | chr7_4:48013973-48013992 | None:intergenic | 45.0% | |
| ! | GCTAGTTCTCTCAATGGCAA+AGG | - | chr7_4:48014018-48014037 | None:intergenic | 45.0% |
| ! | TGAGTGGCTAGTTCTCTCAA+TGG | - | chr7_4:48014024-48014043 | None:intergenic | 45.0% |
| TGCTCACTTCATAAGCATGG+CGG | - | chr7_4:48014703-48014722 | None:intergenic | 45.0% | |
| GGTTGCTCACTTCATAAGCA+TGG | - | chr7_4:48014706-48014725 | None:intergenic | 45.0% | |
| ! | GATATAGGTGGGCTTACATG+AGG | + | chr7_4:48015249-48015268 | Msa1158600:CDS | 45.0% |
| GGAACATTACAATGCCAACG+AGG | + | chr7_4:48015298-48015317 | Msa1158600:CDS | 45.0% | |
| CAGTGAAACAGATGAGAAGG+AGG | + | chr7_4:48015331-48015350 | Msa1158600:CDS | 45.0% | |
| ACAGATGAGAAGGAGGATGA+AGG | + | chr7_4:48015338-48015357 | Msa1158600:CDS | 45.0% | |
| CTGTCAGACCGCTAAATGTA+AGG | - | chr7_4:48015457-48015476 | None:intergenic | 45.0% | |
| ! | TCGTTTGCAAGTTGGGTTTG+TGG | + | chr7_4:48015575-48015594 | Msa1158600:CDS | 45.0% |
| ! | CGTTTGCAAGTTGGGTTTGT+GGG | + | chr7_4:48015576-48015595 | Msa1158600:CDS | 45.0% |
| TGGGAAAACCAGTAGTAGTG+TGG | + | chr7_4:48015595-48015614 | Msa1158600:CDS | 45.0% | |
| TAGTGCAACCACACTACTAC+TGG | - | chr7_4:48015606-48015625 | None:intergenic | 45.0% | |
| TTTATGGTAGCCATGTGGGT+TGG | + | chr7_4:48015626-48015645 | Msa1158600:CDS | 45.0% | |
| ! | AGAGTTAACAGAGCACCTTG+GGG | - | chr7_4:48015680-48015699 | None:intergenic | 45.0% |
| GAAGTAAGAAATGCTGGCAG+AGG | - | chr7_4:48015751-48015770 | None:intergenic | 45.0% | |
| !!! | AATTGAAATTTTTAATATTT+AGG | + | chr7_4:48013043-48013062 | Msa1158600:intron | 5.0% |
| !! | GAATGAGCGGTGATGGAGAT+GGG | - | chr7_4:48011476-48011495 | None:intergenic | 50.0% |
| !! | AGAATGAGCGGTGATGGAGA+TGG | - | chr7_4:48011477-48011496 | None:intergenic | 50.0% |
| ATCAGCAGCGGTAGAATGAG+CGG | - | chr7_4:48011489-48011508 | None:intergenic | 50.0% | |
| GCTTCTGCTATCAACGGCAA+AGG | + | chr7_4:48011581-48011600 | Msa1158600:CDS | 50.0% | |
| TTATCGTCTCCTCGCTCGTA+AGG | + | chr7_4:48011664-48011683 | Msa1158600:CDS | 50.0% | |
| GTTACCGACATGGTAGGACA+CGG | + | chr7_4:48012081-48012100 | Msa1158600:intron | 50.0% | |
| !! | GGACACGGTTGGTAGATAAC+TGG | + | chr7_4:48012096-48012115 | Msa1158600:intron | 50.0% |
| CCAGTTATTTAGGGGAAGGG+AGG | - | chr7_4:48012356-48012375 | None:intergenic | 50.0% | |
| CCTCCCTTCCCCTAAATAAC+TGG | + | chr7_4:48012353-48012372 | Msa1158600:intron | 50.0% | |
| ! | GAAGGAGTGGTTTGCATTGG+TGG | - | chr7_4:48012753-48012772 | None:intergenic | 50.0% |
| ! | GTGGAAGGAGTGGTTTGCAT+TGG | - | chr7_4:48012756-48012775 | None:intergenic | 50.0% |
| AGGAATCAGTGTCTAGGTGC+TGG | + | chr7_4:48013304-48013323 | Msa1158600:intron | 50.0% | |
| ! | GTTTTCACAGTGTTGCCCAC+TGG | + | chr7_4:48013751-48013770 | Msa1158600:intron | 50.0% |
| ! | GACATTGTTTGGTTGGCCAG+TGG | - | chr7_4:48013770-48013789 | None:intergenic | 50.0% |
| ! | GTCTAGGGCTTCAACCAAAC+TGG | - | chr7_4:48014137-48014156 | None:intergenic | 50.0% |
| GCTAAATGTAAGGGAGAGCC+GGG | - | chr7_4:48015447-48015466 | None:intergenic | 50.0% | |
| CGCTAAATGTAAGGGAGAGC+CGG | - | chr7_4:48015448-48015467 | None:intergenic | 50.0% | |
| CGGCTCTCCCTTACATTTAG+CGG | + | chr7_4:48015446-48015465 | Msa1158600:CDS | 50.0% | |
| !! | TAGCATGGATTTTGGGTGGG+AGG | + | chr7_4:48015525-48015544 | Msa1158600:CDS | 50.0% |
| !! | AGCATGGATTTTGGGTGGGA+GGG | + | chr7_4:48015526-48015545 | Msa1158600:CDS | 50.0% |
| AGCTATGCACCAATTCCCCA+AGG | + | chr7_4:48015662-48015681 | Msa1158600:CDS | 50.0% | |
| ! | AACAGAGCACCTTGGGGAAT+TGG | - | chr7_4:48015674-48015693 | None:intergenic | 50.0% |
| AAGAAATGCTGGCAGAGGCA+TGG | - | chr7_4:48015746-48015765 | None:intergenic | 50.0% | |
| ACGGAGTTACAGTGAGGGTG+AGG | - | chr7_4:48011396-48011415 | None:intergenic | 55.0% | |
| AGCGGTAGAATGAGCGGTGA+TGG | - | chr7_4:48011483-48011502 | None:intergenic | 55.0% | |
| GGCGACCACTATACCGTACT+CGG | + | chr7_4:48011602-48011621 | Msa1158600:CDS | 55.0% | |
| CCAACCGTGTCCTACCATGT+CGG | - | chr7_4:48012088-48012107 | None:intergenic | 55.0% | |
| !! | CTAAGATGGTGGGACACGGT+TGG | + | chr7_4:48013170-48013189 | Msa1158600:intron | 55.0% |
| AGAGCCGGGATCCTAACGTT+TGG | - | chr7_4:48015433-48015452 | None:intergenic | 55.0% | |
| !! | GCATGGATTTTGGGTGGGAG+GGG | + | chr7_4:48015527-48015546 | Msa1158600:CDS | 55.0% |
| AAGGGATGAGCCAACCCACA+TGG | - | chr7_4:48015639-48015658 | None:intergenic | 55.0% | |
| AGTAGATGTCTACGGCGGCG+AGG | - | chr7_4:48011533-48011552 | None:intergenic | 60.0% | |
| CGACGCCGAGTACGGTATAG+TGG | - | chr7_4:48011610-48011629 | None:intergenic | 60.0% | |
| CCGACATGGTAGGACACGGT+TGG | + | chr7_4:48012085-48012104 | Msa1158600:intron | 60.0% | |
| !! | TGGATTTTGGGTGGGAGGGG+TGG | + | chr7_4:48015530-48015549 | Msa1158600:CDS | 60.0% |
| AGAACGCGCGACGCCGAGTA+CGG | - | chr7_4:48011618-48011637 | None:intergenic | 65.0% | |
| ATGTCTACGGCGGCGAGGCG+CGG | - | chr7_4:48011528-48011547 | None:intergenic | 70.0% | |
| ACTCGGCGTCGCGCGTTCTG+CGG | + | chr7_4:48011619-48011638 | Msa1158600:CDS | 70.0% | |
| GCGAGGCGCGGCGGAGAGAT+AGG | - | chr7_4:48011516-48011535 | None:intergenic | 75.0% | |
| ! | TCTACGGCGGCGAGGCGCGG+CGG | - | chr7_4:48011525-48011544 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 48011350 | 48015892 | 48011350 | ID=Msa1158600;Name=Msa1158600 |
| chr7_4 | mRNA | 48011350 | 48015892 | 48011350 | ID=Msa1158600-mRNA-1;Parent=Msa1158600;Name=Msa1158600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=93|1|1|1|1|1|3|153|304 |
| chr7_4 | exon | 48011350 | 48011685 | 48011350 | ID=Msa1158600-mRNA-1:exon:12877;Parent=Msa1158600-mRNA-1 |
| chr7_4 | exon | 48014647 | 48014715 | 48014647 | ID=Msa1158600-mRNA-1:exon:12878;Parent=Msa1158600-mRNA-1 |
| chr7_4 | exon | 48015137 | 48015892 | 48015137 | ID=Msa1158600-mRNA-1:exon:12879;Parent=Msa1158600-mRNA-1 |
| chr7_4 | five_prime_UTR | 48011350 | 48011442 | 48011350 | ID=Msa1158600-mRNA-1:five_prime_utr;Parent=Msa1158600-mRNA-1 |
| chr7_4 | CDS | 48011443 | 48011685 | 48011443 | ID=Msa1158600-mRNA-1:cds;Parent=Msa1158600-mRNA-1 |
| chr7_4 | CDS | 48014647 | 48014715 | 48014647 | ID=Msa1158600-mRNA-1:cds;Parent=Msa1158600-mRNA-1 |
| chr7_4 | CDS | 48015137 | 48015739 | 48015137 | ID=Msa1158600-mRNA-1:cds;Parent=Msa1158600-mRNA-1 |
| chr7_4 | three_prime_UTR | 48015740 | 48015892 | 48015740 | ID=Msa1158600-mRNA-1:three_prime_utr;Parent=Msa1158600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
