AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326780 MtrunA17_Chr8g0372871 83.746 283 19 1 1 283 1 256 1.05e-152 426
Msa1326780 MtrunA17_Chr8g0372881 73.835 279 71 1 5 283 10 286 7.23e-151 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326780 AT5G66450.2 53.070 228 99 4 62 283 1 226 1.33e-71 220
Msa1326780 AT5G66450.4 52.609 230 102 3 59 283 58 285 3.66e-71 221
Msa1326780 AT5G66450.1 52.609 230 102 3 59 283 58 285 3.66e-71 221
Msa1326780 AT3G50920.2 52.511 219 102 2 67 283 9 227 2.43e-66 207
Msa1326780 AT3G50920.1 52.511 219 102 2 67 283 60 278 7.33e-66 207
Msa1326780 AT5G66450.5 53.476 187 80 3 59 240 58 242 4.26e-55 179
Msa1326780 AT5G66450.3 54.348 184 77 3 59 237 58 239 2.20e-54 179

Find 76 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAGAATCGTTGTTATTT+TGG 0.139850 8_4:+41661053 Msa1326780:CDS
CTTCACAAATTGTAAGTTAA+TGG 0.195993 8_4:-41661870 None:intergenic
CTATCTTGTGGTATTGGTTA+TGG 0.214942 8_4:+41660992 Msa1326780:CDS
CTCACTGCATGTGTATTTAT+AGG 0.215003 8_4:+41661744 Msa1326780:three_prime_UTR
CAATTCTTGAATAAACTTCT+TGG 0.251916 8_4:+41654910 Msa1326780:five_prime_UTR
GGTTTGTTCCTTTCAATCTC+TGG 0.253264 8_4:+41657689 Msa1326780:CDS
AGTTGTTTGGCTTTGGCATT+TGG 0.288675 8_4:+41660188 Msa1326780:CDS
CTTTCTCTATCTTGTGGTAT+TGG 0.299724 8_4:+41660986 Msa1326780:CDS
ACTCAAACAAATACTTAATC+AGG 0.308287 8_4:+41659169 Msa1326780:CDS
TACCAGCAGTTGTTTGGCTT+TGG 0.320403 8_4:+41660181 Msa1326780:CDS
CTTCAAGATCATTCACTTGT+GGG 0.321620 8_4:+41657668 Msa1326780:CDS
GCAGAAGCCTTATGGTTTGC+AGG 0.334010 8_4:+41659113 Msa1326780:CDS
CACCATTACCAGCAGTTGTT+TGG 0.352388 8_4:+41660175 Msa1326780:CDS
TTCTCAATCCATCTTCTTTG+CGG 0.362994 8_4:+41659238 Msa1326780:CDS
GGGTCTGCAGTACTTTGCTT+AGG 0.387991 8_4:+41661075 Msa1326780:CDS
AAGTTCTTACATTTACAGTA+TGG 0.389545 8_4:-41661177 None:intergenic
AACAAGAAGCTTTCGTTGAT+AGG 0.397043 8_4:+41657788 Msa1326780:CDS
GTTTGTTCCTTTCAATCTCT+GGG 0.399249 8_4:+41657690 Msa1326780:CDS
GGCATGATGCAGAAGCCTTA+TGG 0.399429 8_4:+41659105 Msa1326780:CDS
CCTAGCTAGCTCTTTCGAAC+AGG 0.417653 8_4:+41654939 Msa1326780:five_prime_UTR
TTTGTATGTAGTAGACCAAT+TGG 0.426393 8_4:-41661769 None:intergenic
GTGGTTGTTGGAGCTGTTGT+GGG 0.427981 8_4:+41660958 Msa1326780:CDS
AAACATGGGGAAAGAATGAA+TGG 0.435566 8_4:-41661840 None:intergenic
GGGTCAGATTTCACGGTTGA+AGG 0.444202 8_4:-41659197 None:intergenic
GAATGTGAAGACGGCATCCC+AGG 0.445039 8_4:-41659218 None:intergenic
AGTGGTTGTTGGAGCTGTTG+TGG 0.446450 8_4:+41660957 Msa1326780:CDS
CATCCCAGGGTCAGATTTCA+CGG 0.446760 8_4:-41659204 None:intergenic
TACTGTAAATGTAAGAACTT+GGG 0.450503 8_4:+41661180 Msa1326780:three_prime_UTR
TGGATAGTAAGTGCCCTCTT+TGG 0.458814 8_4:+41659065 Msa1326780:CDS
AAACATGACCGCAAAGAAGA+TGG 0.468037 8_4:-41659246 None:intergenic
AAGGCTCATTATTCCAGCTC+AGG 0.478313 8_4:-41661362 None:intergenic
AACAAGTACTACATTAGCAT+TGG 0.482132 8_4:+41654841 Msa1326780:five_prime_UTR
AGCCAAACAACTGCTGGTAA+TGG 0.486744 8_4:-41660177 None:intergenic
CCTGTTCGAAAGAGCTAGCT+AGG 0.490373 8_4:-41654939 None:intergenic
ATACTGTAAATGTAAGAACT+TGG 0.491240 8_4:+41661179 Msa1326780:three_prime_UTR
ATAGCGCATAGCAGTTGTTA+AGG 0.494577 8_4:-41661293 None:intergenic
GCTTCAAGATCATTCACTTG+TGG 0.496350 8_4:+41657667 Msa1326780:CDS
ACAGTGAGCCAAGTGGTTGT+TGG 0.497938 8_4:+41660946 Msa1326780:CDS
GTGTATTTATAGGCACCAAT+TGG 0.500619 8_4:+41661754 Msa1326780:three_prime_UTR
TGCCAAAGCCAAACAACTGC+TGG 0.514847 8_4:-41660183 None:intergenic
GAAAAGAGGAAGTGATATGT+TGG 0.514955 8_4:-41661323 None:intergenic
TAAGAGTTGATTCCACGTCC+TGG 0.534079 8_4:-41657840 None:intergenic
GCTGTTGTTTACAGAGCAAG+TGG 0.538062 8_4:+41659045 Msa1326780:intron
AAATACACATGCAGTGAGCA+AGG 0.539114 8_4:-41661739 None:intergenic
GTAAGAACTGCTCAGAGAGA+TGG 0.542961 8_4:+41657736 Msa1326780:CDS
CAGAAGCCTTATGGTTTGCA+GGG 0.543056 8_4:+41659114 Msa1326780:CDS
CAACAGCTCCAACAACCACT+TGG 0.543736 8_4:-41660954 None:intergenic
AGAACAACATTGCTGAAAAG+AGG 0.545590 8_4:-41661337 None:intergenic
GGTCAACTTTCTCTATCTTG+TGG 0.546263 8_4:+41660980 Msa1326780:CDS
GAAGCCTTATGGTTTGCAGG+GGG 0.547181 8_4:+41659116 Msa1326780:CDS
AGGAAGTGATATGTTGGAGT+GGG 0.552093 8_4:-41661317 None:intergenic
GTTAATGGTAGAAGAAAACA+TGG 0.562383 8_4:-41661855 None:intergenic
CAGAGAGATGGAAAGAGTGA+TGG 0.564058 8_4:+41657748 Msa1326780:CDS
ATAGCAAAGCGTGGCTGTTG+CGG 0.565629 8_4:-41657563 None:intergenic
CAACCGTGAAATCTGACCCT+GGG 0.567329 8_4:+41659201 Msa1326780:CDS
GGAATCAACTCTTAATCGAC+TGG 0.570438 8_4:+41657849 Msa1326780:CDS
TCAACCGTGAAATCTGACCC+TGG 0.578334 8_4:+41659200 Msa1326780:CDS
AATGTTGTTCTATCCTGAGC+TGG 0.585987 8_4:+41661349 Msa1326780:three_prime_UTR
AACATGGGGAAAGAATGAAT+GGG 0.586785 8_4:-41661839 None:intergenic
AAGCCTTATGGTTTGCAGGG+GGG 0.591130 8_4:+41659117 Msa1326780:CDS
GATCTTGAAGCAGATAAACT+AGG 0.591700 8_4:-41657655 None:intergenic
GCGTGGCTGTTGCGGTCATG+TGG 0.598281 8_4:-41657555 None:intergenic
AACGATTCTGACCCACAAAG+AGG 0.600535 8_4:-41661043 None:intergenic
ATGGATTGAGAATGTGAAGA+CGG 0.609166 8_4:-41659227 None:intergenic
AATACACATGCAGTGAGCAA+GGG 0.609500 8_4:-41661738 None:intergenic
AATGTGAAGACGGCATCCCA+GGG 0.613656 8_4:-41659217 None:intergenic
GAGGAAGTGATATGTTGGAG+TGG 0.618288 8_4:-41661318 None:intergenic
TGGGTGAAAAGTGCGATGGA+TGG 0.619297 8_4:+41657709 Msa1326780:CDS
ACTGTAAATGTAAGAACTTG+GGG 0.632523 8_4:+41661181 Msa1326780:three_prime_UTR
AGAAGCCTTATGGTTTGCAG+GGG 0.644085 8_4:+41659115 Msa1326780:CDS
TGGTTGTTGGAGCTGTTGTG+GGG 0.650107 8_4:+41660959 Msa1326780:CDS
TTAATGGTAGAAGAAAACAT+GGG 0.653817 8_4:-41661854 None:intergenic
TAATGGTAGAAGAAAACATG+GGG 0.673817 8_4:-41661853 None:intergenic
TCTCTGGGTGAAAAGTGCGA+TGG 0.680175 8_4:+41657705 Msa1326780:CDS
AGATGGATTATAGCAAAGCG+TGG 0.685105 8_4:-41657572 None:intergenic
ACTTCATACAGTGAGCCAAG+TGG 0.707082 8_4:+41660939 Msa1326780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAT+AGG + chr8_4:41655680-41655699 Msa1326780:intron 0.0%
!!! AATATATTATTATTTTTGAC+AGG + chr8_4:41655441-41655460 Msa1326780:intron 10.0%
!!! ATTTTAGTTATAAGTAATTA+TGG + chr8_4:41656829-41656848 Msa1326780:intron 10.0%
!!! TATATTTTTATATGTTTCTT+TGG + chr8_4:41660113-41660132 Msa1326780:intron 10.0%
!! GAATTGAATTGATTAAAAAA+TGG - chr8_4:41654896-41654915 None:intergenic 15.0%
!! TTAATAATTAACAATTGTCT+TGG - chr8_4:41655415-41655434 None:intergenic 15.0%
!!! ATTTTAGTTTTCTGTAATTA+TGG + chr8_4:41655467-41655486 Msa1326780:intron 15.0%
!! ACAAAAGTTGTTAAAAAAAA+TGG - chr8_4:41656236-41656255 None:intergenic 15.0%
!! TTATAACTAAAATTCAAAAG+GGG - chr8_4:41656822-41656841 None:intergenic 15.0%
!! CTTATAACTAAAATTCAAAA+GGG - chr8_4:41656823-41656842 None:intergenic 15.0%
!! ACTTATAACTAAAATTCAAA+AGG - chr8_4:41656824-41656843 None:intergenic 15.0%
!! ATATAATTATTGCAAAAGAA+AGG + chr8_4:41658080-41658099 Msa1326780:intron 15.0%
!! AAATATGAAGATTGAAAAAA+AGG - chr8_4:41658313-41658332 None:intergenic 15.0%
!! CATTTCCTTATAAAAAATAA+CGG - chr8_4:41658779-41658798 None:intergenic 15.0%
!! TTAATATTGTGTAATTGTAA+AGG + chr8_4:41658871-41658890 Msa1326780:intron 15.0%
!! ATTATATTAAGTGAACATTA+AGG + chr8_4:41658994-41659013 Msa1326780:intron 15.0%
!!! ATTATGTATTCTTTAGAAAA+TGG + chr8_4:41659379-41659398 Msa1326780:intron 15.0%
!!! TAGTTTTTAGTATAGTTTTT+TGG - chr8_4:41660771-41660790 None:intergenic 15.0%
!! TTACTGAATTGAATTATTGT+AGG + chr8_4:41655222-41655241 Msa1326780:intron 20.0%
!!! ATTTTGTTTTTTCGTATAAG+TGG + chr8_4:41656055-41656074 Msa1326780:intron 20.0%
!!! ATTGATTTACAAAGAAAATG+AGG - chr8_4:41656328-41656347 None:intergenic 20.0%
!! CCATTTCAATGATAATTTAT+GGG - chr8_4:41656357-41656376 None:intergenic 20.0%
!! ACCATTTCAATGATAATTTA+TGG - chr8_4:41656358-41656377 None:intergenic 20.0%
!!! TAATTCGTTTAACTTTTTAG+CGG + chr8_4:41656403-41656422 Msa1326780:intron 20.0%
!! TTCACGATTTGATTAAAAAA+TGG - chr8_4:41656603-41656622 None:intergenic 20.0%
!! ATAAGTAAACAAGAATCAAA+TGG - chr8_4:41657333-41657352 None:intergenic 20.0%
!!! TTTTTCAAGTATCTTTGTTT+AGG - chr8_4:41657622-41657641 None:intergenic 20.0%
!!! ATTTATCTTTTTCTATTGTG+TGG + chr8_4:41657949-41657968 Msa1326780:intron 20.0%
!!! ATTTTATTGAAGAAATAGAC+TGG + chr8_4:41658002-41658021 Msa1326780:intron 20.0%
!! TGCAATAATTATATCATCAA+CGG - chr8_4:41658074-41658093 None:intergenic 20.0%
!!! GACAAAAAGATTTTAAAACT+TGG + chr8_4:41658104-41658123 Msa1326780:intron 20.0%
!! TCAAAAAATTTAGCATCATT+TGG + chr8_4:41658464-41658483 Msa1326780:intron 20.0%
!!! TATCACCGTTATTTTTTATA+AGG + chr8_4:41658771-41658790 Msa1326780:intron 20.0%
!!! TGCAATTTCAGTTTTAATAT+GGG - chr8_4:41658934-41658953 None:intergenic 20.0%
!!! TTGCAATTTCAGTTTTAATA+TGG - chr8_4:41658935-41658954 None:intergenic 20.0%
!! GTTCACTTAATATAATACAA+TGG - chr8_4:41658990-41659009 None:intergenic 20.0%
!! ATCATTTGAATGGAAATAAA+AGG - chr8_4:41659298-41659317 None:intergenic 20.0%
!! CCATATAGGATTTAATATAT+AGG - chr8_4:41659599-41659618 None:intergenic 20.0%
!! CCTATATATTAAATCCTATA+TGG + chr8_4:41659596-41659615 Msa1326780:intron 20.0%
!! TGTCAAAAAATTAATTGATG+TGG + chr8_4:41659639-41659658 Msa1326780:intron 20.0%
!! ATGCAATTCTATTGTATTTA+TGG - chr8_4:41660090-41660109 None:intergenic 20.0%
!! AGTATATAATGTTAGTAGTT+AGG - chr8_4:41660663-41660682 None:intergenic 20.0%
!! TTGTAGATTAATATGCTATA+AGG - chr8_4:41661394-41661413 None:intergenic 20.0%
! CAATTCTTGAATAAACTTCT+TGG + chr8_4:41654910-41654929 Msa1326780:five_prime_UTR 25.0%
! CAAAAATCAAAATGAATGTG+AGG - chr8_4:41654976-41654995 None:intergenic 25.0%
!!! ATTTTGATTTTTGTTGTTGC+TGG + chr8_4:41654983-41655002 Msa1326780:intron 25.0%
! GGATGTGAATTTATTAGAAA+TGG + chr8_4:41655114-41655133 Msa1326780:intron 25.0%
! TCATTCTCATATCACAAAAA+TGG - chr8_4:41655189-41655208 None:intergenic 25.0%
! TGATATGAGAATGAATGAAA+TGG + chr8_4:41655195-41655214 Msa1326780:intron 25.0%
!!! AGTTGAGGGATTTTAATTAT+AGG - chr8_4:41655535-41655554 None:intergenic 25.0%
!! TTTGAGATATATTCAATGAG+AGG + chr8_4:41655587-41655606 Msa1326780:intron 25.0%
!! GTTTTTACTAGTATTCAATC+AGG + chr8_4:41655737-41655756 Msa1326780:intron 25.0%
!! TATTTGTTAGAATGCATAGA+GGG - chr8_4:41656108-41656127 None:intergenic 25.0%
!! ATATTTGTTAGAATGCATAG+AGG - chr8_4:41656109-41656128 None:intergenic 25.0%
! CCCATAAATTATCATTGAAA+TGG + chr8_4:41656354-41656373 Msa1326780:intron 25.0%
! TCACAAGATAAAATAACATG+GGG - chr8_4:41656451-41656470 None:intergenic 25.0%
! CTCACAAGATAAAATAACAT+GGG - chr8_4:41656452-41656471 None:intergenic 25.0%
! TCTCACAAGATAAAATAACA+TGG - chr8_4:41656453-41656472 None:intergenic 25.0%
! TGATTAAAAAATGGAAAGTG+TGG - chr8_4:41656594-41656613 None:intergenic 25.0%
! GGATATTGATATACGAAATT+TGG - chr8_4:41656641-41656660 None:intergenic 25.0%
! CAAAAATTACAGCATAAAAG+GGG - chr8_4:41656748-41656767 None:intergenic 25.0%
! CCAAAAATTACAGCATAAAA+GGG - chr8_4:41656749-41656768 None:intergenic 25.0%
! ACCAAAAATTACAGCATAAA+AGG - chr8_4:41656750-41656769 None:intergenic 25.0%
! TTCTAATTATAACTCCTCTT+GGG + chr8_4:41656880-41656899 Msa1326780:intron 25.0%
!! CTATTTCTTATATAACTTGC+TGG - chr8_4:41656922-41656941 None:intergenic 25.0%
! ACATAAATCTAGATCATACT+CGG - chr8_4:41657046-41657065 None:intergenic 25.0%
! ATTATAGACTTGCATAGATT+AGG + chr8_4:41657393-41657412 Msa1326780:intron 25.0%
! TGATGTATAAAAAAAGACAG+TGG - chr8_4:41657499-41657518 None:intergenic 25.0%
!!! ACTGTCTTTTTTTATACATC+AGG + chr8_4:41657498-41657517 Msa1326780:intron 25.0%
!!! ATCCATCTAACAATTTTTTG+AGG + chr8_4:41657587-41657606 Msa1326780:CDS 25.0%
! ATGAGCAGAAAAAACAATAT+AGG - chr8_4:41657931-41657950 None:intergenic 25.0%
! TATCCATTCTTAATAGCTTA+AGG + chr8_4:41658144-41658163 Msa1326780:intron 25.0%
! ATCCATTCTTAATAGCTTAA+GGG + chr8_4:41658145-41658164 Msa1326780:intron 25.0%
! TTAGATTTGTATGATAGGAT+AGG - chr8_4:41658257-41658276 None:intergenic 25.0%
!!! TGGTTTTAGATTTGTATGAT+AGG - chr8_4:41658262-41658281 None:intergenic 25.0%
! TTGTCAAAAGAAAAACCATT+TGG + chr8_4:41658664-41658683 Msa1326780:intron 25.0%
! AAACCAAGTTTAGATTCTTA+AGG + chr8_4:41658694-41658713 Msa1326780:intron 25.0%
!!! TATTTCAAGTTGTGAAGAAA+AGG - chr8_4:41658828-41658847 None:intergenic 25.0%
! AATAACAAAAACACCAAAGA+GGG - chr8_4:41659081-41659100 None:intergenic 25.0%
! AAATAACAAAAACACCAAAG+AGG - chr8_4:41659082-41659101 None:intergenic 25.0%
!!! TCTTTGGTGTTTTTGTTATT+TGG + chr8_4:41659081-41659100 Msa1326780:CDS 25.0%
! ACTCAAACAAATACTTAATC+AGG + chr8_4:41659169-41659188 Msa1326780:CDS 25.0%
! TTTGAATGGAAATAAAAGGT+GGG - chr8_4:41659294-41659313 None:intergenic 25.0%
! ATTTGAATGGAAATAAAAGG+TGG - chr8_4:41659295-41659314 None:intergenic 25.0%
! TTTGTAATCGATCATTTGAA+TGG - chr8_4:41659308-41659327 None:intergenic 25.0%
! ACATCAATTCTTAACCATAT+AGG - chr8_4:41659613-41659632 None:intergenic 25.0%
! TATATGGTTAAGAATTGATG+TGG + chr8_4:41659612-41659631 Msa1326780:intron 25.0%
! TTGACAGTCAAATATCTATT+TGG - chr8_4:41659884-41659903 None:intergenic 25.0%
! TTGAAACAAAACAGAGATAA+TGG - chr8_4:41659929-41659948 None:intergenic 25.0%
! ATTCTTCTAGATGAATATTC+TGG - chr8_4:41659976-41659995 None:intergenic 25.0%
! GATACACAAGTAAACTAAAT+TGG - chr8_4:41660241-41660260 None:intergenic 25.0%
! ACATAAATTTGATCTCATAC+AGG + chr8_4:41660388-41660407 Msa1326780:intron 25.0%
! CATAAATTTGATCTCATACA+GGG + chr8_4:41660389-41660408 Msa1326780:intron 25.0%
!!! TTAGTATAGTTTTTTGGTAG+TGG - chr8_4:41660765-41660784 None:intergenic 25.0%
! AACATATTATGTGCACTAAA+TGG - chr8_4:41660856-41660875 None:intergenic 25.0%
! AAGTTCTTACATTTACAGTA+TGG - chr8_4:41661180-41661199 None:intergenic 25.0%
! ATACTGTAAATGTAAGAACT+TGG + chr8_4:41661179-41661198 Msa1326780:three_prime_UTR 25.0%
! TACTGTAAATGTAAGAACTT+GGG + chr8_4:41661180-41661199 Msa1326780:three_prime_UTR 25.0%
! ATATGCTATAAGGACAATTA+AGG - chr8_4:41661384-41661403 None:intergenic 25.0%
! AATCTACAATGTAAGCAAAT+AGG + chr8_4:41661405-41661424 Msa1326780:intron 25.0%
! TGAATTGCCAACTTAAAATT+TGG + chr8_4:41661546-41661565 Msa1326780:intron 25.0%
!!! AAGTCAACCAAATTTTAAGT+TGG - chr8_4:41661556-41661575 None:intergenic 25.0%
! TTAATGGTAGAAGAAAACAT+GGG - chr8_4:41661857-41661876 None:intergenic 25.0%
AACAAGTACTACATTAGCAT+TGG + chr8_4:41654841-41654860 Msa1326780:five_prime_UTR 30.0%
GATTAAAAAATGGACAAGTG+TGG - chr8_4:41654886-41654905 None:intergenic 30.0%
TGGAATTTCTTTGATTCCTT+TGG + chr8_4:41655003-41655022 Msa1326780:intron 30.0%
!! GGTGGATTTGAATTTTGAAA+CGG + chr8_4:41655046-41655065 Msa1326780:intron 30.0%
!!! GTGGATTTGAATTTTGAAAC+GGG + chr8_4:41655047-41655066 Msa1326780:intron 30.0%
!!! AGTTTGGTTTCTTGTTGTTT+TGG + chr8_4:41655070-41655089 Msa1326780:intron 30.0%
! ATTAGAAATGGACTTGAATG+TGG + chr8_4:41655126-41655145 Msa1326780:intron 30.0%
! TTAGAAATGGACTTGAATGT+GGG + chr8_4:41655127-41655146 Msa1326780:intron 30.0%
GTTTACTCTTTGTACTAGTA+GGG - chr8_4:41655300-41655319 None:intergenic 30.0%
! TCAAATTTGATTTCCTATGC+AGG - chr8_4:41655572-41655591 None:intergenic 30.0%
TTTACTAGTATTCAATCAGG+TGG + chr8_4:41655740-41655759 Msa1326780:intron 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_4:41656035-41656054 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_4:41656036-41656055 None:intergenic 30.0%
CATAGAGGGTAATAATTGTT+TGG - chr8_4:41656094-41656113 None:intergenic 30.0%
CATGCACTTAATATGTATCT+GGG - chr8_4:41656151-41656170 None:intergenic 30.0%
CAGATACATATTAAGTGCAT+GGG + chr8_4:41656150-41656169 Msa1326780:intron 30.0%
AAATGGTTGAAAAAACACAG+TGG - chr8_4:41656219-41656238 None:intergenic 30.0%
! ACTTTATCTCTCTTTTGTTC+TGG + chr8_4:41656289-41656308 Msa1326780:intron 30.0%
CAGAAATCAAAATGAATGTG+AGG - chr8_4:41656693-41656712 None:intergenic 30.0%
!!! ATTTTGATTTCTGTTGTTGC+TGG + chr8_4:41656700-41656719 Msa1326780:intron 30.0%
! CCCTTTTATGCTGTAATTTT+TGG + chr8_4:41656746-41656765 Msa1326780:intron 30.0%
CTTCTAATTATAACTCCTCT+TGG + chr8_4:41656879-41656898 Msa1326780:intron 30.0%
TCTGTCCTAATGTACTTATT+GGG + chr8_4:41657139-41657158 Msa1326780:intron 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_4:41656035-41656054 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_4:41656036-41656055 None:intergenic 30.0%
GTTTATCGTAGTTGTATAAG+TGG + chr8_4:41657214-41657233 Msa1326780:intron 30.0%
CATAGATTAGGTTCAATTGA+CGG + chr8_4:41657405-41657424 Msa1326780:intron 30.0%
! ACACATTTAACTTAAGTGGA+TGG + chr8_4:41657429-41657448 Msa1326780:intron 30.0%
! CACATTTAACTTAAGTGGAT+GGG + chr8_4:41657430-41657449 Msa1326780:intron 30.0%
GTCCTCAAAAAATTGTTAGA+TGG - chr8_4:41657592-41657611 None:intergenic 30.0%
TATTGATGAATCTGAATCTC+TGG - chr8_4:41658050-41658069 None:intergenic 30.0%
AGCATACTTTGATATAGTCA+AGG + chr8_4:41658359-41658378 Msa1326780:intron 30.0%
CATCATTTGGAAAATGTTCA+GGG + chr8_4:41658477-41658496 Msa1326780:intron 30.0%
! TATTTGAAATTGCTCCAAGA+AGG - chr8_4:41658527-41658546 None:intergenic 30.0%
!!! CTTGGTTTTTTAGTTCCAAA+TGG - chr8_4:41658682-41658701 None:intergenic 30.0%
TAAGTGAACATTAAGGTATG+AGG + chr8_4:41659001-41659020 Msa1326780:intron 30.0%
AAGTGAACATTAAGGTATGA+GGG + chr8_4:41659002-41659021 Msa1326780:intron 30.0%
!!! TTGGTGTTTTTGTTATTTGG+AGG + chr8_4:41659084-41659103 Msa1326780:CDS 30.0%
! GATAGTTTGAAGTTTGAACT+TGG + chr8_4:41659661-41659680 Msa1326780:intron 30.0%
AGGAAATTGAGTGAAAACAA+GGG + chr8_4:41659814-41659833 Msa1326780:intron 30.0%
TGAATATTCTGGCAACTATT+TGG - chr8_4:41659965-41659984 None:intergenic 30.0%
!!! CTTTTTTATTCTCGTATCCT+TGG + chr8_4:41660260-41660279 Msa1326780:intron 30.0%
! TTTTGTGTACTTCATGACAT+TGG + chr8_4:41660305-41660324 Msa1326780:intron 30.0%
! AAGACTATGATGGAAAGTTA+AGG - chr8_4:41660334-41660353 None:intergenic 30.0%
TAACAAAGTTCTTGTGAAGA+GGG - chr8_4:41660428-41660447 None:intergenic 30.0%
!! ACATCCAAAGGATTTTGAAA+AGG + chr8_4:41660620-41660639 Msa1326780:intron 30.0%
! ATCTCCTTTTCAAAATCCTT+TGG - chr8_4:41660627-41660646 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr8_4:41660720-41660739 Msa1326780:intron 30.0%
AAACTAACATTCGCTTAGTA+TGG + chr8_4:41660785-41660804 Msa1326780:intron 30.0%
!!! ATGCTTTTTTATCCTCTTTG+TGG + chr8_4:41661031-41661050 Msa1326780:CDS 30.0%
!!! TGCTTTTTTATCCTCTTTGT+GGG + chr8_4:41661032-41661051 Msa1326780:CDS 30.0%
!!! GTCAGAATCGTTGTTATTTT+GGG + chr8_4:41661054-41661073 Msa1326780:CDS 30.0%
!!! TCAGAATCGTTGTTATTTTG+GGG + chr8_4:41661055-41661074 Msa1326780:CDS 30.0%
! CTTAGGTTTTCTTTTACATG+TGG + chr8_4:41661092-41661111 Msa1326780:CDS 30.0%
ACTGTAAATGTAAGAACTTG+GGG + chr8_4:41661181-41661200 Msa1326780:three_prime_UTR 30.0%
CTTGCTTTCTCACAAAAATT+CGG + chr8_4:41661708-41661727 Msa1326780:three_prime_UTR 30.0%
TTTGTATGTAGTAGACCAAT+TGG - chr8_4:41661772-41661791 None:intergenic 30.0%
TAATGGTAGAAGAAAACATG+GGG - chr8_4:41661856-41661875 None:intergenic 30.0%
GTTAATGGTAGAAGAAAACA+TGG - chr8_4:41661858-41661877 None:intergenic 30.0%
!!! GCTGCTGTAATTTTTGGAAT+TGG + chr8_4:41655025-41655044 Msa1326780:intron 35.0%
!!! GCTGTAATTTTTGGAATTGG+TGG + chr8_4:41655028-41655047 Msa1326780:intron 35.0%
!!! TGAATTTTGAAACGGGAGTT+TGG + chr8_4:41655054-41655073 Msa1326780:intron 35.0%
TGCTCGTATCAGAATTTATG+TGG + chr8_4:41655093-41655112 Msa1326780:intron 35.0%
! TAGAAATGGACTTGAATGTG+GGG + chr8_4:41655128-41655147 Msa1326780:intron 35.0%
TCTCTACAAGAAACTCAAAG+AGG - chr8_4:41655159-41655178 None:intergenic 35.0%
GGTTTACTCTTTGTACTAGT+AGG - chr8_4:41655301-41655320 None:intergenic 35.0%
AGTAACCTAGATAACCTTAC+TGG + chr8_4:41655345-41655364 Msa1326780:intron 35.0%
TCTTACCAGTAAGGTTATCT+AGG - chr8_4:41655353-41655372 None:intergenic 35.0%
GATAACCTTACTGGTAAGAT+TGG + chr8_4:41655354-41655373 Msa1326780:intron 35.0%
TTAACAATTGTCTTGGCTGT+TGG - chr8_4:41655408-41655427 None:intergenic 35.0%
TATTCAATGAGAGGAGATTC+TGG + chr8_4:41655596-41655615 Msa1326780:intron 35.0%
! TTTGCTGCTTCAACAAGATT+GGG - chr8_4:41655859-41655878 None:intergenic 35.0%
!! TTTTGCTGCTTCAACAAGAT+TGG - chr8_4:41655860-41655879 None:intergenic 35.0%
GCTATCAATAAGCTCATACT+CGG - chr8_4:41655916-41655935 None:intergenic 35.0%
TAGAGAATCCCAGATACAAT+CGG + chr8_4:41656024-41656043 Msa1326780:intron 35.0%
! GTATCTGGGATTCTTTCAAA+TGG - chr8_4:41656137-41656156 None:intergenic 35.0%
CCATGCACTTAATATGTATC+TGG - chr8_4:41656152-41656171 None:intergenic 35.0%
CCAGATACATATTAAGTGCA+TGG + chr8_4:41656149-41656168 Msa1326780:intron 35.0%
AACAACGCTTGAATTGATGA+CGG - chr8_4:41656506-41656525 None:intergenic 35.0%
! TTTAACGTGTGATGATAGTG+CGG - chr8_4:41656537-41656556 None:intergenic 35.0%
ACGTTAAACAAGTACTACGT+TGG + chr8_4:41656549-41656568 Msa1326780:intron 35.0%
! TGTGTGATGATTCTGAGAAT+TGG + chr8_4:41656769-41656788 Msa1326780:intron 35.0%
CAATAAGTACATTAGGACAG+AGG - chr8_4:41657140-41657159 None:intergenic 35.0%
CTCTGTCCTAATGTACTTAT+TGG + chr8_4:41657138-41657157 Msa1326780:intron 35.0%
TCCTAATGTACTTATTGGGT+TGG + chr8_4:41657143-41657162 Msa1326780:intron 35.0%
ACCAACCCAATAAGTACATT+AGG - chr8_4:41657147-41657166 None:intergenic 35.0%
AAGAGAATCCCAGATACAAT+CGG + chr8_4:41657178-41657197 Msa1326780:intron 35.0%
! CGGTACACATTTAACTTAAG+TGG + chr8_4:41657425-41657444 Msa1326780:intron 35.0%
GATCTTGAAGCAGATAAACT+AGG - chr8_4:41657658-41657677 None:intergenic 35.0%
CTTCAAGATCATTCACTTGT+GGG + chr8_4:41657668-41657687 Msa1326780:CDS 35.0%
GTTTGTTCCTTTCAATCTCT+GGG + chr8_4:41657690-41657709 Msa1326780:CDS 35.0%
AACAAGAAGCTTTCGTTGAT+AGG + chr8_4:41657788-41657807 Msa1326780:CDS 35.0%
CTAACATGGAGTGGTAATTT+AGG - chr8_4:41657893-41657912 None:intergenic 35.0%
CTATTGTGTGGAATGAGTAT+AGG + chr8_4:41657961-41657980 Msa1326780:intron 35.0%
AGCCCTTAAGCTATTAAGAA+TGG - chr8_4:41658150-41658169 None:intergenic 35.0%
TTCAACCAGTTTGGACTTTA+TGG - chr8_4:41658181-41658200 None:intergenic 35.0%
AACAACCAGAGTGAATAACT+TGG + chr8_4:41658199-41658218 Msa1326780:intron 35.0%
GTTATCCAAGTTATTCACTC+TGG - chr8_4:41658207-41658226 None:intergenic 35.0%
ACTTGGATAACAAACCGATA+AGG + chr8_4:41658216-41658235 Msa1326780:intron 35.0%
TTTGTATGATAGGATAGGCT+CGG - chr8_4:41658252-41658271 None:intergenic 35.0%
TAAAACCAAGTCTAGTGCTT+TGG + chr8_4:41658274-41658293 Msa1326780:intron 35.0%
! AAAATCCAAAGCACTAGACT+TGG - chr8_4:41658282-41658301 None:intergenic 35.0%
!! AAGTCTAGTGCTTTGGATTT+TGG + chr8_4:41658281-41658300 Msa1326780:intron 35.0%
CCAACATATCAGTAACAACA+GGG - chr8_4:41658419-41658438 None:intergenic 35.0%
TCCAACATATCAGTAACAAC+AGG - chr8_4:41658420-41658439 None:intergenic 35.0%
GCATCATTTGGAAAATGTTC+AGG + chr8_4:41658476-41658495 Msa1326780:intron 35.0%
CCAAGTTTAGATTCTTAAGG+CGG + chr8_4:41658697-41658716 Msa1326780:intron 35.0%
!! GTTTTAATATGGGCAAGCTA+TGG - chr8_4:41658924-41658943 None:intergenic 35.0%
! ATGGATTGAGAATGTGAAGA+CGG - chr8_4:41659230-41659249 None:intergenic 35.0%
TTCTCAATCCATCTTCTTTG+CGG + chr8_4:41659238-41659257 Msa1326780:CDS 35.0%
! AGTTTATGAGAGCATAGATC+TGG + chr8_4:41659502-41659521 Msa1326780:intron 35.0%
TTCTACAGATCTATGACAAC+AGG + chr8_4:41659794-41659813 Msa1326780:intron 35.0%
CAGGAAATTGAGTGAAAACA+AGG + chr8_4:41659813-41659832 Msa1326780:intron 35.0%
GGAAATTGAGTGAAAACAAG+GGG + chr8_4:41659815-41659834 Msa1326780:intron 35.0%
TCATCTAGAAGAATCAACTC+AGG + chr8_4:41659982-41660001 Msa1326780:intron 35.0%
CATCTAGAAGAATCAACTCA+GGG + chr8_4:41659983-41660002 Msa1326780:intron 35.0%
TATGTCTTCTCTCTACTTCA+TGG + chr8_4:41660029-41660048 Msa1326780:intron 35.0%
ACACAAAAAAGCAGAGAGTA+AGG - chr8_4:41660293-41660312 None:intergenic 35.0%
GGTAGTAACTAAGACTATGA+TGG - chr8_4:41660344-41660363 None:intergenic 35.0%
TAGTTACTACCTCATCCATT+AGG + chr8_4:41660353-41660372 Msa1326780:intron 35.0%
TGTAAACATGATGCACCTAA+TGG - chr8_4:41660371-41660390 None:intergenic 35.0%
GTAACAAAGTTCTTGTGAAG+AGG - chr8_4:41660429-41660448 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG + chr8_4:41660725-41660744 Msa1326780:intron 35.0%
!!! TATAGTTTTTTGGTAGTGGC+CGG - chr8_4:41660761-41660780 None:intergenic 35.0%
!! TTTGTTTTCAGTCATACCTG+CGG + chr8_4:41660905-41660924 Msa1326780:intron 35.0%
CTTTCTCTATCTTGTGGTAT+TGG + chr8_4:41660986-41661005 Msa1326780:CDS 35.0%
!! CTATCTTGTGGTATTGGTTA+TGG + chr8_4:41660992-41661011 Msa1326780:CDS 35.0%
!!! GGTCAGAATCGTTGTTATTT+TGG + chr8_4:41661053-41661072 Msa1326780:CDS 35.0%
! TTTTACATGTGGTTCGCAAT+TGG + chr8_4:41661103-41661122 Msa1326780:CDS 35.0%
GAAAAGAGGAAGTGATATGT+TGG - chr8_4:41661326-41661345 None:intergenic 35.0%
AGAACAACATTGCTGAAAAG+AGG - chr8_4:41661340-41661359 None:intergenic 35.0%
ACCTAACATAGTGCATTCTT+CGG - chr8_4:41661497-41661516 None:intergenic 35.0%
AACTAAAATTGCTAGAGAGC+TGG - chr8_4:41661636-41661655 None:intergenic 35.0%
!!! CTCTAGCAATTTTAGTTCAC+TGG + chr8_4:41661639-41661658 Msa1326780:intron 35.0%
CTCACTGCATGTGTATTTAT+AGG + chr8_4:41661744-41661763 Msa1326780:three_prime_UTR 35.0%
GTGTATTTATAGGCACCAAT+TGG + chr8_4:41661754-41661773 Msa1326780:three_prime_UTR 35.0%
AACATGGGGAAAGAATGAAT+GGG - chr8_4:41661842-41661861 None:intergenic 35.0%
AAACATGGGGAAAGAATGAA+TGG - chr8_4:41661843-41661862 None:intergenic 35.0%
! AAGTGTGGTTTTCGTGTCTT+GGG - chr8_4:41654871-41654890 None:intergenic 40.0%
CCAAAAATTACAGCAGCCAA+AGG - chr8_4:41655022-41655041 None:intergenic 40.0%
! CCTTTGGCTGCTGTAATTTT+TGG + chr8_4:41655019-41655038 Msa1326780:intron 40.0%
AGCAGTTGGAGTACATATCT+TGG - chr8_4:41655322-41655341 None:intergenic 40.0%
TCTAGGTTACTACTAGCAGT+TGG - chr8_4:41655336-41655355 None:intergenic 40.0%
TCACACCAATCTTACCAGTA+AGG - chr8_4:41655362-41655381 None:intergenic 40.0%
ATGTTATGTATGCAGCTAGC+TGG - chr8_4:41655641-41655660 None:intergenic 40.0%
CAATCAGTACATTACGACAG+AGG - chr8_4:41655986-41656005 None:intergenic 40.0%
!! TCGTAATGTACTGATTGCGT+TGG + chr8_4:41655989-41656008 Msa1326780:intron 40.0%
! AAAACACAGTGGTTAGCTGT+AGG - chr8_4:41656208-41656227 None:intergenic 40.0%
! CAATTCAAGCGTTGTTGTCT+TGG + chr8_4:41656510-41656529 Msa1326780:intron 40.0%
! AAGTGTGGTTTTCGTGTCTT+TGG - chr8_4:41654871-41654890 None:intergenic 40.0%
CTGTTCGAAAAAGCTAGGAT+AGG - chr8_4:41656662-41656681 None:intergenic 40.0%
!!! CTATCCTAGCTTTTTCGAAC+AGG + chr8_4:41656660-41656679 Msa1326780:intron 40.0%
GTTACCTGTTCGAAAAAGCT+AGG - chr8_4:41656667-41656686 None:intergenic 40.0%
CAGCATAAAAGGGGTTACAA+AGG - chr8_4:41656739-41656758 None:intergenic 40.0%
ATAACTCCTCTTGGGAACTT+AGG + chr8_4:41656888-41656907 Msa1326780:intron 40.0%
! TATGCTGCTTCGACAAGATT+GGG - chr8_4:41656988-41657007 None:intergenic 40.0%
ACCCTCTGTGTATTCTAACA+AGG + chr8_4:41657287-41657306 Msa1326780:intron 40.0%
CCCTTGTTAGAATACACAGA+GGG - chr8_4:41657291-41657310 None:intergenic 40.0%
CCCTCTGTGTATTCTAACAA+GGG + chr8_4:41657288-41657307 Msa1326780:intron 40.0%
ACCCTTGTTAGAATACACAG+AGG - chr8_4:41657292-41657311 None:intergenic 40.0%
! AAAGACAGTGGTTAGCTGTA+GGG - chr8_4:41657487-41657506 None:intergenic 40.0%
! AAAAGACAGTGGTTAGCTGT+AGG - chr8_4:41657488-41657507 None:intergenic 40.0%
!! AGATGGATTATAGCAAAGCG+TGG - chr8_4:41657575-41657594 None:intergenic 40.0%
GCTTCAAGATCATTCACTTG+TGG + chr8_4:41657667-41657686 Msa1326780:CDS 40.0%
! GGTTTGTTCCTTTCAATCTC+TGG + chr8_4:41657689-41657708 Msa1326780:CDS 40.0%
! CTTTTCACCCAGAGATTGAA+AGG - chr8_4:41657700-41657719 None:intergenic 40.0%
! TGAGCCAAAGTTTTTGTTCC+AGG + chr8_4:41657822-41657841 Msa1326780:CDS 40.0%
ACGTCCTGGAACAAAAACTT+TGG - chr8_4:41657829-41657848 None:intergenic 40.0%
! AAAGTTTTTGTTCCAGGACG+TGG + chr8_4:41657828-41657847 Msa1326780:CDS 40.0%
GGAATCAACTCTTAATCGAC+TGG + chr8_4:41657849-41657868 Msa1326780:CDS 40.0%
TCAACTCTTAATCGACTGGT+CGG + chr8_4:41657853-41657872 Msa1326780:intron 40.0%
GTGGTAATTTAGGAAGGAAG+TGG - chr8_4:41657883-41657902 None:intergenic 40.0%
CATGGAGTGGTAATTTAGGA+AGG - chr8_4:41657889-41657908 None:intergenic 40.0%
ATTACCACTCCATGTTAGCT+TGG + chr8_4:41657895-41657914 Msa1326780:intron 40.0%
CTGAATCTCTGGATTCTGAA+TGG - chr8_4:41658039-41658058 None:intergenic 40.0%
CACTACCATAAAGTCCAAAC+TGG + chr8_4:41658173-41658192 Msa1326780:intron 40.0%
TCGGGAAATAGCAACCTTAT+CGG - chr8_4:41658233-41658252 None:intergenic 40.0%
TTGTATGATAGGATAGGCTC+GGG - chr8_4:41658251-41658270 None:intergenic 40.0%
!! AGTGCTTTGGATTTTGGAAG+TGG + chr8_4:41658287-41658306 Msa1326780:intron 40.0%
GTAACAACAGGGAACTCAAT+AGG - chr8_4:41658408-41658427 None:intergenic 40.0%
CCCTGTTGTTACTGATATGT+TGG + chr8_4:41658416-41658435 Msa1326780:intron 40.0%
TTTGGAAAATGTTCAGGGTG+TGG + chr8_4:41658482-41658501 Msa1326780:intron 40.0%
! ACCTACCTCATTTTCCTTCT+TGG + chr8_4:41658510-41658529 Msa1326780:intron 40.0%
TCCAAGAAGGAAAATGAGGT+AGG - chr8_4:41658514-41658533 None:intergenic 40.0%
TTGCTCCAAGAAGGAAAATG+AGG - chr8_4:41658518-41658537 None:intergenic 40.0%
CCGCCTTAAGAATCTAAACT+TGG - chr8_4:41658700-41658719 None:intergenic 40.0%
AGTATTTGAGTGCCAACCTT+AGG + chr8_4:41658958-41658977 Msa1326780:intron 40.0%
GTATTTGAGTGCCAACCTTA+GGG + chr8_4:41658959-41658978 Msa1326780:intron 40.0%
AAACATGACCGCAAAGAAGA+TGG - chr8_4:41659249-41659268 None:intergenic 40.0%
ACTTCTGAGCTTTCAGAATG+AGG - chr8_4:41659485-41659504 None:intergenic 40.0%
TCATGGAAATGCAGATGTGT+TGG + chr8_4:41660046-41660065 Msa1326780:intron 40.0%
! TGTTTCTTTGGTGATCATGC+AGG + chr8_4:41660125-41660144 Msa1326780:intron 40.0%
!! AGTTGTTTGGCTTTGGCATT+TGG + chr8_4:41660188-41660207 Msa1326780:CDS 40.0%
AACCACTTGAGCGATATCTT+GGG - chr8_4:41660592-41660611 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + chr8_4:41660726-41660745 Msa1326780:intron 40.0%
CATAATATATGCAAGGTCCG+GGG + chr8_4:41660727-41660746 Msa1326780:intron 40.0%
!!! ATAGTTTTTTGGTAGTGGCC+GGG - chr8_4:41660760-41660779 None:intergenic 40.0%
TTCGCTTAGTATGGTTCAAG+TGG + chr8_4:41660794-41660813 Msa1326780:intron 40.0%
CTTAGTATGGTTCAAGTGGT+AGG + chr8_4:41660798-41660817 Msa1326780:intron 40.0%
! TTGTTTTCAGTCATACCTGC+GGG + chr8_4:41660906-41660925 Msa1326780:intron 40.0%
GGTCAACTTTCTCTATCTTG+TGG + chr8_4:41660980-41660999 Msa1326780:CDS 40.0%
ATAGCGCATAGCAGTTGTTA+AGG - chr8_4:41661296-41661315 None:intergenic 40.0%
AGGAAGTGATATGTTGGAGT+GGG - chr8_4:41661320-41661339 None:intergenic 40.0%
AATGTTGTTCTATCCTGAGC+TGG + chr8_4:41661349-41661368 Msa1326780:three_prime_UTR 40.0%
ACCGAAGAATGCACTATGTT+AGG + chr8_4:41661493-41661512 Msa1326780:intron 40.0%
GAAGAATGCACTATGTTAGG+TGG + chr8_4:41661496-41661515 Msa1326780:intron 40.0%
GCAATTCACACAATACAGGA+GGG - chr8_4:41661534-41661553 None:intergenic 40.0%
GTTGGCAATTCACACAATAC+AGG - chr8_4:41661538-41661557 None:intergenic 40.0%
AATACACATGCAGTGAGCAA+GGG - chr8_4:41661741-41661760 None:intergenic 40.0%
AAATACACATGCAGTGAGCA+AGG - chr8_4:41661742-41661761 None:intergenic 40.0%
! CAAGTGTGGTTTTCGTGTCT+TGG - chr8_4:41654872-41654891 None:intergenic 45.0%
GATTTCCTATGCAGGCAGTT+CGG - chr8_4:41655564-41655583 None:intergenic 45.0%
! TTCAATCAGGTGGACTCTCT+TGG + chr8_4:41655750-41655769 Msa1326780:intron 45.0%
! TCAATCAGGTGGACTCTCTT+GGG + chr8_4:41655751-41655770 Msa1326780:intron 45.0%
TGTGAAGCTAGCAAGCAGAT+AGG + chr8_4:41655885-41655904 Msa1326780:intron 45.0%
TATCTTGTGAGACACGAACC+AGG + chr8_4:41656461-41656480 Msa1326780:intron 45.0%
! GGCATTTTCACACCAAAACC+TGG - chr8_4:41656482-41656501 None:intergenic 45.0%
!! AACGCTTGAATTGATGACGG+TGG - chr8_4:41656503-41656522 None:intergenic 45.0%
ATTACGCCTAAGTTCCCAAG+AGG - chr8_4:41656897-41656916 None:intergenic 45.0%
! CTATGCTGCTTCGACAAGAT+TGG - chr8_4:41656989-41657008 None:intergenic 45.0%
TGTGAAGCTAGCAAGCAGAT+AGG + chr8_4:41655885-41655904 Msa1326780:intron 45.0%
GTAAGAACTGCTCAGAGAGA+TGG + chr8_4:41657736-41657755 Msa1326780:CDS 45.0%
CAGAGAGATGGAAAGAGTGA+TGG + chr8_4:41657748-41657767 Msa1326780:CDS 45.0%
! TAAGAGTTGATTCCACGTCC+TGG - chr8_4:41657843-41657862 None:intergenic 45.0%
CAGTAGAAGCCAAGCTAACA+TGG - chr8_4:41657907-41657926 None:intergenic 45.0%
CTCTGGTTGTTCAACCAGTT+TGG - chr8_4:41658190-41658209 None:intergenic 45.0%
AACAGGGAACTCAATAGGAG+TGG - chr8_4:41658403-41658422 None:intergenic 45.0%
GGAAGCAAACAGAACGATCA+TGG - chr8_4:41658584-41658603 None:intergenic 45.0%
CTTCACTAAACGACAGCACT+TGG - chr8_4:41658605-41658624 None:intergenic 45.0%
GACAAAGCAGAGTTGTCTTG+TGG - chr8_4:41658649-41658668 None:intergenic 45.0%
AATACAATGGCAGCTCCCTA+AGG - chr8_4:41658977-41658996 None:intergenic 45.0%
! GCTGTTGTTTACAGAGCAAG+TGG + chr8_4:41659045-41659064 Msa1326780:intron 45.0%
TGGATAGTAAGTGCCCTCTT+TGG + chr8_4:41659065-41659084 Msa1326780:CDS 45.0%
! CAGAAGCCTTATGGTTTGCA+GGG + chr8_4:41659114-41659133 Msa1326780:CDS 45.0%
! AGAAGCCTTATGGTTTGCAG+GGG + chr8_4:41659115-41659134 Msa1326780:CDS 45.0%
CAAGCGCTTATCACAAAGCA+GGG - chr8_4:41659341-41659360 None:intergenic 45.0%
ACAAGCGCTTATCACAAAGC+AGG - chr8_4:41659342-41659361 None:intergenic 45.0%
! GAGAGCATAGATCTGGTGAA+AGG + chr8_4:41659509-41659528 Msa1326780:intron 45.0%
CACCATTACCAGCAGTTGTT+TGG + chr8_4:41660175-41660194 Msa1326780:CDS 45.0%
AGCCAAACAACTGCTGGTAA+TGG - chr8_4:41660180-41660199 None:intergenic 45.0%
! TACCAGCAGTTGTTTGGCTT+TGG + chr8_4:41660181-41660200 Msa1326780:CDS 45.0%
! CATGATGCACCTAATGGATG+AGG - chr8_4:41660365-41660384 None:intergenic 45.0%
ACCACTTGAGCGATATCTTG+GGG - chr8_4:41660591-41660610 None:intergenic 45.0%
CAACCACTTGAGCGATATCT+TGG - chr8_4:41660593-41660612 None:intergenic 45.0%
ATATCGCTCAAGTGGTTGAG+TGG + chr8_4:41660595-41660614 Msa1326780:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr8_4:41660698-41660717 Msa1326780:intron 45.0%
!!! TAGTTTTTTGGTAGTGGCCG+GGG - chr8_4:41660759-41660778 None:intergenic 45.0%
AGTATGGTTCAAGTGGTAGG+TGG + chr8_4:41660801-41660820 Msa1326780:intron 45.0%
ACTTCATACAGTGAGCCAAG+TGG + chr8_4:41660939-41660958 Msa1326780:CDS 45.0%
AACGATTCTGACCCACAAAG+AGG - chr8_4:41661046-41661065 None:intergenic 45.0%
GAGGAAGTGATATGTTGGAG+TGG - chr8_4:41661321-41661340 None:intergenic 45.0%
AAGGCTCATTATTCCAGCTC+AGG - chr8_4:41661365-41661384 None:intergenic 45.0%
ACACAATACAGGAGGGTTGT+GGG - chr8_4:41661527-41661546 None:intergenic 45.0%
GGCAATTCACACAATACAGG+AGG - chr8_4:41661535-41661554 None:intergenic 45.0%
CCTGTTCGAAAGAGCTAGCT+AGG - chr8_4:41654942-41654961 None:intergenic 50.0%
! CCTAGCTAGCTCTTTCGAAC+AGG + chr8_4:41654939-41654958 Msa1326780:five_prime_UTR 50.0%
!! ATGCAGCTAGCTGGTTTGAG+TGG - chr8_4:41655632-41655651 None:intergenic 50.0%
GTGGACTCTCTTGGGAACTT+GGG + chr8_4:41655759-41655778 Msa1326780:intron 50.0%
TGGACTCTCTTGGGAACTTG+GGG + chr8_4:41655760-41655779 Msa1326780:intron 50.0%
! GTGAGACACGAACCAGGTTT+TGG + chr8_4:41656467-41656486 Msa1326780:intron 50.0%
CACAGAGGGTCTAAGTGAAG+AGG - chr8_4:41657277-41657296 None:intergenic 50.0%
ATAGCAAAGCGTGGCTGTTG+CGG - chr8_4:41657566-41657585 None:intergenic 50.0%
! TCTCTGGGTGAAAAGTGCGA+TGG + chr8_4:41657705-41657724 Msa1326780:CDS 50.0%
! TGGGTGAAAAGTGCGATGGA+TGG + chr8_4:41657709-41657728 Msa1326780:CDS 50.0%
GAAGCCAAGCTAACATGGAG+TGG - chr8_4:41657902-41657921 None:intergenic 50.0%
GGCATGATGCAGAAGCCTTA+TGG + chr8_4:41659105-41659124 Msa1326780:CDS 50.0%
! GCAGAAGCCTTATGGTTTGC+AGG + chr8_4:41659113-41659132 Msa1326780:CDS 50.0%
! GAAGCCTTATGGTTTGCAGG+GGG + chr8_4:41659116-41659135 Msa1326780:CDS 50.0%
! AAGCCTTATGGTTTGCAGGG+GGG + chr8_4:41659117-41659136 Msa1326780:CDS 50.0%
GGGTCAGATTTCACGGTTGA+AGG - chr8_4:41659200-41659219 None:intergenic 50.0%
TCAACCGTGAAATCTGACCC+TGG + chr8_4:41659200-41659219 Msa1326780:CDS 50.0%
CAACCGTGAAATCTGACCCT+GGG + chr8_4:41659201-41659220 Msa1326780:CDS 50.0%
CATCCCAGGGTCAGATTTCA+CGG - chr8_4:41659207-41659226 None:intergenic 50.0%
AATGTGAAGACGGCATCCCA+GGG - chr8_4:41659220-41659239 None:intergenic 50.0%
TGCCAAAGCCAAACAACTGC+TGG - chr8_4:41660186-41660205 None:intergenic 50.0%
! GAGAGTAAGGTATCACGCCA+AGG - chr8_4:41660280-41660299 None:intergenic 50.0%
TCCCCAAGATATCGCTCAAG+TGG + chr8_4:41660587-41660606 Msa1326780:intron 50.0%
GGTTGAGTGGTGACATCCAA+AGG + chr8_4:41660608-41660627 Msa1326780:intron 50.0%
! GAAGTTTTTGTGACACCCGC+AGG - chr8_4:41660924-41660943 None:intergenic 50.0%
ACAGTGAGCCAAGTGGTTGT+TGG + chr8_4:41660946-41660965 Msa1326780:CDS 50.0%
CAACAGCTCCAACAACCACT+TGG - chr8_4:41660957-41660976 None:intergenic 50.0%
AGTGGTTGTTGGAGCTGTTG+TGG + chr8_4:41660957-41660976 Msa1326780:CDS 50.0%
GTGGTTGTTGGAGCTGTTGT+GGG + chr8_4:41660958-41660977 Msa1326780:CDS 50.0%
TGGTTGTTGGAGCTGTTGTG+GGG + chr8_4:41660959-41660978 Msa1326780:CDS 50.0%
GGGTCTGCAGTACTTTGCTT+AGG + chr8_4:41661075-41661094 Msa1326780:CDS 50.0%
CACACAATACAGGAGGGTTG+TGG - chr8_4:41661528-41661547 None:intergenic 50.0%
TGGTACGAGTCTGGTGCATG+TGG - chr8_4:41655388-41655407 None:intergenic 55.0%
CTTGGCTGTTGGTACGAGTC+TGG - chr8_4:41655397-41655416 None:intergenic 55.0%
! CAGTTCGGCTGGCAAGTTGA+GGG - chr8_4:41655549-41655568 None:intergenic 55.0%
! GGTGGACTCTCTTGGGAACT+TGG + chr8_4:41655758-41655777 Msa1326780:intron 55.0%
GGACTCTCTTGGGAACTTGG+GGG + chr8_4:41655761-41655780 Msa1326780:intron 55.0%
CAATGGCAGCTCCCTAAGGT+TGG - chr8_4:41658973-41658992 None:intergenic 55.0%
AGACCCCCCTGCAAACCATA+AGG - chr8_4:41659123-41659142 None:intergenic 55.0%
GAATGTGAAGACGGCATCCC+AGG - chr8_4:41659221-41659240 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_4:41660696-41660715 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_4:41660693-41660712 Msa1326780:intron 55.0%
GGTTCAAGTGGTAGGTGGTG+TGG + chr8_4:41660806-41660825 Msa1326780:intron 55.0%
TCAAGTGGTAGGTGGTGTGG+CGG + chr8_4:41660809-41660828 Msa1326780:intron 55.0%
GCAGTTCGGCTGGCAAGTTG+AGG - chr8_4:41655550-41655569 None:intergenic 60.0%
TCCTATGCAGGCAGTTCGGC+TGG - chr8_4:41655560-41655579 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr8_4:41660739-41660758 Msa1326780:intron 60.0%
GCCAGCCGAACTGCCTGCAT+AGG + chr8_4:41655556-41655575 Msa1326780:intron 65.0%
GCGTGGCTGTTGCGGTCATG+TGG - chr8_4:41657558-41657577 None:intergenic 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr8_4:41660747-41660766 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 41654823 41661885 41654823 ID=Msa1326780;Name=Msa1326780
chr8_4 mRNA 41654823 41661885 41654823 ID=Msa1326780-mRNA-1;Parent=Msa1326780;Name=Msa1326780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=159|1|1|1|0.6|0.5|6|452|283
chr8_4 exon 41654823 41654960 41654823 ID=Msa1326780-mRNA-1:exon:12181;Parent=Msa1326780-mRNA-1
chr8_4 exon 41657520 41657870 41657520 ID=Msa1326780-mRNA-1:exon:12182;Parent=Msa1326780-mRNA-1
chr8_4 exon 41659059 41659281 41659059 ID=Msa1326780-mRNA-1:exon:12183;Parent=Msa1326780-mRNA-1
chr8_4 exon 41660147 41660220 41660147 ID=Msa1326780-mRNA-1:exon:12184;Parent=Msa1326780-mRNA-1
chr8_4 exon 41660916 41661375 41660916 ID=Msa1326780-mRNA-1:exon:12185;Parent=Msa1326780-mRNA-1
chr8_4 exon 41661669 41661885 41661669 ID=Msa1326780-mRNA-1:exon:12186;Parent=Msa1326780-mRNA-1
chr8_4 five_prime_UTR 41654823 41654960 41654823 ID=Msa1326780-mRNA-1:five_prime_utr;Parent=Msa1326780-mRNA-1
chr8_4 five_prime_UTR 41657520 41657540 41657520 ID=Msa1326780-mRNA-1:five_prime_utr;Parent=Msa1326780-mRNA-1
chr8_4 CDS 41657541 41657870 41657541 ID=Msa1326780-mRNA-1:cds;Parent=Msa1326780-mRNA-1
chr8_4 CDS 41659059 41659281 41659059 ID=Msa1326780-mRNA-1:cds;Parent=Msa1326780-mRNA-1
chr8_4 CDS 41660147 41660220 41660147 ID=Msa1326780-mRNA-1:cds;Parent=Msa1326780-mRNA-1
chr8_4 CDS 41660916 41661140 41660916 ID=Msa1326780-mRNA-1:cds;Parent=Msa1326780-mRNA-1
chr8_4 three_prime_UTR 41661141 41661375 41661141 ID=Msa1326780-mRNA-1:three_prime_utr;Parent=Msa1326780-mRNA-1
chr8_4 three_prime_UTR 41661669 41661885 41661669 ID=Msa1326780-mRNA-1:three_prime_utr;Parent=Msa1326780-mRNA-1
Gene Sequence

>Msa1326780

ATGCTGCAATCTTTCCACATGACCGCAACAGCCACGCTTTGCTATAATCCATCTAACAATTTTTTGAGGACAAATCAGCCTAAACAAAGATACTTGAAAAACAATTCATTTTCTCCTAGTTTATCTGCTTCAAGATCATTCACTTGTGGGTTTGTTCCTTTCAATCTCTGGGTGAAAAGTGCGATGGATGGATTTGTAAGAACTGCTCAGAGAGATGGAAAGAGTGATGGACATATTGAAGTGCTTGAACAAGAAGCTTTCGTTGATAGGTCATCTGAGTCTGAGCCAAAGTTTTTGTTCCAGGACGTGGAATCAACTCTTAATCGACTGAGCAAGTGGATAGTAAGTGCCCTCTTTGGTGTTTTTGTTATTTGGAGGCATGATGCAGAAGCCTTATGGTTTGCAGGGGGGTCTGTTTTAAATGCAATGCTTTCTGTTTTACTCAAACAAATACTTAATCAGGAACGACCTTCAACCGTGAAATCTGACCCTGGGATGCCGTCTTCACATTCTCAATCCATCTTCTTTGCGGTCATGTTTACTATCTTGTCAAGTGTTGAATTGTTAAGTATCAATGCACTCACCATTACCAGCAGTTGTTTGGCTTTGGCATTTGGTTCTTATTTTTCATACCTGCGGGTGTCACAAAAACTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGTTGTGGGGTCAACTTTCTCTATCTTGTGGTATTGGTTATGGAATGCATTTGTGCTAGATGCTTTTTTATCCTCTTTGTGGGTCAGAATCGTTGTTATTTTGGGGTCTGCAGTACTTTGCTTAGGTTTTCTTTTACATGTGGTTCGCAATTGGCTTAAAGACGAATGA

Protein sequence

>Msa1326780

MLQSFHMTATATLCYNPSNNFLRTNQPKQRYLKNNSFSPSLSASRSFTCGFVPFNLWVKSAMDGFVRTAQRDGKSDGHIEVLEQEAFVDRSSESEPKFLFQDVESTLNRLSKWIVSALFGVFVIWRHDAEALWFAGGSVLNAMLSVLLKQILNQERPSTVKSDPGMPSSHSQSIFFAVMFTILSSVELLSINALTITSSCLALAFGSYFSYLRVSQKLHTVSQVVVGAVVGSTFSILWYWLWNAFVLDAFLSSLWVRIVVILGSAVLCLGFLLHVVRNWLKDE*