AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075990 MtrunA17_Chr1g0170671 90.566 212 17 1 1 209 1 212 2.33e-143 398
Msa0075990 MtrunA17_Chr5g0403911 39.375 160 86 3 56 205 26 184 2.73e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075990 AT5G51110.2 68.605 172 53 1 39 209 22 193 6.06e-87 255
Msa0075990 AT5G51110.1 64.021 189 66 2 23 209 32 220 1.98e-85 252
Msa0075990 AT1G29810.2 38.211 123 75 1 85 206 23 145 2.20e-28 104
Msa0075990 AT1G29810.1 38.655 119 72 1 89 206 66 184 5.38e-28 104

Find 80 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACAAAATACTTTA+TGG 0.114079 1_2:+51759535 None:intergenic
AACGATTTCTTAGGGGATTT+TGG 0.153548 1_2:-51762429 Msa0075990:CDS
GTTGCTTGGTGTTTGTTTAT+TGG 0.220068 1_2:+51762632 None:intergenic
AGAGAGAGAGCAGAGATATT+TGG 0.222584 1_2:+51762318 None:intergenic
CAGTTTGGAGAGAAAGTTAT+AGG 0.263947 1_2:-51762372 Msa0075990:CDS
TTGTATTATTTCTGTGAAAA+TGG 0.266907 1_2:-51759309 Msa0075990:three_prime_UTR
GTGTGGATTGTGAAGTTTAA+TGG 0.269327 1_2:+51762658 None:intergenic
TTGCTTGGTGTTTGTTTATT+GGG 0.271612 1_2:+51762633 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1_2:+51760324 None:intergenic
GAGAGAGAGCAGAGATATTT+GGG 0.302607 1_2:+51762319 None:intergenic
TGCTCTCTCTCTTTCTCAAC+AGG 0.340019 1_2:-51762307 Msa0075990:CDS
AGTTCTGCTCTGACTTGATT+TGG 0.343959 1_2:+51760303 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1_2:+51760323 None:intergenic
AGGGTTGAGTTTGGTGGTGT+TGG 0.350306 1_2:+51762509 None:intergenic
ACTTCTTCCTTTGTGTTGCT+TGG 0.352685 1_2:+51762618 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.360538 1_2:+51762325 None:intergenic
GGGTTGAGTTTGGTGGTGTT+GGG 0.361314 1_2:+51762510 None:intergenic
GGGGACTGTAAAGGTGAAAT+GGG 0.394511 1_2:+51762276 None:intergenic
GTTGTGTTGTTTGTGTGGAT+TGG 0.396600 1_2:+51762694 None:intergenic
ATCAAGTCAGAGCAGAACTA+TGG 0.396655 1_2:-51760299 Msa0075990:CDS
ATTGAATGAAGGGTTGAGTT+TGG 0.402466 1_2:+51762500 None:intergenic
CATTATACTTAACAGACTTC+AGG 0.426078 1_2:+51759425 None:intergenic
GCTGAGTTGGAAAGTCAGTT+TGG 0.429565 1_2:-51762387 Msa0075990:CDS
GTAGTGTTTATTAAAATCAA+TGG 0.439509 1_2:-51762580 Msa0075990:exon
CATCAAATAACACAAATTAG+TGG 0.443216 1_2:+51759492 None:intergenic
AACTGACTTTCCAACTCAGC+TGG 0.450920 1_2:+51762390 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.454566 1_2:+51760316 None:intergenic
TGTTCCAAGGAAAAGAGCTT+GGG 0.455439 1_2:-51759576 Msa0075990:CDS
ATTGTGAAGTTTAATGGAAT+GGG 0.458953 1_2:+51762664 None:intergenic
CTGTTAAGTATAATGATTCT+CGG 0.459163 1_2:-51759417 Msa0075990:three_prime_UTR
AGTGTTGACATGTATATAAA+TGG 0.460697 1_2:+51759370 None:intergenic
TTTCAGAACCGTACTCCAAA+CGG 0.461066 1_2:-51762477 Msa0075990:CDS
TTCAGAACCGTACTCCAAAC+GGG 0.462057 1_2:-51762476 Msa0075990:CDS
AAAATACTTTATGGAGCTCA+TGG 0.462531 1_2:+51759544 None:intergenic
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1_2:+51762462 None:intergenic
ATGTTACCTTTCTTATAAGC+TGG 0.467127 1_2:+51762232 None:intergenic
GGGACTGTAAAGGTGAAATG+GGG 0.478411 1_2:+51762277 None:intergenic
TGTGGATTGGATTTGCTTGG+TGG 0.483861 1_2:+51762707 None:intergenic
TTGTGTGGATTGGATTTGCT+TGG 0.489697 1_2:+51762704 None:intergenic
TTGTTCCAAGGAAAAGAGCT+TGG 0.495177 1_2:-51759577 Msa0075990:CDS
CGGTTCTGAAAATTGAATGA+AGG 0.495691 1_2:+51762489 None:intergenic
GAGAGAACCCGTTTGGAGTA+CGG 0.497420 1_2:+51762469 None:intergenic
GTAATGTTGTGTTGTTTGTG+TGG 0.497700 1_2:+51762689 None:intergenic
TACTTAAACTTCGATGCTTG+TGG 0.499142 1_2:-51760422 Msa0075990:CDS
CTTTCCAACTCAGCTGGGAA+AGG 0.499229 1_2:+51762396 None:intergenic
TGCTAACCAGCTTATAAGAA+AGG 0.502324 1_2:-51762238 Msa0075990:intron
TTGGGATTTATCTGTAACAC+AGG 0.504575 1_2:+51762528 None:intergenic
GGTTAGCATCATCTTGAGAA+AGG 0.509678 1_2:+51762253 None:intergenic
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1_2:-51762400 Msa0075990:CDS
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1_2:+51762397 None:intergenic
GTTAGCATCATCTTGAGAAA+GGG 0.522512 1_2:+51762254 None:intergenic
GATTGTGAAGTTTAATGGAA+TGG 0.532775 1_2:+51762663 None:intergenic
TGTTTGTTTATTGGGTTGTG+TGG 0.538375 1_2:+51762641 None:intergenic
GGTTCTGAAAATTGAATGAA+GGG 0.540341 1_2:+51762490 None:intergenic
GAAGGATAATAATACAAGCT+TGG 0.542503 1_2:+51762551 None:intergenic
TGGTGGTCAATAATAGCCTC+TGG 0.543050 1_2:+51762724 None:intergenic
TGGAGACTTGTGAATGATGA+AGG 0.574412 1_2:-51760447 Msa0075990:CDS
GAATGAAGGGTTGAGTTTGG+TGG 0.578352 1_2:+51762503 None:intergenic
TCTACGGTTGTAGAGACTGC+AGG 0.582828 1_2:-51760354 Msa0075990:CDS
TTGACATGTATATAAATGGC+TGG 0.583644 1_2:+51759374 None:intergenic
ACTCATTAACAGAATCTCTA+CGG 0.587267 1_2:-51760370 Msa0075990:CDS
ACTGACTTTCCAACTCAGCT+GGG 0.590933 1_2:+51762391 None:intergenic
TTGTATGTTAGAGGAAGTGT+TGG 0.608149 1_2:+51759268 None:intergenic
GTTGTTCTATGTGGATATTG+GGG 0.611420 1_2:+51760325 None:intergenic
GGACTGTAAAGGTGAAATGG+GGG 0.615160 1_2:+51762278 None:intergenic
AAACATCAGATCTTGTTCCA+AGG 0.615491 1_2:-51759589 Msa0075990:CDS
AGCATCATCTTGAGAAAGGG+GGG 0.631020 1_2:+51762257 None:intergenic
TTAGCATCATCTTGAGAAAG+GGG 0.631573 1_2:+51762255 None:intergenic
ATTTATCTGTAACACAGGGA+AGG 0.634474 1_2:+51762533 None:intergenic
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1_2:-51762461 Msa0075990:CDS
ACAAACACCAAGCAACACAA+AGG 0.641060 1_2:-51762625 Msa0075990:five_prime_UTR
CATGTCAACACTGCTACATG+AGG 0.648038 1_2:-51759359 Msa0075990:three_prime_UTR
TAGCATCATCTTGAGAAAGG+GGG 0.654155 1_2:+51762256 None:intergenic
GAACTATGGACAACATCCAT+CGG 0.659072 1_2:-51760285 Msa0075990:intron
CACCACACTATTACCACCAG+AGG 0.677937 1_2:-51762740 Msa0075990:five_prime_UTR
CTCTGGTGGTAATAGTGTGG+TGG 0.682204 1_2:+51762741 None:intergenic
AGCCTCTGGTGGTAATAGTG+TGG 0.702263 1_2:+51762738 None:intergenic
TGGGATTTATCTGTAACACA+GGG 0.702359 1_2:+51762529 None:intergenic
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1_2:+51762447 None:intergenic
TGGTCAATAATAGCCTCTGG+TGG 0.715405 1_2:+51762727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGTAATAATTTGAAAAA+TGG - chr1_2:51759866-51759885 Msa0075990:intron 15.0%
!!! TCATAATCAAATTAACATTT+TGG + chr1_2:51760620-51760639 None:intergenic 15.0%
!! ATAAAACATCTAAATAGTTT+AGG + chr1_2:51761320-51761339 None:intergenic 15.0%
!!! TATAAAAAAAGTGTCTTTTA+AGG + chr1_2:51761957-51761976 None:intergenic 15.0%
!! ATTCATAACAAAATACTTTA+TGG + chr1_2:51762486-51762505 None:intergenic 15.0%
!! GTAGTGTTTATTAAAATCAA+TGG - chr1_2:51759438-51759457 Msa0075990:three_prime_UTR 20.0%
!! TTTATAACTGTCTAAAAAAG+TGG + chr1_2:51759954-51759973 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + chr1_2:51760122-51760141 None:intergenic 20.0%
!! TTTAAATGATGCATAAAATC+TGG - chr1_2:51760797-51760816 Msa0075990:intron 20.0%
!!! TATTTTCCAAATGAAAATAC+AGG + chr1_2:51761050-51761069 None:intergenic 20.0%
!!! TTCATTTTTTGTAGAGTTTT+TGG - chr1_2:51761413-51761432 Msa0075990:intron 20.0%
!!! AAATTGAGAGATTTTAAATG+CGG - chr1_2:51761619-51761638 Msa0075990:intron 20.0%
!!! AAAGACATTTTATAACTCAA+AGG - chr1_2:51762180-51762199 Msa0075990:intron 20.0%
!!! AAGACATTTTATAACTCAAA+GGG - chr1_2:51762181-51762200 Msa0075990:intron 20.0%
!!! TTGTATTATTTCTGTGAAAA+TGG - chr1_2:51762709-51762728 Msa0075990:five_prime_UTR 20.0%
! ATTGTGAAGTTTAATGGAAT+GGG + chr1_2:51759357-51759376 None:intergenic 25.0%
!! TCTTTTAACAACGATTTCTT+AGG - chr1_2:51759580-51759599 Msa0075990:CDS 25.0%
!! CTTTTAACAACGATTTCTTA+GGG - chr1_2:51759581-51759600 Msa0075990:CDS 25.0%
!! TTTTAACAACGATTTCTTAG+GGG - chr1_2:51759582-51759601 Msa0075990:CDS 25.0%
! TGAACATGTGTTTATAAATG+GGG + chr1_2:51760121-51760140 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG + chr1_2:51760123-51760142 None:intergenic 25.0%
! AGTGTTAAAGAATCTCATAT+CGG + chr1_2:51760157-51760176 None:intergenic 25.0%
! ATATATAAGCTATGATGACT+AGG - chr1_2:51760270-51760289 Msa0075990:intron 25.0%
!! ACCACCAAACTAATATTTTT+GGG + chr1_2:51760297-51760316 None:intergenic 25.0%
!! TACCACCAAACTAATATTTT+TGG + chr1_2:51760298-51760317 None:intergenic 25.0%
!!! TTTGTGGTTAATTTGTTACA+AGG + chr1_2:51760395-51760414 None:intergenic 25.0%
!! CTTTTATAGACAAATGTTTG+TGG + chr1_2:51760411-51760430 None:intergenic 25.0%
! AGAAAAACGTTAAAAGACAT+AGG - chr1_2:51760429-51760448 Msa0075990:CDS 25.0%
! TTGGTAAAAGTTAAGATGAA+AGG + chr1_2:51760537-51760556 None:intergenic 25.0%
!! ATCTTAACTTTTACCAAACA+AGG - chr1_2:51760540-51760559 Msa0075990:intron 25.0%
!!! TCAAATTAACATTTTGGTCA+AGG + chr1_2:51760614-51760633 None:intergenic 25.0%
! TGTACATATACTCTATTGAA+TGG + chr1_2:51760705-51760724 None:intergenic 25.0%
!! TAGTTAAGTGTGTCAATTTT+TGG - chr1_2:51760918-51760937 Msa0075990:intron 25.0%
! TTTAAGAAGCAAGTGTAAAA+TGG + chr1_2:51761519-51761538 None:intergenic 25.0%
!! GTTTTTCTTTTCATTTATGC+AGG - chr1_2:51761540-51761559 Msa0075990:intron 25.0%
!! TTTTCATTTATGCAGGTTTT+GGG - chr1_2:51761547-51761566 Msa0075990:intron 25.0%
! AAGGAAAAAGGAATGATAAA+GGG + chr1_2:51762212-51762231 None:intergenic 25.0%
! CATCAAATAACACAAATTAG+TGG + chr1_2:51762529-51762548 None:intergenic 25.0%
! CTGTTAAGTATAATGATTCT+CGG - chr1_2:51762601-51762620 Msa0075990:five_prime_UTR 25.0%
!!! AGTGTTGACATGTATATAAA+TGG + chr1_2:51762651-51762670 None:intergenic 25.0%
GATTGTGAAGTTTAATGGAA+TGG + chr1_2:51759358-51759377 None:intergenic 30.0%
!! TTGCTTGGTGTTTGTTTATT+GGG + chr1_2:51759388-51759407 None:intergenic 30.0%
GAAGGATAATAATACAAGCT+TGG + chr1_2:51759470-51759489 None:intergenic 30.0%
!! GGTTCTGAAAATTGAATGAA+GGG + chr1_2:51759531-51759550 None:intergenic 30.0%
ATGTTACCTTTCTTATAAGC+TGG + chr1_2:51759789-51759808 None:intergenic 30.0%
TCTCTAAGCAACTATATACA+TGG - chr1_2:51759815-51759834 Msa0075990:intron 30.0%
CGTGTTAGTGTTAGAATATT+TGG - chr1_2:51759910-51759929 Msa0075990:intron 30.0%
!!! TTACTCTGTTTTAGAAATCG+TGG - chr1_2:51760047-51760066 Msa0075990:intron 30.0%
GAACATGTGTTTATAAATGG+GGG + chr1_2:51760120-51760139 None:intergenic 30.0%
AACTATATTACCTTCCAACA+TGG + chr1_2:51760195-51760214 None:intergenic 30.0%
AGGTCCCAAAAATATTAGTT+TGG - chr1_2:51760290-51760309 Msa0075990:CDS 30.0%
! TCCCAAAAATATTAGTTTGG+TGG - chr1_2:51760293-51760312 Msa0075990:CDS 30.0%
ACTCACAGATTACTTACAAA+GGG + chr1_2:51760478-51760497 None:intergenic 30.0%
TACTCACAGATTACTTACAA+AGG + chr1_2:51760479-51760498 None:intergenic 30.0%
! AAGCTTACATTTTCCTTGTT+TGG + chr1_2:51760556-51760575 None:intergenic 30.0%
!!! GATCATTTTAACTCAAGTTC+AGG + chr1_2:51760592-51760611 None:intergenic 30.0%
ATATGAACTATGAACCACTA+AGG - chr1_2:51760751-51760770 Msa0075990:intron 30.0%
TATGAACTATGAACCACTAA+GGG - chr1_2:51760752-51760771 Msa0075990:intron 30.0%
! GCACATTTGATTATCAGTTT+TGG - chr1_2:51760949-51760968 Msa0075990:intron 30.0%
ATTGCAAAGATATTGCTTTC+AGG - chr1_2:51761007-51761026 Msa0075990:intron 30.0%
! GTTGAACCTGTATTTTCATT+TGG - chr1_2:51761041-51761060 Msa0075990:intron 30.0%
AACATGATATACAAGTGTTC+AGG - chr1_2:51761069-51761088 Msa0075990:intron 30.0%
! CTTTTCATTTATGCAGGTTT+TGG - chr1_2:51761546-51761565 Msa0075990:intron 30.0%
ACTCATTAACAGAATCTCTA+CGG - chr1_2:51761648-51761667 Msa0075990:intron 30.0%
AAAACTGAGCTAAGAATGAT+AGG + chr1_2:51761795-51761814 None:intergenic 30.0%
TTTCAGTATTACATTAACCG+TGG - chr1_2:51761850-51761869 Msa0075990:intron 30.0%
AACTTGAACTAACGTAATGT+TGG + chr1_2:51762006-51762025 None:intergenic 30.0%
! TTTTTCTGTAACGACGTTAT+TGG + chr1_2:51762161-51762180 None:intergenic 30.0%
GAAGGAAAAAGGAATGATAA+AGG + chr1_2:51762213-51762232 None:intergenic 30.0%
ATGATTTCCATTAGAGAAGA+AGG + chr1_2:51762231-51762250 None:intergenic 30.0%
!!! CTTATTTTTAGGAACTAGAG+CGG + chr1_2:51762305-51762324 None:intergenic 30.0%
!! CAAGACGAGAACTTATTTTT+AGG + chr1_2:51762316-51762335 None:intergenic 30.0%
TTCAAAGCATGACATTTGAA+AGG - chr1_2:51762339-51762358 Msa0075990:CDS 30.0%
TCAAAGCATGACATTTGAAA+GGG - chr1_2:51762340-51762359 Msa0075990:CDS 30.0%
AAAATACTTTATGGAGCTCA+TGG + chr1_2:51762477-51762496 None:intergenic 30.0%
CATTATACTTAACAGACTTC+AGG + chr1_2:51762596-51762615 None:intergenic 30.0%
TTGACATGTATATAAATGGC+TGG + chr1_2:51762647-51762666 None:intergenic 30.0%
!! GTAATGTTGTGTTGTTTGTG+TGG + chr1_2:51759332-51759351 None:intergenic 35.0%
! GTGTGGATTGTGAAGTTTAA+TGG + chr1_2:51759363-51759382 None:intergenic 35.0%
! TGTTTGTTTATTGGGTTGTG+TGG + chr1_2:51759380-51759399 None:intergenic 35.0%
!! GTTGCTTGGTGTTTGTTTAT+TGG + chr1_2:51759389-51759408 None:intergenic 35.0%
ATTTATCTGTAACACAGGGA+AGG + chr1_2:51759488-51759507 None:intergenic 35.0%
TGGGATTTATCTGTAACACA+GGG + chr1_2:51759492-51759511 None:intergenic 35.0%
TTGGGATTTATCTGTAACAC+AGG + chr1_2:51759493-51759512 None:intergenic 35.0%
ATTGAATGAAGGGTTGAGTT+TGG + chr1_2:51759521-51759540 None:intergenic 35.0%
!! CGGTTCTGAAAATTGAATGA+AGG + chr1_2:51759532-51759551 None:intergenic 35.0%
! AACGATTTCTTAGGGGATTT+TGG - chr1_2:51759589-51759608 Msa0075990:CDS 35.0%
CAGTTTGGAGAGAAAGTTAT+AGG - chr1_2:51759646-51759665 Msa0075990:intron 35.0%
TTAGCATCATCTTGAGAAAG+GGG + chr1_2:51759766-51759785 None:intergenic 35.0%
GTTAGCATCATCTTGAGAAA+GGG + chr1_2:51759767-51759786 None:intergenic 35.0%
TGCTAACCAGCTTATAAGAA+AGG - chr1_2:51759780-51759799 Msa0075990:intron 35.0%
TATTCTAACACTAACACGTG+TGG + chr1_2:51759908-51759927 None:intergenic 35.0%
TTGTTACGAAATGAGAGATG+AGG - chr1_2:51760003-51760022 Msa0075990:intron 35.0%
!!! TCTGTTTTAGAAATCGTGGT+CGG - chr1_2:51760051-51760070 Msa0075990:intron 35.0%
CTACCACAACCCAATAAAAT+GGG - chr1_2:51760076-51760095 Msa0075990:intron 35.0%
ATCTCATATCGGACAAAAGA+TGG + chr1_2:51760146-51760165 None:intergenic 35.0%
CAACATGGAGAATGTAATCT+CGG + chr1_2:51760180-51760199 None:intergenic 35.0%
ATTACATTCTCCATGTTGGA+AGG - chr1_2:51760182-51760201 Msa0075990:intron 35.0%
! CAAGTAAGGATTAAAGCACT+TGG - chr1_2:51760244-51760263 Msa0075990:intron 35.0%
! ATTAGTTTGGTGGTATGAGT+TGG - chr1_2:51760303-51760322 Msa0075990:CDS 35.0%
ACATAGGATTAATTCTCGCT+GGG - chr1_2:51760445-51760464 Msa0075990:CDS 35.0%
CTCACAGATTACTTACAAAG+GGG + chr1_2:51760477-51760496 None:intergenic 35.0%
ATGGCATAGCATATACATCA+TGG + chr1_2:51760686-51760705 None:intergenic 35.0%
GATAAATTCAAAGCCCTTAG+TGG + chr1_2:51760768-51760787 None:intergenic 35.0%
AGAGCAGAGTAGCATAAAAA+TGG + chr1_2:51760859-51760878 None:intergenic 35.0%
GATAATCAAATGTGCATCTG+AGG + chr1_2:51760944-51760963 None:intergenic 35.0%
TGATACAGTCTGTTTGATGA+AGG - chr1_2:51761110-51761129 Msa0075990:intron 35.0%
CAGGGTGAAAATGTGTTATA+TGG + chr1_2:51761480-51761499 None:intergenic 35.0%
GGACTTCTATGAAATTTGCA+GGG + chr1_2:51761498-51761517 None:intergenic 35.0%
TGGACTTCTATGAAATTTGC+AGG + chr1_2:51761499-51761518 None:intergenic 35.0%
TACTTAAACTTCGATGCTTG+TGG - chr1_2:51761596-51761615 Msa0075990:intron 35.0%
GTTGTTCTATGTGGATATTG+GGG + chr1_2:51761696-51761715 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG + chr1_2:51761697-51761716 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG + chr1_2:51761698-51761717 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG + chr1_2:51761705-51761724 None:intergenic 35.0%
!! ATAAGAAGGGTACTGGTTTA+AGG + chr1_2:51761763-51761782 None:intergenic 35.0%
!!! GGTGATACAAGCGTTTTTTT+AGG + chr1_2:51761985-51762004 None:intergenic 35.0%
AAACTTGAGGCTTTGCTTAA+GGG + chr1_2:51762044-51762063 None:intergenic 35.0%
! TATTGGTACAAAGTATCCAC+TGG + chr1_2:51762144-51762163 None:intergenic 35.0%
CCATTAGAGAAGAAGGAAAA+AGG + chr1_2:51762224-51762243 None:intergenic 35.0%
! CCTTTTTCCTTCTTCTCTAA+TGG - chr1_2:51762221-51762240 Msa0075990:intron 35.0%
! GAAAGGGTTCAATATTTTGC+AGG - chr1_2:51762356-51762375 Msa0075990:CDS 35.0%
AAACATCAGATCTTGTTCCA+AGG - chr1_2:51762429-51762448 Msa0075990:CDS 35.0%
!! TTGTGTGGATTGGATTTGCT+TGG + chr1_2:51759317-51759336 None:intergenic 40.0%
!! GTTGTGTTGTTTGTGTGGAT+TGG + chr1_2:51759327-51759346 None:intergenic 40.0%
ACAAACACCAAGCAACACAA+AGG - chr1_2:51759393-51759412 Msa0075990:three_prime_UTR 40.0%
! ACTTCTTCCTTTGTGTTGCT+TGG + chr1_2:51759403-51759422 None:intergenic 40.0%
TTTCAGAACCGTACTCCAAA+CGG - chr1_2:51759541-51759560 Msa0075990:three_prime_UTR 40.0%
TCGTTGTTAAAAGACCGAAG+TGG + chr1_2:51759574-51759593 None:intergenic 40.0%
! GAGCAGAGATATTTGGGATA+AGG + chr1_2:51759696-51759715 None:intergenic 40.0%
GAGAGAGAGCAGAGATATTT+GGG + chr1_2:51759702-51759721 None:intergenic 40.0%
AGAGAGAGAGCAGAGATATT+TGG + chr1_2:51759703-51759722 None:intergenic 40.0%
TAGCATCATCTTGAGAAAGG+GGG + chr1_2:51759765-51759784 None:intergenic 40.0%
GGTTAGCATCATCTTGAGAA+AGG + chr1_2:51759768-51759787 None:intergenic 40.0%
GAGATGAGGATGTTTGAATC+AGG - chr1_2:51760017-51760036 Msa0075990:intron 40.0%
!!! CTGTTTTAGAAATCGTGGTC+GGG - chr1_2:51760052-51760071 Msa0075990:intron 40.0%
!! CCATTTTATTGGGTTGTGGT+AGG + chr1_2:51760078-51760097 None:intergenic 40.0%
CCTACCACAACCCAATAAAA+TGG - chr1_2:51760075-51760094 Msa0075990:intron 40.0%
!! AGACCCATTTTATTGGGTTG+TGG + chr1_2:51760082-51760101 None:intergenic 40.0%
! CCTGACAGACCCATTTTATT+GGG + chr1_2:51760088-51760107 None:intergenic 40.0%
! ACCTGACAGACCCATTTTAT+TGG + chr1_2:51760089-51760108 None:intergenic 40.0%
CGAGATTACATTCTCCATGT+TGG - chr1_2:51760178-51760197 Msa0075990:intron 40.0%
GTTGTAGCTTAAAACCACCA+AGG - chr1_2:51760212-51760231 Msa0075990:intron 40.0%
TAGCTTAAAACCACCAAGGT+TGG - chr1_2:51760216-51760235 Msa0075990:intron 40.0%
GACATAGGATTAATTCTCGC+TGG - chr1_2:51760444-51760463 Msa0075990:CDS 40.0%
TGAAGAGAAAGAAGACAACG+AGG - chr1_2:51760637-51760656 Msa0075990:intron 40.0%
!!! CATTTATGCAGGTTTTGGGT+TGG - chr1_2:51761551-51761570 Msa0075990:intron 40.0%
TGGAGACTTGTGAATGATGA+AGG - chr1_2:51761571-51761590 Msa0075990:intron 40.0%
! AGTTCTGCTCTGACTTGATT+TGG + chr1_2:51761718-51761737 None:intergenic 40.0%
ATCAAGTCAGAGCAGAACTA+TGG - chr1_2:51761719-51761738 Msa0075990:intron 40.0%
GAACTATGGACAACATCCAT+CGG - chr1_2:51761733-51761752 Msa0075990:intron 40.0%
TAGGAGGGAGTAGATAAGAA+GGG + chr1_2:51761776-51761795 None:intergenic 40.0%
ATAGGAGGGAGTAGATAAGA+AGG + chr1_2:51761777-51761796 None:intergenic 40.0%
CTGAGCTAAGAATGATAGGA+GGG + chr1_2:51761791-51761810 None:intergenic 40.0%
ACTGAGCTAAGAATGATAGG+AGG + chr1_2:51761792-51761811 None:intergenic 40.0%
TTACATTAACCGTGGTGAGA+TGG - chr1_2:51761858-51761877 Msa0075990:intron 40.0%
! TTTTCAATGCCATCTCACCA+CGG + chr1_2:51761870-51761889 None:intergenic 40.0%
GAAACTTGAGGCTTTGCTTA+AGG + chr1_2:51762045-51762064 None:intergenic 40.0%
AAAGCCTCAAGTTTCTCTTG+TGG - chr1_2:51762050-51762069 Msa0075990:intron 40.0%
CAATCCACAAGAGAAACTTG+AGG + chr1_2:51762057-51762076 None:intergenic 40.0%
! AAGACCACAACTAGGTCTTT+TGG - chr1_2:51762097-51762116 Msa0075990:intron 40.0%
TCATATAAGCACCACTCAAG+TGG - chr1_2:51762247-51762266 Msa0075990:CDS 40.0%
! AGGGTTCAATATTTTGCAGG+TGG - chr1_2:51762359-51762378 Msa0075990:CDS 40.0%
TTGTTCCAAGGAAAAGAGCT+TGG - chr1_2:51762441-51762460 Msa0075990:CDS 40.0%
TGTTCCAAGGAAAAGAGCTT+GGG - chr1_2:51762442-51762461 Msa0075990:CDS 40.0%
TGGTCAATAATAGCCTCTGG+TGG + chr1_2:51759294-51759313 None:intergenic 45.0%
TGGTGGTCAATAATAGCCTC+TGG + chr1_2:51759297-51759316 None:intergenic 45.0%
!! TGTGGATTGGATTTGCTTGG+TGG + chr1_2:51759314-51759333 None:intergenic 45.0%
GAATGAAGGGTTGAGTTTGG+TGG + chr1_2:51759518-51759537 None:intergenic 45.0%
TTCAGAACCGTACTCCAAAC+GGG - chr1_2:51759542-51759561 Msa0075990:three_prime_UTR 45.0%
TTTCCAACTCAGCTGGGAAA+GGG + chr1_2:51759624-51759643 None:intergenic 45.0%
! ACTGACTTTCCAACTCAGCT+GGG + chr1_2:51759630-51759649 None:intergenic 45.0%
! AACTGACTTTCCAACTCAGC+TGG + chr1_2:51759631-51759650 None:intergenic 45.0%
! GCTGAGTTGGAAAGTCAGTT+TGG - chr1_2:51759631-51759650 Msa0075990:CDS 45.0%
TGCTCTCTCTCTTTCTCAAC+AGG - chr1_2:51759711-51759730 Msa0075990:intron 45.0%
GGACTGTAAAGGTGAAATGG+GGG + chr1_2:51759743-51759762 None:intergenic 45.0%
GGGACTGTAAAGGTGAAATG+GGG + chr1_2:51759744-51759763 None:intergenic 45.0%
GGGGACTGTAAAGGTGAAAT+GGG + chr1_2:51759745-51759764 None:intergenic 45.0%
AGCATCATCTTGAGAAAGGG+GGG + chr1_2:51759764-51759783 None:intergenic 45.0%
CCCAATAAAATGGGTCTGTC+AGG - chr1_2:51760085-51760104 Msa0075990:intron 45.0%
TAAAATGGGTCTGTCAGGTG+AGG - chr1_2:51760090-51760109 Msa0075990:intron 45.0%
CTTACTTGCTCAACCAACCT+TGG + chr1_2:51760232-51760251 None:intergenic 45.0%
! CAAGGTTGGTTGAGCAAGTA+AGG - chr1_2:51760230-51760249 Msa0075990:intron 45.0%
!! AACACCGAAGGAGTGCTATT+AGG - chr1_2:51760326-51760345 Msa0075990:CDS 45.0%
CCTACCTAATAGCACTCCTT+CGG + chr1_2:51760333-51760352 None:intergenic 45.0%
!! AAGGAGTGCTATTAGGTAGG+TGG - chr1_2:51760333-51760352 Msa0075990:CDS 45.0%
AAGGAAGTGACTCCATTCCA+AGG + chr1_2:51760518-51760537 None:intergenic 45.0%
! ACTGGTTTAAGGCTTACCGA+TGG + chr1_2:51761752-51761771 None:intergenic 45.0%
! GGAGTAGATAAGAAGGGTAC+TGG + chr1_2:51761770-51761789 None:intergenic 45.0%
! GTGGTGAGATGGCATTGAAA+AGG - chr1_2:51761869-51761888 Msa0075990:intron 45.0%
TGTGACAGAAGACCACAACT+AGG - chr1_2:51762089-51762108 Msa0075990:intron 45.0%
! ACCACAACTAGGTCTTTTGG+TGG - chr1_2:51762100-51762119 Msa0075990:intron 45.0%
TCCACCAAAAGACCTAGTTG+TGG + chr1_2:51762104-51762123 None:intergenic 45.0%
!! ACAAAGTATCCACTGGCTTG+CGG + chr1_2:51762137-51762156 None:intergenic 45.0%
AGAGCCTATATGTGCCTATG+AGG + chr1_2:51762281-51762300 None:intergenic 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG + chr1_2:51762449-51762468 None:intergenic 45.0%
CATGTCAACACTGCTACATG+AGG - chr1_2:51762659-51762678 Msa0075990:five_prime_UTR 45.0%
!!! TTATTTTATTTTTACTAATA+AGG + chr1_2:51761260-51761279 None:intergenic 5.0%
CTCTGGTGGTAATAGTGTGG+TGG + chr1_2:51759280-51759299 None:intergenic 50.0%
CACCACACTATTACCACCAG+AGG - chr1_2:51759278-51759297 Msa0075990:three_prime_UTR 50.0%
AGCCTCTGGTGGTAATAGTG+TGG + chr1_2:51759283-51759302 None:intergenic 50.0%
!! GGGTTGAGTTTGGTGGTGTT+GGG + chr1_2:51759511-51759530 None:intergenic 50.0%
!! AGGGTTGAGTTTGGTGGTGT+TGG + chr1_2:51759512-51759531 None:intergenic 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG + chr1_2:51759552-51759571 None:intergenic 50.0%
! CAAACGGGTTCTCTCCACTT+CGG - chr1_2:51759557-51759576 Msa0075990:exon 50.0%
CTTTCCAACTCAGCTGGGAA+AGG + chr1_2:51759625-51759644 None:intergenic 50.0%
GGGGGACTGTAAAGGTGAAA+TGG + chr1_2:51759746-51759765 None:intergenic 50.0%
TGAGAAAGGGGGGACTGTAA+AGG + chr1_2:51759754-51759773 None:intergenic 50.0%
ACTTGCTCAACCAACCTTGG+TGG + chr1_2:51760229-51760248 None:intergenic 50.0%
! GGTATGAGTTGGAACACCGA+AGG - chr1_2:51760314-51760333 Msa0075990:CDS 50.0%
!! CCGAAGGAGTGCTATTAGGT+AGG - chr1_2:51760330-51760349 Msa0075990:CDS 50.0%
ACTCTTCTAAGCCGTGACCT+TGG - chr1_2:51760498-51760517 Msa0075990:intron 50.0%
TCTAAGCCGTGACCTTGGAA+TGG - chr1_2:51760503-51760522 Msa0075990:intron 50.0%
GTGACTCCATTCCAAGGTCA+CGG + chr1_2:51760512-51760531 None:intergenic 50.0%
TCTACGGTTGTAGAGACTGC+AGG - chr1_2:51761664-51761683 Msa0075990:intron 50.0%
ATTAGTCATCCGCAAGCCAG+TGG - chr1_2:51762125-51762144 Msa0075990:intron 50.0%
ATAAGCACCACTCAAGTGGC+AGG - chr1_2:51762251-51762270 Msa0075990:CDS 50.0%
TAAGCACCACTCAAGTGGCA+GGG - chr1_2:51762252-51762271 Msa0075990:CDS 50.0%
GCCTCCTCATAGGCACATAT+AGG - chr1_2:51762274-51762293 Msa0075990:CDS 50.0%
GCCTATATGTGCCTATGAGG+AGG + chr1_2:51762278-51762297 None:intergenic 50.0%
CGAAGTGGAGAGAACCCGTT+TGG + chr1_2:51759559-51759578 None:intergenic 55.0%
AGACCCTTTCCCAGCTGAGT+TGG - chr1_2:51759618-51759637 Msa0075990:CDS 55.0%
AAGTGGCAGGGCCTCCTCAT+AGG - chr1_2:51762264-51762283 Msa0075990:CDS 60.0%
! AGGAGGCCCTGCCACTTGAG+TGG + chr1_2:51762261-51762280 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51759276 51762764 51759276 ID=Msa0075990;Name=Msa0075990
chr1_2 mRNA 51759276 51762764 51759276 ID=Msa0075990-mRNA-1;Parent=Msa0075990;Name=Msa0075990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=181|1|1|1|1|1|3|295|209
chr1_2 exon 51759276 51759662 51759276 ID=Msa0075990-mRNA-1:exon:15931;Parent=Msa0075990-mRNA-1
chr1_2 exon 51760286 51760478 51760286 ID=Msa0075990-mRNA-1:exon:15930;Parent=Msa0075990-mRNA-1
chr1_2 exon 51762239 51762764 51762239 ID=Msa0075990-mRNA-1:exon:15929;Parent=Msa0075990-mRNA-1
chr1_2 five_prime_UTR 51762584 51762764 51762584 ID=Msa0075990-mRNA-1:five_prime_utr;Parent=Msa0075990-mRNA-1
chr1_2 CDS 51762239 51762583 51762239 ID=Msa0075990-mRNA-1:cds;Parent=Msa0075990-mRNA-1
chr1_2 CDS 51760286 51760478 51760286 ID=Msa0075990-mRNA-1:cds;Parent=Msa0075990-mRNA-1
chr1_2 CDS 51759571 51759662 51759571 ID=Msa0075990-mRNA-1:cds;Parent=Msa0075990-mRNA-1
chr1_2 three_prime_UTR 51759276 51759570 51759276 ID=Msa0075990-mRNA-1:three_prime_utr;Parent=Msa0075990-mRNA-1
Gene Sequence

>Msa0075990

ATGGCTACAACCAAGCTTGTATTATTATCCTTCCCTGTGTTACAGATAAATCCCAACACCACCAAACTCAACCCTTCATTCAATTTTCAGAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTAGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAGTTTGGAGAGAAAGTTATAGGTAGTTATAACACTGAACACAAAATCCTTATCCCAAATATCTCTGCTCTCTCTCTTTCTCAACAGGAGTGTACCCCCATTTCACCTTTACAGTCCCCCCTTTCTCAAGATGATGCTAACCAGCTTATAAGAAAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGCGGAGTTGAACTCATTAACAGAATCTCTACGGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTCAGAGCAGAACTATGGACAACATCCATCGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAAACATCAGATCTTGTTCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>Msa0075990

MATTKLVLLSFPVLQINPNTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQSPLSQDDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKCGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA*