Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182610 | XP_013443992.2 | 100.000 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 6.93e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182610 | sp|Q9M9M9|NDUAC_ARATH | 78.205 | 156 | 34 | 0 | 1 | 156 | 1 | 156 | 1.88e-92 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1182610 | 0.820152 | 7.975292e-53 | -8.615850e-47 |
| Msa0047980 | Msa1182610 | 0.804699 | 1.906078e-49 | -8.615850e-47 |
| Msa0055150 | Msa1182610 | 0.811739 | 6.022063e-51 | -8.615850e-47 |
| Msa0061970 | Msa1182610 | 0.845366 | 4.246543e-59 | -8.615850e-47 |
| Msa0064350 | Msa1182610 | 0.839132 | 1.902279e-57 | -8.615850e-47 |
| Msa0082280 | Msa1182610 | 0.817657 | 2.943214e-52 | -8.615850e-47 |
| Msa0610390 | Msa1182610 | 0.800202 | 1.610065e-48 | -8.615850e-47 |
| Msa0647490 | Msa1182610 | 0.803455 | 3.457078e-49 | -8.615850e-47 |
| Msa0650920 | Msa1182610 | 0.802962 | 4.372783e-49 | -8.615850e-47 |
| Msa0680240 | Msa1182610 | 0.815836 | 7.537906e-52 | -8.615850e-47 |
| Msa0687630 | Msa1182610 | 0.850671 | 1.460204e-60 | -8.615850e-47 |
| Msa0692840 | Msa1182610 | 0.809171 | 2.158978e-50 | -8.615850e-47 |
| Msa0692940 | Msa1182610 | 0.826142 | 3.190575e-54 | -8.615850e-47 |
| Msa0705000 | Msa1182610 | 0.808935 | 2.424831e-50 | -8.615850e-47 |
| Msa0705040 | Msa1182610 | 0.802096 | 6.595830e-49 | -8.615850e-47 |
| Msa0751480 | Msa1182610 | 0.841210 | 5.455031e-58 | -8.615850e-47 |
| Msa0755170 | Msa1182610 | 0.801272 | 9.739103e-49 | -8.615850e-47 |
| Msa0806920 | Msa1182610 | 0.812450 | 4.212960e-51 | -8.615850e-47 |
| Msa0155430 | Msa1182610 | 0.806938 | 6.450908e-50 | -8.615850e-47 |
| Msa0166750 | Msa1182610 | 0.810342 | 1.208885e-50 | -8.615850e-47 |
| Msa0174770 | Msa1182610 | 0.822322 | 2.520238e-53 | -8.615850e-47 |
| Msa0199690 | Msa1182610 | 0.814731 | 1.326925e-51 | -8.615850e-47 |
| Msa0236270 | Msa1182610 | 0.806896 | 6.582787e-50 | -8.615850e-47 |
| Msa0376690 | Msa1182610 | 0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0394400 | Msa1182610 | 0.821776 | 3.373106e-53 | -8.615850e-47 |
| Msa0414800 | Msa1182610 | 0.805806 | 1.117618e-49 | -8.615850e-47 |
| Msa0416400 | Msa1182610 | 0.821849 | 3.244986e-53 | -8.615850e-47 |
| Msa0458060 | Msa1182610 | 0.807027 | 6.175953e-50 | -8.615850e-47 |
| Msa0471590 | Msa1182610 | 0.818599 | 1.801978e-52 | -8.615850e-47 |
| Msa0280430 | Msa1182610 | 0.810915 | 9.089133e-51 | -8.615850e-47 |
| Msa0291520 | Msa1182610 | 0.816508 | 5.332726e-52 | -8.615850e-47 |
| Msa0304590 | Msa1182610 | 0.812406 | 4.307429e-51 | -8.615850e-47 |
| Msa0304660 | Msa1182610 | 0.807327 | 5.336054e-50 | -8.615850e-47 |
| Msa0322890 | Msa1182610 | 0.815396 | 9.443854e-52 | -8.615850e-47 |
| Msa0331700 | Msa1182610 | 0.805608 | 1.229741e-49 | -8.615850e-47 |
| Msa1126510 | Msa1182610 | 0.810442 | 1.150541e-50 | -8.615850e-47 |
| Msa1126770 | Msa1182610 | 0.839301 | 1.719644e-57 | -8.615850e-47 |
| Msa1166860 | Msa1182610 | 0.812268 | 4.618078e-51 | -8.615850e-47 |
| Msa1182610 | Msa1184370 | 0.846595 | 1.968363e-59 | -8.615850e-47 |
| Msa1182610 | Msa1186800 | 0.816044 | 6.774289e-52 | -8.615850e-47 |
| Msa1182610 | Msa1210810 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa1182610 | Msa1227690 | 0.834601 | 2.728230e-56 | -8.615850e-47 |
| Msa1182610 | Msa1299040 | 0.821467 | 3.975901e-53 | -8.615850e-47 |
| Msa1182610 | Msa1304820 | 0.815076 | 1.112334e-51 | -8.615850e-47 |
| Msa1182610 | Msa1307950 | 0.816642 | 4.977838e-52 | -8.615850e-47 |
| Msa1182610 | Msa1345450 | 0.805809 | 1.115575e-49 | -8.615850e-47 |
| Msa1182610 | Msa1365150 | 0.805296 | 1.429751e-49 | -8.615850e-47 |
| Msa1182610 | Msa1367880 | 0.807092 | 5.982713e-50 | -8.615850e-47 |
| Msa1182610 | Msa1370860 | 0.824603 | 7.381077e-54 | -8.615850e-47 |
| Msa1182610 | Msa1393740 | 0.822187 | 2.708401e-53 | -8.615850e-47 |
| Msa1182610 | Msa1404190 | 0.825530 | 4.458234e-54 | -8.615850e-47 |
| Msa1182610 | Msa1431040 | 0.802474 | 5.514211e-49 | -8.615850e-47 |
| Msa1182610 | Msa1435750 | 0.829433 | 5.161978e-55 | -8.615850e-47 |
| Msa1182610 | Msa1442850 | 0.825595 | 4.302608e-54 | -8.615850e-47 |
| Msa1182610 | Msa1462860 | 0.806224 | 9.127152e-50 | -8.615850e-47 |
| Msa1182610 | Msa1465080 | 0.830447 | 2.922090e-55 | -8.615850e-47 |
| Msa0552810 | Msa1182610 | 0.829910 | 3.951503e-55 | -8.615850e-47 |
| Msa0581070 | Msa1182610 | 0.835710 | 1.431767e-56 | -8.615850e-47 |
| Msa0966270 | Msa1182610 | 0.833177 | 6.193274e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182610 | MtrunA17_Chr8g0337431 | 100.000 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 6.37e-119 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182610 | AT3G03100.1 | 78.205 | 156 | 34 | 0 | 1 | 156 | 1 | 156 | 1.91e-93 | 268 |
| Msa1182610 | AT3G03100.2 | 77.564 | 156 | 35 | 0 | 1 | 156 | 1 | 156 | 1.42e-92 | 266 |
Find 62 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTATGTTTGTATGTA+AGG | 0.235909 | 8_1:+17735218 | None:intergenic |
| AGACAAATTGACTGTGAAAT+TGG | 0.292048 | 8_1:-17731866 | Msa1182610:three_prime_UTR |
| TCAATCCAGGGCAGAGAAAC+TGG | 0.299097 | 8_1:-17732067 | Msa1182610:CDS |
| CAAACCAAGATCCACAATAT+TGG | 0.303383 | 8_1:-17733718 | Msa1182610:CDS |
| AAACCAAGATCCACAATATT+GGG | 0.303795 | 8_1:-17733717 | Msa1182610:CDS |
| TGCCCCAATATTGTGGATCT+TGG | 0.327061 | 8_1:+17733714 | None:intergenic |
| CCACAAACGAACCGTGAATA+TGG | 0.337289 | 8_1:-17732022 | Msa1182610:exon |
| CTGGTCCAGTTTCTCTGCCC+TGG | 0.348930 | 8_1:+17732062 | None:intergenic |
| GCTTTGAGTTGCAGATGTAT+TGG | 0.383750 | 8_1:-17731995 | Msa1182610:three_prime_UTR |
| AATTGAATTAACAATTTGTC+CGG | 0.400629 | 8_1:+17731948 | None:intergenic |
| GTATACTCCAAATCAGAGAT+AGG | 0.401046 | 8_1:+17731758 | None:intergenic |
| TTCCTGCTGAATGGCATGGC+TGG | 0.403528 | 8_1:-17732316 | Msa1182610:CDS |
| AAAACTGAAAACACACAGTA+TGG | 0.410930 | 8_1:-17733649 | Msa1182610:intron |
| CCATATTCACGGTTCGTTTG+TGG | 0.419524 | 8_1:+17732022 | None:intergenic |
| AAGGGACATGCTCTCAATCC+AGG | 0.420399 | 8_1:-17732080 | Msa1182610:CDS |
| ACAGGTATCCTTCATCTTTG+AGG | 0.456990 | 8_1:+17735089 | None:intergenic |
| TTTGTATGTAAGGCTGCGTT+TGG | 0.463612 | 8_1:+17735228 | None:intergenic |
| AATATTGGGGCAACGCTTGT+TGG | 0.475730 | 8_1:-17733703 | Msa1182610:CDS |
| GATCATAAAGAAAATCTGTC+TGG | 0.476518 | 8_1:-17732131 | Msa1182610:CDS |
| CTTGTTGGTGTTGACAAATA+CGG | 0.476795 | 8_1:-17733688 | Msa1182610:CDS |
| AAGAGAAGAGAACGTGGTGG+TGG | 0.480407 | 8_1:-17735198 | Msa1182610:five_prime_UTR |
| CTTCTCAAGTTCCTGCTGAA+TGG | 0.480491 | 8_1:-17732325 | Msa1182610:CDS |
| TGTTAATTCAATTCATGAGG+TGG | 0.505124 | 8_1:-17731938 | Msa1182610:three_prime_UTR |
| TTAAACACGGTGAAGGAGAA+AGG | 0.511115 | 8_1:-17735133 | Msa1182610:CDS |
| GGACTGCCATGGTTGGTACC+TGG | 0.513101 | 8_1:+17732043 | None:intergenic |
| ACTTACAATAGGTTTCCATC+AGG | 0.523729 | 8_1:+17734737 | None:intergenic |
| TGGATTGAGAGCATGTCCCT+TGG | 0.535784 | 8_1:+17732082 | None:intergenic |
| TTCAGACACCTCAAAGATGA+AGG | 0.536736 | 8_1:-17735097 | Msa1182610:CDS |
| AGCCAGCCATGCCATTCAGC+AGG | 0.538183 | 8_1:+17732314 | None:intergenic |
| CAAGTTCCTGCTGAATGGCA+TGG | 0.538458 | 8_1:-17732320 | Msa1182610:CDS |
| ATCGATCATGGCGTCGTCGG+TGG | 0.542913 | 8_1:-17735167 | Msa1182610:exon |
| TCCAGGAGATGCCTTCCTGA+TGG | 0.545756 | 8_1:-17734752 | Msa1182610:intron |
| TCAAAGCTGAACCATATTCA+CGG | 0.548554 | 8_1:+17732011 | None:intergenic |
| GTGGATCGATCGATCGATCA+TGG | 0.552835 | 8_1:-17735179 | Msa1182610:exon |
| CAAGCGTTGCCCCAATATTG+TGG | 0.553229 | 8_1:+17733707 | None:intergenic |
| AATTGTTAATTCAATTCATG+AGG | 0.553881 | 8_1:-17731941 | Msa1182610:three_prime_UTR |
| AGAGTTTATCTATCATTCCA+AGG | 0.554573 | 8_1:-17732099 | Msa1182610:CDS |
| GGTTCGTTTGTGGACTGCCA+TGG | 0.557488 | 8_1:+17732032 | None:intergenic |
| CGTTTGTGGACTGCCATGGT+TGG | 0.558192 | 8_1:+17732036 | None:intergenic |
| TATACTCCAAATCAGAGATA+GGG | 0.566561 | 8_1:+17731759 | None:intergenic |
| ACAATAGGTTTCCATCAGGA+AGG | 0.596452 | 8_1:+17734741 | None:intergenic |
| AAAATTTGGCAGGAAGACAC+AGG | 0.598790 | 8_1:-17732382 | Msa1182610:intron |
| ACGGTGAAGGAGAAAGGTCT+CGG | 0.598993 | 8_1:-17735127 | Msa1182610:CDS |
| GAGTTTATCTATCATTCCAA+GGG | 0.600374 | 8_1:-17732098 | Msa1182610:CDS |
| AGGGACATGCTCTCAATCCA+GGG | 0.603322 | 8_1:-17732079 | Msa1182610:CDS |
| TGAATTAACAATTTGTCCGG+AGG | 0.604219 | 8_1:+17731951 | None:intergenic |
| AAAGAAAATCTGTCTGGACA+TGG | 0.605520 | 8_1:-17732125 | Msa1182610:CDS |
| TCCTATATACTGTCACCGAT+CGG | 0.605724 | 8_1:-17731837 | Msa1182610:three_prime_UTR |
| TCGATCGATCATGGCGTCGT+CGG | 0.616609 | 8_1:-17735170 | Msa1182610:exon |
| TACATCACATACATACCGAT+CGG | 0.618808 | 8_1:+17731822 | None:intergenic |
| GAGCATCTTAAACACGGTGA+AGG | 0.622926 | 8_1:-17735140 | Msa1182610:CDS |
| AAGCGAATTTACCTCATCGC+CGG | 0.625501 | 8_1:+17732271 | None:intergenic |
| AACTGATCACACCGGCGATG+AGG | 0.628022 | 8_1:-17732282 | Msa1182610:intron |
| AACCAAGATCCACAATATTG+GGG | 0.636179 | 8_1:-17733716 | Msa1182610:CDS |
| TTTGGCAGGAAGACACAGGT+GGG | 0.636329 | 8_1:-17732378 | Msa1182610:intron |
| ATTTGGCAGGAAGACACAGG+TGG | 0.636657 | 8_1:-17732379 | Msa1182610:intron |
| ACTGGACCAGGTACCAACCA+TGG | 0.665621 | 8_1:-17732049 | Msa1182610:CDS |
| GAGAAGAGAAGAGAACGTGG+TGG | 0.693087 | 8_1:-17735201 | Msa1182610:five_prime_UTR |
| CACTTCATAACTGATCACAC+CGG | 0.696701 | 8_1:-17732290 | Msa1182610:CDS |
| ATAGAGAAGAGAAGAGAACG+TGG | 0.711604 | 8_1:-17735204 | Msa1182610:five_prime_UTR |
| GGTGAAGAGCATCTTAAACA+CGG | 0.715006 | 8_1:-17735146 | Msa1182610:CDS |
| GTGAAGGAGAAAGGTCTCGG+TGG | 0.739929 | 8_1:-17735124 | Msa1182610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGAATTTAATAATAG+TGG | + | chr8_1:17731986-17732005 | None:intergenic | 15.0% |
| !! | TATGTTCAAAATAATGAATA+TGG | - | chr8_1:17732619-17732638 | Msa1182610:intron | 15.0% |
| !! | ATGTTCAAAATAATGAATAT+GGG | - | chr8_1:17732620-17732639 | Msa1182610:intron | 15.0% |
| !! | GAAAATAGATTATATCTTAT+GGG | + | chr8_1:17732896-17732915 | None:intergenic | 15.0% |
| !! | TGAAAATAGATTATATCTTA+TGG | + | chr8_1:17732897-17732916 | None:intergenic | 15.0% |
| !! | AACTAACTTAACTAATTAAA+GGG | + | chr8_1:17733496-17733515 | None:intergenic | 15.0% |
| !! | TAACTAACTTAACTAATTAA+AGG | + | chr8_1:17733497-17733516 | None:intergenic | 15.0% |
| !! | ATGATAAAATGAAATAAGAA+TGG | - | chr8_1:17733991-17734010 | Msa1182610:intron | 15.0% |
| !! | TGATAAAATGAAATAAGAAT+GGG | - | chr8_1:17733992-17734011 | Msa1182610:intron | 15.0% |
| !! | TGACAATATATTATAGAATA+TGG | + | chr8_1:17734453-17734472 | None:intergenic | 15.0% |
| !!! | CTTTATATTTTTTTAGCATA+TGG | + | chr8_1:17734703-17734722 | None:intergenic | 15.0% |
| !! | TCATAATTGAAAAAGAGAAA+TGG | + | chr8_1:17731876-17731895 | None:intergenic | 20.0% |
| !!! | TCCAATTGATTTCAATTTTA+CGG | - | chr8_1:17732046-17732065 | Msa1182610:CDS | 20.0% |
| !!! | TATTTTTGTTTTGAATTTCC+AGG | - | chr8_1:17732152-17732171 | Msa1182610:CDS | 20.0% |
| !!! | AACAAAAATTGACTTACAAT+AGG | + | chr8_1:17732198-17732217 | None:intergenic | 20.0% |
| !!! | ATTATTAGTTTTTATGCTGA+GGG | + | chr8_1:17733943-17733962 | None:intergenic | 20.0% |
| !! | TAAATGTCTAATGCAATTAT+TGG | - | chr8_1:17734091-17734110 | Msa1182610:intron | 20.0% |
| !! | ATATCACAATATTTACAATC+AGG | - | chr8_1:17734146-17734165 | Msa1182610:intron | 20.0% |
| !! | GACACATTATTGTTAAAATT+TGG | - | chr8_1:17734525-17734544 | Msa1182610:intron | 20.0% |
| !! | TTCATTGCAAATATTATGTT+GGG | + | chr8_1:17734727-17734746 | None:intergenic | 20.0% |
| !! | ATTCATTGCAAATATTATGT+TGG | + | chr8_1:17734728-17734747 | None:intergenic | 20.0% |
| !!! | TTCTTTTATTGAAACCAAAA+AGG | - | chr8_1:17734758-17734777 | Msa1182610:intron | 20.0% |
| !! | AATTGAATTAACAATTTGTC+CGG | + | chr8_1:17734976-17734995 | None:intergenic | 20.0% |
| !! | AATTGTTAATTCAATTCATG+AGG | - | chr8_1:17734980-17734999 | Msa1182610:intron | 20.0% |
| !!! | TAATTTTCAAAAAAGGTTTG+AGG | + | chr8_1:17735265-17735284 | None:intergenic | 20.0% |
| ! | TTGAAAAAGAGAAATGGAAA+GGG | + | chr8_1:17731870-17731889 | None:intergenic | 25.0% |
| ! | ATTGAAAAAGAGAAATGGAA+AGG | + | chr8_1:17731871-17731890 | None:intergenic | 25.0% |
| ! | TTAATAATCCCAAAAACGAA+AGG | + | chr8_1:17731923-17731942 | None:intergenic | 25.0% |
| !! | CTTCTTATTTAACTGCAAAA+TGG | - | chr8_1:17731999-17732018 | Msa1182610:three_prime_UTR | 25.0% |
| ! | ACCGTAAAATTGAAATCAAT+TGG | + | chr8_1:17732050-17732069 | None:intergenic | 25.0% |
| !!! | TGTTGTTTTTGGATGTAAAT+CGG | - | chr8_1:17732362-17732381 | Msa1182610:CDS | 25.0% |
| !! | ACAATTTTTCTCTATTGTGA+TGG | - | chr8_1:17732543-17732562 | Msa1182610:intron | 25.0% |
| ! | CAAAATAATGAATATGGGAT+AGG | - | chr8_1:17732625-17732644 | Msa1182610:intron | 25.0% |
| !! | GTTAAGTTGTTTATCCAAAT+AGG | + | chr8_1:17732815-17732834 | None:intergenic | 25.0% |
| !! | TCTATTTTCAATAGCTATCT+TGG | - | chr8_1:17732907-17732926 | Msa1182610:intron | 25.0% |
| ! | CTTTACAGAAACAAATCTAA+GGG | + | chr8_1:17733053-17733072 | None:intergenic | 25.0% |
| ! | ACTTTACAGAAACAAATCTA+AGG | + | chr8_1:17733054-17733073 | None:intergenic | 25.0% |
| !!! | TAGATTTGTTTCTGTAAAGT+TGG | - | chr8_1:17733054-17733073 | Msa1182610:intron | 25.0% |
| ! | TTTGATATTAATATCTCTGC+TGG | - | chr8_1:17733091-17733110 | Msa1182610:intron | 25.0% |
| ! | ATTGCTTTCTGAATTTATGT+AGG | - | chr8_1:17733180-17733199 | Msa1182610:intron | 25.0% |
| ! | TTTATTCTGATAAATGGATG+TGG | - | chr8_1:17733338-17733357 | Msa1182610:intron | 25.0% |
| ! | TATGACATAATGAACATGAT+AGG | - | chr8_1:17733465-17733484 | Msa1182610:intron | 25.0% |
| ! | CTTATCATTTGAGAGAATTA+CGG | - | chr8_1:17733563-17733582 | Msa1182610:intron | 25.0% |
| ! | GACATTACTAACTAACTAAA+GGG | + | chr8_1:17733610-17733629 | None:intergenic | 25.0% |
| ! | TGACATTACTAACTAACTAA+AGG | + | chr8_1:17733611-17733630 | None:intergenic | 25.0% |
| !!! | TGTTCTAGTTCTTTAATAGA+GGG | - | chr8_1:17733739-17733758 | Msa1182610:intron | 25.0% |
| ! | TGACAAAATGTCATTCTTAT+AGG | + | chr8_1:17733830-17733849 | None:intergenic | 25.0% |
| ! | AAAAACTTATAAGGATGACA+TGG | - | chr8_1:17733858-17733877 | Msa1182610:intron | 25.0% |
| !!! | CATTATTAGTTTTTATGCTG+AGG | + | chr8_1:17733944-17733963 | None:intergenic | 25.0% |
| ! | AAAACTAATAATGCTAGCAT+TGG | - | chr8_1:17733951-17733970 | Msa1182610:intron | 25.0% |
| ! | AATGAAATAAGAATGGGATA+TGG | - | chr8_1:17733998-17734017 | Msa1182610:intron | 25.0% |
| ! | ATCTCATATGAGTTTCTATA+TGG | - | chr8_1:17734047-17734066 | Msa1182610:intron | 25.0% |
| !! | ATATTGATTGCTTACTTGTA+AGG | + | chr8_1:17734130-17734149 | None:intergenic | 25.0% |
| ! | CATTATTGTTAAAATTTGGC+AGG | - | chr8_1:17734529-17734548 | Msa1182610:intron | 25.0% |
| ! | TATTACTTGGGAAAAGAATT+AGG | + | chr8_1:17734680-17734699 | None:intergenic | 25.0% |
| ! | TTTAGCATATGGTATTACTT+GGG | + | chr8_1:17734692-17734711 | None:intergenic | 25.0% |
| !! | TTTTAGCATATGGTATTACT+TGG | + | chr8_1:17734693-17734712 | None:intergenic | 25.0% |
| ! | TCATTGCAAATATTATGTTG+GGG | + | chr8_1:17734726-17734745 | None:intergenic | 25.0% |
| ! | TTATTGAAACCAAAAAGGTA+CGG | - | chr8_1:17734763-17734782 | Msa1182610:intron | 25.0% |
| !!! | ATGTTTGTTTTTATTTCCTC+CGG | - | chr8_1:17734954-17734973 | Msa1182610:intron | 25.0% |
| CTTCTCTATGTTTGTATGTA+AGG | + | chr8_1:17731706-17731725 | None:intergenic | 30.0% | |
| TGAAAAAGAGAAATGGAAAG+GGG | + | chr8_1:17731869-17731888 | None:intergenic | 30.0% | |
| GGGCTGAATAATGATTATTA+TGG | + | chr8_1:17731947-17731966 | None:intergenic | 30.0% | |
| ! | GGAGTTTGATTTCAACTATA+CGG | + | chr8_1:17732029-17732048 | None:intergenic | 30.0% |
| TGCTTCATAATTTCCCTAAA+TGG | - | chr8_1:17732316-17732335 | Msa1182610:CDS | 30.0% | |
| AATTTCCCTAAATGGATAGT+TGG | - | chr8_1:17732324-17732343 | Msa1182610:CDS | 30.0% | |
| !!! | GTTGTTTTTGGATGTAAATC+GGG | - | chr8_1:17732363-17732382 | Msa1182610:CDS | 30.0% |
| ! | ATTTTTCTCTATTGTGATGG+AGG | - | chr8_1:17732546-17732565 | Msa1182610:intron | 30.0% |
| !! | TTTTTCTCTATTGTGATGGA+GGG | - | chr8_1:17732547-17732566 | Msa1182610:intron | 30.0% |
| !! | TTTTGAAGAAAAGGAATGTG+AGG | - | chr8_1:17732571-17732590 | Msa1182610:intron | 30.0% |
| TTTGAAGAAAAGGAATGTGA+GGG | - | chr8_1:17732572-17732591 | Msa1182610:intron | 30.0% | |
| ATTGCAATCAGATTCCTATT+TGG | - | chr8_1:17732798-17732817 | Msa1182610:intron | 30.0% | |
| ! | TGGATAAACAACTTAACTTG+AGG | - | chr8_1:17732818-17732837 | Msa1182610:intron | 30.0% |
| ACACAAGGAAATTCAAATCT+CGG | + | chr8_1:17733133-17733152 | None:intergenic | 30.0% | |
| AATTCAGAAAGCAATTAGAG+TGG | + | chr8_1:17733175-17733194 | None:intergenic | 30.0% | |
| AAACCAAGATCCACAATATT+GGG | - | chr8_1:17733204-17733223 | Msa1182610:intron | 30.0% | |
| AAAACTGAAAACACACAGTA+TGG | - | chr8_1:17733272-17733291 | Msa1182610:intron | 30.0% | |
| GTGTGGTTTATTCTGATAAA+TGG | - | chr8_1:17733332-17733351 | Msa1182610:intron | 30.0% | |
| CTTATCATTCGAGAGAATTA+CGG | - | chr8_1:17733672-17733691 | Msa1182610:CDS | 30.0% | |
| !! | GTGTTCTAGTTCTTTAATAG+AGG | - | chr8_1:17733738-17733757 | Msa1182610:intron | 30.0% |
| TGTTTGGCAAGTAGAAAATA+GGG | + | chr8_1:17733771-17733790 | None:intergenic | 30.0% | |
| AATCATCTTATAGGCATGTT+CGG | + | chr8_1:17734239-17734258 | None:intergenic | 30.0% | |
| ATGGAATGCAATCATCTTAT+AGG | + | chr8_1:17734248-17734267 | None:intergenic | 30.0% | |
| TAAGATGATTGCATTCCATT+TGG | - | chr8_1:17734249-17734268 | Msa1182610:intron | 30.0% | |
| AAGATGATTGCATTCCATTT+GGG | - | chr8_1:17734250-17734269 | Msa1182610:intron | 30.0% | |
| ! | AAGTGTTATTGCCATTGATT+GGG | + | chr8_1:17734383-17734402 | None:intergenic | 30.0% |
| TATTGTCAAGACTCAAACTT+TGG | - | chr8_1:17734465-17734484 | Msa1182610:intron | 30.0% | |
| GATCATAAAGAAAATCTGTC+TGG | - | chr8_1:17734790-17734809 | Msa1182610:intron | 30.0% | |
| AGAGTTTATCTATCATTCCA+AGG | - | chr8_1:17734822-17734841 | Msa1182610:intron | 30.0% | |
| GAGTTTATCTATCATTCCAA+GGG | - | chr8_1:17734823-17734842 | Msa1182610:intron | 30.0% | |
| TGTTAATTCAATTCATGAGG+TGG | - | chr8_1:17734983-17735002 | Msa1182610:intron | 30.0% | |
| AGACAAATTGACTGTGAAAT+TGG | - | chr8_1:17735055-17735074 | Msa1182610:intron | 30.0% | |
| TATACTCCAAATCAGAGATA+GGG | + | chr8_1:17735165-17735184 | None:intergenic | 30.0% | |
| !! | CAAAAACGAAAGGTACTACA+CGG | + | chr8_1:17731913-17731932 | None:intergenic | 35.0% |
| !! | GTGTAGTACCTTTCGTTTTT+GGG | - | chr8_1:17731912-17731931 | Msa1182610:three_prime_UTR | 35.0% |
| !!! | GTGGAAAAAGCGCATTTTTT+GGG | + | chr8_1:17731967-17731986 | None:intergenic | 35.0% |
| !!! | AGTGGAAAAAGCGCATTTTT+TGG | + | chr8_1:17731968-17731987 | None:intergenic | 35.0% |
| ACTTACAATAGGTTTCCATC+AGG | + | chr8_1:17732187-17732206 | None:intergenic | 35.0% | |
| !!! | GAGCTTTTAGGTGTTGTTTT+TGG | - | chr8_1:17732351-17732370 | Msa1182610:CDS | 35.0% |
| !! | ATGGAGGGTTTTTGAAGAAA+AGG | - | chr8_1:17732562-17732581 | Msa1182610:intron | 35.0% |
| TTTCAACTCAACCTAAGGTA+TGG | + | chr8_1:17732763-17732782 | None:intergenic | 35.0% | |
| AGTTCTTTCAACTCAACCTA+AGG | + | chr8_1:17732768-17732787 | None:intergenic | 35.0% | |
| GGCTTATTGAGTTTATCTAC+TGG | + | chr8_1:17733018-17733037 | None:intergenic | 35.0% | |
| !! | GTTTCTGTAAAGTTGGTGAA+AGG | - | chr8_1:17733061-17733080 | Msa1182610:intron | 35.0% |
| ACAAGGAAATTCAAATCTCG+GGG | + | chr8_1:17733131-17733150 | None:intergenic | 35.0% | |
| CACAAGGAAATTCAAATCTC+GGG | + | chr8_1:17733132-17733151 | None:intergenic | 35.0% | |
| CAAACCAAGATCCACAATAT+TGG | - | chr8_1:17733203-17733222 | Msa1182610:intron | 35.0% | |
| AACCAAGATCCACAATATTG+GGG | - | chr8_1:17733205-17733224 | Msa1182610:intron | 35.0% | |
| !! | CTTGTTGGTGTTGACAAATA+CGG | - | chr8_1:17733233-17733252 | Msa1182610:intron | 35.0% |
| TCTATATCTGTATGTGTGTG+TGG | - | chr8_1:17733315-17733334 | Msa1182610:intron | 35.0% | |
| TTTGAGAGAATTACGGCATT+TGG | - | chr8_1:17733570-17733589 | Msa1182610:intron | 35.0% | |
| TTGAGAGAATTACGGCATTT+GGG | - | chr8_1:17733571-17733590 | Msa1182610:intron | 35.0% | |
| AATTACGGCATTTGGGTAAT+TGG | - | chr8_1:17733578-17733597 | Msa1182610:intron | 35.0% | |
| ATTACGGCATTTGGGTAATT+GGG | - | chr8_1:17733579-17733598 | Msa1182610:intron | 35.0% | |
| ! | AATTACGGCATCTTGGTAAT+TGG | - | chr8_1:17733687-17733706 | Msa1182610:CDS | 35.0% |
| ! | ATTACGGCATCTTGGTAATT+GGG | - | chr8_1:17733688-17733707 | Msa1182610:CDS | 35.0% |
| GTTTGGCAAGTAGAAAATAG+GGG | + | chr8_1:17733770-17733789 | None:intergenic | 35.0% | |
| CTGTTTGGCAAGTAGAAAAT+AGG | + | chr8_1:17733772-17733791 | None:intergenic | 35.0% | |
| ! | CTATTTTCTACTTGCCAAAC+AGG | - | chr8_1:17733770-17733789 | Msa1182610:intron | 35.0% |
| ! | CCTCTCTATCTTGTTATGAT+GGG | + | chr8_1:17733798-17733817 | None:intergenic | 35.0% |
| CCATCATAACAAGATAGAGA+GGG | - | chr8_1:17733796-17733815 | Msa1182610:intron | 35.0% | |
| CATCATAACAAGATAGAGAG+GGG | - | chr8_1:17733797-17733816 | Msa1182610:intron | 35.0% | |
| ATCATAACAAGATAGAGAGG+GGG | - | chr8_1:17733798-17733817 | Msa1182610:intron | 35.0% | |
| AACTTATAAGGATGACATGG+TGG | - | chr8_1:17733861-17733880 | Msa1182610:intron | 35.0% | |
| !! | TTAGTTTTTATGCTGAGGGT+GGG | + | chr8_1:17733939-17733958 | None:intergenic | 35.0% |
| !!! | ATTAGTTTTTATGCTGAGGG+TGG | + | chr8_1:17733940-17733959 | None:intergenic | 35.0% |
| ! | GAAGTGTTATTGCCATTGAT+TGG | + | chr8_1:17734384-17734403 | None:intergenic | 35.0% |
| GAACGTATGATTCACTTTAG+AGG | - | chr8_1:17734416-17734435 | Msa1182610:intron | 35.0% | |
| AAAGAAAATCTGTCTGGACA+TGG | - | chr8_1:17734796-17734815 | Msa1182610:intron | 35.0% | |
| TCAAAGCTGAACCATATTCA+CGG | + | chr8_1:17734913-17734932 | None:intergenic | 35.0% | |
| TGAATTAACAATTTGTCCGG+AGG | + | chr8_1:17734973-17734992 | None:intergenic | 35.0% | |
| TACATCACATACATACCGAT+CGG | + | chr8_1:17735102-17735121 | None:intergenic | 35.0% | |
| ! | ATTTTGCCCTATCTCTGATT+TGG | - | chr8_1:17735156-17735175 | Msa1182610:CDS | 35.0% |
| GTATACTCCAAATCAGAGAT+AGG | + | chr8_1:17735166-17735185 | None:intergenic | 35.0% | |
| TTTGTATGTAAGGCTGCGTT+TGG | + | chr8_1:17731696-17731715 | None:intergenic | 40.0% | |
| ATAGAGAAGAGAAGAGAACG+TGG | - | chr8_1:17731717-17731736 | Msa1182610:intron | 40.0% | |
| !! | GGTGAAGAGCATCTTAAACA+CGG | - | chr8_1:17731775-17731794 | Msa1182610:three_prime_UTR | 40.0% |
| TTAAACACGGTGAAGGAGAA+AGG | - | chr8_1:17731788-17731807 | Msa1182610:three_prime_UTR | 40.0% | |
| TTCAGACACCTCAAAGATGA+AGG | - | chr8_1:17731824-17731843 | Msa1182610:three_prime_UTR | 40.0% | |
| ACAGGTATCCTTCATCTTTG+AGG | + | chr8_1:17731835-17731854 | None:intergenic | 40.0% | |
| GAGAAATGGAAAGGGGAAAA+GGG | + | chr8_1:17731862-17731881 | None:intergenic | 40.0% | |
| AGAGAAATGGAAAGGGGAAA+AGG | + | chr8_1:17731863-17731882 | None:intergenic | 40.0% | |
| ! | CGTGTAGTACCTTTCGTTTT+TGG | - | chr8_1:17731911-17731930 | Msa1182610:three_prime_UTR | 40.0% |
| ACAATAGGTTTCCATCAGGA+AGG | + | chr8_1:17732183-17732202 | None:intergenic | 40.0% | |
| CGCATCCAACTATCCATTTA+GGG | + | chr8_1:17732332-17732351 | None:intergenic | 40.0% | |
| TCGCATCCAACTATCCATTT+AGG | + | chr8_1:17732333-17732352 | None:intergenic | 40.0% | |
| ! | ATAGTTGGATGCGAGCTTTT+AGG | - | chr8_1:17732339-17732358 | Msa1182610:CDS | 40.0% |
| ! | CGGGTTTGAAGAGAGTTTTT+AGG | - | chr8_1:17732490-17732509 | Msa1182610:intron | 40.0% |
| ! | TGAGGGCAGCATTTTCATTT+TGG | - | chr8_1:17732589-17732608 | Msa1182610:intron | 40.0% |
| ATGGTTGGATGGAGGATTTA+GGG | + | chr8_1:17732744-17732763 | None:intergenic | 40.0% | |
| TATGGTTGGATGGAGGATTT+AGG | + | chr8_1:17732745-17732764 | None:intergenic | 40.0% | |
| AACTCAACCTAAGGTATGGT+TGG | + | chr8_1:17732759-17732778 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGACTGTTT+GGG | + | chr8_1:17732992-17733011 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | + | chr8_1:17732993-17733012 | None:intergenic | 40.0% | |
| CTCAATAAGCCAATCCAAAC+AGG | - | chr8_1:17733027-17733046 | Msa1182610:intron | 40.0% | |
| AACAAATCTAAGGGCCTGTT+TGG | + | chr8_1:17733044-17733063 | None:intergenic | 40.0% | |
| GGAAAAACACGTGTAACACA+AGG | + | chr8_1:17733148-17733167 | None:intergenic | 40.0% | |
| GAAAGCAATTAGAGTGGAAG+AGG | + | chr8_1:17733169-17733188 | None:intergenic | 40.0% | |
| ACAGATATAGACAGAGAGAG+CGG | + | chr8_1:17733306-17733325 | None:intergenic | 40.0% | |
| AAAACCAGAATGCTTGAAGC+TGG | + | chr8_1:17733427-17733446 | None:intergenic | 40.0% | |
| ! | TTGGTAATTGGGTGGTTTGT+AGG | - | chr8_1:17733699-17733718 | Msa1182610:CDS | 40.0% |
| AGAACACTGTAGAACTTCGA+GGG | + | chr8_1:17733725-17733744 | None:intergenic | 40.0% | |
| TAGAACACTGTAGAACTTCG+AGG | + | chr8_1:17733726-17733745 | None:intergenic | 40.0% | |
| ! | TGTTATGATGGGAACCTGTT+TGG | + | chr8_1:17733787-17733806 | None:intergenic | 40.0% |
| CCCATCATAACAAGATAGAG+AGG | - | chr8_1:17733795-17733814 | Msa1182610:intron | 40.0% | |
| ! | CCCTCTCTATCTTGTTATGA+TGG | + | chr8_1:17733799-17733818 | None:intergenic | 40.0% |
| ! | TAGTTTTTATGCTGAGGGTG+GGG | + | chr8_1:17733938-17733957 | None:intergenic | 40.0% |
| TGGGATATGGTGTAATGTTG+TGG | - | chr8_1:17734011-17734030 | Msa1182610:intron | 40.0% | |
| TATGGAGCAGAATACTACTG+AGG | - | chr8_1:17734065-17734084 | Msa1182610:intron | 40.0% | |
| ATGGAGCAGAATACTACTGA+GGG | - | chr8_1:17734066-17734085 | Msa1182610:intron | 40.0% | |
| ! | CCATTGATTGGGAAATCAAC+GGG | + | chr8_1:17734372-17734391 | None:intergenic | 40.0% |
| ! | GCCATTGATTGGGAAATCAA+CGG | + | chr8_1:17734373-17734392 | None:intergenic | 40.0% |
| GTCAAGACTCAAACTTTGGT+TGG | - | chr8_1:17734469-17734488 | Msa1182610:intron | 40.0% | |
| AAAATTTGGCAGGAAGACAC+AGG | - | chr8_1:17734539-17734558 | Msa1182610:intron | 40.0% | |
| CACTTCATAACTGATCACAC+CGG | - | chr8_1:17734631-17734650 | Msa1182610:intron | 40.0% | |
| ! | TGATCAAGACCGTACCTTTT+TGG | + | chr8_1:17734775-17734794 | None:intergenic | 40.0% |
| !! | GCTTTGAGTTGCAGATGTAT+TGG | - | chr8_1:17734926-17734945 | Msa1182610:intron | 40.0% |
| TCCTATATACTGTCACCGAT+CGG | - | chr8_1:17735084-17735103 | Msa1182610:intron | 40.0% | |
| GAGCATCTTAAACACGGTGA+AGG | - | chr8_1:17731781-17731800 | Msa1182610:three_prime_UTR | 45.0% | |
| AAAGGGGAAAAGGGACAAAC+AGG | + | chr8_1:17731853-17731872 | None:intergenic | 45.0% | |
| TGAGAGTTTGTCGCCCATTT+GGG | + | chr8_1:17732437-17732456 | None:intergenic | 45.0% | |
| TGTCGTTGCATACCCAAACT+CGG | - | chr8_1:17732470-17732489 | Msa1182610:intron | 45.0% | |
| CTCTCTTCAAACCCGAGTTT+GGG | + | chr8_1:17732485-17732504 | None:intergenic | 45.0% | |
| ACTCTCTTCAAACCCGAGTT+TGG | + | chr8_1:17732486-17732505 | None:intergenic | 45.0% | |
| TGGTTGGATGGAGGATTTAG+GGG | + | chr8_1:17732743-17732762 | None:intergenic | 45.0% | |
| CAACCTAAGGTATGGTTGGA+TGG | + | chr8_1:17732755-17732774 | None:intergenic | 45.0% | |
| ATCTAAGGGCCTGTTTGGAT+TGG | + | chr8_1:17733039-17733058 | None:intergenic | 45.0% | |
| TGCCCCAATATTGTGGATCT+TGG | + | chr8_1:17733210-17733229 | None:intergenic | 45.0% | |
| AATATTGGGGCAACGCTTGT+TGG | - | chr8_1:17733218-17733237 | Msa1182610:intron | 45.0% | |
| AGATATAGACAGAGAGAGCG+GGG | + | chr8_1:17733304-17733323 | None:intergenic | 45.0% | |
| CAGATATAGACAGAGAGAGC+GGG | + | chr8_1:17733305-17733324 | None:intergenic | 45.0% | |
| AAGACCAGTTGCGATCACTT+GGG | - | chr8_1:17733392-17733411 | Msa1182610:intron | 45.0% | |
| TCGAGAGAATTACGGCATCT+TGG | - | chr8_1:17733680-17733699 | Msa1182610:CDS | 45.0% | |
| !! | TAAGGATGACATGGTGGATG+AGG | - | chr8_1:17733867-17733886 | Msa1182610:intron | 45.0% |
| AGTTAAGGAGTGGAGTGATG+AGG | - | chr8_1:17733896-17733915 | Msa1182610:intron | 45.0% | |
| GCACACACAATTGTCCCAAA+TGG | + | chr8_1:17734267-17734286 | None:intergenic | 45.0% | |
| !! | CCCGTTGATTTCCCAATCAA+TGG | - | chr8_1:17734369-17734388 | Msa1182610:intron | 45.0% |
| CTTCTCAAGTTCCTGCTGAA+TGG | - | chr8_1:17734596-17734615 | Msa1182610:intron | 45.0% | |
| AAGCGAATTTACCTCATCGC+CGG | + | chr8_1:17734653-17734672 | None:intergenic | 45.0% | |
| CCATATTCACGGTTCGTTTG+TGG | + | chr8_1:17734902-17734921 | None:intergenic | 45.0% | |
| CCACAAACGAACCGTGAATA+TGG | - | chr8_1:17734899-17734918 | Msa1182610:intron | 45.0% | |
| ACCGATCGGTGACAGTATAT+AGG | + | chr8_1:17735088-17735107 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAAAAAACTTATA+AGG | - | chr8_1:17733849-17733868 | Msa1182610:intron | 5.0% |
| GAGAAGAGAAGAGAACGTGG+TGG | - | chr8_1:17731720-17731739 | Msa1182610:intron | 50.0% | |
| AAGAGAAGAGAACGTGGTGG+TGG | - | chr8_1:17731723-17731742 | Msa1182610:intron | 50.0% | |
| GTGGATCGATCGATCGATCA+TGG | - | chr8_1:17731742-17731761 | Msa1182610:intron | 50.0% | |
| ACGGTGAAGGAGAAAGGTCT+CGG | - | chr8_1:17731794-17731813 | Msa1182610:three_prime_UTR | 50.0% | |
| ACTAAACCCTCGCGCTTTGT+AGG | - | chr8_1:17732410-17732429 | Msa1182610:intron | 50.0% | |
| GCGCTTTGTAGGACCCAAAT+GGG | - | chr8_1:17732421-17732440 | Msa1182610:intron | 50.0% | |
| GTGAGAGTTTGTCGCCCATT+TGG | + | chr8_1:17732438-17732457 | None:intergenic | 50.0% | |
| GTCGTTGCATACCCAAACTC+GGG | - | chr8_1:17732471-17732490 | Msa1182610:intron | 50.0% | |
| TTGGATGGAGGATTTAGGGG+GGG | + | chr8_1:17732740-17732759 | None:intergenic | 50.0% | |
| GTTGGATGGAGGATTTAGGG+GGG | + | chr8_1:17732741-17732760 | None:intergenic | 50.0% | |
| GGTTGGATGGAGGATTTAGG+GGG | + | chr8_1:17732742-17732761 | None:intergenic | 50.0% | |
| CCTAAGGTATGGTTGGATGG+AGG | + | chr8_1:17732752-17732771 | None:intergenic | 50.0% | |
| CCTCCATCCAACCATACCTT+AGG | - | chr8_1:17732749-17732768 | Msa1182610:intron | 50.0% | |
| ! | CAAGCGTTGCCCCAATATTG+TGG | + | chr8_1:17733217-17733236 | None:intergenic | 50.0% |
| ! | CAAGTGATCGCAACTGGTCT+TGG | + | chr8_1:17733393-17733412 | None:intergenic | 50.0% |
| CAAGACCAGTTGCGATCACT+TGG | - | chr8_1:17733391-17733410 | Msa1182610:intron | 50.0% | |
| ATCGCCAGCTTCAAGCATTC+TGG | - | chr8_1:17733420-17733439 | Msa1182610:intron | 50.0% | |
| ! | ACGGCATCTTGGTAATTGGG+TGG | - | chr8_1:17733691-17733710 | Msa1182610:CDS | 50.0% |
| !! | GATGACATGGTGGATGAGGT+GGG | - | chr8_1:17733871-17733890 | Msa1182610:intron | 50.0% |
| TGGATGAGGTGGGAGAGTTA+AGG | - | chr8_1:17733881-17733900 | Msa1182610:intron | 50.0% | |
| TAAGGAGTGGAGTGATGAGG+AGG | - | chr8_1:17733899-17733918 | Msa1182610:intron | 50.0% | |
| TGGAGTGATGAGGAGGTCAA+TGG | - | chr8_1:17733906-17733925 | Msa1182610:intron | 50.0% | |
| TGTGTGCAACACACAGCGAA+AGG | - | chr8_1:17734280-17734299 | Msa1182610:intron | 50.0% | |
| ATTTGGCAGGAAGACACAGG+TGG | - | chr8_1:17734542-17734561 | Msa1182610:intron | 50.0% | |
| TTTGGCAGGAAGACACAGGT+GGG | - | chr8_1:17734543-17734562 | Msa1182610:intron | 50.0% | |
| CAAGTTCCTGCTGAATGGCA+TGG | - | chr8_1:17734601-17734620 | Msa1182610:intron | 50.0% | |
| ! | TGGATTGAGAGCATGTCCCT+TGG | + | chr8_1:17734842-17734861 | None:intergenic | 50.0% |
| AAGGGACATGCTCTCAATCC+AGG | - | chr8_1:17734841-17734860 | Msa1182610:intron | 50.0% | |
| AGGGACATGCTCTCAATCCA+GGG | - | chr8_1:17734842-17734861 | Msa1182610:intron | 50.0% | |
| TCAATCCAGGGCAGAGAAAC+TGG | - | chr8_1:17734854-17734873 | Msa1182610:intron | 50.0% | |
| TCGATCGATCATGGCGTCGT+CGG | - | chr8_1:17731751-17731770 | Msa1182610:intron | 55.0% | |
| GTGAAGGAGAAAGGTCTCGG+TGG | - | chr8_1:17731797-17731816 | Msa1182610:three_prime_UTR | 55.0% | |
| TCCAGGAGATGCCTTCCTGA+TGG | - | chr8_1:17732169-17732188 | Msa1182610:intron | 55.0% | |
| !! | TCCATCAGGAAGGCATCTCC+TGG | + | chr8_1:17732173-17732192 | None:intergenic | 55.0% |
| GTATCCTCTGCCTGCAATGG+CGG | - | chr8_1:17732385-17732404 | Msa1182610:intron | 55.0% | |
| GGTTTAGTCTCCGCCATTGC+AGG | + | chr8_1:17732398-17732417 | None:intergenic | 55.0% | |
| TTGGGTCCTACAAAGCGCGA+GGG | + | chr8_1:17732419-17732438 | None:intergenic | 55.0% | |
| TTTGGGTCCTACAAAGCGCG+AGG | + | chr8_1:17732420-17732439 | None:intergenic | 55.0% | |
| CGCGCTTTGTAGGACCCAAA+TGG | - | chr8_1:17732420-17732439 | Msa1182610:intron | 55.0% | |
| TTTAGGGGGGGACGAAAGGA+CGG | + | chr8_1:17732728-17732747 | None:intergenic | 55.0% | |
| AGGATTTAGGGGGGGACGAA+AGG | + | chr8_1:17732732-17732751 | None:intergenic | 55.0% | |
| !! | CTGGTCTTGGCTCAAGGGAT+TGG | + | chr8_1:17733380-17733399 | None:intergenic | 55.0% |
| !! | CGCAACTGGTCTTGGCTCAA+GGG | + | chr8_1:17733385-17733404 | None:intergenic | 55.0% |
| !! | TCGCAACTGGTCTTGGCTCA+AGG | + | chr8_1:17733386-17733405 | None:intergenic | 55.0% |
| !! | GGATGACATGGTGGATGAGG+TGG | - | chr8_1:17733870-17733889 | Msa1182610:intron | 55.0% |
| GAGGTGGGAGAGTTAAGGAG+TGG | - | chr8_1:17733886-17733905 | Msa1182610:intron | 55.0% | |
| TTCCTGCTGAATGGCATGGC+TGG | - | chr8_1:17734605-17734624 | Msa1182610:intron | 55.0% | |
| AACTGATCACACCGGCGATG+AGG | - | chr8_1:17734639-17734658 | Msa1182610:intron | 55.0% | |
| ACTGGACCAGGTACCAACCA+TGG | - | chr8_1:17734872-17734891 | Msa1182610:intron | 55.0% | |
| ! | CGTTTGTGGACTGCCATGGT+TGG | + | chr8_1:17734888-17734907 | None:intergenic | 55.0% |
| ! | GGTTCGTTTGTGGACTGCCA+TGG | + | chr8_1:17734892-17734911 | None:intergenic | 55.0% |
| ATCGATCATGGCGTCGTCGG+TGG | - | chr8_1:17731754-17731773 | Msa1182610:intron | 60.0% | |
| CGGGTATCCTCTGCCTGCAA+TGG | - | chr8_1:17732382-17732401 | Msa1182610:intron | 60.0% | |
| GCAGCCCAAGTGATCGCAAC+TGG | + | chr8_1:17733399-17733418 | None:intergenic | 60.0% | |
| AGCCAGCCATGCCATTCAGC+AGG | + | chr8_1:17734610-17734629 | None:intergenic | 60.0% | |
| CTGGTCCAGTTTCTCTGCCC+TGG | + | chr8_1:17734862-17734881 | None:intergenic | 60.0% | |
| CAGGGCAGAGAAACTGGACC+AGG | - | chr8_1:17734860-17734879 | Msa1182610:intron | 60.0% | |
| ! | GGACTGCCATGGTTGGTACC+TGG | + | chr8_1:17734881-17734900 | None:intergenic | 60.0% |
| GTCTCCGCCATTGCAGGCAG+AGG | + | chr8_1:17732392-17732411 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 17731655 | 17735288 | 17731655 | ID=Msa1182610;Name=Msa1182610 |
| chr8_1 | mRNA | 17731655 | 17735288 | 17731655 | ID=Msa1182610-mRNA-1;Parent=Msa1182610;Name=Msa1182610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=106|1|1|1|0.8|0.66|6|334|159 |
| chr8_1 | exon | 17731655 | 17731726 | 17731655 | ID=Msa1182610-mRNA-1:exon:6709;Parent=Msa1182610-mRNA-1 |
| chr8_1 | exon | 17731766 | 17732186 | 17731766 | ID=Msa1182610-mRNA-1:exon:6708;Parent=Msa1182610-mRNA-1 |
| chr8_1 | exon | 17732283 | 17732392 | 17732283 | ID=Msa1182610-mRNA-1:exon:6707;Parent=Msa1182610-mRNA-1 |
| chr8_1 | exon | 17733650 | 17733741 | 17733650 | ID=Msa1182610-mRNA-1:exon:6706;Parent=Msa1182610-mRNA-1 |
| chr8_1 | exon | 17734743 | 17734769 | 17734743 | ID=Msa1182610-mRNA-1:exon:6705;Parent=Msa1182610-mRNA-1 |
| chr8_1 | exon | 17735091 | 17735288 | 17735091 | ID=Msa1182610-mRNA-1:exon:6704;Parent=Msa1182610-mRNA-1 |
| chr8_1 | five_prime_UTR | 17735183 | 17735288 | 17735183 | ID=Msa1182610-mRNA-1:five_prime_utr;Parent=Msa1182610-mRNA-1 |
| chr8_1 | CDS | 17735091 | 17735182 | 17735091 | ID=Msa1182610-mRNA-1:cds;Parent=Msa1182610-mRNA-1 |
| chr8_1 | CDS | 17734743 | 17734769 | 17734743 | ID=Msa1182610-mRNA-1:cds;Parent=Msa1182610-mRNA-1 |
| chr8_1 | CDS | 17733650 | 17733741 | 17733650 | ID=Msa1182610-mRNA-1:cds;Parent=Msa1182610-mRNA-1 |
| chr8_1 | CDS | 17732283 | 17732392 | 17732283 | ID=Msa1182610-mRNA-1:cds;Parent=Msa1182610-mRNA-1 |
| chr8_1 | CDS | 17732028 | 17732186 | 17732028 | ID=Msa1182610-mRNA-1:cds;Parent=Msa1182610-mRNA-1 |
| chr8_1 | three_prime_UTR | 17731766 | 17732027 | 17731766 | ID=Msa1182610-mRNA-1:three_prime_utr;Parent=Msa1182610-mRNA-1 |
| chr8_1 | three_prime_UTR | 17731655 | 17731726 | 17731655 | ID=Msa1182610-mRNA-1:three_prime_utr;Parent=Msa1182610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
