Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647490 | XP_013456572.1 | 97.867 | 375 | 8 | 0 | 1 | 375 | 1 | 375 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004980 | Msa0647490 | 0.814287 | 1.663451e-51 | -8.615850e-47 |
| Msa0008410 | Msa0647490 | 0.812780 | 3.567904e-51 | -8.615850e-47 |
| Msa0027580 | Msa0647490 | 0.805555 | 1.261574e-49 | -8.615850e-47 |
| Msa0047980 | Msa0647490 | 0.829536 | 4.872121e-55 | -8.615850e-47 |
| Msa0057140 | Msa0647490 | 0.810035 | 1.408103e-50 | -8.615850e-47 |
| Msa0064350 | Msa0647490 | 0.807374 | 5.216040e-50 | -8.615850e-47 |
| Msa0073670 | Msa0647490 | 0.824018 | 1.012897e-53 | -8.615850e-47 |
| Msa0075340 | Msa0647490 | 0.806401 | 8.373648e-50 | -8.615850e-47 |
| Msa0076000 | Msa0647490 | 0.826877 | 2.131873e-54 | -8.615850e-47 |
| Msa0082280 | Msa0647490 | 0.836846 | 7.364650e-57 | -8.615850e-47 |
| Msa0084650 | Msa0647490 | 0.806789 | 6.934725e-50 | -8.615850e-47 |
| Msa0094950 | Msa0647490 | 0.818271 | 2.138142e-52 | -8.615850e-47 |
| Msa0095380 | Msa0647490 | 0.801437 | 9.006618e-49 | -8.615850e-47 |
| Msa0101180 | Msa0647490 | 0.802993 | 4.309055e-49 | -8.615850e-47 |
| Msa0115390 | Msa0647490 | 0.800167 | 1.636398e-48 | -8.615850e-47 |
| Msa0607510 | Msa0647490 | 0.806138 | 9.514112e-50 | -8.615850e-47 |
| Msa0623700 | Msa0647490 | 0.809602 | 1.745141e-50 | -8.615850e-47 |
| Msa0639120 | Msa0647490 | 0.806508 | 7.949457e-50 | -8.615850e-47 |
| Msa0647490 | Msa0650920 | 0.804607 | 1.992166e-49 | -8.615850e-47 |
| Msa0647490 | Msa0663900 | 0.830401 | 2.999172e-55 | -8.615850e-47 |
| Msa0647490 | Msa0664960 | 0.826132 | 3.208228e-54 | -8.615850e-47 |
| Msa0647490 | Msa0682780 | 0.838453 | 2.849342e-57 | -8.615850e-47 |
| Msa0647490 | Msa0683780 | 0.807653 | 4.549967e-50 | -8.615850e-47 |
| Msa0647490 | Msa0687630 | 0.865392 | 6.106535e-65 | -8.615850e-47 |
| Msa0647490 | Msa0690160 | 0.920775 | 8.342468e-88 | -8.615850e-47 |
| Msa0647490 | Msa0692940 | 0.820197 | 7.787899e-53 | -8.615850e-47 |
| Msa0647490 | Msa0703230 | 0.818285 | 2.122944e-52 | -8.615850e-47 |
| Msa0647490 | Msa0705040 | 0.800979 | 1.117573e-48 | -8.615850e-47 |
| Msa0647490 | Msa0705600 | 0.810421 | 1.162282e-50 | -8.615850e-47 |
| Msa0647490 | Msa0706960 | 0.807037 | 6.145707e-50 | -8.615850e-47 |
| Msa0647490 | Msa0711490 | 0.813291 | 2.757812e-51 | -8.615850e-47 |
| Msa0647490 | Msa0713820 | 0.812759 | 3.606622e-51 | -8.615850e-47 |
| Msa0647490 | Msa0735310 | 0.803988 | 2.679915e-49 | -8.615850e-47 |
| Msa0647490 | Msa0747700 | 0.843032 | 1.798174e-58 | -8.615850e-47 |
| Msa0647490 | Msa0787750 | 0.824160 | 9.383975e-54 | -8.615850e-47 |
| Msa0647490 | Msa0798000 | -0.809833 | 1.556006e-50 | -8.615850e-47 |
| Msa0647490 | Msa0805500 | 0.817295 | 3.550851e-52 | -8.615850e-47 |
| Msa0647490 | Msa0806920 | 0.803608 | 3.214475e-49 | -8.615850e-47 |
| Msa0647490 | Msa0813720 | 0.809932 | 1.481874e-50 | -8.615850e-47 |
| Msa0647490 | Msa0814250 | 0.807650 | 4.558059e-50 | -8.615850e-47 |
| Msa0647490 | Msa0824640 | 0.845331 | 4.340238e-59 | -8.615850e-47 |
| Msa0647490 | Msa0833310 | 0.808239 | 3.414520e-50 | -8.615850e-47 |
| Msa0647490 | Msa0837660 | 0.818549 | 1.850014e-52 | -8.615850e-47 |
| Msa0647490 | Msa0847080 | 0.830225 | 3.310481e-55 | -8.615850e-47 |
| Msa0647490 | Msa0864010 | 0.845068 | 5.112199e-59 | -8.615850e-47 |
| Msa0647490 | Msa0871890 | 0.836204 | 1.073103e-56 | -8.615850e-47 |
| Msa0647490 | Msa0900630 | 0.818016 | 2.442362e-52 | -8.615850e-47 |
| Msa0647490 | Msa0905260 | 0.824858 | 6.426034e-54 | -8.615850e-47 |
| Msa0647490 | Msa0933290 | 0.802050 | 6.742901e-49 | -8.615850e-47 |
| Msa0647490 | Msa0966270 | 0.827743 | 1.321865e-54 | -8.615850e-47 |
| Msa0647490 | Msa0967370 | 0.802195 | 6.295950e-49 | -8.615850e-47 |
| Msa0647490 | Msa0974530 | 0.803983 | 2.686268e-49 | -8.615850e-47 |
| Msa0647490 | Msa0974810 | 0.828495 | 8.711078e-55 | -8.615850e-47 |
| Msa0647490 | Msa1019240 | 0.804584 | 2.013994e-49 | -8.615850e-47 |
| Msa0647490 | Msa1019260 | 0.812031 | 5.201329e-51 | -8.615850e-47 |
| Msa0647490 | Msa1040890 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
| Msa0647490 | Msa1073400 | 0.808225 | 3.438481e-50 | -8.615850e-47 |
| Msa0647490 | Msa1082700 | 0.809957 | 1.463690e-50 | -8.615850e-47 |
| Msa0647490 | Msa1089840 | 0.848730 | 5.086289e-60 | -8.615850e-47 |
| Msa0647490 | Msa1104210 | 0.803132 | 4.033973e-49 | -8.615850e-47 |
| Msa0647490 | Msa1126510 | 0.832592 | 8.658284e-56 | -8.615850e-47 |
| Msa0647490 | Msa1126770 | 0.849167 | 3.847015e-60 | -8.615850e-47 |
| Msa0647490 | Msa1138870 | 0.813266 | 2.791771e-51 | -8.615850e-47 |
| Msa0647490 | Msa1143840 | 0.807947 | 3.940641e-50 | -8.615850e-47 |
| Msa0647490 | Msa1166010 | 0.826428 | 2.727786e-54 | -8.615850e-47 |
| Msa0647490 | Msa1166860 | 0.829602 | 4.696461e-55 | -8.615850e-47 |
| Msa0647490 | Msa1166870 | 0.832920 | 7.176134e-56 | -8.615850e-47 |
| Msa0647490 | Msa1182610 | 0.803455 | 3.457078e-49 | -8.615850e-47 |
| Msa0647490 | Msa1184370 | 0.851020 | 1.164864e-60 | -8.615850e-47 |
| Msa0647490 | Msa1201830 | 0.812227 | 4.713368e-51 | -8.615850e-47 |
| Msa0647490 | Msa1210810 | 0.800371 | 1.487185e-48 | -8.615850e-47 |
| Msa0647490 | Msa1227690 | 0.863814 | 1.903194e-64 | -8.615850e-47 |
| Msa0647490 | Msa1234980 | 0.852068 | 5.882748e-61 | -8.615850e-47 |
| Msa0647490 | Msa1236960 | 0.848369 | 6.404746e-60 | -8.615850e-47 |
| Msa0647490 | Msa1269300 | 0.853251 | 2.704437e-61 | -8.615850e-47 |
| Msa0647490 | Msa1272460 | 0.825812 | 3.821789e-54 | -8.615850e-47 |
| Msa0647490 | Msa1276930 | 0.819311 | 1.241433e-52 | -8.615850e-47 |
| Msa0647490 | Msa1278050 | 0.825283 | 5.100330e-54 | -8.615850e-47 |
| Msa0647490 | Msa1294840 | 0.822295 | 2.557648e-53 | -8.615850e-47 |
| Msa0647490 | Msa1304820 | 0.827973 | 1.163491e-54 | -8.615850e-47 |
| Msa0647490 | Msa1306990 | 0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0647490 | Msa1307950 | 0.830977 | 2.166704e-55 | -8.615850e-47 |
| Msa0647490 | Msa1310690 | 0.876009 | 1.962572e-68 | -8.615850e-47 |
| Msa0647490 | Msa1345450 | 0.836074 | 1.158151e-56 | -8.615850e-47 |
| Msa0647490 | Msa1363860 | 0.805050 | 1.609579e-49 | -8.615850e-47 |
| Msa0647490 | Msa1364910 | 0.826486 | 2.642430e-54 | -8.615850e-47 |
| Msa0647490 | Msa1365150 | 0.834598 | 2.732134e-56 | -8.615850e-47 |
| Msa0647490 | Msa1367880 | 0.818868 | 1.565401e-52 | -8.615850e-47 |
| Msa0647490 | Msa1368210 | 0.801061 | 1.075331e-48 | -8.615850e-47 |
| Msa0647490 | Msa1370860 | 0.843501 | 1.347823e-58 | -8.615850e-47 |
| Msa0647490 | Msa1372310 | 0.826218 | 3.061202e-54 | -8.615850e-47 |
| Msa0647490 | Msa1373330 | 0.808670 | 2.763779e-50 | -8.615850e-47 |
| Msa0647490 | Msa1397810 | 0.811516 | 6.733125e-51 | -8.615850e-47 |
| Msa0647490 | Msa1397940 | 0.812958 | 3.261805e-51 | -8.615850e-47 |
| Msa0647490 | Msa1404010 | 0.849233 | 3.688908e-60 | -8.615850e-47 |
| Msa0647490 | Msa1404190 | 0.861999 | 6.912633e-64 | -8.615850e-47 |
| Msa0647490 | Msa1423910 | 0.802814 | 4.691715e-49 | -8.615850e-47 |
| Msa0647490 | Msa1431040 | 0.818505 | 1.893082e-52 | -8.615850e-47 |
| Msa0647490 | Msa1435750 | 0.821390 | 4.141628e-53 | -8.615850e-47 |
| Msa0647490 | Msa1438640 | 0.821312 | 4.316858e-53 | -8.615850e-47 |
| Msa0647490 | Msa1442850 | 0.851259 | 9.971143e-61 | -8.615850e-47 |
| Msa0647490 | Msa1450280 | 0.845183 | 4.759590e-59 | -8.615850e-47 |
| Msa0647490 | Msa1453080 | 0.853394 | 2.459803e-61 | -8.615850e-47 |
| Msa0647490 | Msa1461280 | 0.801547 | 8.552050e-49 | -8.615850e-47 |
| Msa0647490 | Msa1462860 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0647490 | Msa1465080 | 0.845373 | 4.229907e-59 | -8.615850e-47 |
| Msa0121820 | Msa0647490 | 0.807578 | 4.721214e-50 | -8.615850e-47 |
| Msa0149390 | Msa0647490 | 0.818074 | 2.369664e-52 | -8.615850e-47 |
| Msa0155430 | Msa0647490 | 0.835386 | 1.729088e-56 | -8.615850e-47 |
| Msa0165950 | Msa0647490 | 0.812610 | 3.887781e-51 | -8.615850e-47 |
| Msa0166750 | Msa0647490 | 0.825026 | 5.865721e-54 | -8.615850e-47 |
| Msa0167480 | Msa0647490 | 0.824492 | 7.838142e-54 | -8.615850e-47 |
| Msa0174770 | Msa0647490 | 0.849559 | 2.991647e-60 | -8.615850e-47 |
| Msa0181610 | Msa0647490 | 0.819834 | 9.429172e-53 | -8.615850e-47 |
| Msa0182280 | Msa0647490 | 0.801497 | 8.758356e-49 | -8.615850e-47 |
| Msa0183460 | Msa0647490 | 0.835738 | 1.409034e-56 | -8.615850e-47 |
| Msa0186890 | Msa0647490 | 0.819307 | 1.244313e-52 | -8.615850e-47 |
| Msa0187930 | Msa0647490 | 0.805034 | 1.622048e-49 | -8.615850e-47 |
| Msa0194480 | Msa0647490 | 0.818990 | 1.469200e-52 | -8.615850e-47 |
| Msa0194540 | Msa0647490 | 0.811395 | 7.153568e-51 | -8.615850e-47 |
| Msa0199690 | Msa0647490 | 0.845920 | 3.004910e-59 | -8.615850e-47 |
| Msa0199880 | Msa0647490 | 0.814817 | 1.269791e-51 | -8.615850e-47 |
| Msa0236270 | Msa0647490 | 0.815908 | 7.265017e-52 | -8.615850e-47 |
| Msa0236980 | Msa0647490 | 0.809503 | 1.832354e-50 | -8.615850e-47 |
| Msa0376690 | Msa0647490 | 0.846528 | 2.053058e-59 | -8.615850e-47 |
| Msa0380040 | Msa0647490 | 0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0392940 | Msa0647490 | 0.840669 | 7.566929e-58 | -8.615850e-47 |
| Msa0394400 | Msa0647490 | 0.844168 | 8.935957e-59 | -8.615850e-47 |
| Msa0402330 | Msa0647490 | 0.826490 | 2.636955e-54 | -8.615850e-47 |
| Msa0403190 | Msa0647490 | 0.810080 | 1.376789e-50 | -8.615850e-47 |
| Msa0413450 | Msa0647490 | 0.809174 | 2.155927e-50 | -8.615850e-47 |
| Msa0415430 | Msa0647490 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0416400 | Msa0647490 | 0.807057 | 6.085655e-50 | -8.615850e-47 |
| Msa0426330 | Msa0647490 | 0.801925 | 7.152345e-49 | -8.615850e-47 |
| Msa0429290 | Msa0647490 | 0.801455 | 8.930221e-49 | -8.615850e-47 |
| Msa0449820 | Msa0647490 | 0.802929 | 4.442803e-49 | -8.615850e-47 |
| Msa0471590 | Msa0647490 | 0.848825 | 4.788496e-60 | -8.615850e-47 |
| Msa0481480 | Msa0647490 | 0.810474 | 1.131980e-50 | -8.615850e-47 |
| Msa0242230 | Msa0647490 | 0.811961 | 5.386638e-51 | -8.615850e-47 |
| Msa0244780 | Msa0647490 | 0.803446 | 3.473443e-49 | -8.615850e-47 |
| Msa0260240 | Msa0647490 | 0.819123 | 1.369976e-52 | -8.615850e-47 |
| Msa0260280 | Msa0647490 | 0.822888 | 1.861787e-53 | -8.615850e-47 |
| Msa0267970 | Msa0647490 | 0.807631 | 4.600686e-50 | -8.615850e-47 |
| Msa0268130 | Msa0647490 | 0.802902 | 4.500651e-49 | -8.615850e-47 |
| Msa0280430 | Msa0647490 | 0.851985 | 6.211432e-61 | -8.615850e-47 |
| Msa0291520 | Msa0647490 | 0.816627 | 5.016812e-52 | -8.615850e-47 |
| Msa0304260 | Msa0647490 | 0.814809 | 1.274855e-51 | -8.615850e-47 |
| Msa0304300 | Msa0647490 | 0.806186 | 9.295915e-50 | -8.615850e-47 |
| Msa0304590 | Msa0647490 | 0.822534 | 2.250553e-53 | -8.615850e-47 |
| Msa0304660 | Msa0647490 | 0.815855 | 7.465126e-52 | -8.615850e-47 |
| Msa0310410 | Msa0647490 | 0.838439 | 2.873337e-57 | -8.615850e-47 |
| Msa0322890 | Msa0647490 | 0.818041 | 2.410404e-52 | -8.615850e-47 |
| Msa0331700 | Msa0647490 | 0.816246 | 6.103332e-52 | -8.615850e-47 |
| Msa0337650 | Msa0647490 | 0.806601 | 7.600452e-50 | -8.615850e-47 |
| Msa0347680 | Msa0647490 | 0.811199 | 7.888191e-51 | -8.615850e-47 |
| Msa0355270 | Msa0647490 | 0.837419 | 5.255751e-57 | -8.615850e-47 |
| Msa0485850 | Msa0647490 | 0.822730 | 2.025766e-53 | -8.615850e-47 |
| Msa0508590 | Msa0647490 | 0.811676 | 6.215045e-51 | -8.615850e-47 |
| Msa0508630 | Msa0647490 | 0.810524 | 1.104664e-50 | -8.615850e-47 |
| Msa0513440 | Msa0647490 | 0.832944 | 7.077660e-56 | -8.615850e-47 |
| Msa0541860 | Msa0647490 | 0.816715 | 4.792548e-52 | -8.615850e-47 |
| Msa0552810 | Msa0647490 | 0.837805 | 4.185134e-57 | -8.615850e-47 |
| Msa0560470 | Msa0647490 | 0.800076 | 1.707373e-48 | -8.615850e-47 |
| Msa0576940 | Msa0647490 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa0581070 | Msa0647490 | 0.842069 | 3.238798e-58 | -8.615850e-47 |
| Msa0585900 | Msa0647490 | 0.802361 | 5.818847e-49 | -8.615850e-47 |
| Msa0594910 | Msa0647490 | 0.803802 | 2.929334e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647490 | MtrunA17_Chr4g0038631 | 97.867 | 375 | 8 | 0 | 1 | 375 | 1 | 375 | 0.0 | 731 |
| Msa0647490 | MtrunA17_Chr3g0145431 | 74.114 | 367 | 84 | 5 | 7 | 370 | 4 | 362 | 0.0 | 538 |
| Msa0647490 | MtrunA17_Chr7g0274121 | 24.927 | 341 | 235 | 9 | 13 | 348 | 4 | 328 | 3.43e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647490 | AT4G38810.2 | 68.889 | 360 | 106 | 4 | 19 | 374 | 13 | 370 | 6.38e-175 | 492 |
| Msa0647490 | AT4G38810.1 | 63.740 | 262 | 89 | 4 | 117 | 374 | 1 | 260 | 4.50e-112 | 328 |
| Msa0647490 | AT5G28830.1 | 24.731 | 279 | 192 | 6 | 84 | 353 | 54 | 323 | 2.72e-13 | 70.5 |
Find 89 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAATATGGAAACTATTTC+TGG | 0.176008 | 4_3:-53619790 | None:intergenic |
| GAAAATATTAACTGAAATAT+TGG | 0.195437 | 4_3:+53620810 | Msa0647490:CDS |
| TCTAGATGGTTCTAATATTA+TGG | 0.203327 | 4_3:+53616822 | Msa0647490:CDS |
| CAACCTGCTGTTTCTGATAT+TGG | 0.268714 | 4_3:+53616943 | Msa0647490:CDS |
| AAAATATTAACTGAAATATT+GGG | 0.282504 | 4_3:+53620811 | Msa0647490:CDS |
| TATCCAACTCTTGAAACTTA+TGG | 0.283682 | 4_3:-53616885 | None:intergenic |
| TGATTCAATTTGAGAGAATA+TGG | 0.286182 | 4_3:-53619803 | None:intergenic |
| TTATTCTCTTAATTATATAA+TGG | 0.297482 | 4_3:+53621168 | Msa0647490:three_prime_UTR |
| CTTGTCTAATTCAAACTTGT+TGG | 0.302176 | 4_3:-53620366 | None:intergenic |
| GAATTTGAAGCAACTGCTAT+AGG | 0.336697 | 4_3:-53620862 | None:intergenic |
| GAGACTCAGTTGCCCAAGTT+TGG | 0.345432 | 4_3:+53621106 | Msa0647490:three_prime_UTR |
| GTCACAATGGAGAGTGGTTC+AGG | 0.353157 | 4_3:+53616757 | Msa0647490:exon |
| ATGCAGATGGATAAGGTAAT+TGG | 0.359367 | 4_3:+53620727 | Msa0647490:intron |
| CATAGTGAAAGCACCTTTGA+TGG | 0.361301 | 4_3:+53620320 | Msa0647490:CDS |
| TCTGCTGCTTTACCTCCATT+TGG | 0.364921 | 4_3:+53620586 | Msa0647490:CDS |
| TCTAATATTATGGAGTTAGT+TGG | 0.369024 | 4_3:+53616832 | Msa0647490:CDS |
| TGTTGATCTTCCTTTATTGA+TGG | 0.376073 | 4_3:-53616520 | None:intergenic |
| TTCCTCCTACATCCGACTCT+TGG | 0.384801 | 4_3:+53619890 | Msa0647490:CDS |
| TCTGATATTGGTGCTGCTCT+TGG | 0.389372 | 4_3:+53616955 | Msa0647490:CDS |
| ATTCTGTTGGGCATGGCTGC+TGG | 0.394761 | 4_3:+53619688 | Msa0647490:CDS |
| ACAAATAAACAAGCCAAACT+TGG | 0.397731 | 4_3:-53621119 | None:intergenic |
| ACTAGAACATCCATCAATAA+AGG | 0.400455 | 4_3:+53616510 | None:intergenic |
| ACTATTTCTGGTTCATAACT+TGG | 0.407354 | 4_3:-53619778 | None:intergenic |
| ATGTGGAAGCTTTGAGGCTA+GGG | 0.407864 | 4_3:+53621083 | Msa0647490:three_prime_UTR |
| ATGAGTTATGCTGTTTCAGC+AGG | 0.408229 | 4_3:-53620934 | None:intergenic |
| TTTGGTTATGCAGATGGATA+AGG | 0.417615 | 4_3:+53620720 | Msa0647490:intron |
| TCCTCCTACATCCGACTCTT+GGG | 0.417745 | 4_3:+53619891 | Msa0647490:CDS |
| TTTGGAGGAATTTAAGAAAG+TGG | 0.440664 | 4_3:+53620250 | Msa0647490:CDS |
| AGTTTGGCTTGTTTATTTGT+TGG | 0.442116 | 4_3:+53621122 | Msa0647490:three_prime_UTR |
| GAATAGATGTGATCAGAATC+AGG | 0.442822 | 4_3:-53617000 | None:intergenic |
| GCTCTTGGTTTACCTGCTAA+AGG | 0.452773 | 4_3:+53616970 | Msa0647490:CDS |
| CTCAGACATTCTGTTGGGCA+TGG | 0.454330 | 4_3:+53619681 | Msa0647490:CDS |
| GGATTACCTACGCGTGGCGC+TGG | 0.455637 | 4_3:+53620549 | Msa0647490:CDS |
| ACCTCTTCTATTGCACCAAA+TGG | 0.461829 | 4_3:-53620601 | None:intergenic |
| ATTGTGATACTTCGCATTGA+CGG | 0.462861 | 4_3:+53619727 | Msa0647490:CDS |
| GAGTGTGGCTAATCGTCTTA+AGG | 0.467071 | 4_3:+53620277 | Msa0647490:CDS |
| GGCAAACTCAATGTTGATCA+AGG | 0.467889 | 4_3:+53619865 | Msa0647490:CDS |
| TCAATGCGAAGTATCACAAT+AGG | 0.478613 | 4_3:-53619724 | None:intergenic |
| CCAGCACTGCTTTCTGAACA+TGG | 0.482659 | 4_3:+53620191 | Msa0647490:CDS |
| GAACCATAAGTTTCAAGAGT+TGG | 0.484496 | 4_3:+53616882 | Msa0647490:CDS |
| TATGCTGTTTCAGCAGGGGT+TGG | 0.486278 | 4_3:-53620928 | None:intergenic |
| GTTGGTGACATGAAAAGAGC+AGG | 0.499152 | 4_3:+53621140 | Msa0647490:three_prime_UTR |
| AGTATTATGTTGCAGTTGGA+AGG | 0.505807 | 4_3:+53620835 | Msa0647490:CDS |
| TCAGGATTAGTGCCTTTAGC+AGG | 0.506144 | 4_3:-53616982 | None:intergenic |
| AATGTGGAAGCTTTGAGGCT+AGG | 0.506677 | 4_3:+53621082 | Msa0647490:three_prime_UTR |
| TCTAAGTATGTATATGATGA+TGG | 0.508582 | 4_3:+53620971 | Msa0647490:three_prime_UTR |
| GTTCTCTCAGACATTCTGTT+GGG | 0.508617 | 4_3:+53619676 | Msa0647490:CDS |
| CCTACGCGTGGCGCTGGACA+CGG | 0.510860 | 4_3:+53620555 | Msa0647490:CDS |
| GGGGAGTATTATGTTGCAGT+TGG | 0.521383 | 4_3:+53620831 | Msa0647490:CDS |
| CCATGTTCAGAAAGCAGTGC+TGG | 0.523999 | 4_3:-53620191 | None:intergenic |
| GGTTCTCTCAGACATTCTGT+TGG | 0.534972 | 4_3:+53619675 | Msa0647490:CDS |
| TCACTATGAGCAACTATGAC+AGG | 0.535403 | 4_3:-53620305 | None:intergenic |
| AACGCAGTAGAAGTTCTAGA+TGG | 0.537332 | 4_3:+53616808 | Msa0647490:CDS |
| GATCTTCTCGAGTTTCTTAG+CGG | 0.539300 | 4_3:+53619754 | Msa0647490:CDS |
| AGTCAAATGTGGAAGCTTTG+AGG | 0.542135 | 4_3:+53621077 | Msa0647490:three_prime_UTR |
| GAAAGCACCTTTGATGGAAC+TGG | 0.550777 | 4_3:+53620326 | Msa0647490:CDS |
| CAAATAAACAAGCCAAACTT+GGG | 0.554197 | 4_3:-53621118 | None:intergenic |
| CTTAACACCAGTTCCATCAA+AGG | 0.563267 | 4_3:-53620333 | None:intergenic |
| TCTGTCGTGCATGAGCCTCT+AGG | 0.564078 | 4_3:+53620883 | Msa0647490:CDS |
| AAATATTAACTGAAATATTG+GGG | 0.575923 | 4_3:+53620812 | Msa0647490:CDS |
| GCTACCCAAGAGTCGGATGT+AGG | 0.576491 | 4_3:-53619895 | None:intergenic |
| TAAGAAAGTGGCATTGAGTG+TGG | 0.578123 | 4_3:+53620262 | Msa0647490:CDS |
| AATTGGTGAAGTGTTTAAGA+TGG | 0.579084 | 4_3:+53620744 | Msa0647490:CDS |
| CAACAAGTTTGAATTAGACA+AGG | 0.580853 | 4_3:+53620367 | Msa0647490:CDS |
| TGGCTGCAGAAGTGTAGAAG+AGG | 0.585644 | 4_3:-53620908 | None:intergenic |
| GAGTGCAGATGATGCAAAGT+TGG | 0.589671 | 4_3:+53620768 | Msa0647490:CDS |
| GATCTTATAATTCAAGCTCT+CGG | 0.591875 | 4_3:+53619844 | Msa0647490:CDS |
| CCGTGTCCAGCGCCACGCGT+AGG | 0.593030 | 4_3:-53620555 | None:intergenic |
| AATGGAGGTAAAGCAGCAGA+TGG | 0.595006 | 4_3:-53620583 | None:intergenic |
| TGAGTTATGCTGTTTCAGCA+GGG | 0.605860 | 4_3:-53620933 | None:intergenic |
| TCCATTTGGTGCAATAGAAG+AGG | 0.608402 | 4_3:+53620600 | Msa0647490:CDS |
| TCTTCTATTGCACCAAATGG+AGG | 0.611998 | 4_3:-53620598 | None:intergenic |
| GCAAACTCAATGTTGATCAA+GGG | 0.613637 | 4_3:+53619866 | Msa0647490:CDS |
| ACCCAAGAGTCGGATGTAGG+AGG | 0.619508 | 4_3:-53619892 | None:intergenic |
| TTCTGATCACATCTATTCTG+AGG | 0.622184 | 4_3:+53617005 | Msa0647490:CDS |
| GCACCAATATCAGAAACAGC+AGG | 0.624366 | 4_3:-53616946 | None:intergenic |
| GAGTTATGCTGTTTCAGCAG+GGG | 0.632609 | 4_3:-53620932 | None:intergenic |
| GTGAATCACAAGAGTCACAA+TGG | 0.639154 | 4_3:+53616744 | Msa0647490:exon |
| ACAAGAGTCACAATGGAGAG+TGG | 0.640659 | 4_3:+53616751 | Msa0647490:exon |
| GTAGGTTATCAGCAACATTG+TGG | 0.646541 | 4_3:+53620166 | Msa0647490:intron |
| ATCGAAGGATTACCTACGCG+TGG | 0.650320 | 4_3:+53620543 | Msa0647490:CDS |
| GAGCAAGACTGAGTTCAAAG+AGG | 0.651775 | 4_3:+53619654 | Msa0647490:CDS |
| CAGCACTGCTTTCTGAACAT+GGG | 0.657052 | 4_3:+53620192 | Msa0647490:CDS |
| ACTATTGGCTACCCAAGAGT+CGG | 0.657759 | 4_3:-53619902 | None:intergenic |
| GAGTTGGATAGAGATAAAGA+TGG | 0.666648 | 4_3:+53616898 | Msa0647490:CDS |
| GTATTGAATGAATTCACACA+TGG | 0.667218 | 4_3:+53619616 | Msa0647490:CDS |
| TGTGGAAGCTTTGAGGCTAG+GGG | 0.680298 | 4_3:+53621084 | Msa0647490:three_prime_UTR |
| AGTGTAGAAGAGGAGCCTAG+AGG | 0.702434 | 4_3:-53620898 | None:intergenic |
| ACGAGTTAAAGTGATCAATG+AGG | 0.727587 | 4_3:-53616687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTTCAAATTATTAA+TGG | - | chr4_3:53617259-53617278 | None:intergenic | 10.0% |
| !! | AAAATATTAACTGAAATATT+GGG | + | chr4_3:53620811-53620830 | Msa0647490:CDS | 10.0% |
| !! | TTATTCTCTTAATTATATAA+TGG | + | chr4_3:53621168-53621187 | Msa0647490:three_prime_UTR | 10.0% |
| !! | ATACAGTAAATTACTATAAT+CGG | + | chr4_3:53617485-53617504 | Msa0647490:intron | 15.0% |
| !! | TTATCCATATCTATTAAAAT+AGG | + | chr4_3:53617747-53617766 | Msa0647490:intron | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | - | chr4_3:53618278-53618297 | None:intergenic | 15.0% |
| !! | TTATTCAACCATAAATTATA+TGG | + | chr4_3:53618786-53618805 | Msa0647490:intron | 15.0% |
| !! | AATTAACATATTAACTCTTT+AGG | + | chr4_3:53619594-53619613 | Msa0647490:intron | 15.0% |
| !!! | ATAGTTTCAATTTTTTTACA+TGG | + | chr4_3:53620015-53620034 | Msa0647490:intron | 15.0% |
| !!! | TAGTTTCAATTTTTTTACAT+GGG | + | chr4_3:53620016-53620035 | Msa0647490:intron | 15.0% |
| !!! | ACTATATAACAATTTTTTTG+TGG | + | chr4_3:53620127-53620146 | Msa0647490:intron | 15.0% |
| !!! | ATTTTTCCATTTTTATCTTT+AGG | - | chr4_3:53620523-53620542 | None:intergenic | 15.0% |
| !! | GAAAATATTAACTGAAATAT+TGG | + | chr4_3:53620810-53620829 | Msa0647490:CDS | 15.0% |
| !! | AAATATTAACTGAAATATTG+GGG | + | chr4_3:53620812-53620831 | Msa0647490:CDS | 15.0% |
| !!! | AAATATTTTATTATAGTCAC+TGG | - | chr4_3:53621010-53621029 | None:intergenic | 15.0% |
| !!! | AAACCAAACTGAATATTTTT+AGG | + | chr4_3:53616585-53616604 | Msa0647490:five_prime_UTR | 20.0% |
| !! | CATAATATAATTATACGTGT+TGG | + | chr4_3:53617279-53617298 | Msa0647490:intron | 20.0% |
| !! | ATTCATCATATTATTTGTTC+TGG | + | chr4_3:53617529-53617548 | Msa0647490:intron | 20.0% |
| !! | AATAACAAAACAACAAACAT+TGG | - | chr4_3:53617557-53617576 | None:intergenic | 20.0% |
| !! | TGTTTATAATACACACAAAT+AGG | - | chr4_3:53617698-53617717 | None:intergenic | 20.0% |
| !! | TGTGTGTATTATAAACAATT+TGG | + | chr4_3:53617701-53617720 | Msa0647490:intron | 20.0% |
| !! | TGTATTATAAACAATTTGGT+CGG | + | chr4_3:53617705-53617724 | Msa0647490:intron | 20.0% |
| !!! | CAAACCTATTTTAATAGATA+TGG | - | chr4_3:53617754-53617773 | None:intergenic | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | - | chr4_3:53618187-53618206 | None:intergenic | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | - | chr4_3:53618188-53618207 | None:intergenic | 20.0% |
| !! | TATATATTTGGTACATAGTT+AGG | - | chr4_3:53618918-53618937 | None:intergenic | 20.0% |
| !! | TTATTGCTCGTTTATATATT+TGG | - | chr4_3:53618930-53618949 | None:intergenic | 20.0% |
| !!! | CAACTTCTATATTTTTTATC+TGG | - | chr4_3:53618984-53619003 | None:intergenic | 20.0% |
| !!! | TTTAGAATATCAATTAGAGT+TGG | - | chr4_3:53619103-53619122 | None:intergenic | 20.0% |
| !! | ATATTCACAATATATAGTTG+AGG | + | chr4_3:53619143-53619162 | Msa0647490:intron | 20.0% |
| !! | TATTCACAATATATAGTTGA+GGG | + | chr4_3:53619144-53619163 | Msa0647490:intron | 20.0% |
| !! | AAAACGTAGTATGTTAAATT+TGG | - | chr4_3:53619264-53619283 | None:intergenic | 20.0% |
| !!! | TTATTTCTAGTATGAACTAT+TGG | - | chr4_3:53619920-53619939 | None:intergenic | 20.0% |
| !! | ACCAATTAATTAATCTATGA+TGG | + | chr4_3:53620463-53620482 | Msa0647490:intron | 20.0% |
| !! | CCAATTAATTAATCTATGAT+GGG | + | chr4_3:53620464-53620483 | Msa0647490:intron | 20.0% |
| !! | TAAAAATGGAAAAATATCGA+AGG | + | chr4_3:53620528-53620547 | Msa0647490:CDS | 20.0% |
| !! | AATATTTGTGCATGTATATT+TGG | + | chr4_3:53620702-53620721 | Msa0647490:intron | 20.0% |
| ! | ACTCCTAAAAATATTCAGTT+TGG | - | chr4_3:53616591-53616610 | None:intergenic | 25.0% |
| !!! | TCTAGATGGTTCTAATATTA+TGG | + | chr4_3:53616822-53616841 | Msa0647490:CDS | 25.0% |
| ! | TCTAATATTATGGAGTTAGT+TGG | + | chr4_3:53616832-53616851 | Msa0647490:CDS | 25.0% |
| ! | TTTCTAATACTCTTATCATG+TGG | + | chr4_3:53617450-53617469 | Msa0647490:intron | 25.0% |
| !!! | CACTGTAGAAAATTGATTTT+GGG | - | chr4_3:53617978-53617997 | None:intergenic | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr4_3:53618219-53618238 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr4_3:53618322-53618341 | None:intergenic | 25.0% |
| ! | TGTATATGGAGAAAAGAAAA+TGG | - | chr4_3:53618556-53618575 | None:intergenic | 25.0% |
| ! | TATGGTTGAATAATAATAGC+AGG | - | chr4_3:53618779-53618798 | None:intergenic | 25.0% |
| !!! | TAAAGGAGATTTTTTGTGTA+TGG | + | chr4_3:53618863-53618882 | Msa0647490:intron | 25.0% |
| ! | ACAAAATCATAAACGACTTA+TGG | + | chr4_3:53619315-53619334 | Msa0647490:intron | 25.0% |
| !! | ATTCAAATTGACTTAATGTG+TGG | - | chr4_3:53619410-53619429 | None:intergenic | 25.0% |
| ! | TGATTCAATTTGAGAGAATA+TGG | - | chr4_3:53619806-53619825 | None:intergenic | 25.0% |
| ! | AGACAGATATAAAATGAAAG+TGG | + | chr4_3:53619962-53619981 | Msa0647490:intron | 25.0% |
| ! | CTACACAAAAATTTAGAAAC+AGG | - | chr4_3:53620060-53620079 | None:intergenic | 25.0% |
| !!! | CTGTTTCTAAATTTTTGTGT+AGG | + | chr4_3:53620058-53620077 | Msa0647490:intron | 25.0% |
| ! | AAAAATATCTCTTGAGAAAC+AGG | - | chr4_3:53620233-53620252 | None:intergenic | 25.0% |
| !! | TGTTTCTCAAGAGATATTTT+TGG | + | chr4_3:53620232-53620251 | Msa0647490:CDS | 25.0% |
| ! | CCCATCATAGATTAATTAAT+TGG | - | chr4_3:53620467-53620486 | None:intergenic | 25.0% |
| ! | TCTAAGTATGTATATGATGA+TGG | + | chr4_3:53620971-53620990 | Msa0647490:three_prime_UTR | 25.0% |
| TGTTGATCTTCCTTTATTGA+TGG | - | chr4_3:53616523-53616542 | None:intergenic | 30.0% | |
| AGAGTAACAAAGAAAAAGAG+AGG | + | chr4_3:53616722-53616741 | Msa0647490:five_prime_UTR | 30.0% | |
| TATCCAACTCTTGAAACTTA+TGG | - | chr4_3:53616888-53616907 | None:intergenic | 30.0% | |
| TGCCATAGATTGTTTGAATT+TGG | + | chr4_3:53617109-53617128 | Msa0647490:intron | 30.0% | |
| TGCCAAATTCAAACAATCTA+TGG | - | chr4_3:53617114-53617133 | None:intergenic | 30.0% | |
| TTCAGCTAAATAAGAACCTA+TGG | + | chr4_3:53617179-53617198 | Msa0647490:intron | 30.0% | |
| AAATAAGAACCTATGGAACA+CGG | + | chr4_3:53617186-53617205 | Msa0647490:intron | 30.0% | |
| GTTCTTAATACTATGAAGCA+CGG | - | chr4_3:53617353-53617372 | None:intergenic | 30.0% | |
| ATTATAAACAATTTGGTCGG+TGG | + | chr4_3:53617708-53617727 | Msa0647490:intron | 30.0% | |
| !! | GCACTGTAGAAAATTGATTT+TGG | - | chr4_3:53617979-53617998 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr4_3:53618001-53618020 | None:intergenic | 30.0% |
| ATATTCAAAGCTGAACCAAA+CGG | + | chr4_3:53618411-53618430 | Msa0647490:intron | 30.0% | |
| ! | AGTTTTCTCAAACATTGTAG+TGG | + | chr4_3:53618440-53618459 | Msa0647490:intron | 30.0% |
| ! | TCTTTTCTCCATATACAATG+TGG | + | chr4_3:53618559-53618578 | Msa0647490:intron | 30.0% |
| ! | GATCAGGCTCTAATATATAA+TGG | + | chr4_3:53618625-53618644 | Msa0647490:intron | 30.0% |
| AACCATAAATTATATGGTCC+TGG | + | chr4_3:53618792-53618811 | Msa0647490:intron | 30.0% | |
| AACCAGGACCATATAATTTA+TGG | - | chr4_3:53618797-53618816 | None:intergenic | 30.0% | |
| TAGTAAAACATAAGCTACCT+TGG | + | chr4_3:53618955-53618974 | Msa0647490:intron | 30.0% | |
| !!! | TATTTTTTATCTGGTGACCA+AGG | - | chr4_3:53618975-53618994 | None:intergenic | 30.0% |
| ! | TAATCACTCTCTAAAAGTGT+TGG | - | chr4_3:53619233-53619252 | None:intergenic | 30.0% |
| ACGTAGTATGTTAAATTTGG+TGG | - | chr4_3:53619261-53619280 | None:intergenic | 30.0% | |
| TCATAAACGACTTATGGTAT+AGG | + | chr4_3:53619321-53619340 | Msa0647490:intron | 30.0% | |
| GACATTATATTGAACCAATG+AGG | + | chr4_3:53619543-53619562 | Msa0647490:intron | 30.0% | |
| GTATTGAATGAATTCACACA+TGG | + | chr4_3:53619616-53619635 | Msa0647490:CDS | 30.0% | |
| !! | ACTATTTCTGGTTCATAACT+TGG | - | chr4_3:53619781-53619800 | None:intergenic | 30.0% |
| GAGAATATGGAAACTATTTC+TGG | - | chr4_3:53619793-53619812 | None:intergenic | 30.0% | |
| GATCTTATAATTCAAGCTCT+CGG | + | chr4_3:53619844-53619863 | Msa0647490:CDS | 30.0% | |
| GAAACAGGACAAAATGAAAT+TGG | - | chr4_3:53620045-53620064 | None:intergenic | 30.0% | |
| !!! | TTCTCAAGAGATATTTTTGG+AGG | + | chr4_3:53620235-53620254 | Msa0647490:CDS | 30.0% |
| TTTGGAGGAATTTAAGAAAG+TGG | + | chr4_3:53620250-53620269 | Msa0647490:CDS | 30.0% | |
| CTTGTCTAATTCAAACTTGT+TGG | - | chr4_3:53620369-53620388 | None:intergenic | 30.0% | |
| CAACAAGTTTGAATTAGACA+AGG | + | chr4_3:53620367-53620386 | Msa0647490:CDS | 30.0% | |
| AAGTTTGAATTAGACAAGGT+TGG | + | chr4_3:53620371-53620390 | Msa0647490:intron | 30.0% | |
| !!! | AGGTTGGTCTATTTTCATTT+TGG | + | chr4_3:53620387-53620406 | Msa0647490:intron | 30.0% |
| ACCTTGCCTAAAGATAAAAA+TGG | + | chr4_3:53620514-53620533 | Msa0647490:CDS | 30.0% | |
| !! | TCCATTTTTATCTTTAGGCA+AGG | - | chr4_3:53620518-53620537 | None:intergenic | 30.0% |
| TGTATATTTGGTTATGCAGA+TGG | + | chr4_3:53620714-53620733 | Msa0647490:intron | 30.0% | |
| ! | AATTGGTGAAGTGTTTAAGA+TGG | + | chr4_3:53620744-53620763 | Msa0647490:CDS | 30.0% |
| CAAATAAACAAGCCAAACTT+GGG | - | chr4_3:53621121-53621140 | None:intergenic | 30.0% | |
| ACAAATAAACAAGCCAAACT+TGG | - | chr4_3:53621122-53621141 | None:intergenic | 30.0% | |
| !! | AGTTTGGCTTGTTTATTTGT+TGG | + | chr4_3:53621122-53621141 | Msa0647490:three_prime_UTR | 30.0% |
| ACGAGTTAAAGTGATCAATG+AGG | - | chr4_3:53616690-53616709 | None:intergenic | 35.0% | |
| GAACCATAAGTTTCAAGAGT+TGG | + | chr4_3:53616882-53616901 | Msa0647490:CDS | 35.0% | |
| GAGTTGGATAGAGATAAAGA+TGG | + | chr4_3:53616898-53616917 | Msa0647490:CDS | 35.0% | |
| GAATAGATGTGATCAGAATC+AGG | - | chr4_3:53617003-53617022 | None:intergenic | 35.0% | |
| TTCTGATCACATCTATTCTG+AGG | + | chr4_3:53617005-53617024 | Msa0647490:CDS | 35.0% | |
| TGTTGGTATTGTCTAAGTGT+CGG | + | chr4_3:53617296-53617315 | Msa0647490:intron | 35.0% | |
| !! | AATTCGTAGCCTTATCTTCT+AGG | - | chr4_3:53617419-53617438 | None:intergenic | 35.0% |
| CTAATACTCTTATCATGTGG+TGG | + | chr4_3:53617453-53617472 | Msa0647490:intron | 35.0% | |
| ACTAGTACTATGTCTGTTTG+TGG | + | chr4_3:53617619-53617638 | Msa0647490:intron | 35.0% | |
| AGATAGATCATGATGCTTCT+AGG | - | chr4_3:53617653-53617672 | None:intergenic | 35.0% | |
| CCATAAACATGGAAAACTCA+CGG | - | chr4_3:53617871-53617890 | None:intergenic | 35.0% | |
| CCATGTTTATGGCAAAATCA+CGG | + | chr4_3:53617879-53617898 | Msa0647490:intron | 35.0% | |
| !! | CAAAATCACGGTTATTTTCC+AGG | + | chr4_3:53617891-53617910 | Msa0647490:intron | 35.0% |
| AAATAGAACCTTGGTTTCGT+AGG | + | chr4_3:53617917-53617936 | Msa0647490:intron | 35.0% | |
| AATAGAACCTTGGTTTCGTA+GGG | + | chr4_3:53617918-53617937 | Msa0647490:intron | 35.0% | |
| !! | TGAACCAAACACGTTGTTTT+TGG | - | chr4_3:53618017-53618036 | None:intergenic | 35.0% |
| !! | TCATGGATAATTGCTTTTGG+AGG | - | chr4_3:53618061-53618080 | None:intergenic | 35.0% |
| ! | GCTTCATGGATAATTGCTTT+TGG | - | chr4_3:53618064-53618083 | None:intergenic | 35.0% |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr4_3:53618094-53618113 | None:intergenic | 35.0% |
| AAACCTATACACGTTGTTGA+AGG | - | chr4_3:53618125-53618144 | None:intergenic | 35.0% | |
| TATTCAAAGCTGAACCAAAC+GGG | + | chr4_3:53618412-53618431 | Msa0647490:intron | 35.0% | |
| ! | AAACATTGTAGTGGAAGCAT+GGG | + | chr4_3:53618449-53618468 | Msa0647490:intron | 35.0% |
| TCCATATACAATGTGGAATC+TGG | + | chr4_3:53618566-53618585 | Msa0647490:intron | 35.0% | |
| CCATATACAATGTGGAATCT+GGG | + | chr4_3:53618567-53618586 | Msa0647490:intron | 35.0% | |
| CATATACAATGTGGAATCTG+GGG | + | chr4_3:53618568-53618587 | Msa0647490:intron | 35.0% | |
| ATATACAATGTGGAATCTGG+GGG | + | chr4_3:53618569-53618588 | Msa0647490:intron | 35.0% | |
| ATATATTAGAGCCTGATCAG+AGG | - | chr4_3:53618623-53618642 | None:intergenic | 35.0% | |
| ATGCACACCAAAATCATAGT+AGG | + | chr4_3:53619063-53619082 | Msa0647490:intron | 35.0% | |
| ! | CTCTAGAAAGAGCTATCAAA+GGG | - | chr4_3:53619201-53619220 | None:intergenic | 35.0% |
| ! | ACTCTAGAAAGAGCTATCAA+AGG | - | chr4_3:53619202-53619221 | None:intergenic | 35.0% |
| ACAGATTCTTATCAGCACTA+AGG | - | chr4_3:53619508-53619527 | None:intergenic | 35.0% | |
| ! | GTCATTTCTTGTTTCCTCAT+TGG | - | chr4_3:53619560-53619579 | None:intergenic | 35.0% |
| ! | TCAATGCGAAGTATCACAAT+AGG | - | chr4_3:53619727-53619746 | None:intergenic | 35.0% |
| ATTGTGATACTTCGCATTGA+CGG | + | chr4_3:53619727-53619746 | Msa0647490:CDS | 35.0% | |
| ! | AGATCGTGAAGAGATTTTTG+AGG | - | chr4_3:53619829-53619848 | None:intergenic | 35.0% |
| GCAAACTCAATGTTGATCAA+GGG | + | chr4_3:53619866-53619885 | Msa0647490:CDS | 35.0% | |
| TTTGGTTATGCAGATGGATA+AGG | + | chr4_3:53620720-53620739 | Msa0647490:intron | 35.0% | |
| ATGCAGATGGATAAGGTAAT+TGG | + | chr4_3:53620727-53620746 | Msa0647490:intron | 35.0% | |
| AGTATTATGTTGCAGTTGGA+AGG | + | chr4_3:53620835-53620854 | Msa0647490:CDS | 35.0% | |
| ! | GAATTTGAAGCAACTGCTAT+AGG | - | chr4_3:53620865-53620884 | None:intergenic | 35.0% |
| GTGAATCACAAGAGTCACAA+TGG | + | chr4_3:53616744-53616763 | Msa0647490:exon | 40.0% | |
| GGTTCAGGTAAGAGAAAAAG+TGG | + | chr4_3:53616772-53616791 | Msa0647490:CDS | 40.0% | |
| TCAGGTAAGAGAAAAAGTGG+TGG | + | chr4_3:53616775-53616794 | Msa0647490:CDS | 40.0% | |
| !! | AACGCAGTAGAAGTTCTAGA+TGG | + | chr4_3:53616808-53616827 | Msa0647490:CDS | 40.0% |
| !! | CAACCTGCTGTTTCTGATAT+TGG | + | chr4_3:53616943-53616962 | Msa0647490:CDS | 40.0% |
| TGTTTGTATCCGTGTTCCAT+AGG | - | chr4_3:53617198-53617217 | None:intergenic | 40.0% | |
| ! | ACCGACTTACCTAGAAGATA+AGG | + | chr4_3:53617407-53617426 | Msa0647490:intron | 40.0% |
| GCCTTATCTTCTAGGTAAGT+CGG | - | chr4_3:53617411-53617430 | None:intergenic | 40.0% | |
| ! | CCGTGAGTTTTCCATGTTTA+TGG | + | chr4_3:53617868-53617887 | Msa0647490:intron | 40.0% |
| ! | CCGTGATTTTGCCATAAACA+TGG | - | chr4_3:53617882-53617901 | None:intergenic | 40.0% |
| TCCAGGTTCAAATAGAACCT+TGG | + | chr4_3:53617908-53617927 | Msa0647490:intron | 40.0% | |
| ACCAAGGTTCTATTTGAACC+TGG | - | chr4_3:53617912-53617931 | None:intergenic | 40.0% | |
| TCTCAGAAGCCAAACTAAAC+AGG | - | chr4_3:53617944-53617963 | None:intergenic | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr4_3:53618010-53618029 | Msa0647490:intron | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr4_3:53618078-53618097 | None:intergenic | 40.0% | |
| TCTCCTTCAACAACGTGTAT+AGG | + | chr4_3:53618119-53618138 | Msa0647490:intron | 40.0% | |
| ! | CAAACATTGTAGTGGAAGCA+TGG | + | chr4_3:53618448-53618467 | Msa0647490:intron | 40.0% |
| CCCAGATTCCACATTGTATA+TGG | - | chr4_3:53618570-53618589 | None:intergenic | 40.0% | |
| !!! | GGGGAATTTTTTGTTGCTGT+TGG | + | chr4_3:53618588-53618607 | Msa0647490:intron | 40.0% |
| GGTATTATGAACCTCTGATC+AGG | + | chr4_3:53618609-53618628 | Msa0647490:intron | 40.0% | |
| TAGTACTCAGTACTCAGACA+AGG | + | chr4_3:53618704-53618723 | Msa0647490:intron | 40.0% | |
| AATTATATGGTCCTGGTTGC+TGG | + | chr4_3:53618799-53618818 | Msa0647490:intron | 40.0% | |
| TCCTAAGGCTATGTTTCTTG+CGG | + | chr4_3:53618828-53618847 | Msa0647490:intron | 40.0% | |
| ! | GCTCACACCTACTATGATTT+TGG | - | chr4_3:53619073-53619092 | None:intergenic | 40.0% |
| GACTTATGGTATAGGACACA+TGG | + | chr4_3:53619329-53619348 | Msa0647490:intron | 40.0% | |
| GTTCTCTCAGACATTCTGTT+GGG | + | chr4_3:53619676-53619695 | Msa0647490:CDS | 40.0% | |
| GATCTTCTCGAGTTTCTTAG+CGG | + | chr4_3:53619754-53619773 | Msa0647490:CDS | 40.0% | |
| GGCAAACTCAATGTTGATCA+AGG | + | chr4_3:53619865-53619884 | Msa0647490:CDS | 40.0% | |
| GGCTTGATCATTCTTTGTGT+AGG | + | chr4_3:53620148-53620167 | Msa0647490:intron | 40.0% | |
| GTAGGTTATCAGCAACATTG+TGG | + | chr4_3:53620166-53620185 | Msa0647490:intron | 40.0% | |
| ! | TAAGAAAGTGGCATTGAGTG+TGG | + | chr4_3:53620262-53620281 | Msa0647490:CDS | 40.0% |
| TCACTATGAGCAACTATGAC+AGG | - | chr4_3:53620308-53620327 | None:intergenic | 40.0% | |
| !! | CATAGTGAAAGCACCTTTGA+TGG | + | chr4_3:53620320-53620339 | Msa0647490:CDS | 40.0% |
| CTTAACACCAGTTCCATCAA+AGG | - | chr4_3:53620336-53620355 | None:intergenic | 40.0% | |
| TCTTCTATTGCACCAAATGG+AGG | - | chr4_3:53620601-53620620 | None:intergenic | 40.0% | |
| !! | TCCATTTGGTGCAATAGAAG+AGG | + | chr4_3:53620600-53620619 | Msa0647490:CDS | 40.0% |
| ACCTCTTCTATTGCACCAAA+TGG | - | chr4_3:53620604-53620623 | None:intergenic | 40.0% | |
| !! | TGAGTTATGCTGTTTCAGCA+GGG | - | chr4_3:53620936-53620955 | None:intergenic | 40.0% |
| !! | ATGAGTTATGCTGTTTCAGC+AGG | - | chr4_3:53620937-53620956 | None:intergenic | 40.0% |
| ! | GTCTTTTGAGCAGTCAAATG+TGG | + | chr4_3:53621066-53621085 | Msa0647490:three_prime_UTR | 40.0% |
| AGTCAAATGTGGAAGCTTTG+AGG | + | chr4_3:53621077-53621096 | Msa0647490:three_prime_UTR | 40.0% | |
| ACAAGAGTCACAATGGAGAG+TGG | + | chr4_3:53616751-53616770 | Msa0647490:exon | 45.0% | |
| GGTAAGAGAAAAAGTGGTGG+TGG | + | chr4_3:53616778-53616797 | Msa0647490:CDS | 45.0% | |
| !! | AAGAGAAAAAGTGGTGGTGG+TGG | + | chr4_3:53616781-53616800 | Msa0647490:CDS | 45.0% |
| GCACCAATATCAGAAACAGC+AGG | - | chr4_3:53616949-53616968 | None:intergenic | 45.0% | |
| !! | TCTGATATTGGTGCTGCTCT+TGG | + | chr4_3:53616955-53616974 | Msa0647490:CDS | 45.0% |
| GCTCTTGGTTTACCTGCTAA+AGG | + | chr4_3:53616970-53616989 | Msa0647490:CDS | 45.0% | |
| ! | TCAGGATTAGTGCCTTTAGC+AGG | - | chr4_3:53616985-53617004 | None:intergenic | 45.0% |
| ATCAGTATCCATGTCGTGTG+TGG | - | chr4_3:53617227-53617246 | None:intergenic | 45.0% | |
| ! | CTATGTCTGTTTGTGGACTG+TGG | + | chr4_3:53617626-53617645 | Msa0647490:intron | 45.0% |
| AAACAATTTGGTCGGTGGTG+TGG | + | chr4_3:53617713-53617732 | Msa0647490:intron | 45.0% | |
| AACAATTTGGTCGGTGGTGT+GGG | + | chr4_3:53617714-53617733 | Msa0647490:intron | 45.0% | |
| ACATACACTTAGCGTCCGTT+TGG | + | chr4_3:53617835-53617854 | Msa0647490:intron | 45.0% | |
| TTCGTAGGGCCTGTTTAGTT+TGG | + | chr4_3:53617932-53617951 | Msa0647490:intron | 45.0% | |
| CCTAAGGCTATGTTTCTTGC+GGG | + | chr4_3:53618829-53618848 | Msa0647490:intron | 45.0% | |
| CTAAGGCTATGTTTCTTGCG+GGG | + | chr4_3:53618830-53618849 | Msa0647490:intron | 45.0% | |
| TGCGGGGACAAGCAAATTAA+AGG | + | chr4_3:53618846-53618865 | Msa0647490:intron | 45.0% | |
| GAGCAAGACTGAGTTCAAAG+AGG | + | chr4_3:53619654-53619673 | Msa0647490:CDS | 45.0% | |
| GGTTCTCTCAGACATTCTGT+TGG | + | chr4_3:53619675-53619694 | Msa0647490:CDS | 45.0% | |
| ! | ACTATTGGCTACCCAAGAGT+CGG | - | chr4_3:53619905-53619924 | None:intergenic | 45.0% |
| CAGCACTGCTTTCTGAACAT+GGG | + | chr4_3:53620192-53620211 | Msa0647490:CDS | 45.0% | |
| GAGTGTGGCTAATCGTCTTA+AGG | + | chr4_3:53620277-53620296 | Msa0647490:CDS | 45.0% | |
| !! | GAAAGCACCTTTGATGGAAC+TGG | + | chr4_3:53620326-53620345 | Msa0647490:CDS | 45.0% |
| AATGGAGGTAAAGCAGCAGA+TGG | - | chr4_3:53620586-53620605 | None:intergenic | 45.0% | |
| !! | TCTGCTGCTTTACCTCCATT+TGG | + | chr4_3:53620586-53620605 | Msa0647490:CDS | 45.0% |
| GAGTGCAGATGATGCAAAGT+TGG | + | chr4_3:53620768-53620787 | Msa0647490:CDS | 45.0% | |
| !! | GGGGAGTATTATGTTGCAGT+TGG | + | chr4_3:53620831-53620850 | Msa0647490:CDS | 45.0% |
| !! | GAGTTATGCTGTTTCAGCAG+GGG | - | chr4_3:53620935-53620954 | None:intergenic | 45.0% |
| !! | AATGTGGAAGCTTTGAGGCT+AGG | + | chr4_3:53621082-53621101 | Msa0647490:three_prime_UTR | 45.0% |
| !! | ATGTGGAAGCTTTGAGGCTA+GGG | + | chr4_3:53621083-53621102 | Msa0647490:three_prime_UTR | 45.0% |
| !! | GTTGGTGACATGAAAAGAGC+AGG | + | chr4_3:53621140-53621159 | Msa0647490:three_prime_UTR | 45.0% |
| GTCACAATGGAGAGTGGTTC+AGG | + | chr4_3:53616757-53616776 | Msa0647490:exon | 50.0% | |
| !! | AGAAAAAGTGGTGGTGGTGG+TGG | + | chr4_3:53616784-53616803 | Msa0647490:CDS | 50.0% |
| CACTTAGCGTCCGTTTGGTT+TGG | + | chr4_3:53617840-53617859 | Msa0647490:intron | 50.0% | |
| CACGGTGCAACCAAACCAAA+CGG | - | chr4_3:53617853-53617872 | None:intergenic | 50.0% | |
| AAACAGGCCCTACGAAACCA+AGG | - | chr4_3:53617928-53617947 | None:intergenic | 50.0% | |
| GAGAAAACTACGTGCCCGTT+TGG | - | chr4_3:53618429-53618448 | None:intergenic | 50.0% | |
| ! | CATTGTAGTGGAAGCATGGG+TGG | + | chr4_3:53618452-53618471 | Msa0647490:intron | 50.0% |
| CCCGCAAGAAACATAGCCTT+AGG | - | chr4_3:53618832-53618851 | None:intergenic | 50.0% | |
| CTCAGACATTCTGTTGGGCA+TGG | + | chr4_3:53619681-53619700 | Msa0647490:CDS | 50.0% | |
| TTCCTCCTACATCCGACTCT+TGG | + | chr4_3:53619890-53619909 | Msa0647490:CDS | 50.0% | |
| TCCTCCTACATCCGACTCTT+GGG | + | chr4_3:53619891-53619910 | Msa0647490:CDS | 50.0% | |
| CCATGTTCAGAAAGCAGTGC+TGG | - | chr4_3:53620194-53620213 | None:intergenic | 50.0% | |
| CCAGCACTGCTTTCTGAACA+TGG | + | chr4_3:53620191-53620210 | Msa0647490:CDS | 50.0% | |
| ATCGAAGGATTACCTACGCG+TGG | + | chr4_3:53620543-53620562 | Msa0647490:CDS | 50.0% | |
| AGTGTAGAAGAGGAGCCTAG+AGG | - | chr4_3:53620901-53620920 | None:intergenic | 50.0% | |
| ! | TGGCTGCAGAAGTGTAGAAG+AGG | - | chr4_3:53620911-53620930 | None:intergenic | 50.0% |
| !! | TATGCTGTTTCAGCAGGGGT+TGG | - | chr4_3:53620931-53620950 | None:intergenic | 50.0% |
| !! | TGTGGAAGCTTTGAGGCTAG+GGG | + | chr4_3:53621084-53621103 | Msa0647490:three_prime_UTR | 50.0% |
| GAGACTCAGTTGCCCAAGTT+TGG | + | chr4_3:53621106-53621125 | Msa0647490:three_prime_UTR | 50.0% | |
| CACGAACACCACACACGACA+TGG | + | chr4_3:53617216-53617235 | Msa0647490:intron | 55.0% | |
| ATGAAGCACGGACACTGCGT+GGG | - | chr4_3:53617341-53617360 | None:intergenic | 55.0% | |
| TATGAAGCACGGACACTGCG+TGG | - | chr4_3:53617342-53617361 | None:intergenic | 55.0% | |
| TAGGAATGCAGCCAGCAACC+AGG | - | chr4_3:53618813-53618832 | None:intergenic | 55.0% | |
| ! | GGTTGCTGGCTGCATTCCTA+AGG | + | chr4_3:53618813-53618832 | Msa0647490:intron | 55.0% |
| ATTCTGTTGGGCATGGCTGC+TGG | + | chr4_3:53619688-53619707 | Msa0647490:CDS | 55.0% | |
| ACCCAAGAGTCGGATGTAGG+AGG | - | chr4_3:53619895-53619914 | None:intergenic | 55.0% | |
| GCTACCCAAGAGTCGGATGT+AGG | - | chr4_3:53619898-53619917 | None:intergenic | 55.0% | |
| TCTGTCGTGCATGAGCCTCT+AGG | + | chr4_3:53620883-53620902 | Msa0647490:CDS | 55.0% | |
| AGCATGGGTGGACGTGCGTT+TGG | + | chr4_3:53618464-53618483 | Msa0647490:intron | 60.0% | |
| GGATTACCTACGCGTGGCGC+TGG | + | chr4_3:53620549-53620568 | Msa0647490:CDS | 65.0% | |
| ! | CCTACGCGTGGCGCTGGACA+CGG | + | chr4_3:53620555-53620574 | Msa0647490:CDS | 70.0% |
| CCGTGTCCAGCGCCACGCGT+AGG | - | chr4_3:53620558-53620577 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53616513 | 53621201 | 53616513 | ID=Msa0647490;Name=Msa0647490 |
| chr4_3 | mRNA | 53616513 | 53621201 | 53616513 | ID=Msa0647490-mRNA-1;Parent=Msa0647490;Name=Msa0647490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=250|1|1|1|1|1|5|250|375 |
| chr4_3 | exon | 53616513 | 53617026 | 53616513 | ID=Msa0647490-mRNA-1:exon:13451;Parent=Msa0647490-mRNA-1 |
| chr4_3 | exon | 53619616 | 53619912 | 53619616 | ID=Msa0647490-mRNA-1:exon:13452;Parent=Msa0647490-mRNA-1 |
| chr4_3 | exon | 53620170 | 53620388 | 53620170 | ID=Msa0647490-mRNA-1:exon:13453;Parent=Msa0647490-mRNA-1 |
| chr4_3 | exon | 53620493 | 53620621 | 53620493 | ID=Msa0647490-mRNA-1:exon:13454;Parent=Msa0647490-mRNA-1 |
| chr4_3 | exon | 53620733 | 53621201 | 53620733 | ID=Msa0647490-mRNA-1:exon:13455;Parent=Msa0647490-mRNA-1 |
| chr4_3 | five_prime_UTR | 53616513 | 53616762 | 53616513 | ID=Msa0647490-mRNA-1:five_prime_utr;Parent=Msa0647490-mRNA-1 |
| chr4_3 | CDS | 53616763 | 53617026 | 53616763 | ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1 |
| chr4_3 | CDS | 53619616 | 53619912 | 53619616 | ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1 |
| chr4_3 | CDS | 53620170 | 53620388 | 53620170 | ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1 |
| chr4_3 | CDS | 53620493 | 53620621 | 53620493 | ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1 |
| chr4_3 | CDS | 53620733 | 53620951 | 53620733 | ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1 |
| chr4_3 | three_prime_UTR | 53620952 | 53621201 | 53620952 | ID=Msa0647490-mRNA-1:three_prime_utr;Parent=Msa0647490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
