AlfalfaGEDB | Msa0647490

M. sativa cultivar zhongmu-4 / Msa0647490

KEGG: -
GO: -
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647490	XP_013456572.1	97.867	375	8	0	1	375	1	375	0.0	731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004980	Msa0647490	0.814287	1.663451e-51	-8.615850e-47
Msa0008410	Msa0647490	0.812780	3.567904e-51	-8.615850e-47
Msa0027580	Msa0647490	0.805555	1.261574e-49	-8.615850e-47
Msa0047980	Msa0647490	0.829536	4.872121e-55	-8.615850e-47
Msa0057140	Msa0647490	0.810035	1.408103e-50	-8.615850e-47
Msa0064350	Msa0647490	0.807374	5.216040e-50	-8.615850e-47
Msa0073670	Msa0647490	0.824018	1.012897e-53	-8.615850e-47
Msa0075340	Msa0647490	0.806401	8.373648e-50	-8.615850e-47
Msa0076000	Msa0647490	0.826877	2.131873e-54	-8.615850e-47
Msa0082280	Msa0647490	0.836846	7.364650e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647490	MtrunA17_Chr4g0038631	97.867	375	8	0	1	375	1	375	0.0	731
Msa0647490	MtrunA17_Chr3g0145431	74.114	367	84	5	7	370	4	362	0.0	538
Msa0647490	MtrunA17_Chr7g0274121	24.927	341	235	9	13	348	4	328	3.43e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647490	AT4G38810.2	68.889	360	106	4	19	374	13	370	6.38e-175	492
Msa0647490	AT4G38810.1	63.740	262	89	4	117	374	1	260	4.50e-112	328
Msa0647490	AT5G28830.1	24.731	279	192	6	84	353	54	323	2.72e-13	70.5

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Find 89 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTAACTGAAATATT+GGG	0.282504	4_3:+53620811	Msa0647490:CDS
AAATATTAACTGAAATATTG+GGG	0.575923	4_3:+53620812	Msa0647490:CDS
AACGCAGTAGAAGTTCTAGA+TGG	0.537332	4_3:+53616808	Msa0647490:CDS
AATGGAGGTAAAGCAGCAGA+TGG	0.595006	4_3:-53620583	None:intergenic
AATGTGGAAGCTTTGAGGCT+AGG	0.506677	4_3:+53621082	Msa0647490:three_prime_UTR
AATTGGTGAAGTGTTTAAGA+TGG	0.579084	4_3:+53620744	Msa0647490:CDS
ACAAATAAACAAGCCAAACT+TGG	0.397731	4_3:-53621119	None:intergenic
ACAAGAGTCACAATGGAGAG+TGG	0.640659	4_3:+53616751	Msa0647490:exon
ACCCAAGAGTCGGATGTAGG+AGG	0.619508	4_3:-53619892	None:intergenic
ACCTCTTCTATTGCACCAAA+TGG	0.461829	4_3:-53620601	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGATCTTCCTTTATTGA+TGG	-	chr4_3:53616523-53616542	None:intergenic	30.0%
AGAGTAACAAAGAAAAAGAG+AGG	+	chr4_3:53616722-53616741	Msa0647490:five_prime_UTR	30.0%
TATCCAACTCTTGAAACTTA+TGG	-	chr4_3:53616888-53616907	None:intergenic	30.0%
TGCCATAGATTGTTTGAATT+TGG	+	chr4_3:53617109-53617128	Msa0647490:intron	30.0%
TGCCAAATTCAAACAATCTA+TGG	-	chr4_3:53617114-53617133	None:intergenic	30.0%
TTCAGCTAAATAAGAACCTA+TGG	+	chr4_3:53617179-53617198	Msa0647490:intron	30.0%
AAATAAGAACCTATGGAACA+CGG	+	chr4_3:53617186-53617205	Msa0647490:intron	30.0%
GTTCTTAATACTATGAAGCA+CGG	-	chr4_3:53617353-53617372	None:intergenic	30.0%
ATTATAAACAATTTGGTCGG+TGG	+	chr4_3:53617708-53617727	Msa0647490:intron	30.0%
ATATTCAAAGCTGAACCAAA+CGG	+	chr4_3:53618411-53618430	Msa0647490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	53616513	53621201	53616513	ID=Msa0647490;Name=Msa0647490
chr4_3	mRNA	53616513	53621201	53616513	ID=Msa0647490-mRNA-1;Parent=Msa0647490;Name=Msa0647490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=250\|1\|1\|1\|1\|1\|5\|250\|375
chr4_3	exon	53616513	53617026	53616513	ID=Msa0647490-mRNA-1:exon:13451;Parent=Msa0647490-mRNA-1
chr4_3	exon	53619616	53619912	53619616	ID=Msa0647490-mRNA-1:exon:13452;Parent=Msa0647490-mRNA-1
chr4_3	exon	53620170	53620388	53620170	ID=Msa0647490-mRNA-1:exon:13453;Parent=Msa0647490-mRNA-1
chr4_3	exon	53620493	53620621	53620493	ID=Msa0647490-mRNA-1:exon:13454;Parent=Msa0647490-mRNA-1
chr4_3	exon	53620733	53621201	53620733	ID=Msa0647490-mRNA-1:exon:13455;Parent=Msa0647490-mRNA-1
chr4_3	five_prime_UTR	53616513	53616762	53616513	ID=Msa0647490-mRNA-1:five_prime_utr;Parent=Msa0647490-mRNA-1
chr4_3	CDS	53616763	53617026	53616763	ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1
chr4_3	CDS	53619616	53619912	53619616	ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1
chr4_3	CDS	53620170	53620388	53620170	ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1
chr4_3	CDS	53620493	53620621	53620493	ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1
chr4_3	CDS	53620733	53620951	53620733	ID=Msa0647490-mRNA-1:cds;Parent=Msa0647490-mRNA-1
chr4_3	three_prime_UTR	53620952	53621201	53620952	ID=Msa0647490-mRNA-1:three_prime_utr;Parent=Msa0647490-mRNA-1

Gene Sequence

>Msa0647490

ATGGAGAGTGGTTCAGGTAAGAGAAAAAGTGGTGGTGGTGGTGGAAACGCAGTAGAAGTTCTAGATGGTTCTAATATTATGGAGTTAGTTGGAAACAAAGATGTTTTCAGCAACTTTGTGAACCATAAGTTTCAAGAGTTGGATAGAGATAAAGATGGTAAACTCTCTGTGACTGAACTTCAACCTGCTGTTTCTGATATTGGTGCTGCTCTTGGTTTACCTGCTAAAGGCACTAATCCTGATTCTGATCACATCTATTCTGAGGTATTGAATGAATTCACACATGGAAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCAGACATTCTGTTGGGCATGGCTGCTGGTCTCAAACGTGATCCTATTGTGATACTTCGCATTGACGGCGAAGATCTTCTCGAGTTTCTTAGCGGTCCAAGTTATGAACCAGAAATAGTTTCCATATTCTCTCAAATTGAATCACCTCAAAAATCTCTTCACGATCTTATAATTCAAGCTCTCGGCAAACTCAATGTTGATCAAGGGATTCCTCCTACATCCGACTCTTGGGTTATCAGCAACATTGTGGAACCAGCACTGCTTTCTGAACATGGGTATGATTTAGATAAACCTGTTTCTCAAGAGATATTTTTGGAGGAATTTAAGAAAGTGGCATTGAGTGTGGCTAATCGTCTTAAGGAGCAACCTGTCATAGTTGCTCATAGTGAAAGCACCTTTGATGGAACTGGTGTTAAGAGACTGTTATCCAACAAGTTTGAATTAGACAAGATATTGAACTCAGCTATAGAGACCTTGCCTAAAGATAAAAATGGAAAAATATCGAAGGATTACCTACGCGTGGCGCTGGACACGGTTGCTCCATCTGCTGCTTTACCTCCATTTGGTGCAATAGAAGAGATGGATAAGGTAATTGGTGAAGTGTTTAAGATGGTGAGTGCAGATGATGCAAAGTTGGTGAAAGAAGAAGAGTTCAAGAAAATATTAACTGAAATATTGGGGAGTATTATGTTGCAGTTGGAAGGAAATCCTATAGCAGTTGCTTCAAATTCTGTCGTGCATGAGCCTCTAGGCTCCTCTTCTACACTTCTGCAGCCAACCCCTGCTGAAACAGCATAA

Protein sequence

>Msa0647490

MESGSGKRKSGGGGGNAVEVLDGSNIMELVGNKDVFSNFVNHKFQELDRDKDGKLSVTELQPAVSDIGAALGLPAKGTNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLSGPSYEPEIVSIFSQIESPQKSLHDLIIQALGKLNVDQGIPPTSDSWVISNIVEPALLSEHGYDLDKPVSQEIFLEEFKKVALSVANRLKEQPVIVAHSESTFDGTGVKRLLSNKFELDKILNSAIETLPKDKNGKISKDYLRVALDTVAPSAALPPFGAIEEMDKVIGEVFKMVSADDAKLVKEEEFKKILTEILGSIMLQLEGNPIAVASNSVVHEPLGSSSTLLQPTPAETA*