Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453940 | XP_024635373.1 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 3.72e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453940 | sp|Q94KK7|SYP52_ARATH | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 3.89e-123 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453940 | I3S333 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 1.78e-164 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008250 | Msa0453940 | -0.802017 | 6.848306e-49 | -8.615850e-47 |
| Msa0010460 | Msa0453940 | 0.813316 | 2.722904e-51 | -8.615850e-47 |
| Msa0017420 | Msa0453940 | -0.827644 | 1.395937e-54 | -8.615850e-47 |
| Msa0029020 | Msa0453940 | 0.824716 | 6.941709e-54 | -8.615850e-47 |
| Msa0030400 | Msa0453940 | -0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0045660 | Msa0453940 | -0.804507 | 2.089690e-49 | -8.615850e-47 |
| Msa0051600 | Msa0453940 | -0.816580 | 5.138891e-52 | -8.615850e-47 |
| Msa0053480 | Msa0453940 | -0.806084 | 9.767127e-50 | -8.615850e-47 |
| Msa0060740 | Msa0453940 | -0.818440 | 1.957618e-52 | -8.615850e-47 |
| Msa0063850 | Msa0453940 | -0.802159 | 6.404108e-49 | -8.615850e-47 |
| Msa0076650 | Msa0453940 | 0.821249 | 4.463880e-53 | -8.615850e-47 |
| Msa0089410 | Msa0453940 | -0.800899 | 1.160760e-48 | -8.615850e-47 |
| Msa0091340 | Msa0453940 | -0.839166 | 1.863764e-57 | -8.615850e-47 |
| Msa0092390 | Msa0453940 | -0.802462 | 5.547266e-49 | -8.615850e-47 |
| Msa0100840 | Msa0453940 | -0.812781 | 3.567046e-51 | -8.615850e-47 |
| Msa0120980 | Msa0453940 | -0.809416 | 1.912418e-50 | -8.615850e-47 |
| Msa0137120 | Msa0453940 | 0.802984 | 4.327174e-49 | -8.615850e-47 |
| Msa0151810 | Msa0453940 | -0.816584 | 5.128885e-52 | -8.615850e-47 |
| Msa0155030 | Msa0453940 | -0.830431 | 2.948730e-55 | -8.615850e-47 |
| Msa0175920 | Msa0453940 | -0.801816 | 7.532795e-49 | -8.615850e-47 |
| Msa0210870 | Msa0453940 | -0.829802 | 4.197384e-55 | -8.615850e-47 |
| Msa0390840 | Msa0453940 | -0.826623 | 2.450342e-54 | -8.615850e-47 |
| Msa0405250 | Msa0453940 | 0.810350 | 1.204354e-50 | -8.615850e-47 |
| Msa0449220 | Msa0453940 | -0.814177 | 1.759228e-51 | -8.615850e-47 |
| Msa0453940 | Msa0521190 | -0.800399 | 1.467987e-48 | -8.615850e-47 |
| Msa0453940 | Msa0524510 | -0.804343 | 2.260513e-49 | -8.615850e-47 |
| Msa0453940 | Msa0528740 | -0.808529 | 2.962296e-50 | -8.615850e-47 |
| Msa0453940 | Msa0535020 | -0.809100 | 2.235831e-50 | -8.615850e-47 |
| Msa0453940 | Msa0535050 | -0.808973 | 2.380540e-50 | -8.615850e-47 |
| Msa0453940 | Msa0548720 | -0.801241 | 9.881423e-49 | -8.615850e-47 |
| Msa0453940 | Msa0569290 | -0.805466 | 1.316688e-49 | -8.615850e-47 |
| Msa0453940 | Msa0573970 | -0.810823 | 9.515319e-51 | -8.615850e-47 |
| Msa0453940 | Msa0597300 | -0.802882 | 4.543901e-49 | -8.615850e-47 |
| Msa0453940 | Msa0607440 | -0.815099 | 1.099682e-51 | -8.615850e-47 |
| Msa0453940 | Msa0622690 | -0.812340 | 4.454480e-51 | -8.615850e-47 |
| Msa0453940 | Msa0650360 | -0.815833 | 7.547663e-52 | -8.615850e-47 |
| Msa0453940 | Msa0657820 | -0.801051 | 1.080409e-48 | -8.615850e-47 |
| Msa0453940 | Msa0668160 | -0.800613 | 1.327667e-48 | -8.615850e-47 |
| Msa0453940 | Msa0743630 | -0.809492 | 1.842161e-50 | -8.615850e-47 |
| Msa0453940 | Msa0807950 | -0.810583 | 1.072591e-50 | -8.615850e-47 |
| Msa0453940 | Msa0814780 | -0.816958 | 4.227875e-52 | -8.615850e-47 |
| Msa0453940 | Msa0840630 | -0.815408 | 9.389279e-52 | -8.615850e-47 |
| Msa0453940 | Msa0882430 | 0.827772 | 1.300846e-54 | -8.615850e-47 |
| Msa0453940 | Msa0902810 | -0.802516 | 5.406505e-49 | -8.615850e-47 |
| Msa0453940 | Msa0947520 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0453940 | Msa0968010 | -0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0453940 | Msa0970050 | -0.813234 | 2.837979e-51 | -8.615850e-47 |
| Msa0453940 | Msa0974570 | -0.807839 | 4.154896e-50 | -8.615850e-47 |
| Msa0453940 | Msa1008960 | -0.808901 | 2.465916e-50 | -8.615850e-47 |
| Msa0453940 | Msa1038820 | -0.808442 | 3.091061e-50 | -8.615850e-47 |
| Msa0453940 | Msa1054890 | -0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0453940 | Msa1096280 | -0.805792 | 1.124970e-49 | -8.615850e-47 |
| Msa0453940 | Msa1151970 | -0.824042 | 1.000026e-53 | -8.615850e-47 |
| Msa0453940 | Msa1198270 | -0.828902 | 6.945657e-55 | -8.615850e-47 |
| Msa0453940 | Msa1233770 | -0.804838 | 1.782430e-49 | -8.615850e-47 |
| Msa0453940 | Msa1249370 | 0.803668 | 3.122965e-49 | -8.615850e-47 |
| Msa0453940 | Msa1287090 | 0.802246 | 6.143763e-49 | -8.615850e-47 |
| Msa0453940 | Msa1298440 | 0.801680 | 8.033381e-49 | -8.615850e-47 |
| Msa0453940 | Msa1317140 | -0.813145 | 2.968380e-51 | -8.615850e-47 |
| Msa0453940 | Msa1345030 | 0.824230 | 9.032655e-54 | -8.615850e-47 |
| Msa0453940 | Msa1371840 | -0.805602 | 1.233488e-49 | -8.615850e-47 |
| Msa0244370 | Msa0453940 | -0.801032 | 1.090363e-48 | -8.615850e-47 |
| Msa0258380 | Msa0453940 | -0.820153 | 7.971082e-53 | -8.615850e-47 |
| Msa0258410 | Msa0453940 | -0.806212 | 9.177461e-50 | -8.615850e-47 |
| Msa0270840 | Msa0453940 | -0.813109 | 3.023423e-51 | -8.615850e-47 |
| Msa0303950 | Msa0453940 | -0.807034 | 6.157032e-50 | -8.615850e-47 |
| Msa0309670 | Msa0453940 | -0.818402 | 1.997315e-52 | -8.615850e-47 |
| Msa0335890 | Msa0453940 | 0.809571 | 1.771429e-50 | -8.615850e-47 |
| Msa0352200 | Msa0453940 | -0.821370 | 4.187092e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453940 | MtrunA17_Chr3g0100211 | 99.563 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 3.42e-168 | 462 |
| Msa0453940 | MtrunA17_Chr8g0349161 | 98.690 | 229 | 3 | 0 | 1 | 229 | 1 | 229 | 1.79e-167 | 460 |
| Msa0453940 | MtrunA17_Chr5g0445021 | 76.812 | 138 | 29 | 1 | 3 | 137 | 2 | 139 | 6.40e-71 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453940 | AT1G79590.1 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 3.95e-124 | 351 |
| Msa0453940 | AT1G79590.2 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 3.95e-124 | 351 |
| Msa0453940 | AT1G79590.3 | 74.678 | 233 | 55 | 2 | 1 | 229 | 32 | 264 | 1.17e-123 | 351 |
| Msa0453940 | AT1G16240.2 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 1.94e-121 | 344 |
| Msa0453940 | AT1G16240.1 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 1.94e-121 | 344 |
| Msa0453940 | AT1G16240.4 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 1.94e-121 | 344 |
| Msa0453940 | AT1G16240.3 | 72.021 | 193 | 51 | 2 | 1 | 190 | 1 | 193 | 2.50e-94 | 276 |
| Msa0453940 | AT1G16230.1 | 56.545 | 191 | 80 | 2 | 1 | 189 | 1 | 190 | 1.86e-65 | 201 |
| Msa0453940 | AT1G16225.2 | 47.938 | 194 | 96 | 2 | 1 | 192 | 1 | 191 | 1.27e-49 | 162 |
| Msa0453940 | AT1G16225.1 | 47.647 | 170 | 84 | 2 | 25 | 192 | 1 | 167 | 1.69e-39 | 135 |
| Msa0453940 | AT1G16225.3 | 46.763 | 139 | 69 | 2 | 1 | 137 | 1 | 136 | 1.14e-31 | 113 |
| Msa0453940 | AT1G28490.2 | 29.940 | 167 | 100 | 6 | 72 | 222 | 39 | 204 | 7.29e-11 | 60.1 |
| Msa0453940 | AT1G28490.1 | 29.940 | 167 | 100 | 6 | 72 | 222 | 78 | 243 | 7.38e-11 | 60.5 |
| Msa0453940 | AT1G28490.3 | 29.940 | 167 | 100 | 6 | 72 | 222 | 33 | 198 | 8.28e-11 | 59.7 |
Find 81 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATCTGGTTTAATTTC+TGG | 0.179304 | 3_3:+44917453 | None:intergenic |
| ACATGTCAAACTTTGCAAAT+AGG | 0.204618 | 3_3:-44917491 | Msa0453940:CDS |
| CAAATTTCACCTGCAAATTA+AGG | 0.210500 | 3_3:+44920053 | None:intergenic |
| GATGCATGACGTTGTGTTTC+TGG | 0.219951 | 3_3:+44917961 | None:intergenic |
| AAGAAGGAAAATCACAATAT+TGG | 0.253542 | 3_3:-44917932 | Msa0453940:CDS |
| GGTTCTTGTCATATGGCTTC+TGG | 0.253840 | 3_3:-44916310 | Msa0453940:CDS |
| AGAAGGAAAATCACAATATT+GGG | 0.265836 | 3_3:-44917931 | Msa0453940:CDS |
| TTCTCTTCTCACTCAATAAT+AGG | 0.275155 | 3_3:+44916010 | None:intergenic |
| AGATGAGGGCCTTGAGAAAT+TGG | 0.280110 | 3_3:-44917281 | Msa0453940:CDS |
| CATGTCAAACTTTGCAAATA+GGG | 0.294997 | 3_3:-44917490 | Msa0453940:CDS |
| AAAACACTTTCTCTGAATTA+GGG | 0.313305 | 3_3:+44920079 | None:intergenic |
| CATAATTCATTTCCTTCATC+TGG | 0.315930 | 3_3:-44917985 | Msa0453940:CDS |
| CAGCTGAATACTCACTTTAC+AGG | 0.320411 | 3_3:+44917868 | None:intergenic |
| TGGGTTTGGTTCTTGTCATA+TGG | 0.348542 | 3_3:-44916317 | Msa0453940:CDS |
| AGTGATTGGTATAGTGGGTT+TGG | 0.352039 | 3_3:-44916331 | Msa0453940:CDS |
| ACAGTTCTGCTCATTGCATC+TGG | 0.359258 | 3_3:+44917441 | None:intergenic |
| ATTAGCAGTGATTGGTATAG+TGG | 0.391361 | 3_3:-44916337 | Msa0453940:CDS |
| ACTTTCTCTGAATTAGGGTT+TGG | 0.399458 | 3_3:+44920084 | None:intergenic |
| TGTTCAAAGTTGAAGCCATT+TGG | 0.405777 | 3_3:+44917511 | None:intergenic |
| GGGATTGCAAGCTATCTAAT+CGG | 0.411055 | 3_3:+44917905 | None:intergenic |
| TTACAGGGAGCTTTAACAAA+AGG | 0.417820 | 3_3:+44917884 | None:intergenic |
| ATATGATATGATATGTTTCA+AGG | 0.426347 | 3_3:+44916212 | None:intergenic |
| CTCAATACATTCCATGTCAT+TGG | 0.429668 | 3_3:+44916154 | None:intergenic |
| ATGTAGATGTCACAGATTCT+CGG | 0.431976 | 3_3:-44917073 | Msa0453940:CDS |
| TTCTTCAGACTCATGGTTGA+AGG | 0.435094 | 3_3:-44918061 | Msa0453940:CDS |
| TTGGATAACAATGGACTTGT+TGG | 0.440074 | 3_3:-44917414 | Msa0453940:CDS |
| GAGGTCAAAGGTTAACCAAA+TGG | 0.450048 | 3_3:-44917526 | Msa0453940:CDS |
| ACTCAATAATAGGTGACTTA+AGG | 0.462852 | 3_3:+44916020 | None:intergenic |
| TACAGGGAGCTTTAACAAAA+GGG | 0.463868 | 3_3:+44917885 | None:intergenic |
| TGTGTTTCTGGTCCAGATGA+AGG | 0.467807 | 3_3:+44917973 | None:intergenic |
| GGAAAAGTTTGCTGAGTTGT+GGG | 0.468851 | 3_3:+44916262 | None:intergenic |
| TTCACCTAATTTCAGGCCAA+TGG | 0.473419 | 3_3:-44918088 | Msa0453940:intron |
| TGGCATCTTCTTCAGACTCA+TGG | 0.482083 | 3_3:-44918068 | Msa0453940:CDS |
| AGGACAACCTTGCAAATTTG+AGG | 0.487031 | 3_3:-44917545 | Msa0453940:CDS |
| CCTTGCAAATTTGAGGTCAA+AGG | 0.488877 | 3_3:-44917538 | Msa0453940:CDS |
| GGGAAAAGTTTGCTGAGTTG+TGG | 0.494877 | 3_3:+44916261 | None:intergenic |
| GCAAATAGGGATAGTTTGCT+CGG | 0.495730 | 3_3:-44917477 | Msa0453940:CDS |
| TTTGGTAATTGAGATGAAAG+AGG | 0.518164 | 3_3:+44920102 | None:intergenic |
| GGATTGCAAGCTATCTAATC+GGG | 0.534842 | 3_3:+44917906 | None:intergenic |
| GTCATGCATCTGCTATAAGA+AGG | 0.539643 | 3_3:-44917948 | Msa0453940:CDS |
| TTTGTACTTTGCCAATGACA+TGG | 0.544189 | 3_3:-44916165 | Msa0453940:three_prime_UTR |
| ACAGAGAGTGCAGAAGAACT+TGG | 0.545697 | 3_3:-44916409 | Msa0453940:intron |
| TTAGCAGTGATTGGTATAGT+GGG | 0.549125 | 3_3:-44916336 | Msa0453940:CDS |
| TTTACGAAATGTGAATGAAA+CGG | 0.550120 | 3_3:+44920210 | None:intergenic |
| CAAATAGGGATAGTTTGCTC+GGG | 0.550659 | 3_3:-44917476 | Msa0453940:CDS |
| ATGTCACAGATTCTCGGCTG+AGG | 0.559797 | 3_3:-44917067 | Msa0453940:CDS |
| ATGGACTTGTTGGTCTGCAA+CGG | 0.564781 | 3_3:-44917404 | Msa0453940:CDS |
| AATGATAAATAGGTCTGAGA+AGG | 0.567578 | 3_3:-44917583 | Msa0453940:intron |
| CGGTCTCCTCCAATTTCTCA+AGG | 0.568939 | 3_3:+44917272 | None:intergenic |
| TGCATGCTATTAGCAGTGAT+TGG | 0.573326 | 3_3:-44916345 | Msa0453940:CDS |
| GTCGTTTATGATGTCTCTTG+TGG | 0.575217 | 3_3:+44920253 | None:intergenic |
| CCTTTGACCTCAAATTTGCA+AGG | 0.577028 | 3_3:+44917538 | None:intergenic |
| GAATGTATTGAGGTCTTGAA+AGG | 0.580785 | 3_3:-44916143 | Msa0453940:three_prime_UTR |
| TTTCTAACAGAGCAAGATGA+GGG | 0.582199 | 3_3:-44917295 | Msa0453940:intron |
| TGGATTGTGCTACGTCTACG+CGG | 0.586886 | 3_3:+44920273 | None:intergenic |
| CTGCAACGGCAAGTTATGAA+AGG | 0.592264 | 3_3:-44917390 | Msa0453940:intron |
| TGAGGGCCTTGAGAAATTGG+AGG | 0.594430 | 3_3:-44917278 | Msa0453940:CDS |
| TAAACGACAACGGTGCCGCT+CGG | 0.594507 | 3_3:-44920191 | Msa0453940:five_prime_UTR |
| AAGTACAAAACATATTGCGT+TGG | 0.595524 | 3_3:-44917245 | Msa0453940:CDS |
| TGTCACAGATTCTCGGCTGA+GGG | 0.596979 | 3_3:-44917066 | Msa0453940:intron |
| GATGCAATGAGCAGAACTGT+TGG | 0.597248 | 3_3:-44917438 | Msa0453940:CDS |
| TTAAACAAACGTACTAAGGG+TGG | 0.598231 | 3_3:-44916381 | Msa0453940:CDS |
| CATTCAGAAACATAAACACA+AGG | 0.604633 | 3_3:+44916239 | None:intergenic |
| AATGAGCAGAACTGTTGGCT+TGG | 0.609524 | 3_3:-44917433 | Msa0453940:CDS |
| GAAGGAAAATCACAATATTG+GGG | 0.609732 | 3_3:-44917930 | Msa0453940:CDS |
| CAATGACATGGAATGTATTG+AGG | 0.609822 | 3_3:-44916153 | Msa0453940:three_prime_UTR |
| AGCTGAATACTCACTTTACA+GGG | 0.612522 | 3_3:+44917869 | None:intergenic |
| GAGTCTGAAGAAGATGCCAT+TGG | 0.624414 | 3_3:+44918072 | None:intergenic |
| GTCGATGAGATTGATCGATA+CGG | 0.625595 | 3_3:+44920128 | None:intergenic |
| TCACATTTCGTAAACGACAA+CGG | 0.627367 | 3_3:-44920201 | Msa0453940:five_prime_UTR |
| ATTCAGAAACATAAACACAA+GGG | 0.630462 | 3_3:+44916240 | None:intergenic |
| TTCAGAAACATAAACACAAG+GGG | 0.631880 | 3_3:+44916241 | None:intergenic |
| ACTGTTGGCTTGGATAACAA+TGG | 0.640180 | 3_3:-44917423 | Msa0453940:CDS |
| AACGGTGCGGTAGCACCGAG+CGG | 0.646697 | 3_3:+44920176 | None:intergenic |
| GAAGGAGATGAATCGTCGCA+AGG | 0.666742 | 3_3:-44917565 | Msa0453940:CDS |
| AAAGAACAATCGAAGAACCT+CGG | 0.669452 | 3_3:+44916185 | None:intergenic |
| TTAGGAAGAGAATAGCGTAA+CGG | 0.685038 | 3_3:+44920158 | None:intergenic |
| AAGAGAATAGCGTAACGGTG+CGG | 0.689476 | 3_3:+44920163 | None:intergenic |
| AAACTTGCTGATGATATCAG+TGG | 0.699595 | 3_3:-44918021 | Msa0453940:CDS |
| TATCATATCATATATAACCG+AGG | 0.706995 | 3_3:-44916202 | Msa0453940:three_prime_UTR |
| GGATTGTGCTACGTCTACGC+GGG | 0.716916 | 3_3:+44920274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATAATTATATGAAAA+TGG | + | chr3_3:44918533-44918552 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAGTTTTGAATTC+TGG | - | chr3_3:44916262-44916281 | Msa0453940:three_prime_UTR | 15.0% |
| !! | AAATTATTAGATATAGAGAT+AGG | - | chr3_3:44916867-44916886 | Msa0453940:intron | 15.0% |
| !! | TATAAAAATAGCTTATACAT+AGG | + | chr3_3:44916992-44917011 | None:intergenic | 15.0% |
| !! | GATATTAAATTATCATAAGT+GGG | - | chr3_3:44917855-44917874 | Msa0453940:intron | 15.0% |
| !! | ATAATTATATGAAAATGGTA+AGG | + | chr3_3:44918528-44918547 | None:intergenic | 15.0% |
| !!! | AATATGTTTTGTACTTAATA+CGG | + | chr3_3:44918998-44919017 | None:intergenic | 15.0% |
| !! | TGGAAATATAATCATTAATT+TGG | - | chr3_3:44919453-44919472 | Msa0453940:intron | 15.0% |
| !! | GGAAATATAATCATTAATTT+GGG | - | chr3_3:44919454-44919473 | Msa0453940:intron | 15.0% |
| !! | TATAAATTATTGAATATCTG+TGG | - | chr3_3:44919615-44919634 | Msa0453940:intron | 15.0% |
| !!! | AAGATAAAATTGTCATTTTT+CGG | - | chr3_3:44919649-44919668 | Msa0453940:intron | 15.0% |
| !! | TAAAGCTTGAAATAGATTAA+GGG | + | chr3_3:44917181-44917200 | None:intergenic | 20.0% |
| !! | TTAAAGCTTGAAATAGATTA+AGG | + | chr3_3:44917182-44917201 | None:intergenic | 20.0% |
| !! | CATATAAATATTTGAGAAAG+CGG | - | chr3_3:44917229-44917248 | Msa0453940:CDS | 20.0% |
| !! | TTAAACATAATTGATAGAGA+AGG | - | chr3_3:44917258-44917277 | Msa0453940:CDS | 20.0% |
| !! | GGATATTAAATTATCATAAG+TGG | - | chr3_3:44917854-44917873 | Msa0453940:intron | 20.0% |
| !!! | TATCTAGATTGTTGATTATA+TGG | - | chr3_3:44918011-44918030 | Msa0453940:CDS | 20.0% |
| !!! | TTATTCTGAAAAATGTTTTG+TGG | - | chr3_3:44918484-44918503 | Msa0453940:intron | 20.0% |
| !! | TTCTTTGTCAAATGATAAAT+AGG | - | chr3_3:44918654-44918673 | Msa0453940:intron | 20.0% |
| !! | TTAGCAAAGAAAATTAACAT+AGG | + | chr3_3:44919078-44919097 | None:intergenic | 20.0% |
| !!! | TGAATCTTTTATTTTCTTCT+AGG | - | chr3_3:44919136-44919155 | Msa0453940:intron | 20.0% |
| !! | CAAAATACTTATCAGAATTA+AGG | + | chr3_3:44919350-44919369 | None:intergenic | 20.0% |
| !!! | AAATAGATGTACCATATTTT+TGG | - | chr3_3:44919414-44919433 | Msa0453940:intron | 20.0% |
| !! | AAAAAAACTTAAAAGGGAAA+AGG | + | chr3_3:44919743-44919762 | None:intergenic | 20.0% |
| !!! | AATTTTAAACAAACGTACTA+AGG | - | chr3_3:44919862-44919881 | Msa0453940:intron | 20.0% |
| !!! | ATTTTAAACAAACGTACTAA+GGG | - | chr3_3:44919863-44919882 | Msa0453940:intron | 20.0% |
| !! | ATATGATATGATATGTTTCA+AGG | + | chr3_3:44920038-44920057 | None:intergenic | 20.0% |
| ! | TTTACGAAATGTGAATGAAA+CGG | + | chr3_3:44916040-44916059 | None:intergenic | 25.0% |
| ! | AAAACACTTTCTCTGAATTA+GGG | + | chr3_3:44916171-44916190 | None:intergenic | 25.0% |
| ! | AAAAACACTTTCTCTGAATT+AGG | + | chr3_3:44916172-44916191 | None:intergenic | 25.0% |
| !!! | AAAACGTGTTTTTTTTTGTG+TGG | - | chr3_3:44916306-44916325 | Msa0453940:CDS | 25.0% |
| !!! | GTGTATGATTTTGATGTTAA+AGG | - | chr3_3:44916379-44916398 | Msa0453940:CDS | 25.0% |
| !!! | TATGATTTTGATGTTAAAGG+TGG | - | chr3_3:44916382-44916401 | Msa0453940:CDS | 25.0% |
| !! | TTAAAGGTGGTTAATTTTGT+TGG | - | chr3_3:44916395-44916414 | Msa0453940:CDS | 25.0% |
| !! | TAAAGGTGGTTAATTTTGTT+GGG | - | chr3_3:44916396-44916415 | Msa0453940:CDS | 25.0% |
| !!! | AATAGATGAATTTGTTGTTG+AGG | - | chr3_3:44916496-44916515 | Msa0453940:intron | 25.0% |
| ! | CTGTACTAAATAGTTTATTG+CGG | - | chr3_3:44916615-44916634 | Msa0453940:intron | 25.0% |
| ! | TTTCCAACAAAAAAGTAAAC+CGG | + | chr3_3:44916850-44916869 | None:intergenic | 25.0% |
| !! | ATAGAGATAGGAATTTTTGA+AGG | - | chr3_3:44916879-44916898 | Msa0453940:intron | 25.0% |
| ! | TACAAACGTTTATCTAAACA+GGG | + | chr3_3:44916926-44916945 | None:intergenic | 25.0% |
| ! | ATACAAACGTTTATCTAAAC+AGG | + | chr3_3:44916927-44916946 | None:intergenic | 25.0% |
| !!! | GCTATTTTCATAAGTTATCT+TGG | - | chr3_3:44917048-44917067 | Msa0453940:intron | 25.0% |
| !!! | ACGTATTTTAGTTTATCTAC+TGG | + | chr3_3:44917145-44917164 | None:intergenic | 25.0% |
| !! | ATTTCAAGCTTTAATAGCAA+TGG | - | chr3_3:44917188-44917207 | Msa0453940:intron | 25.0% |
| !! | TAGTTTTTCTCTCACTTAAT+AGG | - | chr3_3:44917481-44917500 | Msa0453940:CDS | 25.0% |
| ! | AACTTAGTAAGTAAAACACA+TGG | + | chr3_3:44917604-44917623 | None:intergenic | 25.0% |
| ! | AAAAACTTTAAGTACTTTCC+AGG | + | chr3_3:44917986-44918005 | None:intergenic | 25.0% |
| !!! | TGGAAAGTACTTAAAGTTTT+TGG | - | chr3_3:44917985-44918004 | Msa0453940:CDS | 25.0% |
| !!! | GGAAAGTACTTAAAGTTTTT+GGG | - | chr3_3:44917986-44918005 | Msa0453940:CDS | 25.0% |
| ! | AAAAAGAAAGCAAAAATGAG+AGG | + | chr3_3:44918141-44918160 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTCACCTAATTTC+AGG | - | chr3_3:44918152-44918171 | Msa0453940:intron | 25.0% |
| ! | AAGAAGGAAAATCACAATAT+TGG | - | chr3_3:44918315-44918334 | Msa0453940:intron | 25.0% |
| ! | AGAAGGAAAATCACAATATT+GGG | - | chr3_3:44918316-44918335 | Msa0453940:intron | 25.0% |
| !!! | AAAAAGCATCATATTACTAC+AGG | + | chr3_3:44918466-44918485 | None:intergenic | 25.0% |
| !! | GAAATACATAATTTGTGCTT+TGG | - | chr3_3:44918908-44918927 | Msa0453940:intron | 25.0% |
| ! | CAAAGAAAATTAACATAGGA+TGG | + | chr3_3:44919074-44919093 | None:intergenic | 25.0% |
| !! | AAGTATTTTGTCTCAGAATT+AGG | - | chr3_3:44919360-44919379 | Msa0453940:intron | 25.0% |
| !! | ATCTATTTGAAATGTCAGAT+TGG | + | chr3_3:44919402-44919421 | None:intergenic | 25.0% |
| !!! | ATGTTGTTACTTTTTGTATG+AGG | - | chr3_3:44919539-44919558 | Msa0453940:intron | 25.0% |
| ! | GTAAACTTACATAGTTAACT+AGG | - | chr3_3:44919586-44919605 | Msa0453940:intron | 25.0% |
| ! | TATCACAAAAGAAACAGAAA+AGG | + | chr3_3:44919818-44919837 | None:intergenic | 25.0% |
| ! | ATTCAGAAACATAAACACAA+GGG | + | chr3_3:44920010-44920029 | None:intergenic | 25.0% |
| ! | TATCATATCATATATAACCG+AGG | - | chr3_3:44920045-44920064 | Msa0453940:intron | 25.0% |
| ! | TTTGGTAATTGAGATGAAAG+AGG | + | chr3_3:44916148-44916167 | None:intergenic | 30.0% |
| !!! | TGTTTTTCTCCTTAATTTGC+AGG | - | chr3_3:44916185-44916204 | Msa0453940:three_prime_UTR | 30.0% |
| CAAATTTCACCTGCAAATTA+AGG | + | chr3_3:44916197-44916216 | None:intergenic | 30.0% | |
| ! | TGAATTCTGGATTGTGTTTT+TGG | - | chr3_3:44916275-44916294 | Msa0453940:three_prime_UTR | 30.0% |
| !!! | TGTGGTTGATTTTGACTTTT+TGG | - | chr3_3:44916324-44916343 | Msa0453940:CDS | 30.0% |
| !!! | GTGGTTGATTTTGACTTTTT+GGG | - | chr3_3:44916325-44916344 | Msa0453940:CDS | 30.0% |
| !!! | TGGTTGATTTTGACTTTTTG+GGG | - | chr3_3:44916326-44916345 | Msa0453940:CDS | 30.0% |
| !!! | TCATTGTTTTTGTGATCATG+AGG | - | chr3_3:44916450-44916469 | Msa0453940:intron | 30.0% |
| !!! | GGCAATTAGTTTGGTTTTTT+AGG | - | chr3_3:44916517-44916536 | Msa0453940:intron | 30.0% |
| ! | CAGTGTGTCAAAATTTTCTA+CGG | + | chr3_3:44916598-44916617 | None:intergenic | 30.0% |
| AAATCAGTGATGTTAAACAG+CGG | + | chr3_3:44916689-44916708 | None:intergenic | 30.0% | |
| !!! | CTGTTTAACATCACTGATTT+TGG | - | chr3_3:44916689-44916708 | Msa0453940:intron | 30.0% |
| !!! | ATCACTGATTTTGGTTTAGA+AGG | - | chr3_3:44916698-44916717 | Msa0453940:intron | 30.0% |
| TATTCATGAGGTTTATGTGA+TGG | - | chr3_3:44916807-44916826 | Msa0453940:intron | 30.0% | |
| !!! | TATCCGGTTTACTTTTTTGT+TGG | - | chr3_3:44916844-44916863 | Msa0453940:intron | 30.0% |
| !! | AGGAATTTTTGAAGGAGTAT+AGG | - | chr3_3:44916887-44916906 | Msa0453940:intron | 30.0% |
| AAAATCTCATGCTATTCACA+TGG | + | chr3_3:44916957-44916976 | None:intergenic | 30.0% | |
| ATTCAAAGACACTCTAACAA+AGG | + | chr3_3:44917302-44917321 | None:intergenic | 30.0% | |
| ! | GTCTAAAATTGACTCAAAGA+AGG | + | chr3_3:44917341-44917360 | None:intergenic | 30.0% |
| ! | TCAATTTTAGACACGTAATC+AGG | - | chr3_3:44917349-44917368 | Msa0453940:intron | 30.0% |
| GAGAGAAAAACTACAAAGTT+AGG | + | chr3_3:44917474-44917493 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTCAAGATACTAGC+TGG | - | chr3_3:44917578-44917597 | Msa0453940:intron | 30.0% |
| TAAATGTCTTAACTCAGTTG+CGG | - | chr3_3:44917642-44917661 | Msa0453940:intron | 30.0% | |
| AAGTTGGATACAATGTATGT+TGG | - | chr3_3:44917679-44917698 | Msa0453940:intron | 30.0% | |
| !! | TCTTTCTCTTGTTTCAGTTT+TGG | - | chr3_3:44918036-44918055 | Msa0453940:CDS | 30.0% |
| CATAATTCATTTCCTTCATC+TGG | - | chr3_3:44918262-44918281 | Msa0453940:intron | 30.0% | |
| GAAGGAAAATCACAATATTG+GGG | - | chr3_3:44918317-44918336 | Msa0453940:intron | 30.0% | |
| TTGTTTACCCTGATTAAGAA+AGG | - | chr3_3:44918402-44918421 | Msa0453940:intron | 30.0% | |
| AATGATAAATAGGTCTGAGA+AGG | - | chr3_3:44918664-44918683 | Msa0453940:intron | 30.0% | |
| ACATGTCAAACTTTGCAAAT+AGG | - | chr3_3:44918756-44918775 | Msa0453940:intron | 30.0% | |
| CATGTCAAACTTTGCAAATA+GGG | - | chr3_3:44918757-44918776 | Msa0453940:intron | 30.0% | |
| ! | ATTGCATCTGGTTTAATTTC+TGG | + | chr3_3:44918797-44918816 | None:intergenic | 30.0% |
| !! | TGTGCTTTGGATATTGATTT+CGG | - | chr3_3:44918921-44918940 | Msa0453940:intron | 30.0% |
| AAGTACAAAACATATTGCGT+TGG | - | chr3_3:44919002-44919021 | Msa0453940:intron | 30.0% | |
| !!! | TATTTTCTTCTAGGATGACT+TGG | - | chr3_3:44919145-44919164 | Msa0453940:intron | 30.0% |
| TATATGCCTAAAGAAAGTTG+TGG | + | chr3_3:44919218-44919237 | None:intergenic | 30.0% | |
| CGTACATCAAACCAAAAATA+TGG | + | chr3_3:44919428-44919447 | None:intergenic | 30.0% | |
| !!! | AAAATTGTCATTTTTCGGCT+AGG | - | chr3_3:44919654-44919673 | Msa0453940:intron | 30.0% |
| TTCAGAAACATAAACACAAG+GGG | + | chr3_3:44920009-44920028 | None:intergenic | 30.0% | |
| CATTCAGAAACATAAACACA+AGG | + | chr3_3:44920011-44920030 | None:intergenic | 30.0% | |
| ACTCAATAATAGGTGACTTA+AGG | + | chr3_3:44920230-44920249 | None:intergenic | 30.0% | |
| TTCTCTTCTCACTCAATAAT+AGG | + | chr3_3:44920240-44920259 | None:intergenic | 30.0% | |
| TCACATTTCGTAAACGACAA+CGG | - | chr3_3:44916046-44916065 | Msa0453940:three_prime_UTR | 35.0% | |
| TTAGGAAGAGAATAGCGTAA+CGG | + | chr3_3:44916092-44916111 | None:intergenic | 35.0% | |
| ACTTTCTCTGAATTAGGGTT+TGG | + | chr3_3:44916166-44916185 | None:intergenic | 35.0% | |
| AAAACGAACAGATCGTAAAG+TGG | + | chr3_3:44916223-44916242 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGGGATTTCGTGA+TGG | - | chr3_3:44916408-44916427 | Msa0453940:CDS | 35.0% |
| ! | TTTTGTTGGGATTTCGTGAT+GGG | - | chr3_3:44916409-44916428 | Msa0453940:intron | 35.0% |
| ! | TTTTTGTGATCATGAGGTGA+TGG | - | chr3_3:44916456-44916475 | Msa0453940:intron | 35.0% |
| TGTTGTTGAGGCAATTAGTT+TGG | - | chr3_3:44916508-44916527 | Msa0453940:intron | 35.0% | |
| !!! | GTTTGGTTTTTTAGGTGAAG+AGG | - | chr3_3:44916525-44916544 | Msa0453940:intron | 35.0% |
| AATAGTTTATTGCGGAACAG+TGG | - | chr3_3:44916623-44916642 | Msa0453940:intron | 35.0% | |
| !!! | GATTTTGGTTTAGAAGGATG+TGG | - | chr3_3:44916704-44916723 | Msa0453940:intron | 35.0% |
| TTGACTATCAACCATTGAAC+CGG | + | chr3_3:44916770-44916789 | None:intergenic | 35.0% | |
| !! | GTTCAATGGTTGATAGTCAA+GGG | - | chr3_3:44916770-44916789 | Msa0453940:intron | 35.0% |
| AAGTACTTGTGTGACTGTTT+GGG | + | chr3_3:44917119-44917138 | None:intergenic | 35.0% | |
| TAAGTACTTGTGTGACTGTT+TGG | + | chr3_3:44917120-44917139 | None:intergenic | 35.0% | |
| ! | AAATAGATTAAGGGCATGTC+TGG | + | chr3_3:44917172-44917191 | None:intergenic | 35.0% |
| CTTTAATAGCAATGGTGTGT+TGG | - | chr3_3:44917196-44917215 | Msa0453940:intron | 35.0% | |
| CATAATTGATAGAGAAGGCT+TGG | - | chr3_3:44917263-44917282 | Msa0453940:CDS | 35.0% | |
| ACGTAATCAGGTAAAGTTTC+TGG | - | chr3_3:44917361-44917380 | Msa0453940:intron | 35.0% | |
| CGTAATCAGGTAAAGTTTCT+GGG | - | chr3_3:44917362-44917381 | Msa0453940:intron | 35.0% | |
| GTAATCAGGTAAAGTTTCTG+GGG | - | chr3_3:44917363-44917382 | Msa0453940:intron | 35.0% | |
| CTGTTAGTTAGCTACATAGA+AGG | + | chr3_3:44917442-44917461 | None:intergenic | 35.0% | |
| ACTACAAAGTTAGGAAGACA+TGG | + | chr3_3:44917465-44917484 | None:intergenic | 35.0% | |
| AACAGCGAAAAAACTTTCTC+AGG | - | chr3_3:44917511-44917530 | Msa0453940:CDS | 35.0% | |
| TTGGATACAATGTATGTTGG+TGG | - | chr3_3:44917682-44917701 | Msa0453940:intron | 35.0% | |
| TTGATTACACACTTGTATGC+CGG | - | chr3_3:44917788-44917807 | Msa0453940:intron | 35.0% | |
| ! | TTTTATGAGTTTCTCTAGCC+AGG | - | chr3_3:44917911-44917930 | Msa0453940:CDS | 35.0% |
| AACACGAAATGAATACTACC+TGG | + | chr3_3:44917932-44917951 | None:intergenic | 35.0% | |
| TTCATTTCGTGTTAATCACG+TGG | - | chr3_3:44917939-44917958 | Msa0453940:CDS | 35.0% | |
| !!! | GGAAAAGCTCTTTATTTTCC+TGG | - | chr3_3:44917965-44917984 | Msa0453940:CDS | 35.0% |
| !! | AAACTTGCTGATGATATCAG+TGG | - | chr3_3:44918226-44918245 | Msa0453940:intron | 35.0% |
| ! | TACAGGGAGCTTTAACAAAA+GGG | + | chr3_3:44918365-44918384 | None:intergenic | 35.0% |
| ! | TTACAGGGAGCTTTAACAAA+AGG | + | chr3_3:44918366-44918385 | None:intergenic | 35.0% |
| AGCTGAATACTCACTTTACA+GGG | + | chr3_3:44918381-44918400 | None:intergenic | 35.0% | |
| TTACCCTGATTAAGAAAGGA+TGG | - | chr3_3:44918406-44918425 | Msa0453940:intron | 35.0% | |
| AAATGGTAAGGAGATAGCTA+TGG | + | chr3_3:44918516-44918535 | None:intergenic | 35.0% | |
| TGTTCAAAGTTGAAGCCATT+TGG | + | chr3_3:44918739-44918758 | None:intergenic | 35.0% | |
| ! | TTGGATAACAATGGACTTGT+TGG | - | chr3_3:44918833-44918852 | Msa0453940:intron | 35.0% |
| ! | TTTTCTAACAGAGCAAGATG+AGG | - | chr3_3:44918951-44918970 | Msa0453940:intron | 35.0% |
| TTTCTAACAGAGCAAGATGA+GGG | - | chr3_3:44918952-44918971 | Msa0453940:intron | 35.0% | |
| ATGTAGATGTCACAGATTCT+CGG | - | chr3_3:44919174-44919193 | Msa0453940:intron | 35.0% | |
| CTCTTACCACAACTTTCTTT+AGG | - | chr3_3:44919209-44919228 | Msa0453940:intron | 35.0% | |
| ! | TTGGTTTGATGTACGTTGTT+TGG | - | chr3_3:44919433-44919452 | Msa0453940:intron | 35.0% |
| TTAAACAAACGTACTAAGGG+TGG | - | chr3_3:44919866-44919885 | Msa0453940:intron | 35.0% | |
| ATTAGCAGTGATTGGTATAG+TGG | - | chr3_3:44919910-44919929 | Msa0453940:intron | 35.0% | |
| TTAGCAGTGATTGGTATAGT+GGG | - | chr3_3:44919911-44919930 | Msa0453940:intron | 35.0% | |
| AAAGAACAATCGAAGAACCT+CGG | + | chr3_3:44920065-44920084 | None:intergenic | 35.0% | |
| TTTGTACTTTGCCAATGACA+TGG | - | chr3_3:44920082-44920101 | Msa0453940:five_prime_UTR | 35.0% | |
| CTCAATACATTCCATGTCAT+TGG | + | chr3_3:44920096-44920115 | None:intergenic | 35.0% | |
| CAATGACATGGAATGTATTG+AGG | - | chr3_3:44920094-44920113 | Msa0453940:five_prime_UTR | 35.0% | |
| GAATGTATTGAGGTCTTGAA+AGG | - | chr3_3:44920104-44920123 | Msa0453940:five_prime_UTR | 35.0% | |
| GTCGTTTATGATGTCTCTTG+TGG | + | chr3_3:44915997-44916016 | None:intergenic | 40.0% | |
| GTCGATGAGATTGATCGATA+CGG | + | chr3_3:44916122-44916141 | None:intergenic | 40.0% | |
| TTGATGGGAGTGGTGTTTAA+TGG | - | chr3_3:44916740-44916759 | Msa0453940:intron | 40.0% | |
| AGTGGTGTTTAATGGAAACC+CGG | - | chr3_3:44916748-44916767 | Msa0453940:intron | 40.0% | |
| TTAATGGAAACCCGGTTCAA+TGG | - | chr3_3:44916756-44916775 | Msa0453940:intron | 40.0% | |
| TGACTATCAACCATTGAACC+GGG | + | chr3_3:44916769-44916788 | None:intergenic | 40.0% | |
| !! | GGTTCAATGGTTGATAGTCA+AGG | - | chr3_3:44916769-44916788 | Msa0453940:intron | 40.0% |
| !! | AATGGTTGATAGTCAAGGGT+GGG | - | chr3_3:44916774-44916793 | Msa0453940:intron | 40.0% |
| !! | GGATTGCTTCTGTTTCTATC+CGG | - | chr3_3:44916828-44916847 | Msa0453940:intron | 40.0% |
| ! | GGAGTATAGGAGATTTTCGA+AGG | - | chr3_3:44916900-44916919 | Msa0453940:intron | 40.0% |
| TGACTGTTTGGGAGAGTTTA+TGG | + | chr3_3:44917108-44917127 | None:intergenic | 40.0% | |
| ! | AGGTAAAGTTTCTGGGGATT+TGG | - | chr3_3:44917369-44917388 | Msa0453940:intron | 40.0% |
| TCTGACCAAGTAGAAACCAA+TGG | + | chr3_3:44917407-44917426 | None:intergenic | 40.0% | |
| GGTCAAAGCTGCAATTAAGT+TGG | - | chr3_3:44917663-44917682 | Msa0453940:intron | 40.0% | |
| ! | GGTTGAGTCTAGCAAGTTTT+TGG | - | chr3_3:44917703-44917722 | Msa0453940:intron | 40.0% |
| ACACTGTAACACTGACACAA+TGG | + | chr3_3:44917743-44917762 | None:intergenic | 40.0% | |
| TTCGTGTTAATCACGTGGAA+TGG | - | chr3_3:44917944-44917963 | Msa0453940:CDS | 40.0% | |
| TTCACCTAATTTCAGGCCAA+TGG | - | chr3_3:44918159-44918178 | Msa0453940:intron | 40.0% | |
| TTCTTCAGACTCATGGTTGA+AGG | - | chr3_3:44918186-44918205 | Msa0453940:intron | 40.0% | |
| GTCATGCATCTGCTATAAGA+AGG | - | chr3_3:44918299-44918318 | Msa0453940:intron | 40.0% | |
| GGATTGCAAGCTATCTAATC+GGG | + | chr3_3:44918344-44918363 | None:intergenic | 40.0% | |
| GGGATTGCAAGCTATCTAAT+CGG | + | chr3_3:44918345-44918364 | None:intergenic | 40.0% | |
| CAGCTGAATACTCACTTTAC+AGG | + | chr3_3:44918382-44918401 | None:intergenic | 40.0% | |
| GCACCATCCTTTCTTAATCA+GGG | + | chr3_3:44918412-44918431 | None:intergenic | 40.0% | |
| AGCACCATCCTTTCTTAATC+AGG | + | chr3_3:44918413-44918432 | None:intergenic | 40.0% | |
| !! | ATGGTGCTATTACAGCAATG+AGG | - | chr3_3:44918425-44918444 | Msa0453940:intron | 40.0% |
| TACTACAGGACATTGAGTTC+AGG | + | chr3_3:44918452-44918471 | None:intergenic | 40.0% | |
| ! | TGTCTTCTTTTGAGCTGCAA+AGG | - | chr3_3:44918607-44918626 | Msa0453940:intron | 40.0% |
| AGGACAACCTTGCAAATTTG+AGG | - | chr3_3:44918702-44918721 | Msa0453940:intron | 40.0% | |
| CCTTTGACCTCAAATTTGCA+AGG | + | chr3_3:44918712-44918731 | None:intergenic | 40.0% | |
| ! | CCTTGCAAATTTGAGGTCAA+AGG | - | chr3_3:44918709-44918728 | Msa0453940:intron | 40.0% |
| GAGGTCAAAGGTTAACCAAA+TGG | - | chr3_3:44918721-44918740 | Msa0453940:intron | 40.0% | |
| !! | GCAAATAGGGATAGTTTGCT+CGG | - | chr3_3:44918770-44918789 | Msa0453940:intron | 40.0% |
| !! | CAAATAGGGATAGTTTGCTC+GGG | - | chr3_3:44918771-44918790 | Msa0453940:intron | 40.0% |
| !! | ACTGTTGGCTTGGATAACAA+TGG | - | chr3_3:44918824-44918843 | Msa0453940:intron | 40.0% |
| !! | GCTTTGGATATTGATTTCGG+AGG | - | chr3_3:44918924-44918943 | Msa0453940:intron | 40.0% |
| TGTCAGATTGGTGAGTATGT+GGG | + | chr3_3:44919390-44919409 | None:intergenic | 40.0% | |
| ATGTCAGATTGGTGAGTATG+TGG | + | chr3_3:44919391-44919410 | None:intergenic | 40.0% | |
| !!! | ATTGTCATTTTTCGGCTAGG+TGG | - | chr3_3:44919657-44919676 | Msa0453940:intron | 40.0% |
| !!! | TTGTCATTTTTCGGCTAGGT+GGG | - | chr3_3:44919658-44919677 | Msa0453940:intron | 40.0% |
| TGCATGCTATTAGCAGTGAT+TGG | - | chr3_3:44919902-44919921 | Msa0453940:intron | 40.0% | |
| !! | AGTGATTGGTATAGTGGGTT+TGG | - | chr3_3:44919916-44919935 | Msa0453940:intron | 40.0% |
| !! | TGGGTTTGGTTCTTGTCATA+TGG | - | chr3_3:44919930-44919949 | Msa0453940:intron | 40.0% |
| !! | GGAAAAGTTTGCTGAGTTGT+GGG | + | chr3_3:44919988-44920007 | None:intergenic | 40.0% |
| AAGAGAATAGCGTAACGGTG+CGG | + | chr3_3:44916087-44916106 | None:intergenic | 45.0% | |
| !!! | GATCGATACGGTGTCGTTTT+AGG | + | chr3_3:44916110-44916129 | None:intergenic | 45.0% |
| ! | TTGTGATCATGAGGTGATGG+TGG | - | chr3_3:44916459-44916478 | Msa0453940:intron | 45.0% |
| ! | ACTGAGGCACTATAGCATAG+TGG | + | chr3_3:44916664-44916683 | None:intergenic | 45.0% |
| ATGTTAAACAGCGGCTACTG+AGG | + | chr3_3:44916680-44916699 | None:intergenic | 45.0% | |
| !! | CAATGGTTGATAGTCAAGGG+TGG | - | chr3_3:44916773-44916792 | Msa0453940:intron | 45.0% |
| !!! | TTCTGGGGATTTGGCTCTTT+TGG | - | chr3_3:44917378-44917397 | Msa0453940:intron | 45.0% |
| ATTACACACTTGTATGCCGG+TGG | - | chr3_3:44917791-44917810 | Msa0453940:intron | 45.0% | |
| TTACACACTTGTATGCCGGT+GGG | - | chr3_3:44917792-44917811 | Msa0453940:intron | 45.0% | |
| ! | GATGCCATTGGCCTGAAATT+AGG | + | chr3_3:44918166-44918185 | None:intergenic | 45.0% |
| GAGTCTGAAGAAGATGCCAT+TGG | + | chr3_3:44918178-44918197 | None:intergenic | 45.0% | |
| TGGCATCTTCTTCAGACTCA+TGG | - | chr3_3:44918179-44918198 | Msa0453940:intron | 45.0% | |
| !! | TGTGTTTCTGGTCCAGATGA+AGG | + | chr3_3:44918277-44918296 | None:intergenic | 45.0% |
| GATGCATGACGTTGTGTTTC+TGG | + | chr3_3:44918289-44918308 | None:intergenic | 45.0% | |
| ACAGTTCTGCTCATTGCATC+TGG | + | chr3_3:44918809-44918828 | None:intergenic | 45.0% | |
| GATGCAATGAGCAGAACTGT+TGG | - | chr3_3:44918809-44918828 | Msa0453940:intron | 45.0% | |
| ! | AATGAGCAGAACTGTTGGCT+TGG | - | chr3_3:44918814-44918833 | Msa0453940:intron | 45.0% |
| !! | ATGGACTTGTTGGTCTGCAA+CGG | - | chr3_3:44918843-44918862 | Msa0453940:intron | 45.0% |
| CTGCAACGGCAAGTTATGAA+AGG | - | chr3_3:44918857-44918876 | Msa0453940:intron | 45.0% | |
| AGATGAGGGCCTTGAGAAAT+TGG | - | chr3_3:44918966-44918985 | Msa0453940:intron | 45.0% | |
| GTTGTACGCCATGTCATTCA+TGG | - | chr3_3:44919496-44919515 | Msa0453940:intron | 45.0% | |
| CCATGTCATTCATGGATCTG+CGG | - | chr3_3:44919504-44919523 | Msa0453940:intron | 45.0% | |
| CATGTCATTCATGGATCTGC+GGG | - | chr3_3:44919505-44919524 | Msa0453940:intron | 45.0% | |
| ATGTCATTCATGGATCTGCG+GGG | - | chr3_3:44919506-44919525 | Msa0453940:intron | 45.0% | |
| !!! | TGTCATTTTTCGGCTAGGTG+GGG | - | chr3_3:44919659-44919678 | Msa0453940:intron | 45.0% |
| ! | ACAGAGAGTGCAGAAGAACT+TGG | - | chr3_3:44919838-44919857 | Msa0453940:intron | 45.0% |
| GGTTCTTGTCATATGGCTTC+TGG | - | chr3_3:44919937-44919956 | Msa0453940:intron | 45.0% | |
| !! | GGGAAAAGTTTGCTGAGTTG+TGG | + | chr3_3:44919989-44920008 | None:intergenic | 45.0% |
| !! | ATTAAAAAAAAAACTTAAAA+GGG | + | chr3_3:44919749-44919768 | None:intergenic | 5.0% |
| !! | AATTAAAAAAAAAACTTAAA+AGG | + | chr3_3:44919750-44919769 | None:intergenic | 5.0% |
| TGGATTGTGCTACGTCTACG+CGG | + | chr3_3:44915977-44915996 | None:intergenic | 50.0% | |
| !! | GTTGGGATTTCGTGATGGGT+CGG | - | chr3_3:44916413-44916432 | Msa0453940:intron | 50.0% |
| !! | TGATCATGAGGTGATGGTGG+TGG | - | chr3_3:44916462-44916481 | Msa0453940:intron | 50.0% |
| !! | GATCATGAGGTGATGGTGGT+GGG | - | chr3_3:44916463-44916482 | Msa0453940:intron | 50.0% |
| ! | TGGATGCCAGCGTTTGTTGA+TGG | - | chr3_3:44916724-44916743 | Msa0453940:intron | 50.0% |
| ! | GGATGCCAGCGTTTGTTGAT+GGG | - | chr3_3:44916725-44916744 | Msa0453940:intron | 50.0% |
| GGAGGTGGCAGTTATTCATG+AGG | - | chr3_3:44916795-44916814 | Msa0453940:intron | 50.0% | |
| !! | TTGGCTCTTTTGGCAGCCAT+TGG | - | chr3_3:44917388-44917407 | Msa0453940:intron | 50.0% |
| !! | GGCAGCCATTGGTTTCTACT+TGG | - | chr3_3:44917399-44917418 | Msa0453940:CDS | 50.0% |
| TACACACTTGTATGCCGGTG+GGG | - | chr3_3:44917793-44917812 | Msa0453940:intron | 50.0% | |
| !! | GCTGTTTTGAGCAGCTGAGT+AGG | - | chr3_3:44917820-44917839 | Msa0453940:intron | 50.0% |
| GAAGGAGATGAATCGTCGCA+AGG | - | chr3_3:44918682-44918701 | Msa0453940:intron | 50.0% | |
| TGAGGGCCTTGAGAAATTGG+AGG | - | chr3_3:44918969-44918988 | Msa0453940:intron | 50.0% | |
| CGGTCTCCTCCAATTTCTCA+AGG | + | chr3_3:44918978-44918997 | None:intergenic | 50.0% | |
| ATGTCACAGATTCTCGGCTG+AGG | - | chr3_3:44919180-44919199 | Msa0453940:intron | 50.0% | |
| TGTCACAGATTCTCGGCTGA+GGG | - | chr3_3:44919181-44919200 | Msa0453940:intron | 50.0% | |
| CCGCAGATCCATGAATGACA+TGG | + | chr3_3:44919507-44919526 | None:intergenic | 50.0% | |
| TTCATGGATCTGCGGGGATT+TGG | - | chr3_3:44919512-44919531 | Msa0453940:intron | 50.0% | |
| TCATGGATCTGCGGGGATTT+GGG | - | chr3_3:44919513-44919532 | Msa0453940:intron | 50.0% | |
| !!! | GTCATTTTTCGGCTAGGTGG+GGG | - | chr3_3:44919660-44919679 | Msa0453940:intron | 50.0% |
| GGATTGTGCTACGTCTACGC+GGG | + | chr3_3:44915976-44915995 | None:intergenic | 55.0% | |
| !! | TAAACGACAACGGTGCCGCT+CGG | - | chr3_3:44916056-44916075 | Msa0453940:three_prime_UTR | 55.0% |
| CCACTCCCATCAACAAACGC+TGG | + | chr3_3:44916733-44916752 | None:intergenic | 55.0% | |
| ! | CCAGCGTTTGTTGATGGGAG+TGG | - | chr3_3:44916730-44916749 | Msa0453940:intron | 55.0% |
| !! | GGTTGATAGTCAAGGGTGGG+AGG | - | chr3_3:44916777-44916796 | Msa0453940:intron | 55.0% |
| TGATAGTCAAGGGTGGGAGG+TGG | - | chr3_3:44916780-44916799 | Msa0453940:intron | 55.0% | |
| GATAGAGAAGGCTTGGCTGC+TGG | - | chr3_3:44917270-44917289 | Msa0453940:CDS | 55.0% | |
| ACACACTTGTATGCCGGTGG+GGG | - | chr3_3:44917794-44917813 | Msa0453940:intron | 55.0% | |
| TCAAAACAGCAACCCCCCAC+CGG | + | chr3_3:44917810-44917829 | None:intergenic | 55.0% | |
| GCTGAGTAGGCTGCAATCTC+TGG | - | chr3_3:44917833-44917852 | Msa0453940:intron | 55.0% | |
| CACACTTGTATGCCGGTGGG+GGG | - | chr3_3:44917795-44917814 | Msa0453940:intron | 60.0% | |
| TTTCGGCTAGGTGGGGGTGA+TGG | - | chr3_3:44919666-44919685 | Msa0453940:intron | 60.0% | |
| TTCGGCTAGGTGGGGGTGAT+GGG | - | chr3_3:44919667-44919686 | Msa0453940:intron | 60.0% | |
| ! | AACGGTGCGGTAGCACCGAG+CGG | + | chr3_3:44916074-44916093 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 44915959 | 44920310 | 44915959 | ID=Msa0453940;Name=Msa0453940 |
| chr3_3 | mRNA | 44915959 | 44920310 | 44915959 | ID=Msa0453940-mRNA-1;Parent=Msa0453940;Name=Msa0453940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=252|1|1|1|0.8|0.66|6|337|229 |
| chr3_3 | exon | 44915959 | 44916427 | 44915959 | ID=Msa0453940-mRNA-1:exon:8264;Parent=Msa0453940-mRNA-1 |
| chr3_3 | exon | 44917067 | 44917111 | 44917067 | ID=Msa0453940-mRNA-1:exon:8263;Parent=Msa0453940-mRNA-1 |
| chr3_3 | exon | 44917207 | 44917307 | 44917207 | ID=Msa0453940-mRNA-1:exon:8262;Parent=Msa0453940-mRNA-1 |
| chr3_3 | exon | 44917391 | 44917593 | 44917391 | ID=Msa0453940-mRNA-1:exon:8261;Parent=Msa0453940-mRNA-1 |
| chr3_3 | exon | 44917883 | 44918095 | 44917883 | ID=Msa0453940-mRNA-1:exon:8260;Parent=Msa0453940-mRNA-1 |
| chr3_3 | exon | 44920063 | 44920310 | 44920063 | ID=Msa0453940-mRNA-1:exon:8259;Parent=Msa0453940-mRNA-1 |
| chr3_3 | five_prime_UTR | 44920063 | 44920310 | 44920063 | ID=Msa0453940-mRNA-1:five_prime_utr;Parent=Msa0453940-mRNA-1 |
| chr3_3 | five_prime_UTR | 44918092 | 44918095 | 44918092 | ID=Msa0453940-mRNA-1:five_prime_utr;Parent=Msa0453940-mRNA-1 |
| chr3_3 | CDS | 44917883 | 44918091 | 44917883 | ID=Msa0453940-mRNA-1:cds;Parent=Msa0453940-mRNA-1 |
| chr3_3 | CDS | 44917391 | 44917593 | 44917391 | ID=Msa0453940-mRNA-1:cds;Parent=Msa0453940-mRNA-1 |
| chr3_3 | CDS | 44917207 | 44917307 | 44917207 | ID=Msa0453940-mRNA-1:cds;Parent=Msa0453940-mRNA-1 |
| chr3_3 | CDS | 44917067 | 44917111 | 44917067 | ID=Msa0453940-mRNA-1:cds;Parent=Msa0453940-mRNA-1 |
| chr3_3 | CDS | 44916296 | 44916427 | 44916296 | ID=Msa0453940-mRNA-1:cds;Parent=Msa0453940-mRNA-1 |
| chr3_3 | three_prime_UTR | 44915959 | 44916295 | 44915959 | ID=Msa0453940-mRNA-1:three_prime_utr;Parent=Msa0453940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
