AlfalfaGEDB | Msa1208920

M. sativa cultivar zhongmu-4 / Msa1208920

KEGG: -
GO: GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700
PFAM: PF16974.8

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1208920	sp\|Q9FGS5\|NRT31_ARATH	51.675	209	90	5	1	202	1	205	1.69e-65	203

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1208920	I3SMV0	98.058	206	4	0	1	206	1	206	9.18e-150	423

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030710	Msa1208920	-0.833401	5.448883e-56	-8.615850e-47
Msa0034590	Msa1208920	-0.801652	8.140645e-49	-8.615850e-47
Msa0046680	Msa1208920	0.821578	3.747788e-53	-8.615850e-47
Msa0078110	Msa1208920	-0.832883	7.331007e-56	-8.615850e-47
Msa0648840	Msa1208920	-0.811881	5.608387e-51	-8.615850e-47
Msa0657260	Msa1208920	0.842035	3.306564e-58	-8.615850e-47
Msa0701490	Msa1208920	0.852608	4.129098e-61	-8.615850e-47
Msa0701560	Msa1208920	0.852369	4.829259e-61	-8.615850e-47
Msa0744550	Msa1208920	0.820075	8.305062e-53	-8.615850e-47
Msa0744560	Msa1208920	0.814841	1.254442e-51	-8.615850e-47
Msa0753410	Msa1208920	0.819532	1.105431e-52	-8.615850e-47
Msa0772350	Msa1208920	0.806465	8.120488e-50	-8.615850e-47
Msa0788490	Msa1208920	-0.818226	2.189692e-52	-8.615850e-47
Msa0795330	Msa1208920	0.809691	1.669399e-50	-8.615850e-47
Msa0816390	Msa1208920	-0.815285	9.997144e-52	-8.615850e-47
Msa0826360	Msa1208920	0.842582	2.368480e-58	-8.615850e-47
Msa0826370	Msa1208920	0.808228	3.433188e-50	-8.615850e-47
Msa0129290	Msa1208920	0.815163	1.064194e-51	-8.615850e-47
Msa0131230	Msa1208920	-0.803468	3.436979e-49	-8.615850e-47
Msa0143830	Msa1208920	0.800432	1.445443e-48	-8.615850e-47
Msa0191470	Msa1208920	0.801868	7.348463e-49	-8.615850e-47
Msa0369770	Msa1208920	-0.801559	8.504395e-49	-8.615850e-47
Msa0421080	Msa1208920	0.831966	1.236867e-55	-8.615850e-47
Msa0466850	Msa1208920	0.822429	2.380495e-53	-8.615850e-47
Msa0467890	Msa1208920	-0.801742	7.801592e-49	-8.615850e-47
Msa0467970	Msa1208920	-0.807072	6.042102e-50	-8.615850e-47
Msa0480540	Msa1208920	0.818473	1.924492e-52	-8.615850e-47
Msa0480550	Msa1208920	0.812941	3.291192e-51	-8.615850e-47
Msa1023430	Msa1208920	0.809219	2.108315e-50	-8.615850e-47
Msa1061840	Msa1208920	0.803797	2.936776e-49	-8.615850e-47
Msa1084360	Msa1208920	0.800142	1.655913e-48	-8.615850e-47
Msa0271700	Msa1208920	0.817199	3.732910e-52	-8.615850e-47
Msa0271720	Msa1208920	0.805844	1.097204e-49	-8.615850e-47
Msa1107510	Msa1208920	0.804908	1.723232e-49	-8.615850e-47
Msa1151070	Msa1208920	0.806700	7.240857e-50	-8.615850e-47
Msa1208840	Msa1208920	0.942022	1.497788e-101	-8.615850e-47
Msa1208910	Msa1208920	0.801842	7.439988e-49	-8.615850e-47
Msa1208920	Msa1223560	0.809848	1.544603e-50	-8.615850e-47
Msa1208920	Msa1235960	-0.801686	8.008543e-49	-8.615850e-47
Msa1208920	Msa1235990	-0.800796	1.218008e-48	-8.615850e-47
Msa1208920	Msa1245890	0.922935	5.143000e-89	-8.615850e-47
Msa1208920	Msa1259030	0.922474	9.385237e-89	-8.615850e-47
Msa1208920	Msa1263460	-0.803154	3.991358e-49	-8.615850e-47
Msa1208920	Msa1263500	0.801292	9.644645e-49	-8.615850e-47
Msa1208920	Msa1387610	0.801019	1.097092e-48	-8.615850e-47
Msa1208920	Msa1387650	-0.800670	1.292261e-48	-8.615850e-47
Msa1208920	Msa1419200	0.934907	1.949776e-96	-8.615850e-47
Msa1208920	Msa1419210	0.844186	8.836267e-59	-8.615850e-47
Msa1208920	Msa1449470	0.806796	6.910429e-50	-8.615850e-47
Msa1208920	Msa1459930	0.846430	2.182992e-59	-8.615850e-47
Msa0509530	Msa1208920	-0.801135	1.038856e-48	-8.615850e-47
Msa0513670	Msa1208920	0.821649	3.609727e-53	-8.615850e-47
Msa0514280	Msa1208920	-0.822317	2.527185e-53	-8.615850e-47
Msa0565120	Msa1208920	0.843943	1.026308e-58	-8.615850e-47
Msa0856790	Msa1208920	-0.812472	4.168601e-51	-8.615850e-47
Msa0865830	Msa1208920	0.828326	9.568563e-55	-8.615850e-47
Msa0879940	Msa1208920	-0.821956	3.063517e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1208920	MtrunA17_Chr4g0058311	98.058	206	4	0	1	206	1	206	1.77e-153	423
Msa1208920	MtrunA17_Chr4g0058331	97.573	206	5	0	1	206	1	206	4.54e-153	422

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1208920	AT5G50200.1	51.675	209	90	5	1	202	1	205	1.72e-66	203
Msa1208920	AT5G50200.3	51.675	209	90	5	1	202	1	205	1.72e-66	203
Msa1208920	AT5G50200.2	51.675	209	90	5	1	202	1	205	1.72e-66	203
Msa1208920	AT4G24715.1	49.758	207	96	5	1	202	23	226	2.39e-64	199

Find 63 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAGCACAACTTCAGCTTTA+TGG	0.134503	8_1:+67272016	None:intergenic
ATCTACGCAGTTCTGTTATC+TGG	0.302271	8_1:-67272110	Msa1208920:intron
TAAATGAATGTCATAGAAAT+AGG	0.311940	8_1:-67271395	Msa1208920:three_prime_UTR
ACTTACCTTGTCCCTGCTTA+GGG	0.312527	8_1:+67272661	None:intergenic
TTATGCCTTATATATGTTGT+AGG	0.313435	8_1:-67271558	Msa1208920:three_prime_UTR
AGAGAAAAGCCAATTGGAAT+TGG	0.326415	8_1:+67272837	None:intergenic
TACTTACCTTGTCCCTGCTT+AGG	0.355450	8_1:+67272660	None:intergenic
TCTTACCTGCGTTCGTGGTT+TGG	0.359625	8_1:+67271778	None:intergenic
TGTTTAGCTGAACTTTGTTA+TGG	0.379387	8_1:-67272732	Msa1208920:CDS
ACTGAATTCAATTACTGCTT+TGG	0.387524	8_1:+67271621	None:intergenic
CCAGGCCTACAACATATATA+AGG	0.400830	8_1:+67271553	None:intergenic
AACGATAAGGAAGTGGCTTA+TGG	0.411170	8_1:-67271801	Msa1208920:CDS
TAGGGGAAGCTGTGACTTCA+AGG	0.413086	8_1:+67272679	None:intergenic
TGCATTTGATTCCAACGATA+AGG	0.421816	8_1:-67271814	Msa1208920:CDS
AATATCATTCCAATTCCAAT+TGG	0.435193	8_1:-67272846	Msa1208920:five_prime_UTR
CTATAGCTCCTATGACTGTA+TGG	0.442506	8_1:-67271472	Msa1208920:three_prime_UTR
AGTGAAAACCATACAGTCAT+AGG	0.447576	8_1:+67271464	None:intergenic
CAGTGACATAGGAAACTTCA+TGG	0.450404	8_1:-67271602	Msa1208920:three_prime_UTR
GCTTTCTCAGTTGTGTCCCT+AGG	0.459425	8_1:-67271681	Msa1208920:CDS
AGTCACAGCTTCCCCTAAGC+AGG	0.463378	8_1:-67272673	Msa1208920:CDS
CCTTATATATGTTGTAGGCC+TGG	0.464256	8_1:-67271553	Msa1208920:three_prime_UTR
GACTTCAGAGAAAAGCCAAT+TGG	0.464343	8_1:+67272831	None:intergenic
AAAGAAAAGTCAACTGTGAA+AGG	0.477653	8_1:+67272803	None:intergenic
AGCTGAACTTTGTTATGGAA+AGG	0.496120	8_1:-67272727	Msa1208920:CDS
ATAAGCCACTTCCTTATCGT+TGG	0.499427	8_1:+67271803	None:intergenic
GGTACTCTTACCTGCGTTCG+TGG	0.508691	8_1:+67271773	None:intergenic
GTAATTGAATTCAGTGACAT+AGG	0.512101	8_1:-67271613	Msa1208920:exon
AGACCGAGGATGAACTCTCT+AGG	0.513840	8_1:-67271959	Msa1208920:CDS
TATGATGAGTCTGTTCCAGC+TGG	0.517572	8_1:+67272044	None:intergenic
TGATTCCAACGATAAGGAAG+TGG	0.521314	8_1:-67271808	Msa1208920:CDS
CTAAACAAGACCTTCCCAGC+TGG	0.523958	8_1:-67272059	Msa1208920:CDS
GTTGGAAGCATTGTAGGGCA+TGG	0.526614	8_1:+67271908	None:intergenic
ATGTCATAGAAATAGGAGTC+AGG	0.533633	8_1:-67271388	Msa1208920:three_prime_UTR
AAGAAAAGTCAACTGTGAAA+GGG	0.535727	8_1:+67272804	None:intergenic
TGAGTCTGTTCCAGCTGGGA+AGG	0.539300	8_1:+67272049	None:intergenic
TGCGTTGATCTCAAACAAGT+TGG	0.540469	8_1:+67271752	None:intergenic
CTACAATGCTTCCAACAAAA+CGG	0.541838	8_1:-67271901	Msa1208920:CDS
GTCCCTAGAGAGTTCATCCT+CGG	0.558273	8_1:+67271956	None:intergenic
TAGACAAAATCAGTGGAACA+TGG	0.559795	8_1:-67272085	Msa1208920:CDS
GACCGAGGATGAACTCTCTA+GGG	0.561011	8_1:-67271958	Msa1208920:CDS
AGGGGAAGCTGTGACTTCAA+GGG	0.577454	8_1:+67272680	None:intergenic
CTTACCTTGTCCCTGCTTAG+GGG	0.578473	8_1:+67272662	None:intergenic
ACTGATAATATTATTTAACC+AGG	0.587057	8_1:+67271535	None:intergenic
CAATATAGAAGAACACACCT+AGG	0.601286	8_1:+67271664	None:intergenic
TTTGAGATCAACGCAATCAG+TGG	0.604199	8_1:-67271744	Msa1208920:CDS
AGACAAAATCAGTGGAACAT+GGG	0.618150	8_1:-67272084	Msa1208920:CDS
ATCGTTGGAATCAAATGCAT+AGG	0.623735	8_1:+67271818	None:intergenic
GTCACAGCTTCCCCTAAGCA+GGG	0.629784	8_1:-67272672	Msa1208920:CDS
GCTTCCCCTAAGCAGGGACA+AGG	0.636634	8_1:-67272666	Msa1208920:intron
GCGCTGAATCAACCACTCGA+AGG	0.649799	8_1:+67271872	None:intergenic
CCTCGGTCTTTCTCCAAGCG+CGG	0.651070	8_1:+67271973	None:intergenic
AATATAGAAGAACACACCTA+GGG	0.653049	8_1:+67271665	None:intergenic
TATGGCAGCACACAAGCTTG+TGG	0.654698	8_1:-67272775	Msa1208920:CDS
TATGGCCAAACCACGAACGC+AGG	0.658383	8_1:-67271783	Msa1208920:CDS
TCTGGAGTAGACAAAATCAG+TGG	0.660740	8_1:-67272092	Msa1208920:CDS
TGAGAAAGCACTGAAGACAA+CGG	0.661115	8_1:+67271695	None:intergenic
AAACGGTTCAAACCTTCGAG+TGG	0.663100	8_1:-67271884	Msa1208920:CDS
CGTACAAAGTACGTTGCCTG+AGG	0.678441	8_1:+67271843	None:intergenic
AGCAGATATCAAGAGTCGCG+TGG	0.681698	8_1:+67271718	None:intergenic
ATGATGAGTCTGTTCCAGCT+GGG	0.682275	8_1:+67272045	None:intergenic
AGATATCAAGAGTCGCGTGG+CGG	0.700580	8_1:+67271721	None:intergenic
CCGCGCTTGGAGAAAGACCG+AGG	0.703551	8_1:-67271973	Msa1208920:CDS
AAAGCTGAAGTTGTGCTACG+CGG	0.733243	8_1:-67272012	Msa1208920:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GATAAGACATTTATTTATTA+AGG	+	chr8_1:67271956-67271975	None:intergenic	15.0%
!!	GATAAGACATTTATTTATTA+AGG	+	chr8_1:67271956-67271975	None:intergenic	15.0%
!!	TTATTCAAATTCAAGAAAAG+AGG	+	chr8_1:67271750-67271769	None:intergenic	20.0%
!!!	GAACATTTTTCAAGAAATTT+TGG	-	chr8_1:67271786-67271805	Msa1208920:CDS	20.0%
!!	TGTTCTTCTATATTGAAAAA+AGG	-	chr8_1:67272520-67272539	Msa1208920:intron	20.0%
!!	TTCTATATTGAAAAAAGGAA+GGG	-	chr8_1:67272525-67272544	Msa1208920:intron	20.0%
!!	ACTGATAATATTATTTAACC+AGG	+	chr8_1:67272644-67272663	None:intergenic	20.0%
!!	CATGAAATATGAAAAACTTA+GGG	+	chr8_1:67272678-67272697	None:intergenic	20.0%
!!	TAAATGAATGTCATAGAAAT+AGG	-	chr8_1:67272781-67272800	Msa1208920:exon	20.0%
!!	TTATTCAAATTCAAGAAAAG+AGG	+	chr8_1:67271750-67271769	None:intergenic	20.0%
!!!	GAACATTTTTCAAGAAATTT+TGG	-	chr8_1:67271786-67271805	Msa1208920:CDS	20.0%
!!	TGTTCTTCTATATTGAAAAA+AGG	-	chr8_1:67272520-67272539	Msa1208920:intron	20.0%
!!	TTCTATATTGAAAAAAGGAA+GGG	-	chr8_1:67272525-67272544	Msa1208920:intron	20.0%
!!	ACTGATAATATTATTTAACC+AGG	+	chr8_1:67272644-67272663	None:intergenic	20.0%
!!	CATGAAATATGAAAAACTTA+GGG	+	chr8_1:67272678-67272697	None:intergenic	20.0%
!!	TAAATGAATGTCATAGAAAT+AGG	-	chr8_1:67272781-67272800	Msa1208920:exon	20.0%
!	AATATCATTCCAATTCCAAT+TGG	-	chr8_1:67271330-67271349	Msa1208920:three_prime_UTR	25.0%
!!!	TTGACTTTTCTTTAGAACTA+TGG	-	chr8_1:67271383-67271402	Msa1208920:three_prime_UTR	25.0%
!	ATAATCACATAAATCAAGGT+TGG	+	chr8_1:67271720-67271739	None:intergenic	25.0%
!	GAACATAATCACATAAATCA+AGG	+	chr8_1:67271724-67271743	None:intergenic	25.0%
!	TTCTTGAAAAATGTTCATAC+TGG	+	chr8_1:67271782-67271801	None:intergenic	25.0%
!	CTTAATAAATAGTAACACAC+CGG	+	chr8_1:67271828-67271847	None:intergenic	25.0%
!	TACATTACAAATGATCACAA+AGG	-	chr8_1:67271880-67271899	Msa1208920:CDS	25.0%
!	CAAGTATGCAATCATAATAT+AGG	+	chr8_1:67271978-67271997	None:intergenic	25.0%
!!	AAGCTGATTAAACTCAATTT+TGG	-	chr8_1:67272035-67272054	Msa1208920:CDS	25.0%
!	CTTCTATATTGAAAAAAGGA+AGG	-	chr8_1:67272524-67272543	Msa1208920:intron	25.0%
!	TTATGCCTTATATATGTTGT+AGG	-	chr8_1:67272618-67272637	Msa1208920:intron	25.0%
!	CCATGAAATATGAAAAACTT+AGG	+	chr8_1:67272679-67272698	None:intergenic	25.0%
!!	CCTAAGTTTTTCATATTTCA+TGG	-	chr8_1:67272676-67272695	Msa1208920:CDS	25.0%
!!	AGTTTTTCATATTTCATGGA+TGG	-	chr8_1:67272680-67272699	Msa1208920:CDS	25.0%
!	AATATCATTCCAATTCCAAT+TGG	-	chr8_1:67271330-67271349	Msa1208920:three_prime_UTR	25.0%
!!!	TTGACTTTTCTTTAGAACTA+TGG	-	chr8_1:67271383-67271402	Msa1208920:three_prime_UTR	25.0%
!	ATAATCACATAAATCAAGGT+TGG	+	chr8_1:67271720-67271739	None:intergenic	25.0%
!	GAACATAATCACATAAATCA+AGG	+	chr8_1:67271724-67271743	None:intergenic	25.0%
!	TTCTTGAAAAATGTTCATAC+TGG	+	chr8_1:67271782-67271801	None:intergenic	25.0%
!	CTTAATAAATAGTAACACAC+CGG	+	chr8_1:67271828-67271847	None:intergenic	25.0%
!	TACATTACAAATGATCACAA+AGG	-	chr8_1:67271880-67271899	Msa1208920:CDS	25.0%
!	CAAGTATGCAATCATAATAT+AGG	+	chr8_1:67271978-67271997	None:intergenic	25.0%
!!	AAGCTGATTAAACTCAATTT+TGG	-	chr8_1:67272035-67272054	Msa1208920:CDS	25.0%
!	CTTCTATATTGAAAAAAGGA+AGG	-	chr8_1:67272524-67272543	Msa1208920:intron	25.0%
!	TTATGCCTTATATATGTTGT+AGG	-	chr8_1:67272618-67272637	Msa1208920:intron	25.0%
!	CCATGAAATATGAAAAACTT+AGG	+	chr8_1:67272679-67272698	None:intergenic	25.0%
!!	CCTAAGTTTTTCATATTTCA+TGG	-	chr8_1:67272676-67272695	Msa1208920:CDS	25.0%
!!	AGTTTTTCATATTTCATGGA+TGG	-	chr8_1:67272680-67272699	Msa1208920:CDS	25.0%
	AAGAAAAGTCAACTGTGAAA+GGG	+	chr8_1:67271375-67271394	None:intergenic	30.0%
	AAAGAAAAGTCAACTGTGAA+AGG	+	chr8_1:67271376-67271395	None:intergenic	30.0%
	TGTTTAGCTGAACTTTGTTA+TGG	-	chr8_1:67271444-67271463	Msa1208920:three_prime_UTR	30.0%
	TCAAATTCAAGAAAAGAGGA+AGG	+	chr8_1:67271746-67271765	None:intergenic	30.0%
!!!	TTTTTCAAGAAATTTTGGCC+AGG	-	chr8_1:67271791-67271810	Msa1208920:CDS	30.0%
!	CGGTGTGTTACTATTTATTA+AGG	-	chr8_1:67271826-67271845	Msa1208920:CDS	30.0%
	ATTGAGTTTAATCAGCTTGA+AGG	+	chr8_1:67272033-67272052	None:intergenic	30.0%
	AATATAGAAGAACACACCTA+GGG	+	chr8_1:67272514-67272533	None:intergenic	30.0%
	ACTGAATTCAATTACTGCTT+TGG	+	chr8_1:67272558-67272577	None:intergenic	30.0%
	GTAATTGAATTCAGTGACAT+AGG	-	chr8_1:67272563-67272582	Msa1208920:intron	30.0%
	AAGAAAAGTCAACTGTGAAA+GGG	+	chr8_1:67271375-67271394	None:intergenic	30.0%
	AAAGAAAAGTCAACTGTGAA+AGG	+	chr8_1:67271376-67271395	None:intergenic	30.0%
	TGTTTAGCTGAACTTTGTTA+TGG	-	chr8_1:67271444-67271463	Msa1208920:three_prime_UTR	30.0%
	TCAAATTCAAGAAAAGAGGA+AGG	+	chr8_1:67271746-67271765	None:intergenic	30.0%
!!!	TTTTTCAAGAAATTTTGGCC+AGG	-	chr8_1:67271791-67271810	Msa1208920:CDS	30.0%
!	CGGTGTGTTACTATTTATTA+AGG	-	chr8_1:67271826-67271845	Msa1208920:CDS	30.0%
	ATTGAGTTTAATCAGCTTGA+AGG	+	chr8_1:67272033-67272052	None:intergenic	30.0%
	AATATAGAAGAACACACCTA+GGG	+	chr8_1:67272514-67272533	None:intergenic	30.0%
	ACTGAATTCAATTACTGCTT+TGG	+	chr8_1:67272558-67272577	None:intergenic	30.0%
	GTAATTGAATTCAGTGACAT+AGG	-	chr8_1:67272563-67272582	Msa1208920:intron	30.0%
	AGAGAAAAGCCAATTGGAAT+TGG	+	chr8_1:67271342-67271361	None:intergenic	35.0%
!	AGCTGAACTTTGTTATGGAA+AGG	-	chr8_1:67271449-67271468	Msa1208920:three_prime_UTR	35.0%
!!	GAAATTTTGGCCAGGTTTAA+TGG	-	chr8_1:67271799-67271818	Msa1208920:CDS	35.0%
	TAGACAAAATCAGTGGAACA+TGG	-	chr8_1:67272091-67272110	Msa1208920:CDS	35.0%
	AGACAAAATCAGTGGAACAT+GGG	-	chr8_1:67272092-67272111	Msa1208920:CDS	35.0%
!!!	GTTTTGTTGGAAGCATTGTA+GGG	+	chr8_1:67272276-67272295	None:intergenic	35.0%
	CTACAATGCTTCCAACAAAA+CGG	-	chr8_1:67272275-67272294	Msa1208920:intron	35.0%
	ATCGTTGGAATCAAATGCAT+AGG	+	chr8_1:67272361-67272380	None:intergenic	35.0%
	TGCATTTGATTCCAACGATA+AGG	-	chr8_1:67272362-67272381	Msa1208920:intron	35.0%
	CAATATAGAAGAACACACCT+AGG	+	chr8_1:67272515-67272534	None:intergenic	35.0%
	AGTGAAAACCATACAGTCAT+AGG	+	chr8_1:67272715-67272734	None:intergenic	35.0%
	ATGTCATAGAAATAGGAGTC+AGG	-	chr8_1:67272788-67272807	Msa1208920:exon	35.0%
	AGAGAAAAGCCAATTGGAAT+TGG	+	chr8_1:67271342-67271361	None:intergenic	35.0%
!	AGCTGAACTTTGTTATGGAA+AGG	-	chr8_1:67271449-67271468	Msa1208920:three_prime_UTR	35.0%
!!	GAAATTTTGGCCAGGTTTAA+TGG	-	chr8_1:67271799-67271818	Msa1208920:CDS	35.0%
	TAGACAAAATCAGTGGAACA+TGG	-	chr8_1:67272091-67272110	Msa1208920:CDS	35.0%
	AGACAAAATCAGTGGAACAT+GGG	-	chr8_1:67272092-67272111	Msa1208920:CDS	35.0%
!!!	GTTTTGTTGGAAGCATTGTA+GGG	+	chr8_1:67272276-67272295	None:intergenic	35.0%
	CTACAATGCTTCCAACAAAA+CGG	-	chr8_1:67272275-67272294	Msa1208920:intron	35.0%
	ATCGTTGGAATCAAATGCAT+AGG	+	chr8_1:67272361-67272380	None:intergenic	35.0%
	TGCATTTGATTCCAACGATA+AGG	-	chr8_1:67272362-67272381	Msa1208920:intron	35.0%
	CAATATAGAAGAACACACCT+AGG	+	chr8_1:67272515-67272534	None:intergenic	35.0%
	AGTGAAAACCATACAGTCAT+AGG	+	chr8_1:67272715-67272734	None:intergenic	35.0%
	ATGTCATAGAAATAGGAGTC+AGG	-	chr8_1:67272788-67272807	Msa1208920:exon	35.0%
	GACTTCAGAGAAAAGCCAAT+TGG	+	chr8_1:67271348-67271367	None:intergenic	40.0%
	AAAAATTGCAACGCGACTTG+CGG	+	chr8_1:67271860-67271879	None:intergenic	40.0%
	ATCTACGCAGTTCTGTTATC+TGG	-	chr8_1:67272066-67272085	Msa1208920:CDS	40.0%
!	TCTGGAGTAGACAAAATCAG+TGG	-	chr8_1:67272084-67272103	Msa1208920:CDS	40.0%
	GTAGCACAACTTCAGCTTTA+TGG	+	chr8_1:67272163-67272182	None:intergenic	40.0%
!	GCATGGCTAACATTTTGTGT+TGG	+	chr8_1:67272254-67272273	None:intergenic	40.0%
!!!	CGTTTTGTTGGAAGCATTGT+AGG	+	chr8_1:67272277-67272296	None:intergenic	40.0%
!	GAAGGTTTGAACCGTTTTGT+TGG	+	chr8_1:67272289-67272308	None:intergenic	40.0%
	TGATTCCAACGATAAGGAAG+TGG	-	chr8_1:67272368-67272387	Msa1208920:intron	40.0%
	ATAAGCCACTTCCTTATCGT+TGG	+	chr8_1:67272376-67272395	None:intergenic	40.0%
	AACGATAAGGAAGTGGCTTA+TGG	-	chr8_1:67272375-67272394	Msa1208920:intron	40.0%
!	TGCGTTGATCTCAAACAAGT+TGG	+	chr8_1:67272427-67272446	None:intergenic	40.0%
!	TTTGAGATCAACGCAATCAG+TGG	-	chr8_1:67272432-67272451	Msa1208920:intron	40.0%
!!	TGAGAAAGCACTGAAGACAA+CGG	+	chr8_1:67272484-67272503	None:intergenic	40.0%
	CAGTGACATAGGAAACTTCA+TGG	-	chr8_1:67272574-67272593	Msa1208920:intron	40.0%
	CCAGGCCTACAACATATATA+AGG	+	chr8_1:67272626-67272645	None:intergenic	40.0%
	CCTTATATATGTTGTAGGCC+TGG	-	chr8_1:67272623-67272642	Msa1208920:intron	40.0%
	CTATAGCTCCTATGACTGTA+TGG	-	chr8_1:67272704-67272723	Msa1208920:CDS	40.0%
!	ACTGTATGGTTTTCACTCAC+TGG	-	chr8_1:67272718-67272737	Msa1208920:CDS	40.0%
	GACTTCAGAGAAAAGCCAAT+TGG	+	chr8_1:67271348-67271367	None:intergenic	40.0%
	AAAAATTGCAACGCGACTTG+CGG	+	chr8_1:67271860-67271879	None:intergenic	40.0%
	ATCTACGCAGTTCTGTTATC+TGG	-	chr8_1:67272066-67272085	Msa1208920:CDS	40.0%
!	TCTGGAGTAGACAAAATCAG+TGG	-	chr8_1:67272084-67272103	Msa1208920:CDS	40.0%
	GTAGCACAACTTCAGCTTTA+TGG	+	chr8_1:67272163-67272182	None:intergenic	40.0%
!	GCATGGCTAACATTTTGTGT+TGG	+	chr8_1:67272254-67272273	None:intergenic	40.0%
!!!	CGTTTTGTTGGAAGCATTGT+AGG	+	chr8_1:67272277-67272296	None:intergenic	40.0%
!	GAAGGTTTGAACCGTTTTGT+TGG	+	chr8_1:67272289-67272308	None:intergenic	40.0%
	TGATTCCAACGATAAGGAAG+TGG	-	chr8_1:67272368-67272387	Msa1208920:intron	40.0%
	ATAAGCCACTTCCTTATCGT+TGG	+	chr8_1:67272376-67272395	None:intergenic	40.0%
	AACGATAAGGAAGTGGCTTA+TGG	-	chr8_1:67272375-67272394	Msa1208920:intron	40.0%
!	TGCGTTGATCTCAAACAAGT+TGG	+	chr8_1:67272427-67272446	None:intergenic	40.0%
!	TTTGAGATCAACGCAATCAG+TGG	-	chr8_1:67272432-67272451	Msa1208920:intron	40.0%
!!	TGAGAAAGCACTGAAGACAA+CGG	+	chr8_1:67272484-67272503	None:intergenic	40.0%
	CAGTGACATAGGAAACTTCA+TGG	-	chr8_1:67272574-67272593	Msa1208920:intron	40.0%
	CCAGGCCTACAACATATATA+AGG	+	chr8_1:67272626-67272645	None:intergenic	40.0%
	CCTTATATATGTTGTAGGCC+TGG	-	chr8_1:67272623-67272642	Msa1208920:intron	40.0%
	CTATAGCTCCTATGACTGTA+TGG	-	chr8_1:67272704-67272723	Msa1208920:CDS	40.0%
!	ACTGTATGGTTTTCACTCAC+TGG	-	chr8_1:67272718-67272737	Msa1208920:CDS	40.0%
	ACTTACCTTGTCCCTGCTTA+GGG	+	chr8_1:67271518-67271537	None:intergenic	45.0%
	TACTTACCTTGTCCCTGCTT+AGG	+	chr8_1:67271519-67271538	None:intergenic	45.0%
	ATGATGAGTCTGTTCCAGCT+GGG	+	chr8_1:67272134-67272153	None:intergenic	45.0%
	TATGATGAGTCTGTTCCAGC+TGG	+	chr8_1:67272135-67272154	None:intergenic	45.0%
	AAAGCTGAAGTTGTGCTACG+CGG	-	chr8_1:67272164-67272183	Msa1208920:intron	45.0%
	AAACGGTTCAAACCTTCGAG+TGG	-	chr8_1:67272292-67272311	Msa1208920:intron	45.0%
	ACTTACCTTGTCCCTGCTTA+GGG	+	chr8_1:67271518-67271537	None:intergenic	45.0%
	TACTTACCTTGTCCCTGCTT+AGG	+	chr8_1:67271519-67271538	None:intergenic	45.0%
	ATGATGAGTCTGTTCCAGCT+GGG	+	chr8_1:67272134-67272153	None:intergenic	45.0%
	TATGATGAGTCTGTTCCAGC+TGG	+	chr8_1:67272135-67272154	None:intergenic	45.0%
	AAAGCTGAAGTTGTGCTACG+CGG	-	chr8_1:67272164-67272183	Msa1208920:intron	45.0%
	AAACGGTTCAAACCTTCGAG+TGG	-	chr8_1:67272292-67272311	Msa1208920:intron	45.0%
	TATGGCAGCACACAAGCTTG+TGG	-	chr8_1:67271401-67271420	Msa1208920:three_prime_UTR	50.0%
	AGGGGAAGCTGTGACTTCAA+GGG	+	chr8_1:67271499-67271518	None:intergenic	50.0%
	TAGGGGAAGCTGTGACTTCA+AGG	+	chr8_1:67271500-67271519	None:intergenic	50.0%
	CTTACCTTGTCCCTGCTTAG+GGG	+	chr8_1:67271517-67271536	None:intergenic	50.0%
	TGGCCAGGTTTAATGGAGTC+CGG	-	chr8_1:67271806-67271825	Msa1208920:CDS	50.0%
	ACACCGGACTCCATTAAACC+TGG	+	chr8_1:67271812-67271831	None:intergenic	50.0%
	CTAAACAAGACCTTCCCAGC+TGG	-	chr8_1:67272117-67272136	Msa1208920:intron	50.0%
!!!	AGCGCGGTCTTTTTGGCTTA+GGG	+	chr8_1:67272190-67272209	None:intergenic	50.0%
!!!	AAGCGCGGTCTTTTTGGCTT+AGG	+	chr8_1:67272191-67272210	None:intergenic	50.0%
	TAAGCCAAAAAGACCGCGCT+TGG	-	chr8_1:67272190-67272209	Msa1208920:intron	50.0%
!	TTCTCCAAGCGCGGTCTTTT+TGG	+	chr8_1:67272197-67272216	None:intergenic	50.0%
	AGACCGAGGATGAACTCTCT+AGG	-	chr8_1:67272217-67272236	Msa1208920:intron	50.0%
	GACCGAGGATGAACTCTCTA+GGG	-	chr8_1:67272218-67272237	Msa1208920:intron	50.0%
	GTCCCTAGAGAGTTCATCCT+CGG	+	chr8_1:67272223-67272242	None:intergenic	50.0%
!!	GTTGGAAGCATTGTAGGGCA+TGG	+	chr8_1:67272271-67272290	None:intergenic	50.0%
	CGTACAAAGTACGTTGCCTG+AGG	+	chr8_1:67272336-67272355	None:intergenic	50.0%
	TCTTACCTGCGTTCGTGGTT+TGG	+	chr8_1:67272401-67272420	None:intergenic	50.0%
	AGATATCAAGAGTCGCGTGG+CGG	+	chr8_1:67272458-67272477	None:intergenic	50.0%
	AGCAGATATCAAGAGTCGCG+TGG	+	chr8_1:67272461-67272480	None:intergenic	50.0%
	GCTTTCTCAGTTGTGTCCCT+AGG	-	chr8_1:67272495-67272514	Msa1208920:intron	50.0%
	TATGGCAGCACACAAGCTTG+TGG	-	chr8_1:67271401-67271420	Msa1208920:three_prime_UTR	50.0%
	AGGGGAAGCTGTGACTTCAA+GGG	+	chr8_1:67271499-67271518	None:intergenic	50.0%
	TAGGGGAAGCTGTGACTTCA+AGG	+	chr8_1:67271500-67271519	None:intergenic	50.0%
	CTTACCTTGTCCCTGCTTAG+GGG	+	chr8_1:67271517-67271536	None:intergenic	50.0%
	TGGCCAGGTTTAATGGAGTC+CGG	-	chr8_1:67271806-67271825	Msa1208920:CDS	50.0%
	ACACCGGACTCCATTAAACC+TGG	+	chr8_1:67271812-67271831	None:intergenic	50.0%
	CTAAACAAGACCTTCCCAGC+TGG	-	chr8_1:67272117-67272136	Msa1208920:intron	50.0%
!!!	AGCGCGGTCTTTTTGGCTTA+GGG	+	chr8_1:67272190-67272209	None:intergenic	50.0%
!!!	AAGCGCGGTCTTTTTGGCTT+AGG	+	chr8_1:67272191-67272210	None:intergenic	50.0%
	TAAGCCAAAAAGACCGCGCT+TGG	-	chr8_1:67272190-67272209	Msa1208920:intron	50.0%
!	TTCTCCAAGCGCGGTCTTTT+TGG	+	chr8_1:67272197-67272216	None:intergenic	50.0%
	AGACCGAGGATGAACTCTCT+AGG	-	chr8_1:67272217-67272236	Msa1208920:intron	50.0%
	GACCGAGGATGAACTCTCTA+GGG	-	chr8_1:67272218-67272237	Msa1208920:intron	50.0%
	GTCCCTAGAGAGTTCATCCT+CGG	+	chr8_1:67272223-67272242	None:intergenic	50.0%
!!	GTTGGAAGCATTGTAGGGCA+TGG	+	chr8_1:67272271-67272290	None:intergenic	50.0%
	CGTACAAAGTACGTTGCCTG+AGG	+	chr8_1:67272336-67272355	None:intergenic	50.0%
	TCTTACCTGCGTTCGTGGTT+TGG	+	chr8_1:67272401-67272420	None:intergenic	50.0%
	AGATATCAAGAGTCGCGTGG+CGG	+	chr8_1:67272458-67272477	None:intergenic	50.0%
	AGCAGATATCAAGAGTCGCG+TGG	+	chr8_1:67272461-67272480	None:intergenic	50.0%
	GCTTTCTCAGTTGTGTCCCT+AGG	-	chr8_1:67272495-67272514	Msa1208920:intron	50.0%
	AGTCACAGCTTCCCCTAAGC+AGG	-	chr8_1:67271503-67271522	Msa1208920:three_prime_UTR	55.0%
	GTCACAGCTTCCCCTAAGCA+GGG	-	chr8_1:67271504-67271523	Msa1208920:three_prime_UTR	55.0%
	TGAGTCTGTTCCAGCTGGGA+AGG	+	chr8_1:67272130-67272149	None:intergenic	55.0%
	GCGCTGAATCAACCACTCGA+AGG	+	chr8_1:67272307-67272326	None:intergenic	55.0%
	TATGGCCAAACCACGAACGC+AGG	-	chr8_1:67272393-67272412	Msa1208920:intron	55.0%
	GGTACTCTTACCTGCGTTCG+TGG	+	chr8_1:67272406-67272425	None:intergenic	55.0%
	AGTCACAGCTTCCCCTAAGC+AGG	-	chr8_1:67271503-67271522	Msa1208920:three_prime_UTR	55.0%
	GTCACAGCTTCCCCTAAGCA+GGG	-	chr8_1:67271504-67271523	Msa1208920:three_prime_UTR	55.0%
	TGAGTCTGTTCCAGCTGGGA+AGG	+	chr8_1:67272130-67272149	None:intergenic	55.0%
	GCGCTGAATCAACCACTCGA+AGG	+	chr8_1:67272307-67272326	None:intergenic	55.0%
	TATGGCCAAACCACGAACGC+AGG	-	chr8_1:67272393-67272412	Msa1208920:intron	55.0%
	GGTACTCTTACCTGCGTTCG+TGG	+	chr8_1:67272406-67272425	None:intergenic	55.0%
	GCTTCCCCTAAGCAGGGACA+AGG	-	chr8_1:67271510-67271529	Msa1208920:three_prime_UTR	60.0%
	CCTCGGTCTTTCTCCAAGCG+CGG	+	chr8_1:67272206-67272225	None:intergenic	60.0%
	GCTTCCCCTAAGCAGGGACA+AGG	-	chr8_1:67271510-67271529	Msa1208920:three_prime_UTR	60.0%
	CCTCGGTCTTTCTCCAAGCG+CGG	+	chr8_1:67272206-67272225	None:intergenic	60.0%
	CCGCGCTTGGAGAAAGACCG+AGG	-	chr8_1:67272203-67272222	Msa1208920:intron	65.0%
	GATTCAGCGCGACGTGCCTC+AGG	-	chr8_1:67272317-67272336	Msa1208920:intron	65.0%
	CCGCGCTTGGAGAAAGACCG+AGG	-	chr8_1:67272203-67272222	Msa1208920:intron	65.0%
	GATTCAGCGCGACGTGCCTC+AGG	-	chr8_1:67272317-67272336	Msa1208920:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	67271314	67272884	67271314	ID=Msa1208920;Name=Msa1208920
chr8_1	mRNA	67271314	67272884	67271314	ID=Msa1208920-mRNA-1;Parent=Msa1208920;Name=Msa1208920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=88\|1\|1\|1\|1\|1\|2\|318\|206
chr8_1	exon	67271314	67272122	67271314	ID=Msa1208920-mRNA-1:exon:22160;Parent=Msa1208920-mRNA-1
chr8_1	exon	67272667	67272884	67272667	ID=Msa1208920-mRNA-1:exon:22159;Parent=Msa1208920-mRNA-1
chr8_1	five_prime_UTR	67272797	67272884	67272797	ID=Msa1208920-mRNA-1:five_prime_utr;Parent=Msa1208920-mRNA-1
chr8_1	CDS	67272667	67272796	67272667	ID=Msa1208920-mRNA-1:cds;Parent=Msa1208920-mRNA-1
chr8_1	CDS	67271632	67272122	67271632	ID=Msa1208920-mRNA-1:cds;Parent=Msa1208920-mRNA-1
chr8_1	three_prime_UTR	67271314	67271631	67271314	ID=Msa1208920-mRNA-1:three_prime_utr;Parent=Msa1208920-mRNA-1

Gene Sequence

>Msa1208920

ATGGCAGCACACAAGCTTGTGGTAGCATCACTTCTTCTATGCTGTTTAGCTGAACTTTGTTATGGAAAGGATCTCTTTTCTTCTTTGAAAAGAACCCTTGAAGTCACAGCTTCCCCTAAGCAGGGACAAGTTCTGTTATCTGGAGTAGACAAAATCAGTGGAACATGGGCTCTAAACAAGACCTTCCCAGCTGGAACAGACTCATCATACAAAACCATAAAGCTGAAGTTGTGCTACGCGGCCCTAAGCCAAAAAGACCGCGCTTGGAGAAAGACCGAGGATGAACTCTCTAGGGACAAGACTTGCCAACACAAAATGTTAGCCATGCCCTACAATGCTTCCAACAAAACGGTTCAAACCTTCGAGTGGTTGATTCAGCGCGACGTGCCTCAGGCAACGTACTTTGTACGCGCCTATGCATTTGATTCCAACGATAAGGAAGTGGCTTATGGCCAAACCACGAACGCAGGTAAGAGTACCAACTTGTTTGAGATCAACGCAATCAGTGGCCGCCACGCGACTCTTGATATCTGCTCCGTTGTCTTCAGTGCTTTCTCAGTTGTGTCCCTAGGTGTGTTCTTCTATATTGAAAAAAGGAAGGGAAAGTCACCAAAGCAGTAA

Protein sequence

>Msa1208920

MAAHKLVVASLLLCCLAELCYGKDLFSSLKRTLEVTASPKQGQVLLSGVDKISGTWALNKTFPAGTDSSYKTIKLKLCYAALSQKDRAWRKTEDELSRDKTCQHKMLAMPYNASNKTVQTFEWLIQRDVPQATYFVRAYAFDSNDKEVAYGQTTNAGKSTNLFEINAISGRHATLDICSVVFSAFSVVSLGVFFYIEKRKGKSPKQ*