AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369770 MtrunA17_Chr3g0114521 99.229 389 3 0 1 389 1 389 0.0 792
Msa0369770 MtrunA17_Chr2g0315761 55.556 342 151 1 48 389 55 395 3.03e-137 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369770 AT2G40490.1 77.926 376 80 2 15 389 21 394 0.0 609
Msa0369770 AT3G14930.2 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0369770 AT3G14930.1 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0369770 AT3G14930.3 54.180 323 147 1 67 389 1 322 1.17e-129 376

Find 117 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTCTTACACCACTTTC+TGG 0.157805 3_1:-67077993 Msa0369770:CDS
TTTCAGACAAACGCAGATTT+TGG 0.175740 3_1:+67079334 None:intergenic
ATTCCATTTGACATTGTAAA+AGG 0.206118 3_1:-67077963 Msa0369770:CDS
GTTACGGTACGGGCGAAGTA+TGG 0.216344 3_1:+67079405 None:intergenic
TTGCAGTTAATATAAGATTT+TGG 0.231158 3_1:-67074662 Msa0369770:three_prime_UTR
AATGGATTTGAATGGGTAAA+AGG 0.250908 3_1:+67079222 None:intergenic
TCAATTATTTGCTTCAAGTA+TGG 0.290572 3_1:+67075081 None:intergenic
ACTTGGCCTGCGGAGTGAAC+TGG 0.306505 3_1:+67077918 None:intergenic
AAATGTCGTTCTATATTTAG+AGG 0.312910 3_1:+67074543 None:intergenic
TCCATTCAATGTTCTCTTCC+AGG 0.315235 3_1:-67079205 Msa0369770:intron
CTTGGATTGGACGGTTGATA+TGG 0.339881 3_1:-67074956 Msa0369770:CDS
AACTTAGTATTTGATTCCTT+TGG 0.358951 3_1:+67074729 None:intergenic
GTTGATCCTGGTGTTCTGTT+TGG 0.376386 3_1:-67074886 Msa0369770:CDS
TTTCTCTAAAATAAAGAGAT+TGG 0.380766 3_1:-67075883 Msa0369770:CDS
ATCCTCTATGCAAGTGGATC+AGG 0.396912 3_1:-67075024 Msa0369770:CDS
CGATGCCGTGACCAAGGTTC+AGG 0.397386 3_1:+67074797 None:intergenic
TTGATATGGCTGACGGTAGA+AGG 0.402561 3_1:-67074942 Msa0369770:CDS
GAACATTGAATGGATTTGAA+TGG 0.412640 3_1:+67079214 None:intergenic
TAGAGGATAAGAGGGAGTTC+TGG 0.412953 3_1:+67075039 None:intergenic
GGCTGACGGTAGAAGGAGAT+TGG 0.418136 3_1:-67074935 Msa0369770:CDS
ATGGACTACTAGATCATGAT+TGG 0.420864 3_1:-67079450 None:intergenic
CCACTTGCATAGAGGATAAG+AGG 0.422510 3_1:+67075030 None:intergenic
CTGTACAGATATTCGATTCA+TGG 0.424244 3_1:-67075146 Msa0369770:CDS
AACATTGAATGGATTTGAAT+GGG 0.425887 3_1:+67079215 None:intergenic
ACATACGACGCCAGGGTAAA+CGG 0.433300 3_1:+67075930 None:intergenic
GATAATAAATCTGCAGTCCT+TGG 0.434879 3_1:-67075966 Msa0369770:CDS
GCGAAGTATGGGAAGGATAA+GGG 0.435189 3_1:+67079417 None:intergenic
TTACCTTGGATAGCTACATT+TGG 0.446082 3_1:+67074910 None:intergenic
GAGAGTTATATTACCCCATC+AGG 0.452559 3_1:+67078146 None:intergenic
GCTTGTCTCATAAGCCAAAC+AGG 0.452792 3_1:+67078920 None:intergenic
GGCGAAGTATGGGAAGGATA+AGG 0.453863 3_1:+67079416 None:intergenic
ATGTCGAAAGACCTCCTGTT+TGG 0.460725 3_1:-67078934 Msa0369770:CDS
CTTGGCCTGCGGAGTGAACT+GGG 0.461901 3_1:+67077919 None:intergenic
CTTGCGCTCCATTGTCAGCT+TGG 0.463609 3_1:+67075169 None:intergenic
CAGATCTTTCCCGGAATGAC+GGG 0.470670 3_1:+67078222 None:intergenic
AACGTATGGAACTGATTCCT+CGG 0.471977 3_1:+67077872 None:intergenic
CTGGCGTCGTATGTGGTTGA+AGG 0.472993 3_1:-67075921 Msa0369770:CDS
GTTTACCCTGGCGTCGTATG+TGG 0.473968 3_1:-67075928 Msa0369770:CDS
GTTGAGTTTCAGCTATGTTA+CGG 0.483371 3_1:+67079389 None:intergenic
CGAACTGCATTGAGCAAAAG+AGG 0.487266 3_1:+67078965 None:intergenic
CACGATACCGTGAGAAAGGC+TGG 0.489317 3_1:-67074835 Msa0369770:CDS
AAATGTGCTACATTCTCCTC+AGG 0.494178 3_1:+67074763 None:intergenic
CTTGGTCACGGCATCGTAGT+AGG 0.496571 3_1:-67074790 Msa0369770:CDS
TTACGGTACGGGCGAAGTAT+GGG 0.496606 3_1:+67079406 None:intergenic
GGAATATTCATTCCAGAAAG+TGG 0.500259 3_1:+67077981 None:intergenic
GTTTGGCTTATGAGACAAGC+TGG 0.502036 3_1:-67078917 Msa0369770:CDS
ACCTGGAAGAGAACATTGAA+TGG 0.506655 3_1:+67079204 None:intergenic
CTTCAACCACATACGACGCC+AGG 0.512222 3_1:+67075922 None:intergenic
CGGTGTGGATGTTGTAAGCT+TGG 0.514049 3_1:-67074974 Msa0369770:CDS
AATTTCATTGCAACCGTGGA+AGG 0.514515 3_1:-67078177 Msa0369770:CDS
CTGAATCGTTCAAAATCCAC+TGG 0.515548 3_1:+67075108 None:intergenic
TGTGGGTGCTCCGTTTACCC+TGG 0.516470 3_1:-67075940 Msa0369770:CDS
CCCTCTACCAGCCTTTCTCA+CGG 0.518645 3_1:+67074828 None:intergenic
GCAAAAGTTTACAACATCAA+TGG 0.520601 3_1:-67075208 Msa0369770:CDS
ATTTGACATTGTAAAAGGCA+AGG 0.524512 3_1:-67077958 Msa0369770:CDS
GCTGACGGTAGAAGGAGATT+GGG 0.526942 3_1:-67074934 Msa0369770:CDS
GATACACGATACCGTGAGAA+AGG 0.528071 3_1:-67074839 Msa0369770:CDS
ACCGTGAGAAAGGCTGGTAG+AGG 0.529078 3_1:-67074829 Msa0369770:CDS
TGGATGTTGTAAGCTTGGAT+TGG 0.533084 3_1:-67074969 Msa0369770:CDS
ATCCAAGGTAATGTTGATCC+TGG 0.536465 3_1:-67074898 Msa0369770:CDS
GTTTCAGCTATGTTACGGTA+CGG 0.536484 3_1:+67079394 None:intergenic
ATGGATTTGAATGGGTAAAA+GGG 0.537828 3_1:+67079223 None:intergenic
TCAGATCTTTCCCGGAATGA+CGG 0.538694 3_1:+67078221 None:intergenic
GTTATATTACCCCATCAGGC+TGG 0.542394 3_1:+67078150 None:intergenic
ATCTGAAAACGTTGATCTTG+TGG 0.544982 3_1:-67078204 Msa0369770:CDS
CACCAGGATCAACATTACCT+TGG 0.550632 3_1:+67074896 None:intergenic
TGGACTACTAGATCATGATT+GGG 0.552999 3_1:-67079449 None:intergenic
TTTCAGCTATGTTACGGTAC+GGG 0.555929 3_1:+67079395 None:intergenic
TGTACAGATATTCGATTCAT+GGG 0.557652 3_1:-67075145 Msa0369770:CDS
TTTGACCCAGTTCACTCCGC+AGG 0.557974 3_1:-67077924 Msa0369770:CDS
CACGGTATCGTGTATCCTAT+CGG 0.559155 3_1:+67074846 None:intergenic
CCTCTTATCCTCTATGCAAG+TGG 0.559600 3_1:-67075030 Msa0369770:CDS
CTTGAGAGAATAGCATTGAC+CGG 0.561094 3_1:-67074994 Msa0369770:CDS
GATAGTGCTTCACCAACGTA+TGG 0.570324 3_1:+67077858 None:intergenic
CTCCTGATCCACTTGCATAG+AGG 0.573987 3_1:+67075022 None:intergenic
GCTAACTACACCGCAAAACA+TGG 0.575089 3_1:+67079291 None:intergenic
TTTGACATTGTAAAAGGCAA+GGG 0.580301 3_1:-67077957 Msa0369770:CDS
GTGAACTGGGTCAAATATGA+CGG 0.581289 3_1:+67077932 None:intergenic
CACTTGATCAACTTGGCCTG+CGG 0.582378 3_1:+67077908 None:intergenic
TTTGAATGGGTAAAAGGGTG+TGG 0.582685 3_1:+67079228 None:intergenic
ACGTATGGAACTGATTCCTC+GGG 0.583383 3_1:+67077873 None:intergenic
CTCTATGCAAGTGGATCAGG+AGG 0.584281 3_1:-67075021 Msa0369770:CDS
GGACCAAATGTAGCTATCCA+AGG 0.588652 3_1:-67074913 Msa0369770:CDS
TGTTGTAAGCTTGGATTGGA+CGG 0.589620 3_1:-67074965 Msa0369770:CDS
ACTCCCTCACTTGATCAACT+TGG 0.589624 3_1:+67077901 None:intergenic
ATTGGCATTCTCTGAACCAA+AGG 0.592895 3_1:-67075865 Msa0369770:intron
TGAACTGGGTCAAATATGAC+GGG 0.600113 3_1:+67077933 None:intergenic
CACTTGCATAGAGGATAAGA+GGG 0.600254 3_1:+67075031 None:intergenic
GGGAAACATATCCTGAACCT+TGG 0.602324 3_1:-67074808 Msa0369770:CDS
CGAAAGAGCTGATTACCGAT+AGG 0.604713 3_1:-67074861 Msa0369770:CDS
TTTGGCTTATGAGACAAGCT+GGG 0.604715 3_1:-67078916 Msa0369770:CDS
TTCGATCCAAACAGAACACC+AGG 0.613403 3_1:+67074880 None:intergenic
ACAAGCTGGGAGGTACATGA+AGG 0.615658 3_1:-67078903 Msa0369770:intron
GGCAACAGAGCTTAGTCCAG+TGG 0.616272 3_1:-67075124 Msa0369770:CDS
CAGGCCAAGTTGATCAAGTG+AGG 0.617997 3_1:-67077905 Msa0369770:CDS
CTACTACGATGCCGTGACCA+AGG 0.620641 3_1:+67074791 None:intergenic
GGATAAGAGGGAGTTCTGGA+TGG 0.622692 3_1:+67075043 None:intergenic
TCAGGCTGGAAAACCTTCCA+CGG 0.624106 3_1:+67078164 None:intergenic
ATACAATACCAAGCTGACAA+TGG 0.630738 3_1:-67075177 Msa0369770:CDS
TTGAAATTTCATTGCAACCG+TGG 0.633557 3_1:-67078181 Msa0369770:CDS
TTCAACCACATACGACGCCA+GGG 0.634894 3_1:+67075923 None:intergenic
GCGTCGTATGTGGTTGAAGG+CGG 0.638298 3_1:-67075918 Msa0369770:CDS
ATTGAGCAAAAGAGGTTCTG+TGG 0.641274 3_1:+67078973 None:intergenic
CCGTGAGAAAGGCTGGTAGA+GGG 0.642675 3_1:-67074828 Msa0369770:CDS
ATGGGTAAAAGGGTGTGGTG+TGG 0.645380 3_1:+67079233 None:intergenic
AGGCCAAGTTGATCAAGTGA+GGG 0.645695 3_1:-67077904 Msa0369770:CDS
AGTGAGGGAGTTTATTCCCG+AGG 0.654388 3_1:-67077889 Msa0369770:CDS
CATATCCTGAACCTTGGTCA+CGG 0.656692 3_1:-67074802 Msa0369770:CDS
TGGACGGTTGATATGGCTGA+CGG 0.660456 3_1:-67074949 Msa0369770:CDS
GGCTTATGAGACAAGCTGGG+AGG 0.683527 3_1:-67078913 Msa0369770:CDS
GAGAATAGCATTGACCGGTG+TGG 0.684858 3_1:-67074989 Msa0369770:CDS
ACGGAGCACCCACAAAACCA+AGG 0.689374 3_1:+67075949 None:intergenic
GGTACGGGCGAAGTATGGGA+AGG 0.692117 3_1:+67079410 None:intergenic
GAGGAATCAGTTCCATACGT+TGG 0.710365 3_1:-67077870 Msa0369770:CDS
CATCGTAGTAGGTACTCCTG+AGG 0.717142 3_1:-67074779 Msa0369770:CDS
CAAGCTTACAACATCCACAC+CGG 0.721621 3_1:+67074975 None:intergenic
TGTCTCATAAGCCAAACAGG+AGG 0.741224 3_1:+67078923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTAAAATTTAATC+TGG - chr3_1:67074862-67074881 Msa0369770:CDS 10.0%
!!! TTTTGTTCTATTTATTTTTT+TGG - chr3_1:67077484-67077503 Msa0369770:intron 10.0%
!! AATAAAATTGATTATTTCAA+GGG + chr3_1:67078317-67078336 None:intergenic 10.0%
!! AAATAAAATTGATTATTTCA+AGG + chr3_1:67078318-67078337 None:intergenic 10.0%
!!! TTTTATTTGTTCTTATCTTT+TGG - chr3_1:67077257-67077276 Msa0369770:intron 15.0%
!! GAATTATAAAACAAACAAAA+AGG + chr3_1:67077544-67077563 None:intergenic 15.0%
!!! CTTTATTAAATTGAAAGTAT+TGG - chr3_1:67077974-67077993 Msa0369770:CDS 15.0%
!! ATAAAATTGATTATTTCAAG+GGG + chr3_1:67078316-67078335 None:intergenic 15.0%
!! TAAATGTTAATGATAGAAGA+TGG + chr3_1:67074818-67074837 None:intergenic 20.0%
!! AATAAGGTTTACACAATAAT+GGG + chr3_1:67074888-67074907 None:intergenic 20.0%
!! AAATAAGGTTTACACAATAA+TGG + chr3_1:67074889-67074908 None:intergenic 20.0%
!!! TGTAAACCTTATTTAATGAT+GGG - chr3_1:67074895-67074914 Msa0369770:CDS 20.0%
!!! CAAAAGTATAACAAACAATT+AGG + chr3_1:67075107-67075126 None:intergenic 20.0%
!! TATTAAAAAGAAATTGCGAT+TGG - chr3_1:67075412-67075431 Msa0369770:intron 20.0%
!!! ATTTAGAACAAGATAAGTAT+AGG + chr3_1:67075621-67075640 None:intergenic 20.0%
!! CTATAAAATAAAAAGAAGTG+CGG + chr3_1:67076203-67076222 None:intergenic 20.0%
!! AGATTTATGAATCATCAATT+TGG - chr3_1:67076439-67076458 Msa0369770:intron 20.0%
!! GATTTGTAAATTCTAATCAA+CGG + chr3_1:67076583-67076602 None:intergenic 20.0%
!!! TCTGTACTTTTTATTTAAAG+TGG + chr3_1:67076833-67076852 None:intergenic 20.0%
!! TGTCAAATAATAAAAAAAGC+AGG - chr3_1:67077415-67077434 Msa0369770:intron 20.0%
!!! CTTAGATAAAGTTTTAGTAA+GGG + chr3_1:67077636-67077655 None:intergenic 20.0%
!!! TCTTAGATAAAGTTTTAGTA+AGG + chr3_1:67077637-67077656 None:intergenic 20.0%
!!! TTTCTCTAAAATAAAGAGAT+TGG - chr3_1:67078089-67078108 Msa0369770:intron 20.0%
!! TAATAAAGAAGCAAACAAAT+TGG + chr3_1:67078596-67078615 None:intergenic 20.0%
!!! TTGCAGTTAATATAAGATTT+TGG - chr3_1:67079310-67079329 Msa0369770:exon 20.0%
!!! TTGTCAATATTTTATTTCTG+CGG - chr3_1:67079334-67079353 Msa0369770:five_prime_UTR 20.0%
!! AACATTGAATGGATTTGAAT+GGG + chr3_1:67074760-67074779 None:intergenic 25.0%
! TAATAAATGGAAGTAATACC+TGG + chr3_1:67074788-67074807 None:intergenic 25.0%
! AGGTATTACTTCCATTTATT+AGG - chr3_1:67074787-67074806 Msa0369770:CDS 25.0%
! GGTATTACTTCCATTTATTA+GGG - chr3_1:67074788-67074807 Msa0369770:CDS 25.0%
!! GTGTAAACCTTATTTAATGA+TGG - chr3_1:67074894-67074913 Msa0369770:CDS 25.0%
!! TTGTTATGCATCTGAATTTT+GGG - chr3_1:67074933-67074952 Msa0369770:CDS 25.0%
! TGTGTATTCGTATTAGAATT+TGG - chr3_1:67075137-67075156 Msa0369770:CDS 25.0%
! GTGTATTCGTATTAGAATTT+GGG - chr3_1:67075138-67075157 Msa0369770:CDS 25.0%
!! TCTATTCAAGTACTACATTT+TGG + chr3_1:67075357-67075376 None:intergenic 25.0%
!!! CTGTTGAAAATGTTCTAAAA+TGG + chr3_1:67075533-67075552 None:intergenic 25.0%
! ATTCAGCTCAATTATTTGTT+TGG - chr3_1:67075566-67075585 Msa0369770:intron 25.0%
! ATTCCATTTGACATTGTAAA+AGG - chr3_1:67076009-67076028 Msa0369770:intron 25.0%
! CTAAAAAACATACAGTCTTA+TGG + chr3_1:67076262-67076281 None:intergenic 25.0%
! ACTGAATGATTGTTTAATAG+AGG - chr3_1:67076671-67076690 Msa0369770:intron 25.0%
! AAAAATATAACCAGTTCAGT+TGG + chr3_1:67076787-67076806 None:intergenic 25.0%
! AAAGTACAATAAGAGAATGT+AGG - chr3_1:67076882-67076901 Msa0369770:intron 25.0%
! AAGTACAATAAGAGAATGTA+GGG - chr3_1:67076883-67076902 Msa0369770:intron 25.0%
! AAAACAGACATATTTGATGT+CGG - chr3_1:67077663-67077682 Msa0369770:intron 25.0%
! AAAGAAAAAAGCAAAGCATA+GGG + chr3_1:67077958-67077977 None:intergenic 25.0%
! TAAAGAAAAAAGCAAAGCAT+AGG + chr3_1:67077959-67077978 None:intergenic 25.0%
!!! ATTATTTTGAGAAGCTAGTT+TGG - chr3_1:67078417-67078436 Msa0369770:intron 25.0%
!!! TTATTTTGAGAAGCTAGTTT+GGG - chr3_1:67078418-67078437 Msa0369770:intron 25.0%
!! TATAATTTTGCGTATCACAA+TGG - chr3_1:67078484-67078503 Msa0369770:intron 25.0%
! TCAATTATTTGCTTCAAGTA+TGG + chr3_1:67078894-67078913 None:intergenic 25.0%
! AACTTAGTATTTGATTCCTT+TGG + chr3_1:67079246-67079265 None:intergenic 25.0%
! AAATGTCGTTCTATATTTAG+AGG + chr3_1:67079432-67079451 None:intergenic 25.0%
! TTGAATTCAACCATGTTTTG+CGG - chr3_1:67074671-67074690 Msa0369770:three_prime_UTR 30.0%
ATGGATTTGAATGGGTAAAA+GGG + chr3_1:67074752-67074771 None:intergenic 30.0%
! AATGGATTTGAATGGGTAAA+AGG + chr3_1:67074753-67074772 None:intergenic 30.0%
! GAACATTGAATGGATTTGAA+TGG + chr3_1:67074761-67074780 None:intergenic 30.0%
AGATGGAAAACCCTAATAAA+TGG + chr3_1:67074801-67074820 None:intergenic 30.0%
CACAAACCCATCATTAAATA+AGG + chr3_1:67074904-67074923 None:intergenic 30.0%
! GTTGTTATGCATCTGAATTT+TGG - chr3_1:67074932-67074951 Msa0369770:CDS 30.0%
!! AATTTTGGGAATTTATGTGC+AGG - chr3_1:67074947-67074966 Msa0369770:CDS 30.0%
ATTCGTATTAGAATTTGGGT+TGG - chr3_1:67075142-67075161 Msa0369770:CDS 30.0%
! TTCGTATTAGAATTTGGGTT+GGG - chr3_1:67075143-67075162 Msa0369770:CDS 30.0%
CCTGACAATGTGTTTATAAT+TGG + chr3_1:67075207-67075226 None:intergenic 30.0%
CCAATTATAAACACATTGTC+AGG - chr3_1:67075204-67075223 Msa0369770:CDS 30.0%
GAACATCCAAATTTAGTGAT+TGG - chr3_1:67075266-67075285 Msa0369770:intron 30.0%
CAAACACCAATCACTAAATT+TGG + chr3_1:67075275-67075294 None:intergenic 30.0%
ACTCTGTTTAACATATGCAA+TGG - chr3_1:67075376-67075395 Msa0369770:intron 30.0%
CTCTGTTTAACATATGCAAT+GGG - chr3_1:67075377-67075396 Msa0369770:intron 30.0%
ACTTTGTGTGAAACTAAGAT+TGG - chr3_1:67075472-67075491 Msa0369770:intron 30.0%
AAAACCAATTTGACGTTTAG+TGG + chr3_1:67075645-67075664 None:intergenic 30.0%
!! CTTCTTGAATAAGCTTTGAA+AGG - chr3_1:67075668-67075687 Msa0369770:intron 30.0%
!! TGTTATGGTTCTGATTATGT+TGG - chr3_1:67075906-67075925 Msa0369770:CDS 30.0%
! TTGCCTTTTACAATGTCAAA+TGG + chr3_1:67076015-67076034 None:intergenic 30.0%
ATTTGACATTGTAAAAGGCA+AGG - chr3_1:67076014-67076033 Msa0369770:intron 30.0%
TTTGACATTGTAAAAGGCAA+GGG - chr3_1:67076015-67076034 Msa0369770:intron 30.0%
ATGATAAAACAGGGATACAA+AGG + chr3_1:67076175-67076194 None:intergenic 30.0%
! CTATATGGTTTAGTTCAGTT+CGG + chr3_1:67076553-67076572 None:intergenic 30.0%
GTAAATTCTAATCAACGGTT+CGG + chr3_1:67076578-67076597 None:intergenic 30.0%
! ATGTTTTGTAGACAGTTAAC+CGG - chr3_1:67076609-67076628 Msa0369770:intron 30.0%
ATTAAAATGTCCAACTGAAC+TGG - chr3_1:67076774-67076793 Msa0369770:intron 30.0%
TAGTATTTATAGCCTGCTAT+GGG - chr3_1:67076967-67076986 Msa0369770:intron 30.0%
! CTAAGCCTTTAGGAATATTA+TGG - chr3_1:67077170-67077189 Msa0369770:intron 30.0%
AAACCATTTCAAGAAAGAGA+AGG - chr3_1:67077384-67077403 Msa0369770:intron 30.0%
TTTCCTTCTCTTTCTTGAAA+TGG + chr3_1:67077390-67077409 None:intergenic 30.0%
TGGCAGAAACACAAATTTAA+TGG + chr3_1:67077566-67077585 None:intergenic 30.0%
AACATATCCACTAAGTTACT+TGG + chr3_1:67077586-67077605 None:intergenic 30.0%
!! GATAAAGTTTTAGTAAGGGA+AGG + chr3_1:67077632-67077651 None:intergenic 30.0%
!! TTCAGTTTTGTGAATCATGT+CGG - chr3_1:67077793-67077812 Msa0369770:intron 30.0%
GATTAGATAATTAGAGTCTC+TGG + chr3_1:67077874-67077893 None:intergenic 30.0%
AAGAAAAAAGCAAAGCATAG+GGG + chr3_1:67077957-67077976 None:intergenic 30.0%
! TCATTGGTTATTGTGTAGAA+AGG + chr3_1:67078249-67078268 None:intergenic 30.0%
TAACCAATGAGTTCTTAAAC+TGG - chr3_1:67078259-67078278 Msa0369770:intron 30.0%
ACATTTGGAAAAGCTTACAA+TGG - chr3_1:67078514-67078533 Msa0369770:intron 30.0%
! ATGGACAGCTTTTTAATCAT+AGG + chr3_1:67078559-67078578 None:intergenic 30.0%
ATTGGTAAGCATGAATCATA+TGG + chr3_1:67078578-67078597 None:intergenic 30.0%
GCAAAAGTTTACAACATCAA+TGG - chr3_1:67078764-67078783 Msa0369770:intron 30.0%
TGTACAGATATTCGATTCAT+GGG - chr3_1:67078827-67078846 Msa0369770:intron 30.0%
!!! GAATGTAGCACATTTTTTTG+AGG - chr3_1:67079217-67079236 Msa0369770:CDS 30.0%
GTTGAGTTTCAGCTATGTTA+CGG + chr3_1:67074586-67074605 None:intergenic 35.0%
! TTCAGACAAACGCAGATTTT+GGG + chr3_1:67074640-67074659 None:intergenic 35.0%
! TTTCAGACAAACGCAGATTT+TGG + chr3_1:67074641-67074660 None:intergenic 35.0%
!!! GTGTTGTTTTCTGGGTAAAA+TGG + chr3_1:67074720-67074739 None:intergenic 35.0%
!!! ATGATGGGTTTGTGTTGTTT+TGG - chr3_1:67074910-67074929 Msa0369770:CDS 35.0%
!! TCTGTGGCATTAGTTGTTTT+AGG + chr3_1:67074986-67075005 None:intergenic 35.0%
TTGTCAGGTCATATGTCATT+TGG - chr3_1:67075219-67075238 Msa0369770:CDS 35.0%
! TGTCAGGTCATATGTCATTT+GGG - chr3_1:67075220-67075239 Msa0369770:CDS 35.0%
GGATTGTCACATTCTTTGTA+TGG - chr3_1:67075587-67075606 Msa0369770:intron 35.0%
GTCACATTCTTTGTATGGTT+TGG - chr3_1:67075592-67075611 Msa0369770:intron 35.0%
AATGCCACTAAACGTCAAAT+TGG - chr3_1:67075638-67075657 Msa0369770:intron 35.0%
! GGTATTTTTCGCAGATGATT+TGG + chr3_1:67075732-67075751 None:intergenic 35.0%
ATCTGAAAACGTTGATCTTG+TGG - chr3_1:67075768-67075787 Msa0369770:intron 35.0%
TTGAAATTTCATTGCAACCG+TGG - chr3_1:67075791-67075810 Msa0369770:intron 35.0%
TTACCCTACTTCTTGTGTTA+TGG - chr3_1:67075891-67075910 Msa0369770:CDS 35.0%
GAACCATAACACAAGAAGTA+GGG + chr3_1:67075897-67075916 None:intergenic 35.0%
AGAACCATAACACAAGAAGT+AGG + chr3_1:67075898-67075917 None:intergenic 35.0%
GATATTCTTACACCACTTTC+TGG - chr3_1:67075979-67075998 Msa0369770:intron 35.0%
GGAATATTCATTCCAGAAAG+TGG + chr3_1:67075994-67076013 None:intergenic 35.0%
! ACTATCAATTTTGCGCAAAG+AGG - chr3_1:67076131-67076150 Msa0369770:intron 35.0%
TGGAATTTGACTAAACAGAC+AGG + chr3_1:67076242-67076261 None:intergenic 35.0%
TGATTGCGAATCATAGATAG+AGG - chr3_1:67076324-67076343 Msa0369770:intron 35.0%
GATTGCGAATCATAGATAGA+GGG - chr3_1:67076325-67076344 Msa0369770:intron 35.0%
ATTGCGAATCATAGATAGAG+GGG - chr3_1:67076326-67076345 Msa0369770:intron 35.0%
! CATATTATCTTGATAGCCAC+TGG + chr3_1:67076408-67076427 None:intergenic 35.0%
CGTCTTAAATAGTAGTTACC+TGG - chr3_1:67076497-67076516 Msa0369770:intron 35.0%
! TGTTTTGTAGACAGTTAACC+GGG - chr3_1:67076610-67076629 Msa0369770:intron 35.0%
AACTCTTCAAAATTTCAGCC+CGG + chr3_1:67076631-67076650 None:intergenic 35.0%
! AGAGAGCTTCGTTTCATTTT+AGG - chr3_1:67076729-67076748 Msa0369770:intron 35.0%
!!! TTCGTTTCATTTTAGGACAG+TGG - chr3_1:67076736-67076755 Msa0369770:intron 35.0%
!!! TCGTTTCATTTTAGGACAGT+GGG - chr3_1:67076737-67076756 Msa0369770:intron 35.0%
! AGGGTTAAGTATCGTATTCT+AGG - chr3_1:67076902-67076921 Msa0369770:intron 35.0%
! GGGTTAAGTATCGTATTCTA+GGG - chr3_1:67076903-67076922 Msa0369770:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr3_1:67076920-67076939 Msa0369770:intron 35.0%
GTAGTATTTATAGCCTGCTA+TGG - chr3_1:67076966-67076985 Msa0369770:intron 35.0%
! AGGTTTCTAGAAGCTTAGAT+GGG - chr3_1:67077054-67077073 Msa0369770:intron 35.0%
! AGCCTTTAGGAATATTATGG+CGG - chr3_1:67077173-67077192 Msa0369770:intron 35.0%
AACCGCCATAATATTCCTAA+AGG + chr3_1:67077178-67077197 None:intergenic 35.0%
GTATGTGCAATAAAGAGAGA+AGG + chr3_1:67077522-67077541 None:intergenic 35.0%
TGTGGAAATTCAACACAGTT+TGG - chr3_1:67077696-67077715 Msa0369770:intron 35.0%
GTGGAAATTCAACACAGTTT+GGG - chr3_1:67077697-67077716 Msa0369770:intron 35.0%
TCAAAACTGAACTACTCTAC+TGG + chr3_1:67077752-67077771 None:intergenic 35.0%
TTCACAAAACTGAATCGAAC+TGG + chr3_1:67077787-67077806 None:intergenic 35.0%
AGATAATTAGAGTCTCTGGT+GGG + chr3_1:67077870-67077889 None:intergenic 35.0%
TAGATAATTAGAGTCTCTGG+TGG + chr3_1:67077871-67077890 None:intergenic 35.0%
!! AAATTGAAAGTATTGGTCGC+AGG - chr3_1:67077981-67078000 Msa0369770:CDS 35.0%
GATAATAAATCTGCAGTCCT+TGG - chr3_1:67078006-67078025 Msa0369770:CDS 35.0%
AGGTGGTTAAAGATTACCTT+TGG + chr3_1:67078126-67078145 None:intergenic 35.0%
TTATTCAGCAGTTCAAAACC+TGG - chr3_1:67078214-67078233 Msa0369770:CDS 35.0%
TGACCAGTTTAAGAACTCAT+TGG + chr3_1:67078265-67078284 None:intergenic 35.0%
CTTAAACTGGTCATTTAGAG+CGG - chr3_1:67078272-67078291 Msa0369770:intron 35.0%
AAGCTTACAATGGAAAAGCT+TGG - chr3_1:67078524-67078543 Msa0369770:intron 35.0%
TATGCTTTCAACTTTCAGAG+TGG - chr3_1:67078652-67078671 Msa0369770:intron 35.0%
ATACAATACCAAGCTGACAA+TGG - chr3_1:67078795-67078814 Msa0369770:intron 35.0%
CTGTACAGATATTCGATTCA+TGG - chr3_1:67078826-67078845 Msa0369770:intron 35.0%
TTACCTTGGATAGCTACATT+TGG + chr3_1:67079065-67079084 None:intergenic 35.0%
!!! CATTTTTTTGAGGTTGCCAA+AGG - chr3_1:67079227-67079246 Msa0369770:CDS 35.0%
TTTCAGCTATGTTACGGTAC+GGG + chr3_1:67074580-67074599 None:intergenic 40.0%
GTTTCAGCTATGTTACGGTA+CGG + chr3_1:67074581-67074600 None:intergenic 40.0%
TTTGAATGGGTAAAAGGGTG+TGG + chr3_1:67074747-67074766 None:intergenic 40.0%
TCCATTCAATGTTCTCTTCC+AGG - chr3_1:67074767-67074786 Msa0369770:CDS 40.0%
ACCTGGAAGAGAACATTGAA+TGG + chr3_1:67074771-67074790 None:intergenic 40.0%
ATTGAGCAAAAGAGGTTCTG+TGG + chr3_1:67075002-67075021 None:intergenic 40.0%
! CTCTTTTGCTCAATGCAGTT+CGG - chr3_1:67075008-67075027 Msa0369770:CDS 40.0%
! TCTTTTGCTCAATGCAGTTC+GGG - chr3_1:67075009-67075028 Msa0369770:CDS 40.0%
! TTTGGCTTATGAGACAAGCT+GGG - chr3_1:67075056-67075075 Msa0369770:CDS 40.0%
TGTGTGAAACTAAGATTGGC+TGG - chr3_1:67075476-67075495 Msa0369770:intron 40.0%
! CAACGTTTTCAGATCTTTCC+CGG + chr3_1:67075762-67075781 None:intergenic 40.0%
AATTTCATTGCAACCGTGGA+AGG - chr3_1:67075795-67075814 Msa0369770:intron 40.0%
GAGAGTTATATTACCCCATC+AGG + chr3_1:67075829-67075848 None:intergenic 40.0%
!! CTCGATACTGATTCTGTAAC+AGG - chr3_1:67075942-67075961 Msa0369770:CDS 40.0%
TGAACTGGGTCAAATATGAC+GGG + chr3_1:67076042-67076061 None:intergenic 40.0%
GTGAACTGGGTCAAATATGA+CGG + chr3_1:67076043-67076062 None:intergenic 40.0%
! AACGTATGGAACTGATTCCT+CGG + chr3_1:67076103-67076122 None:intergenic 40.0%
! ATTTTGCGCAAAGAGGTTTG+AGG - chr3_1:67076138-67076157 Msa0369770:intron 40.0%
GGGTGTAATGACATTAAGTG+AGG - chr3_1:67076346-67076365 Msa0369770:intron 40.0%
ATAGTAGTTACCTGGAGACT+AGG - chr3_1:67076505-67076524 Msa0369770:intron 40.0%
!! ATCAACGGTTCGGTTCTATA+TGG + chr3_1:67076568-67076587 None:intergenic 40.0%
GTTTAATAGAGGAAAGCTGC+TGG - chr3_1:67076682-67076701 Msa0369770:intron 40.0%
!!! TTTCATTTTAGGACAGTGGG+AGG - chr3_1:67076740-67076759 Msa0369770:intron 40.0%
!! TACTCTTGAGAGCATTCTCA+AGG + chr3_1:67076949-67076968 None:intergenic 40.0%
!!! CAGGGGTATTGGTGTATTTT+AGG - chr3_1:67077021-67077040 Msa0369770:intron 40.0%
!!! GGGTATTGGTGTATTTTAGG+CGG - chr3_1:67077024-67077043 Msa0369770:intron 40.0%
!! GTATTTTAGGCGGTTTCTAG+AGG - chr3_1:67077034-67077053 Msa0369770:intron 40.0%
! GAGGTTTCTAGAAGCTTAGA+TGG - chr3_1:67077053-67077072 Msa0369770:intron 40.0%
AAAAAGCAGGAAACGTGAAG+TGG - chr3_1:67077428-67077447 Msa0369770:intron 40.0%
GTTTCTGCCAAGTAACTTAG+TGG - chr3_1:67077576-67077595 Msa0369770:intron 40.0%
! AGGCATTGTTTGAGTCACTA+AGG + chr3_1:67077612-67077631 None:intergenic 40.0%
! ACTGAACTACTCTACTGGTT+TGG + chr3_1:67077747-67077766 None:intergenic 40.0%
ATTGGCATTCTCTGAACCAA+AGG - chr3_1:67078107-67078126 Msa0369770:intron 40.0%
AAGCACATCCTAAGTTCACA+TGG + chr3_1:67078185-67078204 None:intergenic 40.0%
GTAGAAAGGTAAAACATGCC+AGG + chr3_1:67078235-67078254 None:intergenic 40.0%
CACAATGGAGCTGTTACATT+TGG - chr3_1:67078499-67078518 Msa0369770:intron 40.0%
! ACTTTTGCAGTAACGAGTGA+AGG + chr3_1:67078752-67078771 None:intergenic 40.0%
CTGAATCGTTCAAAATCCAC+TGG + chr3_1:67078867-67078886 None:intergenic 40.0%
CACTTGCATAGAGGATAAGA+GGG + chr3_1:67078944-67078963 None:intergenic 40.0%
!! CTTGAGAGAATAGCATTGAC+CGG - chr3_1:67078978-67078997 Msa0369770:CDS 40.0%
TGGATGTTGTAAGCTTGGAT+TGG - chr3_1:67079003-67079022 Msa0369770:CDS 40.0%
! TGTTGTAAGCTTGGATTGGA+CGG - chr3_1:67079007-67079026 Msa0369770:intron 40.0%
ATCCAAGGTAATGTTGATCC+TGG - chr3_1:67079074-67079093 Msa0369770:intron 40.0%
AAATGTGCTACATTCTCCTC+AGG + chr3_1:67079212-67079231 None:intergenic 40.0%
GCGAAGTATGGGAAGGATAA+GGG + chr3_1:67074558-67074577 None:intergenic 45.0%
! CAAACGCAGATTTTGGGCTT+TGG + chr3_1:67074634-67074653 None:intergenic 45.0%
GCTAACTACACCGCAAAACA+TGG + chr3_1:67074684-67074703 None:intergenic 45.0%
!!! GTGGTGTGGTGTTGTTTTCT+GGG + chr3_1:67074728-67074747 None:intergenic 45.0%
!!! TGTGGTGTGGTGTTGTTTTC+TGG + chr3_1:67074729-67074748 None:intergenic 45.0%
CGAACTGCATTGAGCAAAAG+AGG + chr3_1:67075010-67075029 None:intergenic 45.0%
! CTTTTGCTCAATGCAGTTCG+GGG - chr3_1:67075010-67075029 Msa0369770:CDS 45.0%
ATGTCGAAAGACCTCCTGTT+TGG - chr3_1:67075038-67075057 Msa0369770:CDS 45.0%
TGTCTCATAAGCCAAACAGG+AGG + chr3_1:67075052-67075071 None:intergenic 45.0%
GCTTGTCTCATAAGCCAAAC+AGG + chr3_1:67075055-67075074 None:intergenic 45.0%
! GTTTGGCTTATGAGACAAGC+TGG - chr3_1:67075055-67075074 Msa0369770:CDS 45.0%
!! CGCAGATGATTTGGTAACTC+TGG + chr3_1:67075723-67075742 None:intergenic 45.0%
GCGAAAAATACCCGTCATTC+CGG - chr3_1:67075740-67075759 Msa0369770:intron 45.0%
CGAAAAATACCCGTCATTCC+GGG - chr3_1:67075741-67075760 Msa0369770:intron 45.0%
TCAGATCTTTCCCGGAATGA+CGG + chr3_1:67075754-67075773 None:intergenic 45.0%
GTTATATTACCCCATCAGGC+TGG + chr3_1:67075825-67075844 None:intergenic 45.0%
!! AGGCCAAGTTGATCAAGTGA+GGG - chr3_1:67076068-67076087 Msa0369770:intron 45.0%
ACTCCCTCACTTGATCAACT+TGG + chr3_1:67076074-67076093 None:intergenic 45.0%
! ACGTATGGAACTGATTCCTC+GGG + chr3_1:67076102-67076121 None:intergenic 45.0%
GAGGAATCAGTTCCATACGT+TGG - chr3_1:67076102-67076121 Msa0369770:intron 45.0%
GATAGTGCTTCACCAACGTA+TGG + chr3_1:67076117-67076136 None:intergenic 45.0%
CAGGGATACAAAGGTAGTGT+AGG + chr3_1:67076166-67076185 None:intergenic 45.0%
GCGGCTGAGATGATAAAACA+GGG + chr3_1:67076184-67076203 None:intergenic 45.0%
TGCGGCTGAGATGATAAAAC+AGG + chr3_1:67076185-67076204 None:intergenic 45.0%
! TTATCTTGATAGCCACTGGC+AGG + chr3_1:67076404-67076423 None:intergenic 45.0%
TTCAGTTCGGTTCTGCAGTT+CGG + chr3_1:67076540-67076559 None:intergenic 45.0%
TTTATAGCCTGCTATGGGCT+TGG - chr3_1:67076972-67076991 Msa0369770:intron 45.0%
TTATAGCCTGCTATGGGCTT+GGG - chr3_1:67076973-67076992 Msa0369770:intron 45.0%
TAGAAGTGATACGACCTTGC+AGG - chr3_1:67077220-67077239 Msa0369770:intron 45.0%
GTTTCATAGCCAATCCTGCA+AGG + chr3_1:67077237-67077256 None:intergenic 45.0%
! GTGAAGTGGTCTAAAGCATG+AGG - chr3_1:67077442-67077461 Msa0369770:intron 45.0%
GTCGGCAGTTCAGTTTAGTT+CGG - chr3_1:67077811-67077830 Msa0369770:intron 45.0%
! CAGTTCAGTTTAGTTCGGTG+TGG - chr3_1:67077816-67077835 Msa0369770:intron 45.0%
! CTGGTGGGCAGTTTAAACTT+CGG + chr3_1:67077855-67077874 None:intergenic 45.0%
!!! ATCTGCAGTCCTTGGTTTTG+TGG - chr3_1:67078014-67078033 Msa0369770:intron 45.0%
!!! TCTGCAGTCCTTGGTTTTGT+GGG - chr3_1:67078015-67078034 Msa0369770:intron 45.0%
ACTTACGAGATAGACGAAGG+TGG + chr3_1:67078143-67078162 None:intergenic 45.0%
CCTACTTACGAGATAGACGA+AGG + chr3_1:67078146-67078165 None:intergenic 45.0%
CCTTCGTCTATCTCGTAAGT+AGG - chr3_1:67078143-67078162 Msa0369770:intron 45.0%
GCTTGTCTCCATGTGAACTT+AGG - chr3_1:67078174-67078193 Msa0369770:CDS 45.0%
AGTAACGAGTGAAGGATCTG+TGG + chr3_1:67078744-67078763 None:intergenic 45.0%
TAGAGGATAAGAGGGAGTTC+TGG + chr3_1:67078936-67078955 None:intergenic 45.0%
CCACTTGCATAGAGGATAAG+AGG + chr3_1:67078945-67078964 None:intergenic 45.0%
CCTCTTATCCTCTATGCAAG+TGG - chr3_1:67078942-67078961 Msa0369770:CDS 45.0%
ATCCTCTATGCAAGTGGATC+AGG - chr3_1:67078948-67078967 Msa0369770:CDS 45.0%
CAAGCTTACAACATCCACAC+CGG + chr3_1:67079000-67079019 None:intergenic 45.0%
! CTTGGATTGGACGGTTGATA+TGG - chr3_1:67079016-67079035 Msa0369770:intron 45.0%
TTGATATGGCTGACGGTAGA+AGG - chr3_1:67079030-67079049 Msa0369770:intron 45.0%
GGACCAAATGTAGCTATCCA+AGG - chr3_1:67079059-67079078 Msa0369770:intron 45.0%
CACCAGGATCAACATTACCT+TGG + chr3_1:67079079-67079098 None:intergenic 45.0%
GTTGATCCTGGTGTTCTGTT+TGG - chr3_1:67079086-67079105 Msa0369770:intron 45.0%
TTCGATCCAAACAGAACACC+AGG + chr3_1:67079095-67079114 None:intergenic 45.0%
CGAAAGAGCTGATTACCGAT+AGG - chr3_1:67079111-67079130 Msa0369770:intron 45.0%
CACGGTATCGTGTATCCTAT+CGG + chr3_1:67079129-67079148 None:intergenic 45.0%
GATACACGATACCGTGAGAA+AGG - chr3_1:67079133-67079152 Msa0369770:intron 45.0%
GGGAAACATATCCTGAACCT+TGG - chr3_1:67079164-67079183 Msa0369770:intron 45.0%
CATATCCTGAACCTTGGTCA+CGG - chr3_1:67079170-67079189 Msa0369770:intron 45.0%
GGCGAAGTATGGGAAGGATA+AGG + chr3_1:67074559-67074578 None:intergenic 50.0%
TTACGGTACGGGCGAAGTAT+GGG + chr3_1:67074569-67074588 None:intergenic 50.0%
! ATGGGTAAAAGGGTGTGGTG+TGG + chr3_1:67074742-67074761 None:intergenic 50.0%
! ACAAGCTGGGAGGTACATGA+AGG - chr3_1:67075069-67075088 Msa0369770:CDS 50.0%
TACAAGCCGGAGGTTTAGTC+AGG + chr3_1:67075169-67075188 None:intergenic 50.0%
! GACTAAACCTCCGGCTTGTA+AGG - chr3_1:67075169-67075188 Msa0369770:CDS 50.0%
! TAAACCTCCGGCTTGTAAGG+TGG - chr3_1:67075172-67075191 Msa0369770:CDS 50.0%
! AAACCTCCGGCTTGTAAGGT+GGG - chr3_1:67075173-67075192 Msa0369770:CDS 50.0%
CAGATCTTTCCCGGAATGAC+GGG + chr3_1:67075753-67075772 None:intergenic 50.0%
TCAGGCTGGAAAACCTTCCA+CGG + chr3_1:67075811-67075830 None:intergenic 50.0%
! TGGAAGGTTTTCCAGCCTGA+TGG - chr3_1:67075811-67075830 Msa0369770:intron 50.0%
! GGAAGGTTTTCCAGCCTGAT+GGG - chr3_1:67075812-67075831 Msa0369770:intron 50.0%
! GAAGGTTTTCCAGCCTGATG+GGG - chr3_1:67075813-67075832 Msa0369770:intron 50.0%
CACTTGATCAACTTGGCCTG+CGG + chr3_1:67076067-67076086 None:intergenic 50.0%
!! CAGGCCAAGTTGATCAAGTG+AGG - chr3_1:67076067-67076086 Msa0369770:intron 50.0%
AGTGAGGGAGTTTATTCCCG+AGG - chr3_1:67076083-67076102 Msa0369770:intron 50.0%
GTTGAACAGTCCTAGTCTCC+AGG + chr3_1:67076518-67076537 None:intergenic 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG - chr3_1:67077002-67077021 Msa0369770:intron 50.0%
TGCTTGGTTCCCAAGCAACA+GGG - chr3_1:67077003-67077022 Msa0369770:intron 50.0%
! TTCCCAAGCAACAGGGGTAT+TGG - chr3_1:67077010-67077029 Msa0369770:intron 50.0%
! CACCAATACCCCTGTTGCTT+GGG + chr3_1:67077015-67077034 None:intergenic 50.0%
ACACCAATACCCCTGTTGCT+TGG + chr3_1:67077016-67077035 None:intergenic 50.0%
CTTAGATGGGCGATGCCTTA+AGG - chr3_1:67077067-67077086 Msa0369770:intron 50.0%
!! AGGCTCTAAGACCTCCAGAA+GGG + chr3_1:67077137-67077156 None:intergenic 50.0%
!! AAGGCTCTAAGACCTCCAGA+AGG + chr3_1:67077138-67077157 None:intergenic 50.0%
TGGAGGTCTTAGAGCCTTTC+TGG - chr3_1:67077140-67077159 Msa0369770:intron 50.0%
AGGTCTTAGAGCCTTTCTGG+AGG - chr3_1:67077143-67077162 Msa0369770:intron 50.0%
GGTCTTAGAGCCTTTCTGGA+GGG - chr3_1:67077144-67077163 Msa0369770:intron 50.0%
TGGAGGGCTTCTAAGCCTTT+AGG - chr3_1:67077160-67077179 Msa0369770:intron 50.0%
GTGATACGACCTTGCAGGAT+TGG - chr3_1:67077225-67077244 Msa0369770:intron 50.0%
GATGTCGGTGCACAGTTATG+TGG - chr3_1:67077678-67077697 Msa0369770:intron 50.0%
GGGTTTGAACCAGTAGAGCA+TGG - chr3_1:67077717-67077736 Msa0369770:intron 50.0%
! TTTGGTGCACCATGCTCTAC+TGG + chr3_1:67077729-67077748 None:intergenic 50.0%
ACATACGACGCCAGGGTAAA+CGG + chr3_1:67078045-67078064 None:intergenic 50.0%
TTCAACCACATACGACGCCA+GGG + chr3_1:67078052-67078071 None:intergenic 50.0%
!! GGATAAGAGGGAGTTCTGGA+TGG + chr3_1:67078932-67078951 None:intergenic 50.0%
CTCCTGATCCACTTGCATAG+AGG + chr3_1:67078953-67078972 None:intergenic 50.0%
CTCTATGCAAGTGGATCAGG+AGG - chr3_1:67078951-67078970 Msa0369770:CDS 50.0%
!! GAGAATAGCATTGACCGGTG+TGG - chr3_1:67078983-67079002 Msa0369770:CDS 50.0%
CGGTGTGGATGTTGTAAGCT+TGG - chr3_1:67078998-67079017 Msa0369770:CDS 50.0%
! TGGACGGTTGATATGGCTGA+CGG - chr3_1:67079023-67079042 Msa0369770:intron 50.0%
GCTGACGGTAGAAGGAGATT+GGG - chr3_1:67079038-67079057 Msa0369770:intron 50.0%
CATCGTAGTAGGTACTCCTG+AGG - chr3_1:67079193-67079212 Msa0369770:intron 50.0%
GTTACGGTACGGGCGAAGTA+TGG + chr3_1:67074570-67074589 None:intergenic 55.0%
GGCTTATGAGACAAGCTGGG+AGG - chr3_1:67075059-67075078 Msa0369770:CDS 55.0%
GTTGGGCCTGACTAAACCTC+CGG - chr3_1:67075160-67075179 Msa0369770:CDS 55.0%
! AACCTCCGGCTTGTAAGGTG+GGG - chr3_1:67075174-67075193 Msa0369770:CDS 55.0%
TTTGACCCAGTTCACTCCGC+AGG - chr3_1:67076048-67076067 Msa0369770:intron 55.0%
AACACTGTCTGTCCTGCCAG+TGG - chr3_1:67076389-67076408 Msa0369770:intron 55.0%
GACAGTGGGAGGACGAAAGA+AGG - chr3_1:67076751-67076770 Msa0369770:intron 55.0%
CCTGCTATGGGCTTGGGTTT+CGG - chr3_1:67076979-67076998 Msa0369770:intron 55.0%
GCTTGGTTCCCAAGCAACAG+GGG - chr3_1:67077004-67077023 Msa0369770:intron 55.0%
TAAGACCTCCAGAAGGGCTC+AGG + chr3_1:67077131-67077150 None:intergenic 55.0%
GGCTTAGAAGCCCTCCAGAA+AGG + chr3_1:67077157-67077176 None:intergenic 55.0%
! ACGGAGCACCCACAAAACCA+AGG + chr3_1:67078026-67078045 None:intergenic 55.0%
GTTTACCCTGGCGTCGTATG+TGG - chr3_1:67078044-67078063 Msa0369770:intron 55.0%
CTTCAACCACATACGACGCC+AGG + chr3_1:67078053-67078072 None:intergenic 55.0%
CTGGCGTCGTATGTGGTTGA+AGG - chr3_1:67078051-67078070 Msa0369770:intron 55.0%
GCGTCGTATGTGGTTGAAGG+CGG - chr3_1:67078054-67078073 Msa0369770:intron 55.0%
CTTGCGCTCCATTGTCAGCT+TGG + chr3_1:67078806-67078825 None:intergenic 55.0%
GGCAACAGAGCTTAGTCCAG+TGG - chr3_1:67078848-67078867 Msa0369770:intron 55.0%
GGCTGACGGTAGAAGGAGAT+TGG - chr3_1:67079037-67079056 Msa0369770:intron 55.0%
CACGATACCGTGAGAAAGGC+TGG - chr3_1:67079137-67079156 Msa0369770:intron 55.0%
ACCGTGAGAAAGGCTGGTAG+AGG - chr3_1:67079143-67079162 Msa0369770:intron 55.0%
CCCTCTACCAGCCTTTCTCA+CGG + chr3_1:67079147-67079166 None:intergenic 55.0%
CCGTGAGAAAGGCTGGTAGA+GGG - chr3_1:67079144-67079163 Msa0369770:intron 55.0%
CTACTACGATGCCGTGACCA+AGG + chr3_1:67079184-67079203 None:intergenic 55.0%
CTTGGTCACGGCATCGTAGT+AGG - chr3_1:67079182-67079201 Msa0369770:intron 55.0%
GGTACGGGCGAAGTATGGGA+AGG + chr3_1:67074565-67074584 None:intergenic 60.0%
! TCCGGCTTGTAAGGTGGGGA+CGG - chr3_1:67075178-67075197 Msa0369770:CDS 60.0%
ACCGTCCCCACCTTACAAGC+CGG + chr3_1:67075182-67075201 None:intergenic 60.0%
CTTGGCCTGCGGAGTGAACT+GGG + chr3_1:67076056-67076075 None:intergenic 60.0%
ACTTGGCCTGCGGAGTGAAC+TGG + chr3_1:67076057-67076076 None:intergenic 60.0%
CCGAAACCCAAGCCCATAGC+AGG + chr3_1:67076982-67077001 None:intergenic 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG - chr3_1:67076987-67077006 Msa0369770:intron 60.0%
CAGAAGGGCTCCTGAGACTC+CGG + chr3_1:67077101-67077120 None:intergenic 60.0%
AGTCTCAGGAGCCCTTCTGG+AGG - chr3_1:67077102-67077121 Msa0369770:intron 60.0%
GTCTCAGGAGCCCTTCTGGA+GGG - chr3_1:67077103-67077122 Msa0369770:intron 60.0%
TGTGGGTGCTCCGTTTACCC+TGG - chr3_1:67078032-67078051 Msa0369770:intron 60.0%
CGATGCCGTGACCAAGGTTC+AGG + chr3_1:67079178-67079197 None:intergenic 60.0%
GTCCCCACCTTACAAGCCGG+AGG + chr3_1:67075179-67075198 None:intergenic 65.0%
ATGCCTTAAGGCGAGCGCGC+CGG - chr3_1:67077079-67077098 Msa0369770:intron 65.0%
CGGAGTCTCAGGAGCCCTTC+TGG - chr3_1:67077099-67077118 Msa0369770:intron 65.0%
ACTCCGGCGCGCTCGCCTTA+AGG + chr3_1:67077085-67077104 None:intergenic 70.0%
GGCTCAGGCGCCCTCCAGAA+GGG + chr3_1:67077116-67077135 None:intergenic 70.0%
GGGCTCAGGCGCCCTCCAGA+AGG + chr3_1:67077117-67077136 None:intergenic 75.0%
!! GGAGGGCGCCTGAGCCCTTC+TGG - chr3_1:67077120-67077139 Msa0369770:intron 75.0%
GGGCGCCTGAGCCCTTCTGG+AGG - chr3_1:67077123-67077142 Msa0369770:intron 75.0%
! GGCGAGCGCGCCGGAGTCTC+AGG - chr3_1:67077088-67077107 Msa0369770:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67074532 67079462 67074532 ID=Msa0369770;Name=Msa0369770
chr3_1 mRNA 67074532 67079462 67074532 ID=Msa0369770-mRNA-1;Parent=Msa0369770;Name=Msa0369770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=151|1|1|1|1|1|6|200|389
chr3_1 exon 67074532 67075247 67074532 ID=Msa0369770-mRNA-1:exon:13735;Parent=Msa0369770-mRNA-1
chr3_1 exon 67075866 67075991 67075866 ID=Msa0369770-mRNA-1:exon:13734;Parent=Msa0369770-mRNA-1
chr3_1 exon 67077842 67078030 67077842 ID=Msa0369770-mRNA-1:exon:13733;Parent=Msa0369770-mRNA-1
chr3_1 exon 67078160 67078270 67078160 ID=Msa0369770-mRNA-1:exon:13732;Parent=Msa0369770-mRNA-1
chr3_1 exon 67078904 67079025 67078904 ID=Msa0369770-mRNA-1:exon:13731;Parent=Msa0369770-mRNA-1
chr3_1 exon 67079206 67079462 67079206 ID=Msa0369770-mRNA-1:exon:13730;Parent=Msa0369770-mRNA-1
chr3_1 five_prime_UTR 67079312 67079462 67079312 ID=Msa0369770-mRNA-1:five_prime_utr;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67079206 67079311 67079206 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67078904 67079025 67078904 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67078160 67078270 67078160 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67077842 67078030 67077842 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67075866 67075991 67075866 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 CDS 67074732 67075247 67074732 ID=Msa0369770-mRNA-1:cds;Parent=Msa0369770-mRNA-1
chr3_1 three_prime_UTR 67074532 67074731 67074532 ID=Msa0369770-mRNA-1:three_prime_utr;Parent=Msa0369770-mRNA-1
Gene Sequence

>Msa0369770

ATGTTTTGCGGTGTAGTTAGCACTTCTTTCACTTCCATTTTACCCAGAAAACAACACCACACCACACCCTTTTACCCATTCAAATCCATTCAATGTTCTCTTCCAGGAGCTGTTGCTGAACCTAAAACAACTAATGCCACAGAACCTCTTTTGCTCAATGCAGTTCGGGGATTAGATGTCGAAAGACCTCCTGTTTGGCTTATGAGACAAGCTGGGAGGTACATGAAGAGTTACCAAATCATCTGCGAAAAATACCCGTCATTCCGGGAAAGATCTGAAAACGTTGATCTTGTGGTTGAAATTTCATTGCAACCGTGGAAGGTTTTCCAGCCTGATGGGGTGATATTATTCTCAGATATTCTTACACCACTTTCTGGAATGAATATTCCATTTGACATTGTAAAAGGCAAGGGTCCCGTCATATTTGACCCAGTTCACTCCGCAGGCCAAGTTGATCAAGTGAGGGAGTTTATTCCCGAGGAATCAGTTCCATACGTTGGTGAAGCACTATCAATTTTGCGCAAAGAGGTAGATAATAAATCTGCAGTCCTTGGTTTTGTGGGTGCTCCGTTTACCCTGGCGTCGTATGTGGTTGAAGGCGGTTCATCAAAACATTTCTCTAAAATAAAGAGATTGGCATTCTCTGAACCAAAGATCCTTCACTCGTTACTGCAAAAGTTTACAACATCAATGGCAAGATACATACAATACCAAGCTGACAATGGAGCGCAAGCTGTACAGATATTCGATTCATGGGCAACAGAGCTTAGTCCAGTGGATTTTGAACGATTCAGTTTGCCATACTTGAAGCAAATAATTGACACTGTAAAGAAAAGCCATCCAGAACTCCCTCTTATCCTCTATGCAAGTGGATCAGGAGGCTTACTTGAGAGAATAGCATTGACCGGTGTGGATGTTGTAAGCTTGGATTGGACGGTTGATATGGCTGACGGTAGAAGGAGATTGGGACCAAATGTAGCTATCCAAGGTAATGTTGATCCTGGTGTTCTGTTTGGATCGAAAGAGCTGATTACCGATAGGATACACGATACCGTGAGAAAGGCTGGTAGAGGGAAACATATCCTGAACCTTGGTCACGGCATCGTAGTAGGTACTCCTGAGGAGAATGTAGCACATTTTTTTGAGGTTGCCAAAGGAATCAAATACTAA

Protein sequence

>Msa0369770

MFCGVVSTSFTSILPRKQHHTTPFYPFKSIQCSLPGAVAEPKTTNATEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKSAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFERFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIALTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIKY*