AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419210 MtrunA17_Chr4g0058311 96.602 206 7 0 1 206 1 206 2.66e-152 420
Msa1419210 MtrunA17_Chr4g0058331 96.117 206 8 0 1 206 1 206 6.48e-151 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419210 AT5G50200.1 51.675 209 90 5 1 202 1 205 1.38e-65 201
Msa1419210 AT5G50200.3 51.675 209 90 5 1 202 1 205 1.38e-65 201
Msa1419210 AT5G50200.2 51.675 209 90 5 1 202 1 205 1.38e-65 201
Msa1419210 AT4G24715.1 48.792 207 98 5 1 202 23 226 2.98e-62 193

Find 61 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGCATAACTTCAGCTTTA+TGG 0.105787 tig0024683:-42056 None:intergenic
TCATAATATCATTCCAATTT+TGG 0.111809 tig0024683:+41653 Msa1419210:five_prime_UTR
CATTGTCTTCAGTGCTTTCT+CGG 0.283646 tig0024683:+42378 Msa1419210:CDS
ATCTATGCAGTTATGTTATC+TGG 0.287035 tig0024683:+41962 Msa1419210:intron
CTTGAGAGAAAAGCCAAAAT+TGG 0.287392 tig0024683:-41666 None:intergenic
CTCAAATTCAATCACTGCTT+TGG 0.355774 tig0024683:-42451 None:intergenic
CGCATTTGATTCCAATGATA+AGG 0.357587 tig0024683:+42258 Msa1419210:CDS
TACTTACCTTGTCCATGCTT+AGG 0.361592 tig0024683:-41840 None:intergenic
ACTTACCTTGTCCATGCTTA+GGG 0.362581 tig0024683:-41839 None:intergenic
TTTGAGATCAATGCAATTAG+TGG 0.365486 tig0024683:+42328 Msa1419210:CDS
TCTTACCCGTGTTCGTGGTT+TGG 0.369045 tig0024683:-42294 None:intergenic
ATAAGCCACTTCCTTATCAT+TGG 0.373409 tig0024683:-42269 None:intergenic
TGTTCCTCAAGATTTATTCA+TGG 0.375072 tig0024683:-42559 None:intergenic
GAATCAACCACTCGAAGGTT+TGG 0.410270 tig0024683:-42195 None:intergenic
TGTTTAGCTGAAATTTGTTA+TGG 0.421382 tig0024683:+41768 Msa1419210:CDS
AATGATAAGGAAGTGGCTTA+TGG 0.425454 tig0024683:+42271 Msa1419210:CDS
GCTTTCTCGGTTGTGTCCCT+AGG 0.446758 tig0024683:+42391 Msa1419210:CDS
TAGGATGAGTCTGTTCCAGC+TGG 0.461830 tig0024683:-42028 None:intergenic
AAAGAAAAGTCAACTATGAA+AGG 0.484761 tig0024683:-41696 None:intergenic
GCTACTCTTACCCGTGTTCG+TGG 0.490262 tig0024683:-42299 None:intergenic
AGCTGAAATTTGTTATGGAA+AGG 0.496497 tig0024683:+41773 Msa1419210:CDS
GTCCCTAGAGAGTTCATCCT+CGG 0.498694 tig0024683:-42116 None:intergenic
CTTCTATATTGAAAAGAGGA+AGG 0.500127 tig0024683:+42420 Msa1419210:CDS
AGACCGAGGATGAACTCTCT+AGG 0.513840 tig0024683:+42113 Msa1419210:CDS
TAGGGGAAGCTGTGACATCA+AGG 0.517766 tig0024683:-41821 None:intergenic
TGATTCCAATGATAAGGAAG+TGG 0.518875 tig0024683:+42264 Msa1419210:CDS
AAGAAAAGTCAACTATGAAA+GGG 0.520049 tig0024683:-41695 None:intergenic
TGATTGAATTTGAGTGACAT+AGG 0.520789 tig0024683:+42460 Msa1419210:exon
TGTTCTTCTATATTGAAAAG+AGG 0.526365 tig0024683:+42416 Msa1419210:CDS
GTTGGAAGCATTGTAGGGCA+TGG 0.526614 tig0024683:-42164 None:intergenic
CAATATAGAAGAACACGCCT+AGG 0.537687 tig0024683:-42408 None:intergenic
CTACAATGCTTCCAACAAAA+CGG 0.547064 tig0024683:+42171 Msa1419210:CDS
CTAAACAAAACTTTCCCAGC+TGG 0.548684 tig0024683:+42013 Msa1419210:CDS
TAGACAAAATCAGTGGGACA+TGG 0.555670 tig0024683:+41987 Msa1419210:CDS
GACCGAGGATGAACTCTCTA+GGG 0.561011 tig0024683:+42114 Msa1419210:CDS
TTCTATATTGAAAAGAGGAA+GGG 0.562873 tig0024683:+42421 Msa1419210:CDS
CGAGAAAGCACTGAAGACAA+TGG 0.583492 tig0024683:-42377 None:intergenic
GTCACAGCTTCCCCTAAGCA+TGG 0.584742 tig0024683:+41828 Msa1419210:CDS
TATGGCCAAACCACGAACAC+GGG 0.596066 tig0024683:+42289 Msa1419210:CDS
TTATGGCCAAACCACGAACA+CGG 0.597854 tig0024683:+42288 Msa1419210:CDS
ATAACCATGAATAAATCTTG+AGG 0.606768 tig0024683:+42555 Msa1419210:three_prime_UTR
CTTACCTTGTCCATGCTTAG+GGG 0.615805 tig0024683:-41838 None:intergenic
AGACAAAATCAGTGGGACAT+GGG 0.616176 tig0024683:+41988 Msa1419210:CDS
AGGGGAAGCTGTGACATCAA+GGG 0.633811 tig0024683:-41820 None:intergenic
AATATAGAAGAACACGCCTA+GGG 0.636139 tig0024683:-42407 None:intergenic
GTAGGCACGTACAAAGTATG+TGG 0.636608 tig0024683:-42236 None:intergenic
CTGGAGTAGACAAAATCAGT+GGG 0.640296 tig0024683:+41981 Msa1419210:CDS
TATGGCAGCACACAAGCTTG+TGG 0.642279 tig0024683:+41725 Msa1419210:exon
AGGATGAGTCTGTTCCAGCT+GGG 0.643710 tig0024683:-42027 None:intergenic
TCTGGAGTAGACAAAATCAG+TGG 0.645792 tig0024683:+41980 Msa1419210:CDS
ATCATTGGAATCAAATGCGT+AGG 0.647510 tig0024683:-42254 None:intergenic
CCTCGGTCTTTCTCCAAGCG+CGG 0.651070 tig0024683:-42099 None:intergenic
GCGCAGAATCAACCACTCGA+AGG 0.651463 tig0024683:-42200 None:intergenic
GCTTCCCCTAAGCATGGACA+AGG 0.668529 tig0024683:+41834 Msa1419210:CDS
AAACGGTCCAAACCTTCGAG+TGG 0.693663 tig0024683:+42188 Msa1419210:CDS
AGCAGATATCAAGAGTCGCG+TGG 0.697710 tig0024683:-42354 None:intergenic
AGATATCAAGAGTCGCGTGG+CGG 0.700580 tig0024683:-42351 None:intergenic
CCGCGCTTGGAGAAAGACCG+AGG 0.703551 tig0024683:+42099 Msa1419210:CDS
CGTACAAAGTATGTGGCCTG+AGG 0.703950 tig0024683:-42229 None:intergenic
GAGTGACATAGGAAACCTCG+TGG 0.728451 tig0024683:+42471 Msa1419210:three_prime_UTR
AAAGCTGAAGTTATGCTACG+CGG 0.775950 tig0024683:+42060 Msa1419210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATAATATCATTCCAATTT+TGG + tig0024683:41653-41672 Msa1419210:five_prime_UTR 20.0%
!! CAAAATTGAGTTTATATTGA+AGG - tig0024683:41933-41952 None:intergenic 20.0%
!!! TCATAATATCATTCCAATTT+TGG + tig0024683:41653-41672 Msa1419210:five_prime_UTR 20.0%
!! CAAAATTGAGTTTATATTGA+AGG - tig0024683:41933-41952 None:intergenic 20.0%
! AAGAAAAGTCAACTATGAAA+GGG - tig0024683:41698-41717 None:intergenic 25.0%
! AAAGAAAAGTCAACTATGAA+AGG - tig0024683:41699-41718 None:intergenic 25.0%
!!! TGTTTAGCTGAAATTTGTTA+TGG + tig0024683:41768-41787 Msa1419210:CDS 25.0%
! TAATTAAATACGCCAATACA+AGG - tig0024683:41882-41901 None:intergenic 25.0%
! TGTTCTTCTATATTGAAAAG+AGG + tig0024683:42416-42435 Msa1419210:CDS 25.0%
! TTCTATATTGAAAAGAGGAA+GGG + tig0024683:42421-42440 Msa1419210:CDS 25.0%
! ATAACCATGAATAAATCTTG+AGG + tig0024683:42555-42574 Msa1419210:three_prime_UTR 25.0%
! AAGAAAAGTCAACTATGAAA+GGG - tig0024683:41698-41717 None:intergenic 25.0%
! AAAGAAAAGTCAACTATGAA+AGG - tig0024683:41699-41718 None:intergenic 25.0%
!!! TGTTTAGCTGAAATTTGTTA+TGG + tig0024683:41768-41787 Msa1419210:CDS 25.0%
! TAATTAAATACGCCAATACA+AGG - tig0024683:41882-41901 None:intergenic 25.0%
! TGTTCTTCTATATTGAAAAG+AGG + tig0024683:42416-42435 Msa1419210:CDS 25.0%
! TTCTATATTGAAAAGAGGAA+GGG + tig0024683:42421-42440 Msa1419210:CDS 25.0%
! ATAACCATGAATAAATCTTG+AGG + tig0024683:42555-42574 Msa1419210:three_prime_UTR 25.0%
!!! TGACTTTTCTTTTAGAGCTA+TGG + tig0024683:41707-41726 Msa1419210:exon 30.0%
!! AGCTGAAATTTGTTATGGAA+AGG + tig0024683:41773-41792 Msa1419210:CDS 30.0%
! TAAGATTTTGCACCTTGTAT+TGG + tig0024683:41867-41886 Msa1419210:intron 30.0%
ATCTATGCAGTTATGTTATC+TGG + tig0024683:41962-41981 Msa1419210:intron 30.0%
! TTTGAGATCAATGCAATTAG+TGG + tig0024683:42328-42347 Msa1419210:CDS 30.0%
CTTCTATATTGAAAAGAGGA+AGG + tig0024683:42420-42439 Msa1419210:CDS 30.0%
TGATTGAATTTGAGTGACAT+AGG + tig0024683:42460-42479 Msa1419210:exon 30.0%
TGTTCCTCAAGATTTATTCA+TGG - tig0024683:42562-42581 None:intergenic 30.0%
!!! TGACTTTTCTTTTAGAGCTA+TGG + tig0024683:41707-41726 Msa1419210:exon 30.0%
!! AGCTGAAATTTGTTATGGAA+AGG + tig0024683:41773-41792 Msa1419210:CDS 30.0%
! TAAGATTTTGCACCTTGTAT+TGG + tig0024683:41867-41886 Msa1419210:intron 30.0%
ATCTATGCAGTTATGTTATC+TGG + tig0024683:41962-41981 Msa1419210:intron 30.0%
! TTTGAGATCAATGCAATTAG+TGG + tig0024683:42328-42347 Msa1419210:CDS 30.0%
CTTCTATATTGAAAAGAGGA+AGG + tig0024683:42420-42439 Msa1419210:CDS 30.0%
TGATTGAATTTGAGTGACAT+AGG + tig0024683:42460-42479 Msa1419210:exon 30.0%
TGTTCCTCAAGATTTATTCA+TGG - tig0024683:42562-42581 None:intergenic 30.0%
CTTGAGAGAAAAGCCAAAAT+TGG - tig0024683:41669-41688 None:intergenic 35.0%
!!! CTTCAGCTTTATGGTTTTGT+AGG - tig0024683:42050-42069 None:intergenic 35.0%
GTAGCATAACTTCAGCTTTA+TGG - tig0024683:42059-42078 None:intergenic 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG - tig0024683:42172-42191 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG + tig0024683:42171-42190 Msa1419210:CDS 35.0%
ATCATTGGAATCAAATGCGT+AGG - tig0024683:42257-42276 None:intergenic 35.0%
CGCATTTGATTCCAATGATA+AGG + tig0024683:42258-42277 Msa1419210:CDS 35.0%
TGATTCCAATGATAAGGAAG+TGG + tig0024683:42264-42283 Msa1419210:CDS 35.0%
ATAAGCCACTTCCTTATCAT+TGG - tig0024683:42272-42291 None:intergenic 35.0%
AATGATAAGGAAGTGGCTTA+TGG + tig0024683:42271-42290 Msa1419210:CDS 35.0%
AATATAGAAGAACACGCCTA+GGG - tig0024683:42410-42429 None:intergenic 35.0%
CTCAAATTCAATCACTGCTT+TGG - tig0024683:42454-42473 None:intergenic 35.0%
!! TATTTTTGTTACAAGCCACG+AGG - tig0024683:42489-42508 None:intergenic 35.0%
CTTGAGAGAAAAGCCAAAAT+TGG - tig0024683:41669-41688 None:intergenic 35.0%
!!! CTTCAGCTTTATGGTTTTGT+AGG - tig0024683:42050-42069 None:intergenic 35.0%
GTAGCATAACTTCAGCTTTA+TGG - tig0024683:42059-42078 None:intergenic 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG - tig0024683:42172-42191 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG + tig0024683:42171-42190 Msa1419210:CDS 35.0%
ATCATTGGAATCAAATGCGT+AGG - tig0024683:42257-42276 None:intergenic 35.0%
CGCATTTGATTCCAATGATA+AGG + tig0024683:42258-42277 Msa1419210:CDS 35.0%
TGATTCCAATGATAAGGAAG+TGG + tig0024683:42264-42283 Msa1419210:CDS 35.0%
ATAAGCCACTTCCTTATCAT+TGG - tig0024683:42272-42291 None:intergenic 35.0%
AATGATAAGGAAGTGGCTTA+TGG + tig0024683:42271-42290 Msa1419210:CDS 35.0%
AATATAGAAGAACACGCCTA+GGG - tig0024683:42410-42429 None:intergenic 35.0%
CTCAAATTCAATCACTGCTT+TGG - tig0024683:42454-42473 None:intergenic 35.0%
!! TATTTTTGTTACAAGCCACG+AGG - tig0024683:42489-42508 None:intergenic 35.0%
ACTTACCTTGTCCATGCTTA+GGG - tig0024683:41842-41861 None:intergenic 40.0%
TACTTACCTTGTCCATGCTT+AGG - tig0024683:41843-41862 None:intergenic 40.0%
! TCTGGAGTAGACAAAATCAG+TGG + tig0024683:41980-41999 Msa1419210:CDS 40.0%
CTGGAGTAGACAAAATCAGT+GGG + tig0024683:41981-42000 Msa1419210:CDS 40.0%
TAGACAAAATCAGTGGGACA+TGG + tig0024683:41987-42006 Msa1419210:CDS 40.0%
AGACAAAATCAGTGGGACAT+GGG + tig0024683:41988-42007 Msa1419210:CDS 40.0%
CTAAACAAAACTTTCCCAGC+TGG + tig0024683:42013-42032 Msa1419210:CDS 40.0%
AAAGCTGAAGTTATGCTACG+CGG + tig0024683:42060-42079 Msa1419210:CDS 40.0%
! GCATGGCTAACATTTTGTGT+TGG - tig0024683:42150-42169 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG - tig0024683:42173-42192 None:intergenic 40.0%
CATTGTCTTCAGTGCTTTCT+CGG + tig0024683:42378-42397 Msa1419210:CDS 40.0%
CAATATAGAAGAACACGCCT+AGG - tig0024683:42411-42430 None:intergenic 40.0%
ACTTACCTTGTCCATGCTTA+GGG - tig0024683:41842-41861 None:intergenic 40.0%
TACTTACCTTGTCCATGCTT+AGG - tig0024683:41843-41862 None:intergenic 40.0%
! TCTGGAGTAGACAAAATCAG+TGG + tig0024683:41980-41999 Msa1419210:CDS 40.0%
CTGGAGTAGACAAAATCAGT+GGG + tig0024683:41981-42000 Msa1419210:CDS 40.0%
TAGACAAAATCAGTGGGACA+TGG + tig0024683:41987-42006 Msa1419210:CDS 40.0%
AGACAAAATCAGTGGGACAT+GGG + tig0024683:41988-42007 Msa1419210:CDS 40.0%
CTAAACAAAACTTTCCCAGC+TGG + tig0024683:42013-42032 Msa1419210:CDS 40.0%
AAAGCTGAAGTTATGCTACG+CGG + tig0024683:42060-42079 Msa1419210:CDS 40.0%
! GCATGGCTAACATTTTGTGT+TGG - tig0024683:42150-42169 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG - tig0024683:42173-42192 None:intergenic 40.0%
CATTGTCTTCAGTGCTTTCT+CGG + tig0024683:42378-42397 Msa1419210:CDS 40.0%
CAATATAGAAGAACACGCCT+AGG - tig0024683:42411-42430 None:intergenic 40.0%
CTTACCTTGTCCATGCTTAG+GGG - tig0024683:41841-41860 None:intergenic 45.0%
! GAAGGTTTGGACCGTTTTGT+TGG - tig0024683:42185-42204 None:intergenic 45.0%
GAATCAACCACTCGAAGGTT+TGG - tig0024683:42198-42217 None:intergenic 45.0%
GTAGGCACGTACAAAGTATG+TGG - tig0024683:42239-42258 None:intergenic 45.0%
TTATGGCCAAACCACGAACA+CGG + tig0024683:42288-42307 Msa1419210:CDS 45.0%
!! CGAGAAAGCACTGAAGACAA+TGG - tig0024683:42380-42399 None:intergenic 45.0%
CTTACCTTGTCCATGCTTAG+GGG - tig0024683:41841-41860 None:intergenic 45.0%
! GAAGGTTTGGACCGTTTTGT+TGG - tig0024683:42185-42204 None:intergenic 45.0%
GAATCAACCACTCGAAGGTT+TGG - tig0024683:42198-42217 None:intergenic 45.0%
GTAGGCACGTACAAAGTATG+TGG - tig0024683:42239-42258 None:intergenic 45.0%
TTATGGCCAAACCACGAACA+CGG + tig0024683:42288-42307 Msa1419210:CDS 45.0%
!! CGAGAAAGCACTGAAGACAA+TGG - tig0024683:42380-42399 None:intergenic 45.0%
TATGGCAGCACACAAGCTTG+TGG + tig0024683:41725-41744 Msa1419210:exon 50.0%
AGGGGAAGCTGTGACATCAA+GGG - tig0024683:41823-41842 None:intergenic 50.0%
TAGGGGAAGCTGTGACATCA+AGG - tig0024683:41824-41843 None:intergenic 50.0%
AGGATGAGTCTGTTCCAGCT+GGG - tig0024683:42030-42049 None:intergenic 50.0%
TAGGATGAGTCTGTTCCAGC+TGG - tig0024683:42031-42050 None:intergenic 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG - tig0024683:42086-42105 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG + tig0024683:42086-42105 Msa1419210:CDS 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG - tig0024683:42093-42112 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG + tig0024683:42113-42132 Msa1419210:CDS 50.0%
GACCGAGGATGAACTCTCTA+GGG + tig0024683:42114-42133 Msa1419210:CDS 50.0%
GTCCCTAGAGAGTTCATCCT+CGG - tig0024683:42119-42138 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG - tig0024683:42167-42186 None:intergenic 50.0%
AAACGGTCCAAACCTTCGAG+TGG + tig0024683:42188-42207 Msa1419210:CDS 50.0%
CGTACAAAGTATGTGGCCTG+AGG - tig0024683:42232-42251 None:intergenic 50.0%
TATGGCCAAACCACGAACAC+GGG + tig0024683:42289-42308 Msa1419210:CDS 50.0%
TCTTACCCGTGTTCGTGGTT+TGG - tig0024683:42297-42316 None:intergenic 50.0%
AGATATCAAGAGTCGCGTGG+CGG - tig0024683:42354-42373 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG - tig0024683:42357-42376 None:intergenic 50.0%
GAGTGACATAGGAAACCTCG+TGG + tig0024683:42471-42490 Msa1419210:three_prime_UTR 50.0%
TATGGCAGCACACAAGCTTG+TGG + tig0024683:41725-41744 Msa1419210:exon 50.0%
AGGGGAAGCTGTGACATCAA+GGG - tig0024683:41823-41842 None:intergenic 50.0%
TAGGGGAAGCTGTGACATCA+AGG - tig0024683:41824-41843 None:intergenic 50.0%
AGGATGAGTCTGTTCCAGCT+GGG - tig0024683:42030-42049 None:intergenic 50.0%
TAGGATGAGTCTGTTCCAGC+TGG - tig0024683:42031-42050 None:intergenic 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG - tig0024683:42086-42105 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG + tig0024683:42086-42105 Msa1419210:CDS 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG - tig0024683:42093-42112 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG + tig0024683:42113-42132 Msa1419210:CDS 50.0%
GACCGAGGATGAACTCTCTA+GGG + tig0024683:42114-42133 Msa1419210:CDS 50.0%
GTCCCTAGAGAGTTCATCCT+CGG - tig0024683:42119-42138 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG - tig0024683:42167-42186 None:intergenic 50.0%
AAACGGTCCAAACCTTCGAG+TGG + tig0024683:42188-42207 Msa1419210:CDS 50.0%
CGTACAAAGTATGTGGCCTG+AGG - tig0024683:42232-42251 None:intergenic 50.0%
TATGGCCAAACCACGAACAC+GGG + tig0024683:42289-42308 Msa1419210:CDS 50.0%
TCTTACCCGTGTTCGTGGTT+TGG - tig0024683:42297-42316 None:intergenic 50.0%
AGATATCAAGAGTCGCGTGG+CGG - tig0024683:42354-42373 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG - tig0024683:42357-42376 None:intergenic 50.0%
GAGTGACATAGGAAACCTCG+TGG + tig0024683:42471-42490 Msa1419210:three_prime_UTR 50.0%
GTCACAGCTTCCCCTAAGCA+TGG + tig0024683:41828-41847 Msa1419210:CDS 55.0%
GCTTCCCCTAAGCATGGACA+AGG + tig0024683:41834-41853 Msa1419210:CDS 55.0%
GCGCAGAATCAACCACTCGA+AGG - tig0024683:42203-42222 None:intergenic 55.0%
GCTACTCTTACCCGTGTTCG+TGG - tig0024683:42302-42321 None:intergenic 55.0%
GCTTTCTCGGTTGTGTCCCT+AGG + tig0024683:42391-42410 Msa1419210:CDS 55.0%
GTCACAGCTTCCCCTAAGCA+TGG + tig0024683:41828-41847 Msa1419210:CDS 55.0%
GCTTCCCCTAAGCATGGACA+AGG + tig0024683:41834-41853 Msa1419210:CDS 55.0%
GCGCAGAATCAACCACTCGA+AGG - tig0024683:42203-42222 None:intergenic 55.0%
GCTACTCTTACCCGTGTTCG+TGG - tig0024683:42302-42321 None:intergenic 55.0%
GCTTTCTCGGTTGTGTCCCT+AGG + tig0024683:42391-42410 Msa1419210:CDS 55.0%
CCTCGGTCTTTCTCCAAGCG+CGG - tig0024683:42102-42121 None:intergenic 60.0%
CCTCGGTCTTTCTCCAAGCG+CGG - tig0024683:42102-42121 None:intergenic 60.0%
CCGCGCTTGGAGAAAGACCG+AGG + tig0024683:42099-42118 Msa1419210:CDS 65.0%
GATTCTGCGCGACGTGCCTC+AGG + tig0024683:42213-42232 Msa1419210:CDS 65.0%
CCGCGCTTGGAGAAAGACCG+AGG + tig0024683:42099-42118 Msa1419210:CDS 65.0%
GATTCTGCGCGACGTGCCTC+AGG + tig0024683:42213-42232 Msa1419210:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0024683 gene 41644 42601 41644 ID=Msa1419210;Name=Msa1419210
tig0024683 mRNA 41644 42601 41644 ID=Msa1419210-mRNA-1;Parent=Msa1419210;Name=Msa1419210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|1|2|139|206
tig0024683 exon 41644 41855 41644 ID=Msa1419210-mRNA-1:exon:803;Parent=Msa1419210-mRNA-1
tig0024683 exon 41972 42601 41972 ID=Msa1419210-mRNA-1:exon:804;Parent=Msa1419210-mRNA-1
tig0024683 five_prime_UTR 41644 41725 41644 ID=Msa1419210-mRNA-1:five_prime_utr;Parent=Msa1419210-mRNA-1
tig0024683 CDS 41726 41855 41726 ID=Msa1419210-mRNA-1:cds;Parent=Msa1419210-mRNA-1
tig0024683 CDS 41972 42462 41972 ID=Msa1419210-mRNA-1:cds;Parent=Msa1419210-mRNA-1
tig0024683 three_prime_UTR 42463 42601 42463 ID=Msa1419210-mRNA-1:three_prime_utr;Parent=Msa1419210-mRNA-1
Gene Sequence

>Msa1419210

ATGGCAGCACACAAGCTTGTGGTAGCATCACTTCTTCTATGCTGTTTAGCTGAAATTTGTTATGGAAAGGATCTCTTTTCTTCTTTGAAAAGAACCCTTGATGTCACAGCTTCCCCTAAGCATGGACAAGTTATGTTATCTGGAGTAGACAAAATCAGTGGGACATGGGCTCTAAACAAAACTTTCCCAGCTGGAACAGACTCATCCTACAAAACCATAAAGCTGAAGTTATGCTACGCGGCCATAAGCCAAAAAGACCGCGCTTGGAGAAAGACCGAGGATGAACTCTCTAGGGACAAAACTTGCCAACACAAAATGTTAGCCATGCCCTACAATGCTTCCAACAAAACGGTCCAAACCTTCGAGTGGTTGATTCTGCGCGACGTGCCTCAGGCCACATACTTTGTACGTGCCTACGCATTTGATTCCAATGATAAGGAAGTGGCTTATGGCCAAACCACGAACACGGGTAAGAGTAGCAACTTGTTTGAGATCAATGCAATTAGTGGCCGCCACGCGACTCTTGATATCTGCTCCATTGTCTTCAGTGCTTTCTCGGTTGTGTCCCTAGGCGTGTTCTTCTATATTGAAAAGAGGAAGGGAAAGTCACCAAAGCAGTGA

Protein sequence

>Msa1419210

MAAHKLVVASLLLCCLAEICYGKDLFSSLKRTLDVTASPKHGQVMLSGVDKISGTWALNKTFPAGTDSSYKTIKLKLCYAAISQKDRAWRKTEDELSRDKTCQHKMLAMPYNASNKTVQTFEWLILRDVPQATYFVRAYAFDSNDKEVAYGQTTNTGKSSNLFEINAISGRHATLDICSIVFSAFSVVSLGVFFYIEKRKGKSPKQ*