Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419210 | sp|Q9FGS5|NRT31_ARATH | 51.675 | 209 | 90 | 5 | 1 | 202 | 1 | 205 | 1.36e-64 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419210 | I3SMV0 | 96.602 | 206 | 7 | 0 | 1 | 206 | 1 | 206 | 1.38e-148 | 420 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030710 | Msa1419210 | -0.815343 | 9.705469e-52 | -8.615850e-47 |
Msa0046680 | Msa1419210 | 0.836274 | 1.030021e-56 | -8.615850e-47 |
Msa0049670 | Msa1419210 | -0.815124 | 1.085414e-51 | -8.615850e-47 |
Msa0059420 | Msa1419210 | 0.802302 | 5.983011e-49 | -8.615850e-47 |
Msa0064990 | Msa1419210 | 0.817427 | 3.315943e-52 | -8.615850e-47 |
Msa0093530 | Msa1419210 | 0.802643 | 5.089085e-49 | -8.615850e-47 |
Msa0098380 | Msa1419210 | 0.801539 | 8.583272e-49 | -8.615850e-47 |
Msa0107830 | Msa1419210 | 0.838033 | 3.656638e-57 | -8.615850e-47 |
Msa1355330 | Msa1419210 | 0.812540 | 4.027828e-51 | -8.615850e-47 |
Msa1374210 | Msa1419210 | -0.820962 | 5.198935e-53 | -8.615850e-47 |
Msa1398110 | Msa1419210 | 0.850210 | 1.967596e-60 | -8.615850e-47 |
Msa1398120 | Msa1419210 | 0.820115 | 8.134283e-53 | -8.615850e-47 |
Msa1412360 | Msa1419210 | 0.809163 | 2.167252e-50 | -8.615850e-47 |
Msa1419200 | Msa1419210 | 0.824826 | 6.538451e-54 | -8.615850e-47 |
Msa1419210 | Msa1426690 | -0.814240 | 1.704364e-51 | -8.615850e-47 |
Msa1419210 | Msa1433060 | -0.813916 | 2.009293e-51 | -8.615850e-47 |
Msa1419210 | Msa1459920 | 0.818044 | 2.407341e-52 | -8.615850e-47 |
Msa1419210 | Msa1459930 | 0.849015 | 4.239131e-60 | -8.615850e-47 |
Msa0625550 | Msa1419210 | -0.815562 | 8.676403e-52 | -8.615850e-47 |
Msa0628200 | Msa1419210 | 0.816916 | 4.321918e-52 | -8.615850e-47 |
Msa0629030 | Msa1419210 | 0.830347 | 3.090778e-55 | -8.615850e-47 |
Msa0629040 | Msa1419210 | 0.835866 | 1.307724e-56 | -8.615850e-47 |
Msa0630130 | Msa1419210 | 0.818292 | 2.115525e-52 | -8.615850e-47 |
Msa0634290 | Msa1419210 | 0.820118 | 8.120414e-53 | -8.615850e-47 |
Msa0639400 | Msa1419210 | 0.813784 | 2.147665e-51 | -8.615850e-47 |
Msa0639410 | Msa1419210 | 0.820271 | 7.491068e-53 | -8.615850e-47 |
Msa0651820 | Msa1419210 | 0.831227 | 1.881421e-55 | -8.615850e-47 |
Msa0657260 | Msa1419210 | 0.834569 | 2.779023e-56 | -8.615850e-47 |
Msa0666580 | Msa1419210 | 0.832118 | 1.134437e-55 | -8.615850e-47 |
Msa0668210 | Msa1419210 | 0.807531 | 4.829065e-50 | -8.615850e-47 |
Msa0668220 | Msa1419210 | 0.824561 | 7.550370e-54 | -8.615850e-47 |
Msa0682410 | Msa1419210 | 0.802294 | 6.005273e-49 | -8.615850e-47 |
Msa0682420 | Msa1419210 | 0.824623 | 7.301462e-54 | -8.615850e-47 |
Msa0701490 | Msa1419210 | 0.842061 | 3.254103e-58 | -8.615850e-47 |
Msa0701560 | Msa1419210 | 0.842372 | 2.691529e-58 | -8.615850e-47 |
Msa0715260 | Msa1419210 | 0.814423 | 1.552039e-51 | -8.615850e-47 |
Msa0716620 | Msa1419210 | 0.817198 | 3.734524e-52 | -8.615850e-47 |
Msa0721260 | Msa1419210 | 0.842750 | 2.136440e-58 | -8.615850e-47 |
Msa0728520 | Msa1419210 | 0.855131 | 7.750112e-62 | -8.615850e-47 |
Msa0738570 | Msa1419210 | 0.837035 | 6.590739e-57 | -8.615850e-47 |
Msa0738660 | Msa1419210 | 0.806997 | 6.268273e-50 | -8.615850e-47 |
Msa0744550 | Msa1419210 | 0.829868 | 4.046054e-55 | -8.615850e-47 |
Msa0744560 | Msa1419210 | 0.815874 | 7.393290e-52 | -8.615850e-47 |
Msa0753410 | Msa1419210 | 0.853518 | 2.267058e-61 | -8.615850e-47 |
Msa0754530 | Msa1419210 | 0.800083 | 1.702077e-48 | -8.615850e-47 |
Msa0757240 | Msa1419210 | 0.819904 | 9.090806e-53 | -8.615850e-47 |
Msa0762470 | Msa1419210 | -0.804073 | 2.573698e-49 | -8.615850e-47 |
Msa0772350 | Msa1419210 | 0.810655 | 1.034873e-50 | -8.615850e-47 |
Msa0776540 | Msa1419210 | 0.860497 | 1.982757e-63 | -8.615850e-47 |
Msa0783580 | Msa1419210 | 0.826280 | 2.957879e-54 | -8.615850e-47 |
Msa0793570 | Msa1419210 | 0.815123 | 1.086189e-51 | -8.615850e-47 |
Msa0795320 | Msa1419210 | 0.826952 | 2.045419e-54 | -8.615850e-47 |
Msa0795330 | Msa1419210 | 0.848931 | 4.475287e-60 | -8.615850e-47 |
Msa0798230 | Msa1419210 | 0.818114 | 2.320431e-52 | -8.615850e-47 |
Msa0812050 | Msa1419210 | 0.813965 | 1.959737e-51 | -8.615850e-47 |
Msa0819110 | Msa1419210 | 0.826419 | 2.741736e-54 | -8.615850e-47 |
Msa0826360 | Msa1419210 | 0.849546 | 3.016196e-60 | -8.615850e-47 |
Msa0826370 | Msa1419210 | 0.822664 | 2.099210e-53 | -8.615850e-47 |
Msa0836740 | Msa1419210 | 0.817008 | 4.121132e-52 | -8.615850e-47 |
Msa0837550 | Msa1419210 | 0.828234 | 1.006944e-54 | -8.615850e-47 |
Msa0129290 | Msa1419210 | 0.829531 | 4.887892e-55 | -8.615850e-47 |
Msa0143640 | Msa1419210 | 0.806526 | 7.881160e-50 | -8.615850e-47 |
Msa0143830 | Msa1419210 | 0.802761 | 4.811172e-49 | -8.615850e-47 |
Msa0199860 | Msa1419210 | 0.812575 | 3.956783e-51 | -8.615850e-47 |
Msa0200090 | Msa1419210 | 0.818880 | 1.556232e-52 | -8.615850e-47 |
Msa0207930 | Msa1419210 | 0.851490 | 8.580665e-61 | -8.615850e-47 |
Msa0207970 | Msa1419210 | 0.854104 | 1.537286e-61 | -8.615850e-47 |
Msa0212550 | Msa1419210 | 0.803264 | 3.788446e-49 | -8.615850e-47 |
Msa0228360 | Msa1419210 | -0.818692 | 1.717053e-52 | -8.615850e-47 |
Msa1239190 | Msa1419210 | 0.802511 | 5.419949e-49 | -8.615850e-47 |
Msa1245890 | Msa1419210 | 0.817208 | 3.715074e-52 | -8.615850e-47 |
Msa1251960 | Msa1419210 | -0.800904 | 1.158152e-48 | -8.615850e-47 |
Msa1254870 | Msa1419210 | 0.800422 | 1.451746e-48 | -8.615850e-47 |
Msa1259030 | Msa1419210 | 0.816650 | 4.958335e-52 | -8.615850e-47 |
Msa1261860 | Msa1419210 | -0.802001 | 6.900451e-49 | -8.615850e-47 |
Msa1303150 | Msa1419210 | 0.812698 | 3.719359e-51 | -8.615850e-47 |
Msa1328430 | Msa1419210 | 0.801185 | 1.014644e-48 | -8.615850e-47 |
Msa1334000 | Msa1419210 | 0.808528 | 2.962694e-50 | -8.615850e-47 |
Msa0390200 | Msa1419210 | 0.828976 | 6.661728e-55 | -8.615850e-47 |
Msa0418150 | Msa1419210 | 0.814903 | 1.215251e-51 | -8.615850e-47 |
Msa0421080 | Msa1419210 | 0.841902 | 3.584372e-58 | -8.615850e-47 |
Msa0433090 | Msa1419210 | 0.800404 | 1.464285e-48 | -8.615850e-47 |
Msa0464300 | Msa1419210 | 0.819458 | 1.149438e-52 | -8.615850e-47 |
Msa0466850 | Msa1419210 | 0.837813 | 4.164633e-57 | -8.615850e-47 |
Msa0480540 | Msa1419210 | 0.828626 | 8.099090e-55 | -8.615850e-47 |
Msa0480550 | Msa1419210 | 0.814626 | 1.400102e-51 | -8.615850e-47 |
Msa1023430 | Msa1419210 | 0.860345 | 2.203315e-63 | -8.615850e-47 |
Msa1035050 | Msa1419210 | 0.822361 | 2.468628e-53 | -8.615850e-47 |
Msa1037360 | Msa1419210 | 0.816256 | 6.074008e-52 | -8.615850e-47 |
Msa1061840 | Msa1419210 | 0.849195 | 3.778825e-60 | -8.615850e-47 |
Msa1064940 | Msa1419210 | 0.810685 | 1.019515e-50 | -8.615850e-47 |
Msa1069250 | Msa1419210 | 0.800002 | 1.767788e-48 | -8.615850e-47 |
Msa1085820 | Msa1419210 | 0.803051 | 4.191837e-49 | -8.615850e-47 |
Msa1087380 | Msa1419210 | 0.821106 | 4.815490e-53 | -8.615850e-47 |
Msa0245000 | Msa1419210 | 0.804464 | 2.133595e-49 | -8.615850e-47 |
Msa0258280 | Msa1419210 | -0.813145 | 2.967734e-51 | -8.615850e-47 |
Msa0266640 | Msa1419210 | 0.815547 | 8.742985e-52 | -8.615850e-47 |
Msa0266650 | Msa1419210 | 0.821389 | 4.144722e-53 | -8.615850e-47 |
Msa0271700 | Msa1419210 | 0.818804 | 1.619065e-52 | -8.615850e-47 |
Msa0271720 | Msa1419210 | 0.802744 | 4.850714e-49 | -8.615850e-47 |
Msa0274260 | Msa1419210 | 0.824822 | 6.554949e-54 | -8.615850e-47 |
Msa0316230 | Msa1419210 | 0.801447 | 8.965202e-49 | -8.615850e-47 |
Msa0319830 | Msa1419210 | 0.800587 | 1.343749e-48 | -8.615850e-47 |
Msa0320130 | Msa1419210 | 0.832268 | 1.041532e-55 | -8.615850e-47 |
Msa0320140 | Msa1419210 | 0.828295 | 9.730937e-55 | -8.615850e-47 |
Msa0324810 | Msa1419210 | 0.805011 | 1.640179e-49 | -8.615850e-47 |
Msa0346170 | Msa1419210 | 0.814903 | 1.215203e-51 | -8.615850e-47 |
Msa1107510 | Msa1419210 | 0.846439 | 2.170256e-59 | -8.615850e-47 |
Msa1109880 | Msa1419210 | 0.800369 | 1.488482e-48 | -8.615850e-47 |
Msa1110900 | Msa1419210 | 0.812777 | 3.573321e-51 | -8.615850e-47 |
Msa1123000 | Msa1419210 | 0.810634 | 1.045806e-50 | -8.615850e-47 |
Msa1138110 | Msa1419210 | 0.811652 | 6.289074e-51 | -8.615850e-47 |
Msa1151070 | Msa1419210 | 0.850030 | 2.210076e-60 | -8.615850e-47 |
Msa1181680 | Msa1419210 | 0.801193 | 1.010775e-48 | -8.615850e-47 |
Msa1202110 | Msa1419210 | 0.800097 | 1.690987e-48 | -8.615850e-47 |
Msa1208830 | Msa1419210 | 0.880729 | 4.317618e-70 | -8.615850e-47 |
Msa1208840 | Msa1419210 | 0.819023 | 1.443669e-52 | -8.615850e-47 |
Msa1208910 | Msa1419210 | 0.904186 | 1.595540e-79 | -8.615850e-47 |
Msa1208920 | Msa1419210 | 0.844186 | 8.836267e-59 | -8.615850e-47 |
Msa1211610 | Msa1419210 | 0.805937 | 1.048855e-49 | -8.615850e-47 |
Msa1221520 | Msa1419210 | 0.804784 | 1.829617e-49 | -8.615850e-47 |
Msa0489370 | Msa1419210 | 0.834974 | 2.197590e-56 | -8.615850e-47 |
Msa0493710 | Msa1419210 | 0.809971 | 1.453110e-50 | -8.615850e-47 |
Msa0513670 | Msa1419210 | 0.838640 | 2.550255e-57 | -8.615850e-47 |
Msa0533510 | Msa1419210 | 0.819382 | 1.196128e-52 | -8.615850e-47 |
Msa0533520 | Msa1419210 | 0.822887 | 1.862614e-53 | -8.615850e-47 |
Msa0538440 | Msa1419210 | 0.820562 | 6.425532e-53 | -8.615850e-47 |
Msa0538450 | Msa1419210 | 0.824307 | 8.665993e-54 | -8.615850e-47 |
Msa0538520 | Msa1419210 | 0.814743 | 1.318487e-51 | -8.615850e-47 |
Msa0538530 | Msa1419210 | 0.819276 | 1.264636e-52 | -8.615850e-47 |
Msa0546760 | Msa1419210 | 0.817312 | 3.519281e-52 | -8.615850e-47 |
Msa0565120 | Msa1419210 | 0.827786 | 1.290657e-54 | -8.615850e-47 |
Msa0577960 | Msa1419210 | -0.815044 | 1.131110e-51 | -8.615850e-47 |
Msa0580840 | Msa1419210 | 0.817003 | 4.130050e-52 | -8.615850e-47 |
Msa0589730 | Msa1419210 | 0.818368 | 2.033308e-52 | -8.615850e-47 |
Msa0589740 | Msa1419210 | 0.813170 | 2.931235e-51 | -8.615850e-47 |
Msa0594320 | Msa1419210 | 0.814905 | 1.213896e-51 | -8.615850e-47 |
Msa0594330 | Msa1419210 | 0.842604 | 2.336474e-58 | -8.615850e-47 |
Msa0597820 | Msa1419210 | 0.811029 | 8.589745e-51 | -8.615850e-47 |
Msa0859230 | Msa1419210 | 0.827874 | 1.229275e-54 | -8.615850e-47 |
Msa0865810 | Msa1419210 | 0.809249 | 2.077038e-50 | -8.615850e-47 |
Msa0865830 | Msa1419210 | 0.834418 | 3.032716e-56 | -8.615850e-47 |
Msa0868820 | Msa1419210 | 0.813680 | 2.263763e-51 | -8.615850e-47 |
Msa0868870 | Msa1419210 | 0.822397 | 2.420870e-53 | -8.615850e-47 |
Msa0874750 | Msa1419210 | 0.821391 | 4.140609e-53 | -8.615850e-47 |
Msa0896920 | Msa1419210 | 0.801868 | 7.350284e-49 | -8.615850e-47 |
Msa0902340 | Msa1419210 | 0.807492 | 4.922866e-50 | -8.615850e-47 |
Msa0910590 | Msa1419210 | 0.802197 | 6.289757e-49 | -8.615850e-47 |
Msa0932890 | Msa1419210 | 0.814760 | 1.307504e-51 | -8.615850e-47 |
Msa0932930 | Msa1419210 | 0.828732 | 7.631782e-55 | -8.615850e-47 |
Msa0933580 | Msa1419210 | 0.805130 | 1.548488e-49 | -8.615850e-47 |
Msa0933610 | Msa1419210 | 0.807191 | 5.702910e-50 | -8.615850e-47 |
Msa0948430 | Msa1419210 | 0.808740 | 2.669646e-50 | -8.615850e-47 |
Msa0970790 | Msa1419210 | 0.811063 | 8.441334e-51 | -8.615850e-47 |
Msa0976400 | Msa1419210 | 0.820962 | 5.197777e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419210 | MtrunA17_Chr4g0058311 | 96.602 | 206 | 7 | 0 | 1 | 206 | 1 | 206 | 2.66e-152 | 420 |
Msa1419210 | MtrunA17_Chr4g0058331 | 96.117 | 206 | 8 | 0 | 1 | 206 | 1 | 206 | 6.48e-151 | 417 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1419210 | AT5G50200.1 | 51.675 | 209 | 90 | 5 | 1 | 202 | 1 | 205 | 1.38e-65 | 201 |
Msa1419210 | AT5G50200.3 | 51.675 | 209 | 90 | 5 | 1 | 202 | 1 | 205 | 1.38e-65 | 201 |
Msa1419210 | AT5G50200.2 | 51.675 | 209 | 90 | 5 | 1 | 202 | 1 | 205 | 1.38e-65 | 201 |
Msa1419210 | AT4G24715.1 | 48.792 | 207 | 98 | 5 | 1 | 202 | 23 | 226 | 2.98e-62 | 193 |
Find 61 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGCATAACTTCAGCTTTA+TGG | 0.105787 | tig0024683:-42056 | None:intergenic |
TCATAATATCATTCCAATTT+TGG | 0.111809 | tig0024683:+41653 | Msa1419210:five_prime_UTR |
CATTGTCTTCAGTGCTTTCT+CGG | 0.283646 | tig0024683:+42378 | Msa1419210:CDS |
ATCTATGCAGTTATGTTATC+TGG | 0.287035 | tig0024683:+41962 | Msa1419210:intron |
CTTGAGAGAAAAGCCAAAAT+TGG | 0.287392 | tig0024683:-41666 | None:intergenic |
CTCAAATTCAATCACTGCTT+TGG | 0.355774 | tig0024683:-42451 | None:intergenic |
CGCATTTGATTCCAATGATA+AGG | 0.357587 | tig0024683:+42258 | Msa1419210:CDS |
TACTTACCTTGTCCATGCTT+AGG | 0.361592 | tig0024683:-41840 | None:intergenic |
ACTTACCTTGTCCATGCTTA+GGG | 0.362581 | tig0024683:-41839 | None:intergenic |
TTTGAGATCAATGCAATTAG+TGG | 0.365486 | tig0024683:+42328 | Msa1419210:CDS |
TCTTACCCGTGTTCGTGGTT+TGG | 0.369045 | tig0024683:-42294 | None:intergenic |
ATAAGCCACTTCCTTATCAT+TGG | 0.373409 | tig0024683:-42269 | None:intergenic |
TGTTCCTCAAGATTTATTCA+TGG | 0.375072 | tig0024683:-42559 | None:intergenic |
GAATCAACCACTCGAAGGTT+TGG | 0.410270 | tig0024683:-42195 | None:intergenic |
TGTTTAGCTGAAATTTGTTA+TGG | 0.421382 | tig0024683:+41768 | Msa1419210:CDS |
AATGATAAGGAAGTGGCTTA+TGG | 0.425454 | tig0024683:+42271 | Msa1419210:CDS |
GCTTTCTCGGTTGTGTCCCT+AGG | 0.446758 | tig0024683:+42391 | Msa1419210:CDS |
TAGGATGAGTCTGTTCCAGC+TGG | 0.461830 | tig0024683:-42028 | None:intergenic |
AAAGAAAAGTCAACTATGAA+AGG | 0.484761 | tig0024683:-41696 | None:intergenic |
GCTACTCTTACCCGTGTTCG+TGG | 0.490262 | tig0024683:-42299 | None:intergenic |
AGCTGAAATTTGTTATGGAA+AGG | 0.496497 | tig0024683:+41773 | Msa1419210:CDS |
GTCCCTAGAGAGTTCATCCT+CGG | 0.498694 | tig0024683:-42116 | None:intergenic |
CTTCTATATTGAAAAGAGGA+AGG | 0.500127 | tig0024683:+42420 | Msa1419210:CDS |
AGACCGAGGATGAACTCTCT+AGG | 0.513840 | tig0024683:+42113 | Msa1419210:CDS |
TAGGGGAAGCTGTGACATCA+AGG | 0.517766 | tig0024683:-41821 | None:intergenic |
TGATTCCAATGATAAGGAAG+TGG | 0.518875 | tig0024683:+42264 | Msa1419210:CDS |
AAGAAAAGTCAACTATGAAA+GGG | 0.520049 | tig0024683:-41695 | None:intergenic |
TGATTGAATTTGAGTGACAT+AGG | 0.520789 | tig0024683:+42460 | Msa1419210:exon |
TGTTCTTCTATATTGAAAAG+AGG | 0.526365 | tig0024683:+42416 | Msa1419210:CDS |
GTTGGAAGCATTGTAGGGCA+TGG | 0.526614 | tig0024683:-42164 | None:intergenic |
CAATATAGAAGAACACGCCT+AGG | 0.537687 | tig0024683:-42408 | None:intergenic |
CTACAATGCTTCCAACAAAA+CGG | 0.547064 | tig0024683:+42171 | Msa1419210:CDS |
CTAAACAAAACTTTCCCAGC+TGG | 0.548684 | tig0024683:+42013 | Msa1419210:CDS |
TAGACAAAATCAGTGGGACA+TGG | 0.555670 | tig0024683:+41987 | Msa1419210:CDS |
GACCGAGGATGAACTCTCTA+GGG | 0.561011 | tig0024683:+42114 | Msa1419210:CDS |
TTCTATATTGAAAAGAGGAA+GGG | 0.562873 | tig0024683:+42421 | Msa1419210:CDS |
CGAGAAAGCACTGAAGACAA+TGG | 0.583492 | tig0024683:-42377 | None:intergenic |
GTCACAGCTTCCCCTAAGCA+TGG | 0.584742 | tig0024683:+41828 | Msa1419210:CDS |
TATGGCCAAACCACGAACAC+GGG | 0.596066 | tig0024683:+42289 | Msa1419210:CDS |
TTATGGCCAAACCACGAACA+CGG | 0.597854 | tig0024683:+42288 | Msa1419210:CDS |
ATAACCATGAATAAATCTTG+AGG | 0.606768 | tig0024683:+42555 | Msa1419210:three_prime_UTR |
CTTACCTTGTCCATGCTTAG+GGG | 0.615805 | tig0024683:-41838 | None:intergenic |
AGACAAAATCAGTGGGACAT+GGG | 0.616176 | tig0024683:+41988 | Msa1419210:CDS |
AGGGGAAGCTGTGACATCAA+GGG | 0.633811 | tig0024683:-41820 | None:intergenic |
AATATAGAAGAACACGCCTA+GGG | 0.636139 | tig0024683:-42407 | None:intergenic |
GTAGGCACGTACAAAGTATG+TGG | 0.636608 | tig0024683:-42236 | None:intergenic |
CTGGAGTAGACAAAATCAGT+GGG | 0.640296 | tig0024683:+41981 | Msa1419210:CDS |
TATGGCAGCACACAAGCTTG+TGG | 0.642279 | tig0024683:+41725 | Msa1419210:exon |
AGGATGAGTCTGTTCCAGCT+GGG | 0.643710 | tig0024683:-42027 | None:intergenic |
TCTGGAGTAGACAAAATCAG+TGG | 0.645792 | tig0024683:+41980 | Msa1419210:CDS |
ATCATTGGAATCAAATGCGT+AGG | 0.647510 | tig0024683:-42254 | None:intergenic |
CCTCGGTCTTTCTCCAAGCG+CGG | 0.651070 | tig0024683:-42099 | None:intergenic |
GCGCAGAATCAACCACTCGA+AGG | 0.651463 | tig0024683:-42200 | None:intergenic |
GCTTCCCCTAAGCATGGACA+AGG | 0.668529 | tig0024683:+41834 | Msa1419210:CDS |
AAACGGTCCAAACCTTCGAG+TGG | 0.693663 | tig0024683:+42188 | Msa1419210:CDS |
AGCAGATATCAAGAGTCGCG+TGG | 0.697710 | tig0024683:-42354 | None:intergenic |
AGATATCAAGAGTCGCGTGG+CGG | 0.700580 | tig0024683:-42351 | None:intergenic |
CCGCGCTTGGAGAAAGACCG+AGG | 0.703551 | tig0024683:+42099 | Msa1419210:CDS |
CGTACAAAGTATGTGGCCTG+AGG | 0.703950 | tig0024683:-42229 | None:intergenic |
GAGTGACATAGGAAACCTCG+TGG | 0.728451 | tig0024683:+42471 | Msa1419210:three_prime_UTR |
AAAGCTGAAGTTATGCTACG+CGG | 0.775950 | tig0024683:+42060 | Msa1419210:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCATAATATCATTCCAATTT+TGG | + | tig0024683:41653-41672 | Msa1419210:five_prime_UTR | 20.0% |
!! | CAAAATTGAGTTTATATTGA+AGG | - | tig0024683:41933-41952 | None:intergenic | 20.0% |
!!! | TCATAATATCATTCCAATTT+TGG | + | tig0024683:41653-41672 | Msa1419210:five_prime_UTR | 20.0% |
!! | CAAAATTGAGTTTATATTGA+AGG | - | tig0024683:41933-41952 | None:intergenic | 20.0% |
! | AAGAAAAGTCAACTATGAAA+GGG | - | tig0024683:41698-41717 | None:intergenic | 25.0% |
! | AAAGAAAAGTCAACTATGAA+AGG | - | tig0024683:41699-41718 | None:intergenic | 25.0% |
!!! | TGTTTAGCTGAAATTTGTTA+TGG | + | tig0024683:41768-41787 | Msa1419210:CDS | 25.0% |
! | TAATTAAATACGCCAATACA+AGG | - | tig0024683:41882-41901 | None:intergenic | 25.0% |
! | TGTTCTTCTATATTGAAAAG+AGG | + | tig0024683:42416-42435 | Msa1419210:CDS | 25.0% |
! | TTCTATATTGAAAAGAGGAA+GGG | + | tig0024683:42421-42440 | Msa1419210:CDS | 25.0% |
! | ATAACCATGAATAAATCTTG+AGG | + | tig0024683:42555-42574 | Msa1419210:three_prime_UTR | 25.0% |
! | AAGAAAAGTCAACTATGAAA+GGG | - | tig0024683:41698-41717 | None:intergenic | 25.0% |
! | AAAGAAAAGTCAACTATGAA+AGG | - | tig0024683:41699-41718 | None:intergenic | 25.0% |
!!! | TGTTTAGCTGAAATTTGTTA+TGG | + | tig0024683:41768-41787 | Msa1419210:CDS | 25.0% |
! | TAATTAAATACGCCAATACA+AGG | - | tig0024683:41882-41901 | None:intergenic | 25.0% |
! | TGTTCTTCTATATTGAAAAG+AGG | + | tig0024683:42416-42435 | Msa1419210:CDS | 25.0% |
! | TTCTATATTGAAAAGAGGAA+GGG | + | tig0024683:42421-42440 | Msa1419210:CDS | 25.0% |
! | ATAACCATGAATAAATCTTG+AGG | + | tig0024683:42555-42574 | Msa1419210:three_prime_UTR | 25.0% |
!!! | TGACTTTTCTTTTAGAGCTA+TGG | + | tig0024683:41707-41726 | Msa1419210:exon | 30.0% |
!! | AGCTGAAATTTGTTATGGAA+AGG | + | tig0024683:41773-41792 | Msa1419210:CDS | 30.0% |
! | TAAGATTTTGCACCTTGTAT+TGG | + | tig0024683:41867-41886 | Msa1419210:intron | 30.0% |
ATCTATGCAGTTATGTTATC+TGG | + | tig0024683:41962-41981 | Msa1419210:intron | 30.0% | |
! | TTTGAGATCAATGCAATTAG+TGG | + | tig0024683:42328-42347 | Msa1419210:CDS | 30.0% |
CTTCTATATTGAAAAGAGGA+AGG | + | tig0024683:42420-42439 | Msa1419210:CDS | 30.0% | |
TGATTGAATTTGAGTGACAT+AGG | + | tig0024683:42460-42479 | Msa1419210:exon | 30.0% | |
TGTTCCTCAAGATTTATTCA+TGG | - | tig0024683:42562-42581 | None:intergenic | 30.0% | |
!!! | TGACTTTTCTTTTAGAGCTA+TGG | + | tig0024683:41707-41726 | Msa1419210:exon | 30.0% |
!! | AGCTGAAATTTGTTATGGAA+AGG | + | tig0024683:41773-41792 | Msa1419210:CDS | 30.0% |
! | TAAGATTTTGCACCTTGTAT+TGG | + | tig0024683:41867-41886 | Msa1419210:intron | 30.0% |
ATCTATGCAGTTATGTTATC+TGG | + | tig0024683:41962-41981 | Msa1419210:intron | 30.0% | |
! | TTTGAGATCAATGCAATTAG+TGG | + | tig0024683:42328-42347 | Msa1419210:CDS | 30.0% |
CTTCTATATTGAAAAGAGGA+AGG | + | tig0024683:42420-42439 | Msa1419210:CDS | 30.0% | |
TGATTGAATTTGAGTGACAT+AGG | + | tig0024683:42460-42479 | Msa1419210:exon | 30.0% | |
TGTTCCTCAAGATTTATTCA+TGG | - | tig0024683:42562-42581 | None:intergenic | 30.0% | |
CTTGAGAGAAAAGCCAAAAT+TGG | - | tig0024683:41669-41688 | None:intergenic | 35.0% | |
!!! | CTTCAGCTTTATGGTTTTGT+AGG | - | tig0024683:42050-42069 | None:intergenic | 35.0% |
GTAGCATAACTTCAGCTTTA+TGG | - | tig0024683:42059-42078 | None:intergenic | 35.0% | |
!!! | GTTTTGTTGGAAGCATTGTA+GGG | - | tig0024683:42172-42191 | None:intergenic | 35.0% |
CTACAATGCTTCCAACAAAA+CGG | + | tig0024683:42171-42190 | Msa1419210:CDS | 35.0% | |
ATCATTGGAATCAAATGCGT+AGG | - | tig0024683:42257-42276 | None:intergenic | 35.0% | |
CGCATTTGATTCCAATGATA+AGG | + | tig0024683:42258-42277 | Msa1419210:CDS | 35.0% | |
TGATTCCAATGATAAGGAAG+TGG | + | tig0024683:42264-42283 | Msa1419210:CDS | 35.0% | |
ATAAGCCACTTCCTTATCAT+TGG | - | tig0024683:42272-42291 | None:intergenic | 35.0% | |
AATGATAAGGAAGTGGCTTA+TGG | + | tig0024683:42271-42290 | Msa1419210:CDS | 35.0% | |
AATATAGAAGAACACGCCTA+GGG | - | tig0024683:42410-42429 | None:intergenic | 35.0% | |
CTCAAATTCAATCACTGCTT+TGG | - | tig0024683:42454-42473 | None:intergenic | 35.0% | |
!! | TATTTTTGTTACAAGCCACG+AGG | - | tig0024683:42489-42508 | None:intergenic | 35.0% |
CTTGAGAGAAAAGCCAAAAT+TGG | - | tig0024683:41669-41688 | None:intergenic | 35.0% | |
!!! | CTTCAGCTTTATGGTTTTGT+AGG | - | tig0024683:42050-42069 | None:intergenic | 35.0% |
GTAGCATAACTTCAGCTTTA+TGG | - | tig0024683:42059-42078 | None:intergenic | 35.0% | |
!!! | GTTTTGTTGGAAGCATTGTA+GGG | - | tig0024683:42172-42191 | None:intergenic | 35.0% |
CTACAATGCTTCCAACAAAA+CGG | + | tig0024683:42171-42190 | Msa1419210:CDS | 35.0% | |
ATCATTGGAATCAAATGCGT+AGG | - | tig0024683:42257-42276 | None:intergenic | 35.0% | |
CGCATTTGATTCCAATGATA+AGG | + | tig0024683:42258-42277 | Msa1419210:CDS | 35.0% | |
TGATTCCAATGATAAGGAAG+TGG | + | tig0024683:42264-42283 | Msa1419210:CDS | 35.0% | |
ATAAGCCACTTCCTTATCAT+TGG | - | tig0024683:42272-42291 | None:intergenic | 35.0% | |
AATGATAAGGAAGTGGCTTA+TGG | + | tig0024683:42271-42290 | Msa1419210:CDS | 35.0% | |
AATATAGAAGAACACGCCTA+GGG | - | tig0024683:42410-42429 | None:intergenic | 35.0% | |
CTCAAATTCAATCACTGCTT+TGG | - | tig0024683:42454-42473 | None:intergenic | 35.0% | |
!! | TATTTTTGTTACAAGCCACG+AGG | - | tig0024683:42489-42508 | None:intergenic | 35.0% |
ACTTACCTTGTCCATGCTTA+GGG | - | tig0024683:41842-41861 | None:intergenic | 40.0% | |
TACTTACCTTGTCCATGCTT+AGG | - | tig0024683:41843-41862 | None:intergenic | 40.0% | |
! | TCTGGAGTAGACAAAATCAG+TGG | + | tig0024683:41980-41999 | Msa1419210:CDS | 40.0% |
CTGGAGTAGACAAAATCAGT+GGG | + | tig0024683:41981-42000 | Msa1419210:CDS | 40.0% | |
TAGACAAAATCAGTGGGACA+TGG | + | tig0024683:41987-42006 | Msa1419210:CDS | 40.0% | |
AGACAAAATCAGTGGGACAT+GGG | + | tig0024683:41988-42007 | Msa1419210:CDS | 40.0% | |
CTAAACAAAACTTTCCCAGC+TGG | + | tig0024683:42013-42032 | Msa1419210:CDS | 40.0% | |
AAAGCTGAAGTTATGCTACG+CGG | + | tig0024683:42060-42079 | Msa1419210:CDS | 40.0% | |
! | GCATGGCTAACATTTTGTGT+TGG | - | tig0024683:42150-42169 | None:intergenic | 40.0% |
!!! | CGTTTTGTTGGAAGCATTGT+AGG | - | tig0024683:42173-42192 | None:intergenic | 40.0% |
CATTGTCTTCAGTGCTTTCT+CGG | + | tig0024683:42378-42397 | Msa1419210:CDS | 40.0% | |
CAATATAGAAGAACACGCCT+AGG | - | tig0024683:42411-42430 | None:intergenic | 40.0% | |
ACTTACCTTGTCCATGCTTA+GGG | - | tig0024683:41842-41861 | None:intergenic | 40.0% | |
TACTTACCTTGTCCATGCTT+AGG | - | tig0024683:41843-41862 | None:intergenic | 40.0% | |
! | TCTGGAGTAGACAAAATCAG+TGG | + | tig0024683:41980-41999 | Msa1419210:CDS | 40.0% |
CTGGAGTAGACAAAATCAGT+GGG | + | tig0024683:41981-42000 | Msa1419210:CDS | 40.0% | |
TAGACAAAATCAGTGGGACA+TGG | + | tig0024683:41987-42006 | Msa1419210:CDS | 40.0% | |
AGACAAAATCAGTGGGACAT+GGG | + | tig0024683:41988-42007 | Msa1419210:CDS | 40.0% | |
CTAAACAAAACTTTCCCAGC+TGG | + | tig0024683:42013-42032 | Msa1419210:CDS | 40.0% | |
AAAGCTGAAGTTATGCTACG+CGG | + | tig0024683:42060-42079 | Msa1419210:CDS | 40.0% | |
! | GCATGGCTAACATTTTGTGT+TGG | - | tig0024683:42150-42169 | None:intergenic | 40.0% |
!!! | CGTTTTGTTGGAAGCATTGT+AGG | - | tig0024683:42173-42192 | None:intergenic | 40.0% |
CATTGTCTTCAGTGCTTTCT+CGG | + | tig0024683:42378-42397 | Msa1419210:CDS | 40.0% | |
CAATATAGAAGAACACGCCT+AGG | - | tig0024683:42411-42430 | None:intergenic | 40.0% | |
CTTACCTTGTCCATGCTTAG+GGG | - | tig0024683:41841-41860 | None:intergenic | 45.0% | |
! | GAAGGTTTGGACCGTTTTGT+TGG | - | tig0024683:42185-42204 | None:intergenic | 45.0% |
GAATCAACCACTCGAAGGTT+TGG | - | tig0024683:42198-42217 | None:intergenic | 45.0% | |
GTAGGCACGTACAAAGTATG+TGG | - | tig0024683:42239-42258 | None:intergenic | 45.0% | |
TTATGGCCAAACCACGAACA+CGG | + | tig0024683:42288-42307 | Msa1419210:CDS | 45.0% | |
!! | CGAGAAAGCACTGAAGACAA+TGG | - | tig0024683:42380-42399 | None:intergenic | 45.0% |
CTTACCTTGTCCATGCTTAG+GGG | - | tig0024683:41841-41860 | None:intergenic | 45.0% | |
! | GAAGGTTTGGACCGTTTTGT+TGG | - | tig0024683:42185-42204 | None:intergenic | 45.0% |
GAATCAACCACTCGAAGGTT+TGG | - | tig0024683:42198-42217 | None:intergenic | 45.0% | |
GTAGGCACGTACAAAGTATG+TGG | - | tig0024683:42239-42258 | None:intergenic | 45.0% | |
TTATGGCCAAACCACGAACA+CGG | + | tig0024683:42288-42307 | Msa1419210:CDS | 45.0% | |
!! | CGAGAAAGCACTGAAGACAA+TGG | - | tig0024683:42380-42399 | None:intergenic | 45.0% |
TATGGCAGCACACAAGCTTG+TGG | + | tig0024683:41725-41744 | Msa1419210:exon | 50.0% | |
AGGGGAAGCTGTGACATCAA+GGG | - | tig0024683:41823-41842 | None:intergenic | 50.0% | |
TAGGGGAAGCTGTGACATCA+AGG | - | tig0024683:41824-41843 | None:intergenic | 50.0% | |
AGGATGAGTCTGTTCCAGCT+GGG | - | tig0024683:42030-42049 | None:intergenic | 50.0% | |
TAGGATGAGTCTGTTCCAGC+TGG | - | tig0024683:42031-42050 | None:intergenic | 50.0% | |
!!! | AGCGCGGTCTTTTTGGCTTA+TGG | - | tig0024683:42086-42105 | None:intergenic | 50.0% |
TAAGCCAAAAAGACCGCGCT+TGG | + | tig0024683:42086-42105 | Msa1419210:CDS | 50.0% | |
! | TTCTCCAAGCGCGGTCTTTT+TGG | - | tig0024683:42093-42112 | None:intergenic | 50.0% |
AGACCGAGGATGAACTCTCT+AGG | + | tig0024683:42113-42132 | Msa1419210:CDS | 50.0% | |
GACCGAGGATGAACTCTCTA+GGG | + | tig0024683:42114-42133 | Msa1419210:CDS | 50.0% | |
GTCCCTAGAGAGTTCATCCT+CGG | - | tig0024683:42119-42138 | None:intergenic | 50.0% | |
!! | GTTGGAAGCATTGTAGGGCA+TGG | - | tig0024683:42167-42186 | None:intergenic | 50.0% |
AAACGGTCCAAACCTTCGAG+TGG | + | tig0024683:42188-42207 | Msa1419210:CDS | 50.0% | |
CGTACAAAGTATGTGGCCTG+AGG | - | tig0024683:42232-42251 | None:intergenic | 50.0% | |
TATGGCCAAACCACGAACAC+GGG | + | tig0024683:42289-42308 | Msa1419210:CDS | 50.0% | |
TCTTACCCGTGTTCGTGGTT+TGG | - | tig0024683:42297-42316 | None:intergenic | 50.0% | |
AGATATCAAGAGTCGCGTGG+CGG | - | tig0024683:42354-42373 | None:intergenic | 50.0% | |
AGCAGATATCAAGAGTCGCG+TGG | - | tig0024683:42357-42376 | None:intergenic | 50.0% | |
GAGTGACATAGGAAACCTCG+TGG | + | tig0024683:42471-42490 | Msa1419210:three_prime_UTR | 50.0% | |
TATGGCAGCACACAAGCTTG+TGG | + | tig0024683:41725-41744 | Msa1419210:exon | 50.0% | |
AGGGGAAGCTGTGACATCAA+GGG | - | tig0024683:41823-41842 | None:intergenic | 50.0% | |
TAGGGGAAGCTGTGACATCA+AGG | - | tig0024683:41824-41843 | None:intergenic | 50.0% | |
AGGATGAGTCTGTTCCAGCT+GGG | - | tig0024683:42030-42049 | None:intergenic | 50.0% | |
TAGGATGAGTCTGTTCCAGC+TGG | - | tig0024683:42031-42050 | None:intergenic | 50.0% | |
!!! | AGCGCGGTCTTTTTGGCTTA+TGG | - | tig0024683:42086-42105 | None:intergenic | 50.0% |
TAAGCCAAAAAGACCGCGCT+TGG | + | tig0024683:42086-42105 | Msa1419210:CDS | 50.0% | |
! | TTCTCCAAGCGCGGTCTTTT+TGG | - | tig0024683:42093-42112 | None:intergenic | 50.0% |
AGACCGAGGATGAACTCTCT+AGG | + | tig0024683:42113-42132 | Msa1419210:CDS | 50.0% | |
GACCGAGGATGAACTCTCTA+GGG | + | tig0024683:42114-42133 | Msa1419210:CDS | 50.0% | |
GTCCCTAGAGAGTTCATCCT+CGG | - | tig0024683:42119-42138 | None:intergenic | 50.0% | |
!! | GTTGGAAGCATTGTAGGGCA+TGG | - | tig0024683:42167-42186 | None:intergenic | 50.0% |
AAACGGTCCAAACCTTCGAG+TGG | + | tig0024683:42188-42207 | Msa1419210:CDS | 50.0% | |
CGTACAAAGTATGTGGCCTG+AGG | - | tig0024683:42232-42251 | None:intergenic | 50.0% | |
TATGGCCAAACCACGAACAC+GGG | + | tig0024683:42289-42308 | Msa1419210:CDS | 50.0% | |
TCTTACCCGTGTTCGTGGTT+TGG | - | tig0024683:42297-42316 | None:intergenic | 50.0% | |
AGATATCAAGAGTCGCGTGG+CGG | - | tig0024683:42354-42373 | None:intergenic | 50.0% | |
AGCAGATATCAAGAGTCGCG+TGG | - | tig0024683:42357-42376 | None:intergenic | 50.0% | |
GAGTGACATAGGAAACCTCG+TGG | + | tig0024683:42471-42490 | Msa1419210:three_prime_UTR | 50.0% | |
GTCACAGCTTCCCCTAAGCA+TGG | + | tig0024683:41828-41847 | Msa1419210:CDS | 55.0% | |
GCTTCCCCTAAGCATGGACA+AGG | + | tig0024683:41834-41853 | Msa1419210:CDS | 55.0% | |
GCGCAGAATCAACCACTCGA+AGG | - | tig0024683:42203-42222 | None:intergenic | 55.0% | |
GCTACTCTTACCCGTGTTCG+TGG | - | tig0024683:42302-42321 | None:intergenic | 55.0% | |
GCTTTCTCGGTTGTGTCCCT+AGG | + | tig0024683:42391-42410 | Msa1419210:CDS | 55.0% | |
GTCACAGCTTCCCCTAAGCA+TGG | + | tig0024683:41828-41847 | Msa1419210:CDS | 55.0% | |
GCTTCCCCTAAGCATGGACA+AGG | + | tig0024683:41834-41853 | Msa1419210:CDS | 55.0% | |
GCGCAGAATCAACCACTCGA+AGG | - | tig0024683:42203-42222 | None:intergenic | 55.0% | |
GCTACTCTTACCCGTGTTCG+TGG | - | tig0024683:42302-42321 | None:intergenic | 55.0% | |
GCTTTCTCGGTTGTGTCCCT+AGG | + | tig0024683:42391-42410 | Msa1419210:CDS | 55.0% | |
CCTCGGTCTTTCTCCAAGCG+CGG | - | tig0024683:42102-42121 | None:intergenic | 60.0% | |
CCTCGGTCTTTCTCCAAGCG+CGG | - | tig0024683:42102-42121 | None:intergenic | 60.0% | |
CCGCGCTTGGAGAAAGACCG+AGG | + | tig0024683:42099-42118 | Msa1419210:CDS | 65.0% | |
GATTCTGCGCGACGTGCCTC+AGG | + | tig0024683:42213-42232 | Msa1419210:CDS | 65.0% | |
CCGCGCTTGGAGAAAGACCG+AGG | + | tig0024683:42099-42118 | Msa1419210:CDS | 65.0% | |
GATTCTGCGCGACGTGCCTC+AGG | + | tig0024683:42213-42232 | Msa1419210:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024683 | gene | 41644 | 42601 | 41644 | ID=Msa1419210;Name=Msa1419210 |
tig0024683 | mRNA | 41644 | 42601 | 41644 | ID=Msa1419210-mRNA-1;Parent=Msa1419210;Name=Msa1419210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|1|2|139|206 |
tig0024683 | exon | 41644 | 41855 | 41644 | ID=Msa1419210-mRNA-1:exon:803;Parent=Msa1419210-mRNA-1 |
tig0024683 | exon | 41972 | 42601 | 41972 | ID=Msa1419210-mRNA-1:exon:804;Parent=Msa1419210-mRNA-1 |
tig0024683 | five_prime_UTR | 41644 | 41725 | 41644 | ID=Msa1419210-mRNA-1:five_prime_utr;Parent=Msa1419210-mRNA-1 |
tig0024683 | CDS | 41726 | 41855 | 41726 | ID=Msa1419210-mRNA-1:cds;Parent=Msa1419210-mRNA-1 |
tig0024683 | CDS | 41972 | 42462 | 41972 | ID=Msa1419210-mRNA-1:cds;Parent=Msa1419210-mRNA-1 |
tig0024683 | three_prime_UTR | 42463 | 42601 | 42463 | ID=Msa1419210-mRNA-1:three_prime_utr;Parent=Msa1419210-mRNA-1 |
Gene Sequence |
Protein sequence |