AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509530 MtrunA17_Chr3g0114521 99.229 389 3 0 1 389 1 389 0.0 792
Msa0509530 MtrunA17_Chr2g0315761 55.556 342 151 1 48 389 55 395 3.03e-137 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509530 AT2G40490.1 77.926 376 80 2 15 389 21 394 0.0 609
Msa0509530 AT3G14930.2 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0509530 AT3G14930.1 53.026 347 162 1 43 389 54 399 1.64e-138 401
Msa0509530 AT3G14930.3 54.180 323 147 1 67 389 1 322 1.17e-129 376

Find 117 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTCTTACACCACTTTC+TGG 0.157805 3_4:-57950296 Msa0509530:CDS
TTTCAGACAAACGCAGATTT+TGG 0.175740 3_4:+57951637 None:intergenic
ATTCCATTTGACATTGTAAA+AGG 0.206118 3_4:-57950266 Msa0509530:CDS
GTTACGGTACGGGCGAAGTA+TGG 0.216344 3_4:+57951708 None:intergenic
TTGCAGTTAATATAAGATTT+TGG 0.231158 3_4:-57946965 Msa0509530:three_prime_UTR
AATGGATTTGAATGGGTAAA+AGG 0.250908 3_4:+57951525 None:intergenic
TCAATTATTTGCTTCAAGTA+TGG 0.290572 3_4:+57947384 None:intergenic
ACTTGGCCTGCGGAGTGAAC+TGG 0.306505 3_4:+57950221 None:intergenic
AAATGTCGTTCTATATTTAG+AGG 0.312910 3_4:+57946846 None:intergenic
TCCATTCAATGTTCTCTTCC+AGG 0.315235 3_4:-57951508 Msa0509530:intron
CTTGGATTGGACGGTTGATA+TGG 0.339881 3_4:-57947259 Msa0509530:CDS
AACTTAGTATTTGATTCCTT+TGG 0.358951 3_4:+57947032 None:intergenic
GTTGATCCTGGTGTTCTGTT+TGG 0.376386 3_4:-57947189 Msa0509530:CDS
TTTCTCTAAAATAAAGAGAT+TGG 0.380766 3_4:-57948186 Msa0509530:CDS
ATCCTCTATGCAAGTGGATC+AGG 0.396912 3_4:-57947327 Msa0509530:CDS
CGATGCCGTGACCAAGGTTC+AGG 0.397386 3_4:+57947100 None:intergenic
TTGATATGGCTGACGGTAGA+AGG 0.402561 3_4:-57947245 Msa0509530:CDS
GAACATTGAATGGATTTGAA+TGG 0.412640 3_4:+57951517 None:intergenic
TAGAGGATAAGAGGGAGTTC+TGG 0.412953 3_4:+57947342 None:intergenic
GGCTGACGGTAGAAGGAGAT+TGG 0.418136 3_4:-57947238 Msa0509530:CDS
ATGGACTACTAGATCATGAT+TGG 0.420864 3_4:-57951753 None:intergenic
CCACTTGCATAGAGGATAAG+AGG 0.422510 3_4:+57947333 None:intergenic
CTGTACAGATATTCGATTCA+TGG 0.424244 3_4:-57947449 Msa0509530:CDS
AACATTGAATGGATTTGAAT+GGG 0.425887 3_4:+57951518 None:intergenic
ACATACGACGCCAGGGTAAA+CGG 0.433300 3_4:+57948233 None:intergenic
GATAATAAATCTGCAGTCCT+TGG 0.434879 3_4:-57948269 Msa0509530:CDS
GCGAAGTATGGGAAGGATAA+GGG 0.435189 3_4:+57951720 None:intergenic
TTACCTTGGATAGCTACATT+TGG 0.446082 3_4:+57947213 None:intergenic
GAGAGTTATATTACCCCATC+AGG 0.452559 3_4:+57950449 None:intergenic
GCTTGTCTCATAAGCCAAAC+AGG 0.452792 3_4:+57951223 None:intergenic
GGCGAAGTATGGGAAGGATA+AGG 0.453863 3_4:+57951719 None:intergenic
ATGTCGAAAGACCTCCTGTT+TGG 0.460725 3_4:-57951237 Msa0509530:CDS
CTTGGCCTGCGGAGTGAACT+GGG 0.461901 3_4:+57950222 None:intergenic
CTTGCGCTCCATTGTCAGCT+TGG 0.463609 3_4:+57947472 None:intergenic
CAGATCTTTCCCGGAATGAC+GGG 0.470670 3_4:+57950525 None:intergenic
AACGTATGGAACTGATTCCT+CGG 0.471977 3_4:+57950175 None:intergenic
CTGGCGTCGTATGTGGTTGA+AGG 0.472993 3_4:-57948224 Msa0509530:CDS
GTTTACCCTGGCGTCGTATG+TGG 0.473968 3_4:-57948231 Msa0509530:CDS
GTTGAGTTTCAGCTATGTTA+CGG 0.483371 3_4:+57951692 None:intergenic
CGAACTGCATTGAGCAAAAG+AGG 0.487266 3_4:+57951268 None:intergenic
CACGATACCGTGAGAAAGGC+TGG 0.489317 3_4:-57947138 Msa0509530:CDS
AAATGTGCTACATTCTCCTC+AGG 0.494178 3_4:+57947066 None:intergenic
CTTGGTCACGGCATCGTAGT+AGG 0.496571 3_4:-57947093 Msa0509530:CDS
TTACGGTACGGGCGAAGTAT+GGG 0.496606 3_4:+57951709 None:intergenic
GGAATATTCATTCCAGAAAG+TGG 0.500259 3_4:+57950284 None:intergenic
GTTTGGCTTATGAGACAAGC+TGG 0.502036 3_4:-57951220 Msa0509530:CDS
ACCTGGAAGAGAACATTGAA+TGG 0.506655 3_4:+57951507 None:intergenic
CTTCAACCACATACGACGCC+AGG 0.512222 3_4:+57948225 None:intergenic
CGGTGTGGATGTTGTAAGCT+TGG 0.514049 3_4:-57947277 Msa0509530:CDS
AATTTCATTGCAACCGTGGA+AGG 0.514515 3_4:-57950480 Msa0509530:CDS
CTGAATCGTTCAAAATCCAC+TGG 0.515548 3_4:+57947411 None:intergenic
TGTGGGTGCTCCGTTTACCC+TGG 0.516470 3_4:-57948243 Msa0509530:CDS
CCCTCTACCAGCCTTTCTCA+CGG 0.518645 3_4:+57947131 None:intergenic
GCAAAAGTTTACAACATCAA+TGG 0.520601 3_4:-57947511 Msa0509530:CDS
ATTTGACATTGTAAAAGGCA+AGG 0.524512 3_4:-57950261 Msa0509530:CDS
GCTGACGGTAGAAGGAGATT+GGG 0.526942 3_4:-57947237 Msa0509530:CDS
GATACACGATACCGTGAGAA+AGG 0.528071 3_4:-57947142 Msa0509530:CDS
ACCGTGAGAAAGGCTGGTAG+AGG 0.529078 3_4:-57947132 Msa0509530:CDS
TGGATGTTGTAAGCTTGGAT+TGG 0.533084 3_4:-57947272 Msa0509530:CDS
ATCCAAGGTAATGTTGATCC+TGG 0.536465 3_4:-57947201 Msa0509530:CDS
GTTTCAGCTATGTTACGGTA+CGG 0.536484 3_4:+57951697 None:intergenic
ATGGATTTGAATGGGTAAAA+GGG 0.537828 3_4:+57951526 None:intergenic
TCAGATCTTTCCCGGAATGA+CGG 0.538694 3_4:+57950524 None:intergenic
GTTATATTACCCCATCAGGC+TGG 0.542394 3_4:+57950453 None:intergenic
ATCTGAAAACGTTGATCTTG+TGG 0.544982 3_4:-57950507 Msa0509530:CDS
CACCAGGATCAACATTACCT+TGG 0.550632 3_4:+57947199 None:intergenic
TGGACTACTAGATCATGATT+GGG 0.552999 3_4:-57951752 None:intergenic
TTTCAGCTATGTTACGGTAC+GGG 0.555929 3_4:+57951698 None:intergenic
TGTACAGATATTCGATTCAT+GGG 0.557652 3_4:-57947448 Msa0509530:CDS
TTTGACCCAGTTCACTCCGC+AGG 0.557974 3_4:-57950227 Msa0509530:CDS
CACGGTATCGTGTATCCTAT+CGG 0.559155 3_4:+57947149 None:intergenic
CCTCTTATCCTCTATGCAAG+TGG 0.559600 3_4:-57947333 Msa0509530:CDS
CTTGAGAGAATAGCATTGAC+CGG 0.561094 3_4:-57947297 Msa0509530:CDS
GATAGTGCTTCACCAACGTA+TGG 0.570324 3_4:+57950161 None:intergenic
CTCCTGATCCACTTGCATAG+AGG 0.573987 3_4:+57947325 None:intergenic
GCTAACTACACCGCAAAACA+TGG 0.575089 3_4:+57951594 None:intergenic
TTTGACATTGTAAAAGGCAA+GGG 0.580301 3_4:-57950260 Msa0509530:CDS
GTGAACTGGGTCAAATATGA+CGG 0.581289 3_4:+57950235 None:intergenic
CACTTGATCAACTTGGCCTG+CGG 0.582378 3_4:+57950211 None:intergenic
TTTGAATGGGTAAAAGGGTG+TGG 0.582685 3_4:+57951531 None:intergenic
ACGTATGGAACTGATTCCTC+GGG 0.583383 3_4:+57950176 None:intergenic
CTCTATGCAAGTGGATCAGG+AGG 0.584281 3_4:-57947324 Msa0509530:CDS
GGACCAAATGTAGCTATCCA+AGG 0.588652 3_4:-57947216 Msa0509530:CDS
TGTTGTAAGCTTGGATTGGA+CGG 0.589620 3_4:-57947268 Msa0509530:CDS
ACTCCCTCACTTGATCAACT+TGG 0.589624 3_4:+57950204 None:intergenic
ATTGGCATTCTCTGAACCAA+AGG 0.592895 3_4:-57948168 Msa0509530:intron
TGAACTGGGTCAAATATGAC+GGG 0.600113 3_4:+57950236 None:intergenic
CACTTGCATAGAGGATAAGA+GGG 0.600254 3_4:+57947334 None:intergenic
GGGAAACATATCCTGAACCT+TGG 0.602324 3_4:-57947111 Msa0509530:CDS
CGAAAGAGCTGATTACCGAT+AGG 0.604713 3_4:-57947164 Msa0509530:CDS
TTTGGCTTATGAGACAAGCT+GGG 0.604715 3_4:-57951219 Msa0509530:CDS
TTCGATCCAAACAGAACACC+AGG 0.613403 3_4:+57947183 None:intergenic
ACAAGCTGGGAGGTACATGA+AGG 0.615658 3_4:-57951206 Msa0509530:intron
GGCAACAGAGCTTAGTCCAG+TGG 0.616272 3_4:-57947427 Msa0509530:CDS
CAGGCCAAGTTGATCAAGTG+AGG 0.617997 3_4:-57950208 Msa0509530:CDS
CTACTACGATGCCGTGACCA+AGG 0.620641 3_4:+57947094 None:intergenic
GGATAAGAGGGAGTTCTGGA+TGG 0.622692 3_4:+57947346 None:intergenic
TCAGGCTGGAAAACCTTCCA+CGG 0.624106 3_4:+57950467 None:intergenic
ATACAATACCAAGCTGACAA+TGG 0.630738 3_4:-57947480 Msa0509530:CDS
TTGAAATTTCATTGCAACCG+TGG 0.633557 3_4:-57950484 Msa0509530:CDS
TTCAACCACATACGACGCCA+GGG 0.634894 3_4:+57948226 None:intergenic
GCGTCGTATGTGGTTGAAGG+CGG 0.638298 3_4:-57948221 Msa0509530:CDS
ATTGAGCAAAAGAGGTTCTG+TGG 0.641274 3_4:+57951276 None:intergenic
CCGTGAGAAAGGCTGGTAGA+GGG 0.642675 3_4:-57947131 Msa0509530:CDS
ATGGGTAAAAGGGTGTGGTG+TGG 0.645380 3_4:+57951536 None:intergenic
AGGCCAAGTTGATCAAGTGA+GGG 0.645695 3_4:-57950207 Msa0509530:CDS
AGTGAGGGAGTTTATTCCCG+AGG 0.654388 3_4:-57950192 Msa0509530:CDS
CATATCCTGAACCTTGGTCA+CGG 0.656692 3_4:-57947105 Msa0509530:CDS
TGGACGGTTGATATGGCTGA+CGG 0.660456 3_4:-57947252 Msa0509530:CDS
GGCTTATGAGACAAGCTGGG+AGG 0.683527 3_4:-57951216 Msa0509530:CDS
GAGAATAGCATTGACCGGTG+TGG 0.684858 3_4:-57947292 Msa0509530:CDS
ACGGAGCACCCACAAAACCA+AGG 0.689374 3_4:+57948252 None:intergenic
GGTACGGGCGAAGTATGGGA+AGG 0.692117 3_4:+57951713 None:intergenic
GAGGAATCAGTTCCATACGT+TGG 0.710365 3_4:-57950173 Msa0509530:CDS
CATCGTAGTAGGTACTCCTG+AGG 0.717142 3_4:-57947082 Msa0509530:CDS
CAAGCTTACAACATCCACAC+CGG 0.721621 3_4:+57947278 None:intergenic
TGTCTCATAAGCCAAACAGG+AGG 0.741224 3_4:+57951226 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTAAAATTTAATC+TGG - chr3_4:57947165-57947184 Msa0509530:CDS 10.0%
!!! TTTTGTTCTATTTATTTTTT+TGG - chr3_4:57949787-57949806 Msa0509530:intron 10.0%
!! AATAAAATTGATTATTTCAA+GGG + chr3_4:57950620-57950639 None:intergenic 10.0%
!! AAATAAAATTGATTATTTCA+AGG + chr3_4:57950621-57950640 None:intergenic 10.0%
!!! TTTTATTTGTTCTTATCTTT+TGG - chr3_4:57949560-57949579 Msa0509530:intron 15.0%
!! GAATTATAAAACAAACAAAA+AGG + chr3_4:57949847-57949866 None:intergenic 15.0%
!!! CTTTATTAAATTGAAAGTAT+TGG - chr3_4:57950277-57950296 Msa0509530:CDS 15.0%
!! ATAAAATTGATTATTTCAAG+GGG + chr3_4:57950619-57950638 None:intergenic 15.0%
!! TAAATGTTAATGATAGAAGA+TGG + chr3_4:57947121-57947140 None:intergenic 20.0%
!! AATAAGGTTTACACAATAAT+GGG + chr3_4:57947191-57947210 None:intergenic 20.0%
!! AAATAAGGTTTACACAATAA+TGG + chr3_4:57947192-57947211 None:intergenic 20.0%
!!! TGTAAACCTTATTTAATGAT+GGG - chr3_4:57947198-57947217 Msa0509530:CDS 20.0%
!!! CAAAAGTATAACAAACAATT+AGG + chr3_4:57947410-57947429 None:intergenic 20.0%
!! TATTAAAAAGAAATTGCGAT+TGG - chr3_4:57947715-57947734 Msa0509530:intron 20.0%
!!! ATTTAGAACAAGATAAGTAT+AGG + chr3_4:57947924-57947943 None:intergenic 20.0%
!! CTATAAAATAAAAAGAAGTG+CGG + chr3_4:57948506-57948525 None:intergenic 20.0%
!! AGATTTATGAATCATCAATT+TGG - chr3_4:57948742-57948761 Msa0509530:intron 20.0%
!! GATTTGTAAATTCTAATCAA+CGG + chr3_4:57948886-57948905 None:intergenic 20.0%
!!! TCTGTACTTTTTATTTAAAG+TGG + chr3_4:57949136-57949155 None:intergenic 20.0%
!! TGTCAAATAATAAAAAAAGC+AGG - chr3_4:57949718-57949737 Msa0509530:intron 20.0%
!!! CTTAGATAAAGTTTTAGTAA+GGG + chr3_4:57949939-57949958 None:intergenic 20.0%
!!! TCTTAGATAAAGTTTTAGTA+AGG + chr3_4:57949940-57949959 None:intergenic 20.0%
!!! TTTCTCTAAAATAAAGAGAT+TGG - chr3_4:57950392-57950411 Msa0509530:intron 20.0%
!! TAATAAAGAAGCAAACAAAT+TGG + chr3_4:57950899-57950918 None:intergenic 20.0%
!!! TTGCAGTTAATATAAGATTT+TGG - chr3_4:57951613-57951632 Msa0509530:exon 20.0%
!!! TTGTCAATATTTTATTTCTG+CGG - chr3_4:57951637-57951656 Msa0509530:five_prime_UTR 20.0%
!! AACATTGAATGGATTTGAAT+GGG + chr3_4:57947063-57947082 None:intergenic 25.0%
! TAATAAATGGAAGTAATACC+TGG + chr3_4:57947091-57947110 None:intergenic 25.0%
! AGGTATTACTTCCATTTATT+AGG - chr3_4:57947090-57947109 Msa0509530:CDS 25.0%
! GGTATTACTTCCATTTATTA+GGG - chr3_4:57947091-57947110 Msa0509530:CDS 25.0%
!! GTGTAAACCTTATTTAATGA+TGG - chr3_4:57947197-57947216 Msa0509530:CDS 25.0%
!! TTGTTATGCATCTGAATTTT+GGG - chr3_4:57947236-57947255 Msa0509530:CDS 25.0%
! TGTGTATTCGTATTAGAATT+TGG - chr3_4:57947440-57947459 Msa0509530:CDS 25.0%
! GTGTATTCGTATTAGAATTT+GGG - chr3_4:57947441-57947460 Msa0509530:CDS 25.0%
!! TCTATTCAAGTACTACATTT+TGG + chr3_4:57947660-57947679 None:intergenic 25.0%
!!! CTGTTGAAAATGTTCTAAAA+TGG + chr3_4:57947836-57947855 None:intergenic 25.0%
! ATTCAGCTCAATTATTTGTT+TGG - chr3_4:57947869-57947888 Msa0509530:intron 25.0%
! ATTCCATTTGACATTGTAAA+AGG - chr3_4:57948312-57948331 Msa0509530:intron 25.0%
! CTAAAAAACATACAGTCTTA+TGG + chr3_4:57948565-57948584 None:intergenic 25.0%
! ACTGAATGATTGTTTAATAG+AGG - chr3_4:57948974-57948993 Msa0509530:intron 25.0%
! AAAAATATAACCAGTTCAGT+TGG + chr3_4:57949090-57949109 None:intergenic 25.0%
! AAAGTACAATAAGAGAATGT+AGG - chr3_4:57949185-57949204 Msa0509530:intron 25.0%
! AAGTACAATAAGAGAATGTA+GGG - chr3_4:57949186-57949205 Msa0509530:intron 25.0%
! AAAACAGACATATTTGATGT+CGG - chr3_4:57949966-57949985 Msa0509530:intron 25.0%
! AAAGAAAAAAGCAAAGCATA+GGG + chr3_4:57950261-57950280 None:intergenic 25.0%
! TAAAGAAAAAAGCAAAGCAT+AGG + chr3_4:57950262-57950281 None:intergenic 25.0%
!!! ATTATTTTGAGAAGCTAGTT+TGG - chr3_4:57950720-57950739 Msa0509530:intron 25.0%
!!! TTATTTTGAGAAGCTAGTTT+GGG - chr3_4:57950721-57950740 Msa0509530:intron 25.0%
!! TATAATTTTGCGTATCACAA+TGG - chr3_4:57950787-57950806 Msa0509530:intron 25.0%
! TCAATTATTTGCTTCAAGTA+TGG + chr3_4:57951197-57951216 None:intergenic 25.0%
! AACTTAGTATTTGATTCCTT+TGG + chr3_4:57951549-57951568 None:intergenic 25.0%
! AAATGTCGTTCTATATTTAG+AGG + chr3_4:57951735-57951754 None:intergenic 25.0%
! TTGAATTCAACCATGTTTTG+CGG - chr3_4:57946974-57946993 Msa0509530:three_prime_UTR 30.0%
ATGGATTTGAATGGGTAAAA+GGG + chr3_4:57947055-57947074 None:intergenic 30.0%
! AATGGATTTGAATGGGTAAA+AGG + chr3_4:57947056-57947075 None:intergenic 30.0%
! GAACATTGAATGGATTTGAA+TGG + chr3_4:57947064-57947083 None:intergenic 30.0%
AGATGGAAAACCCTAATAAA+TGG + chr3_4:57947104-57947123 None:intergenic 30.0%
CACAAACCCATCATTAAATA+AGG + chr3_4:57947207-57947226 None:intergenic 30.0%
! GTTGTTATGCATCTGAATTT+TGG - chr3_4:57947235-57947254 Msa0509530:CDS 30.0%
!! AATTTTGGGAATTTATGTGC+AGG - chr3_4:57947250-57947269 Msa0509530:CDS 30.0%
ATTCGTATTAGAATTTGGGT+TGG - chr3_4:57947445-57947464 Msa0509530:CDS 30.0%
! TTCGTATTAGAATTTGGGTT+GGG - chr3_4:57947446-57947465 Msa0509530:CDS 30.0%
CCTGACAATGTGTTTATAAT+TGG + chr3_4:57947510-57947529 None:intergenic 30.0%
CCAATTATAAACACATTGTC+AGG - chr3_4:57947507-57947526 Msa0509530:CDS 30.0%
GAACATCCAAATTTAGTGAT+TGG - chr3_4:57947569-57947588 Msa0509530:intron 30.0%
CAAACACCAATCACTAAATT+TGG + chr3_4:57947578-57947597 None:intergenic 30.0%
ACTCTGTTTAACATATGCAA+TGG - chr3_4:57947679-57947698 Msa0509530:intron 30.0%
CTCTGTTTAACATATGCAAT+GGG - chr3_4:57947680-57947699 Msa0509530:intron 30.0%
ACTTTGTGTGAAACTAAGAT+TGG - chr3_4:57947775-57947794 Msa0509530:intron 30.0%
AAAACCAATTTGACGTTTAG+TGG + chr3_4:57947948-57947967 None:intergenic 30.0%
!! CTTCTTGAATAAGCTTTGAA+AGG - chr3_4:57947971-57947990 Msa0509530:intron 30.0%
!! TGTTATGGTTCTGATTATGT+TGG - chr3_4:57948209-57948228 Msa0509530:CDS 30.0%
! TTGCCTTTTACAATGTCAAA+TGG + chr3_4:57948318-57948337 None:intergenic 30.0%
ATTTGACATTGTAAAAGGCA+AGG - chr3_4:57948317-57948336 Msa0509530:intron 30.0%
TTTGACATTGTAAAAGGCAA+GGG - chr3_4:57948318-57948337 Msa0509530:intron 30.0%
ATGATAAAACAGGGATACAA+AGG + chr3_4:57948478-57948497 None:intergenic 30.0%
! CTATATGGTTTAGTTCAGTT+CGG + chr3_4:57948856-57948875 None:intergenic 30.0%
GTAAATTCTAATCAACGGTT+CGG + chr3_4:57948881-57948900 None:intergenic 30.0%
! ATGTTTTGTAGACAGTTAAC+CGG - chr3_4:57948912-57948931 Msa0509530:intron 30.0%
ATTAAAATGTCCAACTGAAC+TGG - chr3_4:57949077-57949096 Msa0509530:intron 30.0%
TAGTATTTATAGCCTGCTAT+GGG - chr3_4:57949270-57949289 Msa0509530:intron 30.0%
! CTAAGCCTTTAGGAATATTA+TGG - chr3_4:57949473-57949492 Msa0509530:intron 30.0%
AAACCATTTCAAGAAAGAGA+AGG - chr3_4:57949687-57949706 Msa0509530:intron 30.0%
TTTCCTTCTCTTTCTTGAAA+TGG + chr3_4:57949693-57949712 None:intergenic 30.0%
TGGCAGAAACACAAATTTAA+TGG + chr3_4:57949869-57949888 None:intergenic 30.0%
AACATATCCACTAAGTTACT+TGG + chr3_4:57949889-57949908 None:intergenic 30.0%
!! GATAAAGTTTTAGTAAGGGA+AGG + chr3_4:57949935-57949954 None:intergenic 30.0%
!! TTCAGTTTTGTGAATCATGT+CGG - chr3_4:57950096-57950115 Msa0509530:intron 30.0%
GATTAGATAATTAGAGTCTC+TGG + chr3_4:57950177-57950196 None:intergenic 30.0%
AAGAAAAAAGCAAAGCATAG+GGG + chr3_4:57950260-57950279 None:intergenic 30.0%
! TCATTGGTTATTGTGTAGAA+AGG + chr3_4:57950552-57950571 None:intergenic 30.0%
TAACCAATGAGTTCTTAAAC+TGG - chr3_4:57950562-57950581 Msa0509530:intron 30.0%
ACATTTGGAAAAGCTTACAA+TGG - chr3_4:57950817-57950836 Msa0509530:intron 30.0%
! ATGGACAGCTTTTTAATCAT+AGG + chr3_4:57950862-57950881 None:intergenic 30.0%
ATTGGTAAGCATGAATCATA+TGG + chr3_4:57950881-57950900 None:intergenic 30.0%
GCAAAAGTTTACAACATCAA+TGG - chr3_4:57951067-57951086 Msa0509530:intron 30.0%
TGTACAGATATTCGATTCAT+GGG - chr3_4:57951130-57951149 Msa0509530:intron 30.0%
!!! GAATGTAGCACATTTTTTTG+AGG - chr3_4:57951520-57951539 Msa0509530:CDS 30.0%
GTTGAGTTTCAGCTATGTTA+CGG + chr3_4:57946889-57946908 None:intergenic 35.0%
! TTCAGACAAACGCAGATTTT+GGG + chr3_4:57946943-57946962 None:intergenic 35.0%
! TTTCAGACAAACGCAGATTT+TGG + chr3_4:57946944-57946963 None:intergenic 35.0%
!!! GTGTTGTTTTCTGGGTAAAA+TGG + chr3_4:57947023-57947042 None:intergenic 35.0%
!!! ATGATGGGTTTGTGTTGTTT+TGG - chr3_4:57947213-57947232 Msa0509530:CDS 35.0%
!! TCTGTGGCATTAGTTGTTTT+AGG + chr3_4:57947289-57947308 None:intergenic 35.0%
TTGTCAGGTCATATGTCATT+TGG - chr3_4:57947522-57947541 Msa0509530:CDS 35.0%
! TGTCAGGTCATATGTCATTT+GGG - chr3_4:57947523-57947542 Msa0509530:CDS 35.0%
GGATTGTCACATTCTTTGTA+TGG - chr3_4:57947890-57947909 Msa0509530:intron 35.0%
GTCACATTCTTTGTATGGTT+TGG - chr3_4:57947895-57947914 Msa0509530:intron 35.0%
AATGCCACTAAACGTCAAAT+TGG - chr3_4:57947941-57947960 Msa0509530:intron 35.0%
! GGTATTTTTCGCAGATGATT+TGG + chr3_4:57948035-57948054 None:intergenic 35.0%
ATCTGAAAACGTTGATCTTG+TGG - chr3_4:57948071-57948090 Msa0509530:intron 35.0%
TTGAAATTTCATTGCAACCG+TGG - chr3_4:57948094-57948113 Msa0509530:intron 35.0%
TTACCCTACTTCTTGTGTTA+TGG - chr3_4:57948194-57948213 Msa0509530:CDS 35.0%
GAACCATAACACAAGAAGTA+GGG + chr3_4:57948200-57948219 None:intergenic 35.0%
AGAACCATAACACAAGAAGT+AGG + chr3_4:57948201-57948220 None:intergenic 35.0%
GATATTCTTACACCACTTTC+TGG - chr3_4:57948282-57948301 Msa0509530:intron 35.0%
GGAATATTCATTCCAGAAAG+TGG + chr3_4:57948297-57948316 None:intergenic 35.0%
! ACTATCAATTTTGCGCAAAG+AGG - chr3_4:57948434-57948453 Msa0509530:intron 35.0%
TGGAATTTGACTAAACAGAC+AGG + chr3_4:57948545-57948564 None:intergenic 35.0%
TGATTGCGAATCATAGATAG+AGG - chr3_4:57948627-57948646 Msa0509530:intron 35.0%
GATTGCGAATCATAGATAGA+GGG - chr3_4:57948628-57948647 Msa0509530:intron 35.0%
ATTGCGAATCATAGATAGAG+GGG - chr3_4:57948629-57948648 Msa0509530:intron 35.0%
! CATATTATCTTGATAGCCAC+TGG + chr3_4:57948711-57948730 None:intergenic 35.0%
CGTCTTAAATAGTAGTTACC+TGG - chr3_4:57948800-57948819 Msa0509530:intron 35.0%
! TGTTTTGTAGACAGTTAACC+GGG - chr3_4:57948913-57948932 Msa0509530:intron 35.0%
AACTCTTCAAAATTTCAGCC+CGG + chr3_4:57948934-57948953 None:intergenic 35.0%
! AGAGAGCTTCGTTTCATTTT+AGG - chr3_4:57949032-57949051 Msa0509530:intron 35.0%
!!! TTCGTTTCATTTTAGGACAG+TGG - chr3_4:57949039-57949058 Msa0509530:intron 35.0%
!!! TCGTTTCATTTTAGGACAGT+GGG - chr3_4:57949040-57949059 Msa0509530:intron 35.0%
! AGGGTTAAGTATCGTATTCT+AGG - chr3_4:57949205-57949224 Msa0509530:intron 35.0%
! GGGTTAAGTATCGTATTCTA+GGG - chr3_4:57949206-57949225 Msa0509530:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr3_4:57949223-57949242 Msa0509530:intron 35.0%
GTAGTATTTATAGCCTGCTA+TGG - chr3_4:57949269-57949288 Msa0509530:intron 35.0%
! AGGTTTCTAGAAGCTTAGAT+GGG - chr3_4:57949357-57949376 Msa0509530:intron 35.0%
! AGCCTTTAGGAATATTATGG+CGG - chr3_4:57949476-57949495 Msa0509530:intron 35.0%
AACCGCCATAATATTCCTAA+AGG + chr3_4:57949481-57949500 None:intergenic 35.0%
GTATGTGCAATAAAGAGAGA+AGG + chr3_4:57949825-57949844 None:intergenic 35.0%
TGTGGAAATTCAACACAGTT+TGG - chr3_4:57949999-57950018 Msa0509530:intron 35.0%
GTGGAAATTCAACACAGTTT+GGG - chr3_4:57950000-57950019 Msa0509530:intron 35.0%
TCAAAACTGAACTACTCTAC+TGG + chr3_4:57950055-57950074 None:intergenic 35.0%
TTCACAAAACTGAATCGAAC+TGG + chr3_4:57950090-57950109 None:intergenic 35.0%
AGATAATTAGAGTCTCTGGT+GGG + chr3_4:57950173-57950192 None:intergenic 35.0%
TAGATAATTAGAGTCTCTGG+TGG + chr3_4:57950174-57950193 None:intergenic 35.0%
!! AAATTGAAAGTATTGGTCGC+AGG - chr3_4:57950284-57950303 Msa0509530:CDS 35.0%
GATAATAAATCTGCAGTCCT+TGG - chr3_4:57950309-57950328 Msa0509530:CDS 35.0%
AGGTGGTTAAAGATTACCTT+TGG + chr3_4:57950429-57950448 None:intergenic 35.0%
TTATTCAGCAGTTCAAAACC+TGG - chr3_4:57950517-57950536 Msa0509530:CDS 35.0%
TGACCAGTTTAAGAACTCAT+TGG + chr3_4:57950568-57950587 None:intergenic 35.0%
CTTAAACTGGTCATTTAGAG+CGG - chr3_4:57950575-57950594 Msa0509530:intron 35.0%
AAGCTTACAATGGAAAAGCT+TGG - chr3_4:57950827-57950846 Msa0509530:intron 35.0%
TATGCTTTCAACTTTCAGAG+TGG - chr3_4:57950955-57950974 Msa0509530:intron 35.0%
ATACAATACCAAGCTGACAA+TGG - chr3_4:57951098-57951117 Msa0509530:intron 35.0%
CTGTACAGATATTCGATTCA+TGG - chr3_4:57951129-57951148 Msa0509530:intron 35.0%
TTACCTTGGATAGCTACATT+TGG + chr3_4:57951368-57951387 None:intergenic 35.0%
!!! CATTTTTTTGAGGTTGCCAA+AGG - chr3_4:57951530-57951549 Msa0509530:CDS 35.0%
TTTCAGCTATGTTACGGTAC+GGG + chr3_4:57946883-57946902 None:intergenic 40.0%
GTTTCAGCTATGTTACGGTA+CGG + chr3_4:57946884-57946903 None:intergenic 40.0%
TTTGAATGGGTAAAAGGGTG+TGG + chr3_4:57947050-57947069 None:intergenic 40.0%
TCCATTCAATGTTCTCTTCC+AGG - chr3_4:57947070-57947089 Msa0509530:CDS 40.0%
ACCTGGAAGAGAACATTGAA+TGG + chr3_4:57947074-57947093 None:intergenic 40.0%
ATTGAGCAAAAGAGGTTCTG+TGG + chr3_4:57947305-57947324 None:intergenic 40.0%
! CTCTTTTGCTCAATGCAGTT+CGG - chr3_4:57947311-57947330 Msa0509530:CDS 40.0%
! TCTTTTGCTCAATGCAGTTC+GGG - chr3_4:57947312-57947331 Msa0509530:CDS 40.0%
! TTTGGCTTATGAGACAAGCT+GGG - chr3_4:57947359-57947378 Msa0509530:CDS 40.0%
TGTGTGAAACTAAGATTGGC+TGG - chr3_4:57947779-57947798 Msa0509530:intron 40.0%
! CAACGTTTTCAGATCTTTCC+CGG + chr3_4:57948065-57948084 None:intergenic 40.0%
AATTTCATTGCAACCGTGGA+AGG - chr3_4:57948098-57948117 Msa0509530:intron 40.0%
GAGAGTTATATTACCCCATC+AGG + chr3_4:57948132-57948151 None:intergenic 40.0%
!! CTCGATACTGATTCTGTAAC+AGG - chr3_4:57948245-57948264 Msa0509530:CDS 40.0%
TGAACTGGGTCAAATATGAC+GGG + chr3_4:57948345-57948364 None:intergenic 40.0%
GTGAACTGGGTCAAATATGA+CGG + chr3_4:57948346-57948365 None:intergenic 40.0%
! AACGTATGGAACTGATTCCT+CGG + chr3_4:57948406-57948425 None:intergenic 40.0%
! ATTTTGCGCAAAGAGGTTTG+AGG - chr3_4:57948441-57948460 Msa0509530:intron 40.0%
GGGTGTAATGACATTAAGTG+AGG - chr3_4:57948649-57948668 Msa0509530:intron 40.0%
ATAGTAGTTACCTGGAGACT+AGG - chr3_4:57948808-57948827 Msa0509530:intron 40.0%
!! ATCAACGGTTCGGTTCTATA+TGG + chr3_4:57948871-57948890 None:intergenic 40.0%
GTTTAATAGAGGAAAGCTGC+TGG - chr3_4:57948985-57949004 Msa0509530:intron 40.0%
!!! TTTCATTTTAGGACAGTGGG+AGG - chr3_4:57949043-57949062 Msa0509530:intron 40.0%
!! TACTCTTGAGAGCATTCTCA+AGG + chr3_4:57949252-57949271 None:intergenic 40.0%
!!! CAGGGGTATTGGTGTATTTT+AGG - chr3_4:57949324-57949343 Msa0509530:intron 40.0%
!!! GGGTATTGGTGTATTTTAGG+CGG - chr3_4:57949327-57949346 Msa0509530:intron 40.0%
!! GTATTTTAGGCGGTTTCTAG+AGG - chr3_4:57949337-57949356 Msa0509530:intron 40.0%
! GAGGTTTCTAGAAGCTTAGA+TGG - chr3_4:57949356-57949375 Msa0509530:intron 40.0%
AAAAAGCAGGAAACGTGAAG+TGG - chr3_4:57949731-57949750 Msa0509530:intron 40.0%
GTTTCTGCCAAGTAACTTAG+TGG - chr3_4:57949879-57949898 Msa0509530:intron 40.0%
! AGGCATTGTTTGAGTCACTA+AGG + chr3_4:57949915-57949934 None:intergenic 40.0%
! ACTGAACTACTCTACTGGTT+TGG + chr3_4:57950050-57950069 None:intergenic 40.0%
ATTGGCATTCTCTGAACCAA+AGG - chr3_4:57950410-57950429 Msa0509530:intron 40.0%
AAGCACATCCTAAGTTCACA+TGG + chr3_4:57950488-57950507 None:intergenic 40.0%
GTAGAAAGGTAAAACATGCC+AGG + chr3_4:57950538-57950557 None:intergenic 40.0%
CACAATGGAGCTGTTACATT+TGG - chr3_4:57950802-57950821 Msa0509530:intron 40.0%
! ACTTTTGCAGTAACGAGTGA+AGG + chr3_4:57951055-57951074 None:intergenic 40.0%
CTGAATCGTTCAAAATCCAC+TGG + chr3_4:57951170-57951189 None:intergenic 40.0%
CACTTGCATAGAGGATAAGA+GGG + chr3_4:57951247-57951266 None:intergenic 40.0%
!! CTTGAGAGAATAGCATTGAC+CGG - chr3_4:57951281-57951300 Msa0509530:CDS 40.0%
TGGATGTTGTAAGCTTGGAT+TGG - chr3_4:57951306-57951325 Msa0509530:CDS 40.0%
! TGTTGTAAGCTTGGATTGGA+CGG - chr3_4:57951310-57951329 Msa0509530:intron 40.0%
ATCCAAGGTAATGTTGATCC+TGG - chr3_4:57951377-57951396 Msa0509530:intron 40.0%
AAATGTGCTACATTCTCCTC+AGG + chr3_4:57951515-57951534 None:intergenic 40.0%
GCGAAGTATGGGAAGGATAA+GGG + chr3_4:57946861-57946880 None:intergenic 45.0%
! CAAACGCAGATTTTGGGCTT+TGG + chr3_4:57946937-57946956 None:intergenic 45.0%
GCTAACTACACCGCAAAACA+TGG + chr3_4:57946987-57947006 None:intergenic 45.0%
!!! GTGGTGTGGTGTTGTTTTCT+GGG + chr3_4:57947031-57947050 None:intergenic 45.0%
!!! TGTGGTGTGGTGTTGTTTTC+TGG + chr3_4:57947032-57947051 None:intergenic 45.0%
CGAACTGCATTGAGCAAAAG+AGG + chr3_4:57947313-57947332 None:intergenic 45.0%
! CTTTTGCTCAATGCAGTTCG+GGG - chr3_4:57947313-57947332 Msa0509530:CDS 45.0%
ATGTCGAAAGACCTCCTGTT+TGG - chr3_4:57947341-57947360 Msa0509530:CDS 45.0%
TGTCTCATAAGCCAAACAGG+AGG + chr3_4:57947355-57947374 None:intergenic 45.0%
GCTTGTCTCATAAGCCAAAC+AGG + chr3_4:57947358-57947377 None:intergenic 45.0%
! GTTTGGCTTATGAGACAAGC+TGG - chr3_4:57947358-57947377 Msa0509530:CDS 45.0%
!! CGCAGATGATTTGGTAACTC+TGG + chr3_4:57948026-57948045 None:intergenic 45.0%
GCGAAAAATACCCGTCATTC+CGG - chr3_4:57948043-57948062 Msa0509530:intron 45.0%
CGAAAAATACCCGTCATTCC+GGG - chr3_4:57948044-57948063 Msa0509530:intron 45.0%
TCAGATCTTTCCCGGAATGA+CGG + chr3_4:57948057-57948076 None:intergenic 45.0%
GTTATATTACCCCATCAGGC+TGG + chr3_4:57948128-57948147 None:intergenic 45.0%
!! AGGCCAAGTTGATCAAGTGA+GGG - chr3_4:57948371-57948390 Msa0509530:intron 45.0%
ACTCCCTCACTTGATCAACT+TGG + chr3_4:57948377-57948396 None:intergenic 45.0%
! ACGTATGGAACTGATTCCTC+GGG + chr3_4:57948405-57948424 None:intergenic 45.0%
GAGGAATCAGTTCCATACGT+TGG - chr3_4:57948405-57948424 Msa0509530:intron 45.0%
GATAGTGCTTCACCAACGTA+TGG + chr3_4:57948420-57948439 None:intergenic 45.0%
CAGGGATACAAAGGTAGTGT+AGG + chr3_4:57948469-57948488 None:intergenic 45.0%
GCGGCTGAGATGATAAAACA+GGG + chr3_4:57948487-57948506 None:intergenic 45.0%
TGCGGCTGAGATGATAAAAC+AGG + chr3_4:57948488-57948507 None:intergenic 45.0%
! TTATCTTGATAGCCACTGGC+AGG + chr3_4:57948707-57948726 None:intergenic 45.0%
TTCAGTTCGGTTCTGCAGTT+CGG + chr3_4:57948843-57948862 None:intergenic 45.0%
TTTATAGCCTGCTATGGGCT+TGG - chr3_4:57949275-57949294 Msa0509530:intron 45.0%
TTATAGCCTGCTATGGGCTT+GGG - chr3_4:57949276-57949295 Msa0509530:intron 45.0%
TAGAAGTGATACGACCTTGC+AGG - chr3_4:57949523-57949542 Msa0509530:intron 45.0%
GTTTCATAGCCAATCCTGCA+AGG + chr3_4:57949540-57949559 None:intergenic 45.0%
! GTGAAGTGGTCTAAAGCATG+AGG - chr3_4:57949745-57949764 Msa0509530:intron 45.0%
GTCGGCAGTTCAGTTTAGTT+CGG - chr3_4:57950114-57950133 Msa0509530:intron 45.0%
! CAGTTCAGTTTAGTTCGGTG+TGG - chr3_4:57950119-57950138 Msa0509530:intron 45.0%
! CTGGTGGGCAGTTTAAACTT+CGG + chr3_4:57950158-57950177 None:intergenic 45.0%
!!! ATCTGCAGTCCTTGGTTTTG+TGG - chr3_4:57950317-57950336 Msa0509530:intron 45.0%
!!! TCTGCAGTCCTTGGTTTTGT+GGG - chr3_4:57950318-57950337 Msa0509530:intron 45.0%
ACTTACGAGATAGACGAAGG+TGG + chr3_4:57950446-57950465 None:intergenic 45.0%
CCTACTTACGAGATAGACGA+AGG + chr3_4:57950449-57950468 None:intergenic 45.0%
CCTTCGTCTATCTCGTAAGT+AGG - chr3_4:57950446-57950465 Msa0509530:intron 45.0%
GCTTGTCTCCATGTGAACTT+AGG - chr3_4:57950477-57950496 Msa0509530:CDS 45.0%
AGTAACGAGTGAAGGATCTG+TGG + chr3_4:57951047-57951066 None:intergenic 45.0%
TAGAGGATAAGAGGGAGTTC+TGG + chr3_4:57951239-57951258 None:intergenic 45.0%
CCACTTGCATAGAGGATAAG+AGG + chr3_4:57951248-57951267 None:intergenic 45.0%
CCTCTTATCCTCTATGCAAG+TGG - chr3_4:57951245-57951264 Msa0509530:CDS 45.0%
ATCCTCTATGCAAGTGGATC+AGG - chr3_4:57951251-57951270 Msa0509530:CDS 45.0%
CAAGCTTACAACATCCACAC+CGG + chr3_4:57951303-57951322 None:intergenic 45.0%
! CTTGGATTGGACGGTTGATA+TGG - chr3_4:57951319-57951338 Msa0509530:intron 45.0%
TTGATATGGCTGACGGTAGA+AGG - chr3_4:57951333-57951352 Msa0509530:intron 45.0%
GGACCAAATGTAGCTATCCA+AGG - chr3_4:57951362-57951381 Msa0509530:intron 45.0%
CACCAGGATCAACATTACCT+TGG + chr3_4:57951382-57951401 None:intergenic 45.0%
GTTGATCCTGGTGTTCTGTT+TGG - chr3_4:57951389-57951408 Msa0509530:intron 45.0%
TTCGATCCAAACAGAACACC+AGG + chr3_4:57951398-57951417 None:intergenic 45.0%
CGAAAGAGCTGATTACCGAT+AGG - chr3_4:57951414-57951433 Msa0509530:intron 45.0%
CACGGTATCGTGTATCCTAT+CGG + chr3_4:57951432-57951451 None:intergenic 45.0%
GATACACGATACCGTGAGAA+AGG - chr3_4:57951436-57951455 Msa0509530:intron 45.0%
GGGAAACATATCCTGAACCT+TGG - chr3_4:57951467-57951486 Msa0509530:intron 45.0%
CATATCCTGAACCTTGGTCA+CGG - chr3_4:57951473-57951492 Msa0509530:intron 45.0%
GGCGAAGTATGGGAAGGATA+AGG + chr3_4:57946862-57946881 None:intergenic 50.0%
TTACGGTACGGGCGAAGTAT+GGG + chr3_4:57946872-57946891 None:intergenic 50.0%
! ATGGGTAAAAGGGTGTGGTG+TGG + chr3_4:57947045-57947064 None:intergenic 50.0%
! ACAAGCTGGGAGGTACATGA+AGG - chr3_4:57947372-57947391 Msa0509530:CDS 50.0%
TACAAGCCGGAGGTTTAGTC+AGG + chr3_4:57947472-57947491 None:intergenic 50.0%
! GACTAAACCTCCGGCTTGTA+AGG - chr3_4:57947472-57947491 Msa0509530:CDS 50.0%
! TAAACCTCCGGCTTGTAAGG+TGG - chr3_4:57947475-57947494 Msa0509530:CDS 50.0%
! AAACCTCCGGCTTGTAAGGT+GGG - chr3_4:57947476-57947495 Msa0509530:CDS 50.0%
CAGATCTTTCCCGGAATGAC+GGG + chr3_4:57948056-57948075 None:intergenic 50.0%
TCAGGCTGGAAAACCTTCCA+CGG + chr3_4:57948114-57948133 None:intergenic 50.0%
! TGGAAGGTTTTCCAGCCTGA+TGG - chr3_4:57948114-57948133 Msa0509530:intron 50.0%
! GGAAGGTTTTCCAGCCTGAT+GGG - chr3_4:57948115-57948134 Msa0509530:intron 50.0%
! GAAGGTTTTCCAGCCTGATG+GGG - chr3_4:57948116-57948135 Msa0509530:intron 50.0%
CACTTGATCAACTTGGCCTG+CGG + chr3_4:57948370-57948389 None:intergenic 50.0%
!! CAGGCCAAGTTGATCAAGTG+AGG - chr3_4:57948370-57948389 Msa0509530:intron 50.0%
AGTGAGGGAGTTTATTCCCG+AGG - chr3_4:57948386-57948405 Msa0509530:intron 50.0%
GTTGAACAGTCCTAGTCTCC+AGG + chr3_4:57948821-57948840 None:intergenic 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG - chr3_4:57949305-57949324 Msa0509530:intron 50.0%
TGCTTGGTTCCCAAGCAACA+GGG - chr3_4:57949306-57949325 Msa0509530:intron 50.0%
! TTCCCAAGCAACAGGGGTAT+TGG - chr3_4:57949313-57949332 Msa0509530:intron 50.0%
! CACCAATACCCCTGTTGCTT+GGG + chr3_4:57949318-57949337 None:intergenic 50.0%
ACACCAATACCCCTGTTGCT+TGG + chr3_4:57949319-57949338 None:intergenic 50.0%
CTTAGATGGGCGATGCCTTA+AGG - chr3_4:57949370-57949389 Msa0509530:intron 50.0%
!! AGGCTCTAAGACCTCCAGAA+GGG + chr3_4:57949440-57949459 None:intergenic 50.0%
!! AAGGCTCTAAGACCTCCAGA+AGG + chr3_4:57949441-57949460 None:intergenic 50.0%
TGGAGGTCTTAGAGCCTTTC+TGG - chr3_4:57949443-57949462 Msa0509530:intron 50.0%
AGGTCTTAGAGCCTTTCTGG+AGG - chr3_4:57949446-57949465 Msa0509530:intron 50.0%
GGTCTTAGAGCCTTTCTGGA+GGG - chr3_4:57949447-57949466 Msa0509530:intron 50.0%
TGGAGGGCTTCTAAGCCTTT+AGG - chr3_4:57949463-57949482 Msa0509530:intron 50.0%
GTGATACGACCTTGCAGGAT+TGG - chr3_4:57949528-57949547 Msa0509530:intron 50.0%
GATGTCGGTGCACAGTTATG+TGG - chr3_4:57949981-57950000 Msa0509530:intron 50.0%
GGGTTTGAACCAGTAGAGCA+TGG - chr3_4:57950020-57950039 Msa0509530:intron 50.0%
! TTTGGTGCACCATGCTCTAC+TGG + chr3_4:57950032-57950051 None:intergenic 50.0%
ACATACGACGCCAGGGTAAA+CGG + chr3_4:57950348-57950367 None:intergenic 50.0%
TTCAACCACATACGACGCCA+GGG + chr3_4:57950355-57950374 None:intergenic 50.0%
!! GGATAAGAGGGAGTTCTGGA+TGG + chr3_4:57951235-57951254 None:intergenic 50.0%
CTCCTGATCCACTTGCATAG+AGG + chr3_4:57951256-57951275 None:intergenic 50.0%
CTCTATGCAAGTGGATCAGG+AGG - chr3_4:57951254-57951273 Msa0509530:CDS 50.0%
!! GAGAATAGCATTGACCGGTG+TGG - chr3_4:57951286-57951305 Msa0509530:CDS 50.0%
CGGTGTGGATGTTGTAAGCT+TGG - chr3_4:57951301-57951320 Msa0509530:CDS 50.0%
! TGGACGGTTGATATGGCTGA+CGG - chr3_4:57951326-57951345 Msa0509530:intron 50.0%
GCTGACGGTAGAAGGAGATT+GGG - chr3_4:57951341-57951360 Msa0509530:intron 50.0%
CATCGTAGTAGGTACTCCTG+AGG - chr3_4:57951496-57951515 Msa0509530:intron 50.0%
GTTACGGTACGGGCGAAGTA+TGG + chr3_4:57946873-57946892 None:intergenic 55.0%
GGCTTATGAGACAAGCTGGG+AGG - chr3_4:57947362-57947381 Msa0509530:CDS 55.0%
GTTGGGCCTGACTAAACCTC+CGG - chr3_4:57947463-57947482 Msa0509530:CDS 55.0%
! AACCTCCGGCTTGTAAGGTG+GGG - chr3_4:57947477-57947496 Msa0509530:CDS 55.0%
TTTGACCCAGTTCACTCCGC+AGG - chr3_4:57948351-57948370 Msa0509530:intron 55.0%
AACACTGTCTGTCCTGCCAG+TGG - chr3_4:57948692-57948711 Msa0509530:intron 55.0%
GACAGTGGGAGGACGAAAGA+AGG - chr3_4:57949054-57949073 Msa0509530:intron 55.0%
CCTGCTATGGGCTTGGGTTT+CGG - chr3_4:57949282-57949301 Msa0509530:intron 55.0%
GCTTGGTTCCCAAGCAACAG+GGG - chr3_4:57949307-57949326 Msa0509530:intron 55.0%
TAAGACCTCCAGAAGGGCTC+AGG + chr3_4:57949434-57949453 None:intergenic 55.0%
GGCTTAGAAGCCCTCCAGAA+AGG + chr3_4:57949460-57949479 None:intergenic 55.0%
! ACGGAGCACCCACAAAACCA+AGG + chr3_4:57950329-57950348 None:intergenic 55.0%
GTTTACCCTGGCGTCGTATG+TGG - chr3_4:57950347-57950366 Msa0509530:intron 55.0%
CTTCAACCACATACGACGCC+AGG + chr3_4:57950356-57950375 None:intergenic 55.0%
CTGGCGTCGTATGTGGTTGA+AGG - chr3_4:57950354-57950373 Msa0509530:intron 55.0%
GCGTCGTATGTGGTTGAAGG+CGG - chr3_4:57950357-57950376 Msa0509530:intron 55.0%
CTTGCGCTCCATTGTCAGCT+TGG + chr3_4:57951109-57951128 None:intergenic 55.0%
GGCAACAGAGCTTAGTCCAG+TGG - chr3_4:57951151-57951170 Msa0509530:intron 55.0%
GGCTGACGGTAGAAGGAGAT+TGG - chr3_4:57951340-57951359 Msa0509530:intron 55.0%
CACGATACCGTGAGAAAGGC+TGG - chr3_4:57951440-57951459 Msa0509530:intron 55.0%
ACCGTGAGAAAGGCTGGTAG+AGG - chr3_4:57951446-57951465 Msa0509530:intron 55.0%
CCCTCTACCAGCCTTTCTCA+CGG + chr3_4:57951450-57951469 None:intergenic 55.0%
CCGTGAGAAAGGCTGGTAGA+GGG - chr3_4:57951447-57951466 Msa0509530:intron 55.0%
CTACTACGATGCCGTGACCA+AGG + chr3_4:57951487-57951506 None:intergenic 55.0%
CTTGGTCACGGCATCGTAGT+AGG - chr3_4:57951485-57951504 Msa0509530:intron 55.0%
GGTACGGGCGAAGTATGGGA+AGG + chr3_4:57946868-57946887 None:intergenic 60.0%
! TCCGGCTTGTAAGGTGGGGA+CGG - chr3_4:57947481-57947500 Msa0509530:CDS 60.0%
ACCGTCCCCACCTTACAAGC+CGG + chr3_4:57947485-57947504 None:intergenic 60.0%
CTTGGCCTGCGGAGTGAACT+GGG + chr3_4:57948359-57948378 None:intergenic 60.0%
ACTTGGCCTGCGGAGTGAAC+TGG + chr3_4:57948360-57948379 None:intergenic 60.0%
CCGAAACCCAAGCCCATAGC+AGG + chr3_4:57949285-57949304 None:intergenic 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG - chr3_4:57949290-57949309 Msa0509530:intron 60.0%
CAGAAGGGCTCCTGAGACTC+CGG + chr3_4:57949404-57949423 None:intergenic 60.0%
AGTCTCAGGAGCCCTTCTGG+AGG - chr3_4:57949405-57949424 Msa0509530:intron 60.0%
GTCTCAGGAGCCCTTCTGGA+GGG - chr3_4:57949406-57949425 Msa0509530:intron 60.0%
TGTGGGTGCTCCGTTTACCC+TGG - chr3_4:57950335-57950354 Msa0509530:intron 60.0%
CGATGCCGTGACCAAGGTTC+AGG + chr3_4:57951481-57951500 None:intergenic 60.0%
GTCCCCACCTTACAAGCCGG+AGG + chr3_4:57947482-57947501 None:intergenic 65.0%
ATGCCTTAAGGCGAGCGCGC+CGG - chr3_4:57949382-57949401 Msa0509530:intron 65.0%
CGGAGTCTCAGGAGCCCTTC+TGG - chr3_4:57949402-57949421 Msa0509530:intron 65.0%
ACTCCGGCGCGCTCGCCTTA+AGG + chr3_4:57949388-57949407 None:intergenic 70.0%
GGCTCAGGCGCCCTCCAGAA+GGG + chr3_4:57949419-57949438 None:intergenic 70.0%
GGGCTCAGGCGCCCTCCAGA+AGG + chr3_4:57949420-57949439 None:intergenic 75.0%
!! GGAGGGCGCCTGAGCCCTTC+TGG - chr3_4:57949423-57949442 Msa0509530:intron 75.0%
GGGCGCCTGAGCCCTTCTGG+AGG - chr3_4:57949426-57949445 Msa0509530:intron 75.0%
! GGCGAGCGCGCCGGAGTCTC+AGG - chr3_4:57949391-57949410 Msa0509530:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57946835 57951765 57946835 ID=Msa0509530;Name=Msa0509530
chr3_4 mRNA 57946835 57951765 57946835 ID=Msa0509530-mRNA-1;Parent=Msa0509530;Name=Msa0509530-mRNA-1;_AED=0.11;_eAED=0.11;_QI=151|1|1|1|1|1|6|200|389
chr3_4 exon 57946835 57947550 57946835 ID=Msa0509530-mRNA-1:exon:13329;Parent=Msa0509530-mRNA-1
chr3_4 exon 57948169 57948294 57948169 ID=Msa0509530-mRNA-1:exon:13328;Parent=Msa0509530-mRNA-1
chr3_4 exon 57950145 57950333 57950145 ID=Msa0509530-mRNA-1:exon:13327;Parent=Msa0509530-mRNA-1
chr3_4 exon 57950463 57950573 57950463 ID=Msa0509530-mRNA-1:exon:13326;Parent=Msa0509530-mRNA-1
chr3_4 exon 57951207 57951328 57951207 ID=Msa0509530-mRNA-1:exon:13325;Parent=Msa0509530-mRNA-1
chr3_4 exon 57951509 57951765 57951509 ID=Msa0509530-mRNA-1:exon:13324;Parent=Msa0509530-mRNA-1
chr3_4 five_prime_UTR 57951615 57951765 57951615 ID=Msa0509530-mRNA-1:five_prime_utr;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57951509 57951614 57951509 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57951207 57951328 57951207 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57950463 57950573 57950463 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57950145 57950333 57950145 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57948169 57948294 57948169 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 CDS 57947035 57947550 57947035 ID=Msa0509530-mRNA-1:cds;Parent=Msa0509530-mRNA-1
chr3_4 three_prime_UTR 57946835 57947034 57946835 ID=Msa0509530-mRNA-1:three_prime_utr;Parent=Msa0509530-mRNA-1
Gene Sequence

>Msa0509530

ATGTTTTGCGGTGTAGTTAGCACTTCTTTCACTTCCATTTTACCCAGAAAACAACACCACACCACACCCTTTTACCCATTCAAATCCATTCAATGTTCTCTTCCAGGAGCTGTTGCTGAACCTAAAACAACTAATGCCACAGAACCTCTTTTGCTCAATGCAGTTCGGGGATTAGATGTCGAAAGACCTCCTGTTTGGCTTATGAGACAAGCTGGGAGGTACATGAAGAGTTACCAAATCATCTGCGAAAAATACCCGTCATTCCGGGAAAGATCTGAAAACGTTGATCTTGTGGTTGAAATTTCATTGCAACCGTGGAAGGTTTTCCAGCCTGATGGGGTGATATTATTCTCAGATATTCTTACACCACTTTCTGGAATGAATATTCCATTTGACATTGTAAAAGGCAAGGGTCCCGTCATATTTGACCCAGTTCACTCCGCAGGCCAAGTTGATCAAGTGAGGGAGTTTATTCCCGAGGAATCAGTTCCATACGTTGGTGAAGCACTATCAATTTTGCGCAAAGAGGTAGATAATAAATCTGCAGTCCTTGGTTTTGTGGGTGCTCCGTTTACCCTGGCGTCGTATGTGGTTGAAGGCGGTTCATCAAAACATTTCTCTAAAATAAAGAGATTGGCATTCTCTGAACCAAAGATCCTTCACTCGTTACTGCAAAAGTTTACAACATCAATGGCAAGATACATACAATACCAAGCTGACAATGGAGCGCAAGCTGTACAGATATTCGATTCATGGGCAACAGAGCTTAGTCCAGTGGATTTTGAACGATTCAGTTTGCCATACTTGAAGCAAATAATTGACACTGTAAAGAAAAGCCATCCAGAACTCCCTCTTATCCTCTATGCAAGTGGATCAGGAGGCTTACTTGAGAGAATAGCATTGACCGGTGTGGATGTTGTAAGCTTGGATTGGACGGTTGATATGGCTGACGGTAGAAGGAGATTGGGACCAAATGTAGCTATCCAAGGTAATGTTGATCCTGGTGTTCTGTTTGGATCGAAAGAGCTGATTACCGATAGGATACACGATACCGTGAGAAAGGCTGGTAGAGGGAAACATATCCTGAACCTTGGTCACGGCATCGTAGTAGGTACTCCTGAGGAGAATGTAGCACATTTTTTTGAGGTTGCCAAAGGAATCAAATACTAA

Protein sequence

>Msa0509530

MFCGVVSTSFTSILPRKQHHTTPFYPFKSIQCSLPGAVAEPKTTNATEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKSAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFERFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIALTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIKY*