AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648840 MtrunA17_Chr4g0040481 90.805 87 5 1 3 89 341 424 4.49e-49 160
Msa0648840 MtrunA17_Chr2g0324891 65.116 86 25 3 6 86 337 422 2.90e-26 99.8
Msa0648840 MtrunA17_Chr4g0054981 61.538 52 20 0 35 86 497 548 1.50e-15 70.1
Msa0648840 MtrunA17_Chr5g0400241 54.762 42 19 0 39 80 490 531 4.70e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 163 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACATCACTTTACTATTT+TGG 0.121915 4_3:+55373282 Msa0648840:five_prime_UTR
GGCGGTGCCTTCAAGGATTT+TGG 0.156203 4_3:+55370108 Msa0648840:five_prime_UTR
TTGTCTTCTACTCTGAATTT+TGG 0.203668 4_3:+55373316 Msa0648840:five_prime_UTR
CACCTCAAGATCCTTCATTT+TGG 0.206831 4_3:+55370680 Msa0648840:five_prime_UTR
CCTTTCCGAAGGAAATTTAT+TGG 0.220430 4_3:+55368994 Msa0648840:five_prime_UTR
TGGTCAGCCAAACTTATATT+TGG 0.226106 4_3:-55373473 None:intergenic
TGTCAATCTTATCTTTAAAA+AGG 0.233079 4_3:-55373341 None:intergenic
TATGGGATTAGTAAATAAAA+TGG 0.301926 4_3:+55374297 Msa0648840:three_prime_UTR
ATGCCATGGGGTGGGATGCC+GGG 0.306670 4_3:-55373545 None:intergenic
TGGAGACATCTTACCGGATT+TGG 0.308487 4_3:+55369060 Msa0648840:five_prime_UTR
GGATGAGAAATCGTCGAATT+AGG 0.310005 4_3:-55374122 None:intergenic
GGCCGGATCATTGCGTTTAT+CGG 0.317082 4_3:-55373212 None:intergenic
TATGTACGATTGGTATAGTA+TGG 0.317826 4_3:+55374279 Msa0648840:three_prime_UTR
CCCATTTGATTATTATTAGA+AGG 0.319606 4_3:+55368829 Msa0648840:five_prime_UTR
AAACCCATGGTGGGTGCAGC+TGG 0.319978 4_3:-55370505 None:intergenic
TTATTCTCCAAATATAAGTT+TGG 0.331385 4_3:+55373466 Msa0648840:five_prime_UTR
AATCGTACATATATACAAAA+TGG 0.337228 4_3:-55374267 None:intergenic
ATGGGGACATCCTTCAAATA+TGG 0.339407 4_3:+55370588 Msa0648840:five_prime_UTR
AAAACTAATTAATCCTTTAC+CGG 0.340492 4_3:+55374075 Msa0648840:three_prime_UTR
ATGGGATTAGTAAATAAAAT+GGG 0.352145 4_3:+55374298 Msa0648840:three_prime_UTR
CATGCCATGGGGTGGGATGC+CGG 0.361244 4_3:-55373546 None:intergenic
AACTTCGACGACTTCTTTGT+TGG 0.363264 4_3:+55369025 Msa0648840:five_prime_UTR
AGATGCAATGCAACATCTAA+TGG 0.367911 4_3:-55374143 None:intergenic
ATACATGTAAGGGTCTAAAA+TGG 0.371409 4_3:-55370567 None:intergenic
TGGGGTGGGATGCCGGGGAT+TGG 0.376158 4_3:-55373539 None:intergenic
ACCTTCTAATAATAATCAAA+TGG 0.380751 4_3:-55368830 None:intergenic
ACAAATCTCCTGTGCAAGTC+TGG 0.392453 4_3:-55370055 None:intergenic
GAGAACGTGTGTTCAAATAA+TGG 0.401910 4_3:-55368690 None:intergenic
CCAGCACTTGATAGCGTAAT+GGG 0.402444 4_3:+55373998 Msa0648840:CDS
GAGGATAAAACAAGCTGTTC+GGG 0.406204 4_3:+55369205 Msa0648840:five_prime_UTR
GAGGAGGAGGAGGATGAGGG+GGG 0.410471 4_3:-55370528 None:intergenic
TTAAAAGATGCAGGTGGAAA+AGG 0.411700 4_3:+55369286 Msa0648840:five_prime_UTR
GATGAATTCTTCGGCGTCAC+TGG 0.421305 4_3:+55369138 Msa0648840:five_prime_UTR
TGTGCTATATTTATATATGT+TGG 0.422119 4_3:-55373393 None:intergenic
TGAGGATAAAACAAGCTGTT+CGG 0.423559 4_3:+55369204 Msa0648840:five_prime_UTR
GAGAGCATAGACGCAGCTAT+TGG 0.425120 4_3:+55373926 Msa0648840:CDS
TGTTCAAATAATGGAGAGTT+AGG 0.425347 4_3:-55368681 None:intergenic
ATAATCTCCAAAATCCTTGA+AGG 0.430397 4_3:-55370115 None:intergenic
CTCCGATAAACGCAATGATC+CGG 0.431873 4_3:+55373210 Msa0648840:five_prime_UTR
CATCTTACCGGATTTGGTAA+TGG 0.436295 4_3:+55369066 Msa0648840:five_prime_UTR
TAACATTGCTAGTCACCTTC+AGG 0.436461 4_3:+55370162 Msa0648840:five_prime_UTR
CCTTTACCGGGGAGCTAGCT+AGG 0.438569 4_3:+55374088 Msa0648840:three_prime_UTR
GAGAACTCAGCAAACATCTC+TGG 0.443524 4_3:-55369091 None:intergenic
ATAAGTTTGGCTGACCATAA+AGG 0.450481 4_3:+55373479 Msa0648840:five_prime_UTR
ACCACTGTTGTCAGAGGTGG+TGG 0.450953 4_3:-55373251 None:intergenic
TGGACAAGGCGGTGCCTTCA+AGG 0.452098 4_3:+55370101 Msa0648840:five_prime_UTR
TCTGGATCCATTACCAAATC+CGG 0.453183 4_3:-55369073 None:intergenic
ACAATTACAACGGGCGACTT+CGG 0.456230 4_3:+55368968 Msa0648840:five_prime_UTR
GGTGGGAAACAATGTGTTCC+TGG 0.458402 4_3:-55373233 None:intergenic
ATGGTGGGTGCAGCTGGCCA+TGG 0.458606 4_3:-55370499 None:intergenic
GCTTTCCAATAAATTTCCTT+CGG 0.459139 4_3:-55368999 None:intergenic
TCGAAGAAGTGACCGGGAGC+AGG 0.463586 4_3:-55373599 None:intergenic
CCTTCTAATAATAATCAAAT+GGG 0.463808 4_3:-55368829 None:intergenic
CATGAGAGTGGCTGCGGTGT+AGG 0.464099 4_3:-55370634 None:intergenic
AATCAAAGGAGACAAGTATA+TGG 0.464153 4_3:+55370445 Msa0648840:five_prime_UTR
GAAGGTGACTAGCAATGTTA+TGG 0.464906 4_3:-55370159 None:intergenic
GAATTCAAAGAAAGATTATG+AGG 0.466750 4_3:+55369186 Msa0648840:five_prime_UTR
TGCCATGGGGTGGGATGCCG+GGG 0.471359 4_3:-55373544 None:intergenic
AAGCAGCAAGTTGGAATCAA+AGG 0.471928 4_3:+55370431 Msa0648840:five_prime_UTR
GCTGAGTTCTCCGTTAGTTA+CGG 0.472120 4_3:+55369103 Msa0648840:five_prime_UTR
ATGGCCAGCTGCACCCACCA+TGG 0.477260 4_3:+55370501 Msa0648840:five_prime_UTR
TGTTTATTGTGCAGGTGGAT+TGG 0.477271 4_3:+55370029 Msa0648840:intron
GTTGCACTCAAGCTTAGAAA+TGG 0.477328 4_3:-55368751 None:intergenic
AGACAAGTATATGGTGGTGT+AGG 0.478471 4_3:+55370454 Msa0648840:five_prime_UTR
GACAAGTATATGGTGGTGTA+GGG 0.478876 4_3:+55370455 Msa0648840:five_prime_UTR
TGGCCAGCTGCACCCACCAT+GGG 0.485571 4_3:+55370502 Msa0648840:five_prime_UTR
CCTAGCTAGCTCCCCGGTAA+AGG 0.488512 4_3:-55374088 None:intergenic
CCATGGTTGCCACTACCACT+TGG 0.489750 4_3:+55373965 Msa0648840:CDS
AACATGCAGAGACCATCATT+TGG 0.489976 4_3:+55373512 Msa0648840:exon
CGTCGATGGAGACATCTTAC+CGG 0.493741 4_3:+55369054 Msa0648840:five_prime_UTR
GATCTGCTTTACACATGCCA+TGG 0.496492 4_3:-55373559 None:intergenic
TCTTTGTTAGTGTTCCTCAA+TGG 0.497869 4_3:-55368902 None:intergenic
TCCAGCACTTGATAGCGTAA+TGG 0.499694 4_3:+55373997 Msa0648840:CDS
ATTAGCACCCTTCCTGCTCC+CGG 0.500715 4_3:+55373587 Msa0648840:CDS
GGGAGTACTACAATTACAAC+GGG 0.501212 4_3:+55368959 Msa0648840:five_prime_UTR
AGGATGTCCCCATACATGTA+AGG 0.503004 4_3:-55370578 None:intergenic
GAAGTGACCGGGAGCAGGAA+GGG 0.509953 4_3:-55373594 None:intergenic
CCAATAAATTTCCTTCGGAA+AGG 0.511123 4_3:-55368994 None:intergenic
TTGAGGAACACTAACAAAGA+TGG 0.514130 4_3:+55368905 Msa0648840:five_prime_UTR
CCCATTACGCTATCAAGTGC+TGG 0.514753 4_3:-55373998 None:intergenic
ATCTGCTTTACACATGCCAT+GGG 0.515933 4_3:-55373558 None:intergenic
TGATTCCTCGCCGTAACTAA+CGG 0.519226 4_3:-55369113 None:intergenic
TTTGTTGGCATCAACGTCGA+TGG 0.522723 4_3:+55369040 Msa0648840:five_prime_UTR
GAAGGATCTTGAGGTGGTGG+AGG 0.522935 4_3:-55370673 None:intergenic
GGAATCAGAGATGAATTCTT+CGG 0.526908 4_3:+55369129 Msa0648840:five_prime_UTR
AATGAAGGATCTTGAGGTGG+TGG 0.528793 4_3:-55370676 None:intergenic
GCTTTGAGTCCAAGTGGTAG+TGG 0.528879 4_3:-55373974 None:intergenic
AGATGGAAACCAAGAAGAGA+TGG 0.529997 4_3:+55368922 Msa0648840:five_prime_UTR
AAATGGTGCAATGGTGCCAT+AGG 0.534447 4_3:-55370550 None:intergenic
AAAGACTGGTCCATATTTGA+AGG 0.536097 4_3:-55370598 None:intergenic
GGAAACAATGTGTTCCTGGC+CGG 0.538523 4_3:-55373229 None:intergenic
TTTCTTCAAGTGCATGATGA+GGG 0.538544 4_3:-55374055 None:intergenic
ATGGTGGTGTAGGGGTGAAG+AGG 0.540082 4_3:+55370464 Msa0648840:five_prime_UTR
TGGTGGTGTAGGGGTGAAGA+GGG 0.540938 4_3:+55370465 Msa0648840:five_prime_UTR
TGGGAAGTCGAAGAAGTGAC+CGG 0.545060 4_3:-55373606 None:intergenic
TGCAATGGTGCCATAGGAGG+AGG 0.545767 4_3:-55370544 None:intergenic
AAAACAAGCTGTTCGGGTCA+AGG 0.545941 4_3:+55369211 Msa0648840:five_prime_UTR
AATCCATTGTTAAAAGATGC+AGG 0.548676 4_3:+55369277 Msa0648840:five_prime_UTR
GGGATTGGACATCCAAATGA+TGG 0.551089 4_3:-55373524 None:intergenic
CTACACCGCAGCCACTCTCA+TGG 0.554231 4_3:+55370635 Msa0648840:five_prime_UTR
AAGCTGTTCGGGTCAAGGCT+CGG 0.557290 4_3:+55369216 Msa0648840:five_prime_UTR
TGGTGCAATGGTGCCATAGG+AGG 0.557595 4_3:-55370547 None:intergenic
GCTTTACACATGCCATGGGG+TGG 0.557961 4_3:-55373554 None:intergenic
GGTGCCATAGGAGGAGGAGG+AGG 0.561800 4_3:-55370538 None:intergenic
TTGGCATTCTCACCACCAGC+AGG 0.563830 4_3:+55370699 Msa0648840:five_prime_UTR
ACTCAAGCTTAGAAATGGTA+GGG 0.565017 4_3:-55368746 None:intergenic
AAACTAATTAATCCTTTACC+GGG 0.572727 4_3:+55374076 Msa0648840:three_prime_UTR
CACTCAAGCTTAGAAATGGT+AGG 0.573776 4_3:-55368747 None:intergenic
CTTCAAGTGCATGATGAGGG+TGG 0.573822 4_3:-55374052 None:intergenic
GAAACTCAATATATAAAACT+AGG 0.576041 4_3:-55368807 None:intergenic
TGCCAAAATGAAGGATCTTG+AGG 0.576157 4_3:-55370682 None:intergenic
TCATTTGGATGTCCAATCCC+CGG 0.576190 4_3:+55373527 Msa0648840:CDS
CTTTACACATGCCATGGGGT+GGG 0.577896 4_3:-55373553 None:intergenic
ATCCCCGGCATCCCACCCCA+TGG 0.583757 4_3:+55373542 Msa0648840:CDS
GTGCAAGCTGTGGAACAGCT+AGG 0.587705 4_3:+55370076 Msa0648840:five_prime_UTR
GTGAAGCAGAAGCAGCAAGT+TGG 0.590428 4_3:+55370422 Msa0648840:five_prime_UTR
ATAAACGCAATGATCCGGCC+AGG 0.590506 4_3:+55373215 Msa0648840:five_prime_UTR
GGATGTCCCCATACATGTAA+GGG 0.590827 4_3:-55370577 None:intergenic
CCAAGTGGTAGTGGCAACCA+TGG 0.591902 4_3:-55373965 None:intergenic
AATGGTGCCATAGGAGGAGG+AGG 0.593332 4_3:-55370541 None:intergenic
GGTGTCCATGAGAGTGGCTG+CGG 0.595402 4_3:-55370640 None:intergenic
ATGTACGATTGGTATAGTAT+GGG 0.596341 4_3:+55374280 Msa0648840:three_prime_UTR
ATTGGACACCAGACTTGCAC+AGG 0.600253 4_3:+55370047 Msa0648840:five_prime_UTR
GAAGGTTGAGTACTTGAGTG+TGG 0.600374 4_3:+55368847 Msa0648840:five_prime_UTR
TTTAGACCCTTACATGTATG+GGG 0.601372 4_3:+55370571 Msa0648840:five_prime_UTR
TCACTTCTTCGACTTCCCAC+CGG 0.602135 4_3:+55373610 Msa0648840:CDS
TGGGATTAGTAAATAAAATG+GGG 0.607535 4_3:+55374299 Msa0648840:three_prime_UTR
GCCACTCTCATGGACACCAT+CGG 0.612134 4_3:+55370645 Msa0648840:five_prime_UTR
AGAAGTGACCGGGAGCAGGA+AGG 0.612201 4_3:-55373595 None:intergenic
GACTTCGGAGACCTTTCCGA+AGG 0.616050 4_3:+55368983 Msa0648840:five_prime_UTR
AATGCTCAAGCATTTGCGCA+TGG 0.616694 4_3:-55374242 None:intergenic
GCCACATGTGCAGAAAAGAC+TGG 0.621691 4_3:-55370612 None:intergenic
AGCTGTGGAACAGCTAGGAG+TGG 0.623334 4_3:+55370081 Msa0648840:five_prime_UTR
AGAGTAGAAGACAACGTGCA+TGG 0.623986 4_3:-55373307 None:intergenic
AGAGGGAAGTGATCAGTCCA+TGG 0.624850 4_3:+55370482 Msa0648840:five_prime_UTR
GGCATGTGTAAAGCAGATCA+CGG 0.631742 4_3:+55373563 Msa0648840:CDS
GGGAAGTCGAAGAAGTGACC+GGG 0.633060 4_3:-55373605 None:intergenic
TGCTTGCAGTGTCACCATTG+AGG 0.634204 4_3:+55368888 Msa0648840:five_prime_UTR
CAGGAGATTTGTGCAAGCTG+TGG 0.634615 4_3:+55370066 Msa0648840:five_prime_UTR
ACAAGTATATGGTGGTGTAG+GGG 0.636855 4_3:+55370456 Msa0648840:five_prime_UTR
TGGTGAGAATGCCAAAATGA+AGG 0.637260 4_3:-55370691 None:intergenic
ACCGATGGTGTCCATGAGAG+TGG 0.639166 4_3:-55370646 None:intergenic
GTTACCACTGTTGTCAGAGG+TGG 0.641294 4_3:-55373254 None:intergenic
CAAAGGAGACAAGTATATGG+TGG 0.641945 4_3:+55370448 Msa0648840:five_prime_UTR
TTGAAACCTAGCTAGCTCCC+CGG 0.643660 4_3:-55374094 None:intergenic
TCAAGCGAAGAGAAAAGTCA+AGG 0.644275 4_3:+55369339 Msa0648840:five_prime_UTR
ATAGTTACCACTGTTGTCAG+AGG 0.658785 4_3:-55373257 None:intergenic
GGAACAGCTAGGAGTGGACA+AGG 0.659903 4_3:+55370087 Msa0648840:five_prime_UTR
AACTAATTAATCCTTTACCG+GGG 0.665216 4_3:+55374077 Msa0648840:three_prime_UTR
TAGAGAGAGCTACCTGCTGG+TGG 0.667063 4_3:-55370711 None:intergenic
GGGGAGTACTACAATTACAA+CGG 0.686337 4_3:+55368958 Msa0648840:five_prime_UTR
GGTGGTGGAGGAGCTACCGA+TGG 0.688749 4_3:-55370661 None:intergenic
GAGTAAAAGAGATGAATCTG+TGG 0.689938 4_3:+55369249 Msa0648840:five_prime_UTR
GCTGGAGCTTTGAGTCCAAG+TGG 0.690127 4_3:-55373980 None:intergenic
AAGGGTCTAAAATGGTGCAA+TGG 0.690674 4_3:-55370559 None:intergenic
GTTCTCCGTTAGTTACGGCG+AGG 0.691247 4_3:+55369108 Msa0648840:five_prime_UTR
ATGGGTGAACTACAAAGACA+AGG 0.697859 4_3:+55374016 Msa0648840:CDS
CCACTGTTGTCAGAGGTGGT+GGG 0.703169 4_3:-55373250 None:intergenic
CAAAATGAAGGATCTTGAGG+TGG 0.718294 4_3:-55370679 None:intergenic
CCCACCACCTCTGACAACAG+TGG 0.721504 4_3:+55373250 Msa0648840:five_prime_UTR
CCATTGTTAAAAGATGCAGG+TGG 0.735818 4_3:+55369280 Msa0648840:five_prime_UTR
TCTGCTTTACACATGCCATG+GGG 0.759671 4_3:-55373557 None:intergenic
ACAGCTAGGAGTGGACAAGG+CGG 0.769326 4_3:+55370090 Msa0648840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGCATTTTTTTTT+CGG + chr4_3:55369697-55369716 Msa0648840:intron 10.0%
!! ATAAAAACAAATTATTGTTT+AGG + chr4_3:55370894-55370913 Msa0648840:intron 10.0%
!! AAAAAAATTATATATGAGAT+CGG + chr4_3:55370950-55370969 Msa0648840:intron 10.0%
!!! TCTCTTTTAATATTTTTTTT+GGG - chr4_3:55371065-55371084 None:intergenic 10.0%
!!! TTCTCTTTTAATATTTTTTT+TGG - chr4_3:55371066-55371085 None:intergenic 10.0%
!! TCCAAATAATATTTATTTAA+GGG + chr4_3:55371301-55371320 Msa0648840:intron 10.0%
!! TAATTTGATATATAATTAGA+CGG + chr4_3:55371842-55371861 Msa0648840:intron 10.0%
!! ATAATAACTAAATATCATTT+GGG - chr4_3:55372622-55372641 None:intergenic 10.0%
!! TATAATAACTAAATATCATT+TGG - chr4_3:55372623-55372642 None:intergenic 10.0%
!! TTTGTCATATATTATATATA+AGG + chr4_3:55372785-55372804 Msa0648840:intron 10.0%
!!! CAAAAAAAAAAAATTTTTTG+AGG - chr4_3:55372934-55372953 None:intergenic 10.0%
!! TTACTTATATATAAATTGTG+AGG - chr4_3:55369799-55369818 None:intergenic 15.0%
!! TACTGCTATTATTATTAAAT+AGG + chr4_3:55369819-55369838 Msa0648840:intron 15.0%
!! TATACAATGATAGATATATA+GGG - chr4_3:55370761-55370780 None:intergenic 15.0%
!!! TAGGAAAATATACAATTTTT+AGG + chr4_3:55370986-55371005 Msa0648840:intron 15.0%
!! GTCCAAATAATATTTATTTA+AGG + chr4_3:55371300-55371319 Msa0648840:intron 15.0%
!! CCAAATAATATTTATTTAAG+GGG + chr4_3:55371302-55371321 Msa0648840:intron 15.0%
!! CAAATAATATTTATTTAAGG+GGG + chr4_3:55371303-55371322 Msa0648840:intron 15.0%
!! AAATAATATTTATTTAAGGG+GGG + chr4_3:55371304-55371323 Msa0648840:intron 15.0%
!!! TGGATTTATTAAGATTTTAA+AGG + chr4_3:55371478-55371497 Msa0648840:intron 15.0%
!!! AATTGATGTATATATCTTTT+TGG - chr4_3:55371601-55371620 None:intergenic 15.0%
!! AAAAAGATATATACATCAAT+TGG + chr4_3:55371600-55371619 Msa0648840:intron 15.0%
!! TAAAATCTAAATAAATCTTG+TGG - chr4_3:55372195-55372214 None:intergenic 15.0%
!! TTTATTATAAAAAAGTTTGG+TGG - chr4_3:55372237-55372256 None:intergenic 15.0%
!! CAAATGGTATATATAAAAAT+TGG - chr4_3:55372348-55372367 None:intergenic 15.0%
!!! TTGTTTTAAAATCTTTTTCT+AGG - chr4_3:55372849-55372868 None:intergenic 15.0%
!! TTGTTATAAATAAAAATTCG+AGG + chr4_3:55373055-55373074 Msa0648840:intron 15.0%
!!! ATGTGAAACTTTTTAATATA+TGG - chr4_3:55373714-55373733 None:intergenic 15.0%
!!! ATAATAAGATAGTTTTGTGA+AGG - chr4_3:55368721-55368740 None:intergenic 20.0%
!!! ACTAGGTGAATTATTATTTT+TGG - chr4_3:55368793-55368812 None:intergenic 20.0%
!! GAAACTCAATATATAAAACT+AGG - chr4_3:55368810-55368829 None:intergenic 20.0%
!! CCTTCTAATAATAATCAAAT+GGG - chr4_3:55368832-55368851 None:intergenic 20.0%
!! ACCTTCTAATAATAATCAAA+TGG - chr4_3:55368833-55368852 None:intergenic 20.0%
!! TATTAAAAAAATGTTAGCAG+TGG + chr4_3:55369661-55369680 Msa0648840:intron 20.0%
!! TGTTAACAATTCAAATTTAC+CGG + chr4_3:55369723-55369742 Msa0648840:intron 20.0%
!! ATATAAATTGTGAGGATATT+TGG - chr4_3:55369791-55369810 None:intergenic 20.0%
!!! TTTTGTTATTGCAGAAATAT+AGG + chr4_3:55370374-55370393 Msa0648840:intron 20.0%
!! CTATACAATGATAGATATAT+AGG - chr4_3:55370762-55370781 None:intergenic 20.0%
!!! ACGATTAAGATTTTAAACTT+TGG + chr4_3:55370821-55370840 Msa0648840:intron 20.0%
!! GTACAAACTGAAATAATTAA+GGG - chr4_3:55370857-55370876 None:intergenic 20.0%
!! AGTACAAACTGAAATAATTA+AGG - chr4_3:55370858-55370877 None:intergenic 20.0%
!!! GAAAATATACAATTTTTAGG+AGG + chr4_3:55370989-55371008 Msa0648840:intron 20.0%
!!! ATTAAGTCACATCAATTTTT+TGG - chr4_3:55371200-55371219 None:intergenic 20.0%
!! CCCCTTAAATAAATATTATT+TGG - chr4_3:55371305-55371324 None:intergenic 20.0%
!!! AAGATTTTAAAAGACTTTGT+TGG + chr4_3:55371375-55371394 Msa0648840:intron 20.0%
!!! GAATTTTCAAGATTTTAAAG+AGG + chr4_3:55371508-55371527 Msa0648840:intron 20.0%
!!! GAAAATTAGAGAGATTTTAA+TGG - chr4_3:55372074-55372093 None:intergenic 20.0%
!!! TTTTGAATATAACGAACAAA+TGG - chr4_3:55372364-55372383 None:intergenic 20.0%
!!! TTTGTCGACTTTTATATTTT+AGG + chr4_3:55372456-55372475 Msa0648840:intron 20.0%
!!! ATTACATCACTTTACTATTT+TGG + chr4_3:55373282-55373301 Msa0648840:five_prime_UTR 20.0%
!!! TGTCAATCTTATCTTTAAAA+AGG - chr4_3:55373344-55373363 None:intergenic 20.0%
!! TGTGCTATATTTATATATGT+TGG - chr4_3:55373396-55373415 None:intergenic 20.0%
!! TTATTCTCCAAATATAAGTT+TGG + chr4_3:55373466-55373485 Msa0648840:five_prime_UTR 20.0%
!!! TGTTATGTTATTTTCCTTTA+TGG - chr4_3:55373496-55373515 None:intergenic 20.0%
!!! AATTCTCTTTATTTAGTTTC+CGG + chr4_3:55373688-55373707 Msa0648840:intron 20.0%
!!! TTTTAGGTGTTTTTATATTG+GGG - chr4_3:55373820-55373839 None:intergenic 20.0%
!!! CTTTTAGGTGTTTTTATATT+GGG - chr4_3:55373821-55373840 None:intergenic 20.0%
!! AAAACTAATTAATCCTTTAC+CGG + chr4_3:55374075-55374094 Msa0648840:three_prime_UTR 20.0%
!!! TCATTTTTTTTCCTTTCATT+TGG - chr4_3:55374217-55374236 None:intergenic 20.0%
!! AATCGTACATATATACAAAA+TGG - chr4_3:55374270-55374289 None:intergenic 20.0%
!!! ATTTTGTATATATGTACGAT+TGG + chr4_3:55374269-55374288 Msa0648840:three_prime_UTR 20.0%
!!! TATGGGATTAGTAAATAAAA+TGG + chr4_3:55374297-55374316 Msa0648840:three_prime_UTR 20.0%
!!! ATGGGATTAGTAAATAAAAT+GGG + chr4_3:55374298-55374317 Msa0648840:three_prime_UTR 20.0%
! CCCATTTGATTATTATTAGA+AGG + chr4_3:55368829-55368848 Msa0648840:five_prime_UTR 25.0%
! GAATTCAAAGAAAGATTATG+AGG + chr4_3:55369186-55369205 Msa0648840:five_prime_UTR 25.0%
! AGTCAAGGTATACTTAAATA+AGG + chr4_3:55369354-55369373 Msa0648840:intron 25.0%
! CTAAGTGGTTTATCTTAATT+TGG + chr4_3:55369399-55369418 Msa0648840:intron 25.0%
! AATTTGCATATTACATGTCA+TGG + chr4_3:55369908-55369927 Msa0648840:intron 25.0%
! TTCAAGCATATAGAAGAAAA+AGG + chr4_3:55370196-55370215 Msa0648840:intron 25.0%
!!! CACTATTTATCAAGTTTTGA+TGG + chr4_3:55370310-55370329 Msa0648840:intron 25.0%
! TGATAGATATATAGGGAATT+TGG - chr4_3:55370754-55370773 None:intergenic 25.0%
!! TTTTTATATATGAAACCAGC+GGG - chr4_3:55370881-55370900 None:intergenic 25.0%
!! GTTTTTATATATGAAACCAG+CGG - chr4_3:55370882-55370901 None:intergenic 25.0%
!!! GTGCTCAAATATTGTTATTT+GGG - chr4_3:55371034-55371053 None:intergenic 25.0%
!! TGTGCTCAAATATTGTTATT+TGG - chr4_3:55371035-55371054 None:intergenic 25.0%
!! GTATTGGATTGAGATTTTAA+AGG + chr4_3:55371328-55371347 Msa0648840:intron 25.0%
!! TTCTTGATGCAAGATTTTAA+TGG + chr4_3:55371458-55371477 Msa0648840:intron 25.0%
! AAAAAAATATGCACTTGTCA+TGG + chr4_3:55371935-55371954 Msa0648840:intron 25.0%
!!! GATTTTAATGGATTCATTTG+TGG - chr4_3:55372062-55372081 None:intergenic 25.0%
! TTAAATACAACAAAATCCGT+TGG - chr4_3:55372143-55372162 None:intergenic 25.0%
! AACAAGGATTCAATTATATG+TGG - chr4_3:55372910-55372929 None:intergenic 25.0%
!!! AAAAATTTTTTGAGGGAACA+AGG - chr4_3:55372926-55372945 None:intergenic 25.0%
!! GAAACTTTTTAATATATGGC+CGG - chr4_3:55373710-55373729 None:intergenic 25.0%
!!! GCTTTTAGGTGTTTTTATAT+TGG - chr4_3:55373822-55373841 None:intergenic 25.0%
! AAACTAATTAATCCTTTACC+GGG + chr4_3:55374076-55374095 Msa0648840:three_prime_UTR 25.0%
!! TGGGATTAGTAAATAAAATG+GGG + chr4_3:55374299-55374318 Msa0648840:three_prime_UTR 25.0%
! TGTTCAAATAATGGAGAGTT+AGG - chr4_3:55368684-55368703 None:intergenic 30.0%
!! TTTTGGTTGCACATTAGAAA+TGG - chr4_3:55368776-55368795 None:intergenic 30.0%
GCTTTCCAATAAATTTCCTT+CGG - chr4_3:55369002-55369021 None:intergenic 30.0%
AATCCATTGTTAAAAGATGC+AGG + chr4_3:55369277-55369296 Msa0648840:five_prime_UTR 30.0%
!!! AGAGTTTTATTCTTGCTAAG+TGG + chr4_3:55369384-55369403 Msa0648840:intron 30.0%
!!! CAGTACTAACTTTTTAGCTA+AGG + chr4_3:55369457-55369476 Msa0648840:intron 30.0%
! CTGTCTCTATAATTTGTCAA+GGG - chr4_3:55369508-55369527 None:intergenic 30.0%
! TCTGTCTCTATAATTTGTCA+AGG - chr4_3:55369509-55369528 None:intergenic 30.0%
TTTATAGTGCGTTGTATGTT+TGG + chr4_3:55369584-55369603 Msa0648840:intron 30.0%
CCTAATTACGATGAATATAC+CGG - chr4_3:55369745-55369764 None:intergenic 30.0%
AATTAGTGTGTTTATTGTGC+AGG + chr4_3:55370021-55370040 Msa0648840:intron 30.0%
ATAATCTCCAAAATCCTTGA+AGG - chr4_3:55370118-55370137 None:intergenic 30.0%
!! TTCAAGGATTTTGGAGATTA+TGG + chr4_3:55370117-55370136 Msa0648840:five_prime_UTR 30.0%
TGAAATTCATATGTACCTGA+AGG - chr4_3:55370180-55370199 None:intergenic 30.0%
AATCAAAGGAGACAAGTATA+TGG + chr4_3:55370445-55370464 Msa0648840:five_prime_UTR 30.0%
ATACATGTAAGGGTCTAAAA+TGG - chr4_3:55370570-55370589 None:intergenic 30.0%
! ATTTTAGACCCTTACATGTA+TGG + chr4_3:55370569-55370588 Msa0648840:five_prime_UTR 30.0%
! TTTTAGACCCTTACATGTAT+GGG + chr4_3:55370570-55370589 Msa0648840:five_prime_UTR 30.0%
!!! AAGTCACATCAATTTTTTGG+TGG - chr4_3:55371197-55371216 None:intergenic 30.0%
!! TTGGATTGTATTGACTTTGT+GGG + chr4_3:55371394-55371413 Msa0648840:intron 30.0%
TTACAGTTATGAAGATTTCG+AGG + chr4_3:55371891-55371910 Msa0648840:intron 30.0%
GGAACTTATAAAATGTCTCT+TGG - chr4_3:55372101-55372120 None:intergenic 30.0%
AAATCCCAATTGAATACCAA+CGG + chr4_3:55372124-55372143 Msa0648840:intron 30.0%
AAATCCGTTGGTATTCAATT+GGG - chr4_3:55372131-55372150 None:intergenic 30.0%
AAAATCCGTTGGTATTCAAT+TGG - chr4_3:55372132-55372151 None:intergenic 30.0%
GTATTGGATTGTGATTTCAA+AGG - chr4_3:55372275-55372294 None:intergenic 30.0%
AAATTAGAGAAAGTCTTTCG+TGG - chr4_3:55372315-55372334 None:intergenic 30.0%
AGGATTCAATTATATGTGGT+TGG - chr4_3:55372906-55372925 None:intergenic 30.0%
! TTGTCTTCTACTCTGAATTT+TGG + chr4_3:55373316-55373335 Msa0648840:five_prime_UTR 30.0%
TGAATGCATGTATGTATGTA+TGG - chr4_3:55373652-55373671 None:intergenic 30.0%
ACATTATATGAGAGACGATA+AGG + chr4_3:55373730-55373749 Msa0648840:intron 30.0%
CATTATATGAGAGACGATAA+GGG + chr4_3:55373731-55373750 Msa0648840:intron 30.0%
! TTGAAATCTATGGAGCTTTT+AGG - chr4_3:55373836-55373855 None:intergenic 30.0%
TAAAAGCTCCATAGATTTCA+AGG + chr4_3:55373835-55373854 Msa0648840:intron 30.0%
! GAGATGTTTTATCAAAACCA+TGG + chr4_3:55373948-55373967 Msa0648840:CDS 30.0%
AACTAATTAATCCTTTACCG+GGG + chr4_3:55374077-55374096 Msa0648840:three_prime_UTR 30.0%
TATGTACGATTGGTATAGTA+TGG + chr4_3:55374279-55374298 Msa0648840:three_prime_UTR 30.0%
ATGTACGATTGGTATAGTAT+GGG + chr4_3:55374280-55374299 Msa0648840:three_prime_UTR 30.0%
GAGAACGTGTGTTCAAATAA+TGG - chr4_3:55368693-55368712 None:intergenic 35.0%
ACTCAAGCTTAGAAATGGTA+GGG - chr4_3:55368749-55368768 None:intergenic 35.0%
TCTTTGTTAGTGTTCCTCAA+TGG - chr4_3:55368905-55368924 None:intergenic 35.0%
TTGAGGAACACTAACAAAGA+TGG + chr4_3:55368905-55368924 Msa0648840:five_prime_UTR 35.0%
AAAAACTCTCCATCTCTTCT+TGG - chr4_3:55368934-55368953 None:intergenic 35.0%
CCAATAAATTTCCTTCGGAA+AGG - chr4_3:55368997-55369016 None:intergenic 35.0%
CCTTTCCGAAGGAAATTTAT+TGG + chr4_3:55368994-55369013 Msa0648840:five_prime_UTR 35.0%
GGAATCAGAGATGAATTCTT+CGG + chr4_3:55369129-55369148 Msa0648840:five_prime_UTR 35.0%
TGAGGATAAAACAAGCTGTT+CGG + chr4_3:55369204-55369223 Msa0648840:five_prime_UTR 35.0%
GAGTAAAAGAGATGAATCTG+TGG + chr4_3:55369249-55369268 Msa0648840:five_prime_UTR 35.0%
TTAAAAGATGCAGGTGGAAA+AGG + chr4_3:55369286-55369305 Msa0648840:five_prime_UTR 35.0%
CCGGTATATTCATCGTAATT+AGG + chr4_3:55369742-55369761 Msa0648840:intron 35.0%
TTTAGACCCTTACATGTATG+GGG + chr4_3:55370571-55370590 Msa0648840:five_prime_UTR 35.0%
! AAAGACTGGTCCATATTTGA+AGG - chr4_3:55370601-55370620 None:intergenic 35.0%
!!! AATTTGGCTGCTATTTTCAG+TGG - chr4_3:55370738-55370757 None:intergenic 35.0%
!! TTTTAGGAGGAACACTTACT+TGG + chr4_3:55371002-55371021 Msa0648840:intron 35.0%
TTTAGGAGGAACACTTACTT+GGG + chr4_3:55371003-55371022 Msa0648840:intron 35.0%
ACAACACATGGTAATATGCA+AGG + chr4_3:55371149-55371168 Msa0648840:intron 35.0%
!!! ATCAATTTTTTGGTGGTGTC+CGG - chr4_3:55371190-55371209 None:intergenic 35.0%
! TTTATTTAAGGGGGGTGTAT+TGG + chr4_3:55371312-55371331 Msa0648840:intron 35.0%
!! GTTGGATTGTATTGACTTTG+TGG + chr4_3:55371393-55371412 Msa0648840:intron 35.0%
ATGAACGTATAGACTGTTAG+AGG + chr4_3:55371791-55371810 Msa0648840:intron 35.0%
AAGATTTCGAGGATCATGTT+TGG + chr4_3:55371902-55371921 Msa0648840:intron 35.0%
AAGAGTTTGTGTGAGATTGT+TGG + chr4_3:55371997-55372016 Msa0648840:intron 35.0%
GGTATTCAATTGGGATTTCT+AGG - chr4_3:55372122-55372141 None:intergenic 35.0%
TCGATATGTACAAGTACGTT+TGG - chr4_3:55372711-55372730 None:intergenic 35.0%
!!! GTTCTTCTTCTTTTTTGACG+AGG - chr4_3:55372960-55372979 None:intergenic 35.0%
TGGTCAGCCAAACTTATATT+TGG - chr4_3:55373476-55373495 None:intergenic 35.0%
ATAAGTTTGGCTGACCATAA+AGG + chr4_3:55373479-55373498 Msa0648840:five_prime_UTR 35.0%
! GATAAGGGCATGTGTTTATA+AGG + chr4_3:55373746-55373765 Msa0648840:intron 35.0%
TACTCATGCCTTGAAATCTA+TGG - chr4_3:55373846-55373865 None:intergenic 35.0%
TTTCTTCAAGTGCATGATGA+GGG - chr4_3:55374058-55374077 None:intergenic 35.0%
! TTTTCTTCAAGTGCATGATG+AGG - chr4_3:55374059-55374078 None:intergenic 35.0%
AGATGCAATGCAACATCTAA+TGG - chr4_3:55374146-55374165 None:intergenic 35.0%
! GCTTTTAACAGCCAAATGAA+AGG + chr4_3:55374203-55374222 Msa0648840:three_prime_UTR 35.0%
CACTCAAGCTTAGAAATGGT+AGG - chr4_3:55368750-55368769 None:intergenic 40.0%
GTTGCACTCAAGCTTAGAAA+TGG - chr4_3:55368754-55368773 None:intergenic 40.0%
AGATGGAAACCAAGAAGAGA+TGG + chr4_3:55368922-55368941 Msa0648840:five_prime_UTR 40.0%
!! AGAGATGGAGAGTTTTTCGA+TGG + chr4_3:55368937-55368956 Msa0648840:five_prime_UTR 40.0%
!! GAGATGGAGAGTTTTTCGAT+GGG + chr4_3:55368938-55368957 Msa0648840:five_prime_UTR 40.0%
!! AGATGGAGAGTTTTTCGATG+GGG + chr4_3:55368939-55368958 Msa0648840:five_prime_UTR 40.0%
!! GGGGAGTACTACAATTACAA+CGG + chr4_3:55368958-55368977 Msa0648840:five_prime_UTR 40.0%
!! GGGAGTACTACAATTACAAC+GGG + chr4_3:55368959-55368978 Msa0648840:five_prime_UTR 40.0%
AACTTCGACGACTTCTTTGT+TGG + chr4_3:55369025-55369044 Msa0648840:five_prime_UTR 40.0%
! CATCTTACCGGATTTGGTAA+TGG + chr4_3:55369066-55369085 Msa0648840:five_prime_UTR 40.0%
TCTGGATCCATTACCAAATC+CGG - chr4_3:55369076-55369095 None:intergenic 40.0%
GAGGATAAAACAAGCTGTTC+GGG + chr4_3:55369205-55369224 Msa0648840:five_prime_UTR 40.0%
! CCACCTGCATCTTTTAACAA+TGG - chr4_3:55369283-55369302 None:intergenic 40.0%
CCATTGTTAAAAGATGCAGG+TGG + chr4_3:55369280-55369299 Msa0648840:five_prime_UTR 40.0%
! TTGACTTTTCTCTTCGCTTG+AGG - chr4_3:55369340-55369359 None:intergenic 40.0%
TCAAGCGAAGAGAAAAGTCA+AGG + chr4_3:55369339-55369358 Msa0648840:five_prime_UTR 40.0%
GCAACTGTTCAAAATTTCGC+TGG + chr4_3:55369546-55369565 Msa0648840:intron 40.0%
TAGGATCTTCATCTCTAACG+AGG + chr4_3:55369761-55369780 Msa0648840:intron 40.0%
!! AGTGTCTCGTGCACTTTTTA+AGG - chr4_3:55369981-55370000 None:intergenic 40.0%
TAGTGTGTTTATTGTGCAGG+TGG + chr4_3:55370024-55370043 Msa0648840:intron 40.0%
TGTTTATTGTGCAGGTGGAT+TGG + chr4_3:55370029-55370048 Msa0648840:intron 40.0%
GAAGGTGACTAGCAATGTTA+TGG - chr4_3:55370162-55370181 None:intergenic 40.0%
TAACATTGCTAGTCACCTTC+AGG + chr4_3:55370162-55370181 Msa0648840:five_prime_UTR 40.0%
GTACTCGTACGATGTCTTTA+TGG + chr4_3:55370263-55370282 Msa0648840:intron 40.0%
! AAGCAGCAAGTTGGAATCAA+AGG + chr4_3:55370431-55370450 Msa0648840:five_prime_UTR 40.0%
CAAAGGAGACAAGTATATGG+TGG + chr4_3:55370448-55370467 Msa0648840:five_prime_UTR 40.0%
! AGACAAGTATATGGTGGTGT+AGG + chr4_3:55370454-55370473 Msa0648840:five_prime_UTR 40.0%
! GACAAGTATATGGTGGTGTA+GGG + chr4_3:55370455-55370474 Msa0648840:five_prime_UTR 40.0%
! ACAAGTATATGGTGGTGTAG+GGG + chr4_3:55370456-55370475 Msa0648840:five_prime_UTR 40.0%
! AAGGGTCTAAAATGGTGCAA+TGG - chr4_3:55370562-55370581 None:intergenic 40.0%
ATGGGGACATCCTTCAAATA+TGG + chr4_3:55370588-55370607 Msa0648840:five_prime_UTR 40.0%
CAAAATGAAGGATCTTGAGG+TGG - chr4_3:55370682-55370701 None:intergenic 40.0%
! CACCTCAAGATCCTTCATTT+TGG + chr4_3:55370680-55370699 Msa0648840:five_prime_UTR 40.0%
TGCCAAAATGAAGGATCTTG+AGG - chr4_3:55370685-55370704 None:intergenic 40.0%
TGGTGAGAATGCCAAAATGA+AGG - chr4_3:55370694-55370713 None:intergenic 40.0%
!! GATCGGAGAGAGTATTTGAT+AGG + chr4_3:55370967-55370986 Msa0648840:intron 40.0%
ATGGTAATATGCAAGGTCCA+GGG + chr4_3:55371156-55371175 Msa0648840:intron 40.0%
TGGCAGAACAGAAAAAAGTC+TGG + chr4_3:55371955-55371974 Msa0648840:intron 40.0%
GGCAGAACAGAAAAAAGTCT+GGG + chr4_3:55371956-55371975 Msa0648840:intron 40.0%
ATAGTTACCACTGTTGTCAG+AGG - chr4_3:55373260-55373279 None:intergenic 40.0%
AACATGCAGAGACCATCATT+TGG + chr4_3:55373512-55373531 Msa0648840:exon 40.0%
ATCTGCTTTACACATGCCAT+GGG - chr4_3:55373561-55373580 None:intergenic 40.0%
CATGTATGTATGTATGGCGA+AGG - chr4_3:55373646-55373665 None:intergenic 40.0%
! AAGGGCATGTGTTTATAAGG+TGG + chr4_3:55373749-55373768 Msa0648840:intron 40.0%
AGGGCATGTGTTTATAAGGT+GGG + chr4_3:55373750-55373769 Msa0648840:intron 40.0%
ATGGGTGAACTACAAAGACA+AGG + chr4_3:55374016-55374035 Msa0648840:CDS 40.0%
GGATGAGAAATCGTCGAATT+AGG - chr4_3:55374125-55374144 None:intergenic 40.0%
GAAGGTTGAGTACTTGAGTG+TGG + chr4_3:55368847-55368866 Msa0648840:five_prime_UTR 45.0%
ACAATTACAACGGGCGACTT+CGG + chr4_3:55368968-55368987 Msa0648840:five_prime_UTR 45.0%
TTTGTTGGCATCAACGTCGA+TGG + chr4_3:55369040-55369059 Msa0648840:five_prime_UTR 45.0%
TGGAGACATCTTACCGGATT+TGG + chr4_3:55369060-55369079 Msa0648840:five_prime_UTR 45.0%
GAGAACTCAGCAAACATCTC+TGG - chr4_3:55369094-55369113 None:intergenic 45.0%
GCTGAGTTCTCCGTTAGTTA+CGG + chr4_3:55369103-55369122 Msa0648840:five_prime_UTR 45.0%
TGATTCCTCGCCGTAACTAA+CGG - chr4_3:55369116-55369135 None:intergenic 45.0%
AAAACAAGCTGTTCGGGTCA+AGG + chr4_3:55369211-55369230 Msa0648840:five_prime_UTR 45.0%
ACAAATCTCCTGTGCAAGTC+TGG - chr4_3:55370058-55370077 None:intergenic 45.0%
!! AAATGGTGCAATGGTGCCAT+AGG - chr4_3:55370553-55370572 None:intergenic 45.0%
GGATGTCCCCATACATGTAA+GGG - chr4_3:55370580-55370599 None:intergenic 45.0%
AGGATGTCCCCATACATGTA+AGG - chr4_3:55370581-55370600 None:intergenic 45.0%
! ACCAGTCTTTTCTGCACATG+TGG + chr4_3:55370611-55370630 Msa0648840:five_prime_UTR 45.0%
AATGAAGGATCTTGAGGTGG+TGG - chr4_3:55370679-55370698 None:intergenic 45.0%
ATTTCAGTTTGTACTCCCGC+TGG + chr4_3:55370863-55370882 Msa0648840:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr4_3:55371126-55371145 Msa0648840:intron 45.0%
CATGGTAATATGCAAGGTCC+AGG + chr4_3:55371155-55371174 Msa0648840:intron 45.0%
ACAATCCAATACAACCCCCA+AGG + chr4_3:55372283-55372302 Msa0648840:intron 45.0%
TCTTTCGTGGACACAACCTT+GGG - chr4_3:55372302-55372321 None:intergenic 45.0%
CTCCGATAAACGCAATGATC+CGG + chr4_3:55373210-55373229 Msa0648840:five_prime_UTR 45.0%
AGAGTAGAAGACAACGTGCA+TGG - chr4_3:55373310-55373329 None:intergenic 45.0%
GGGATTGGACATCCAAATGA+TGG - chr4_3:55373527-55373546 None:intergenic 45.0%
TCATTTGGATGTCCAATCCC+CGG + chr4_3:55373527-55373546 Msa0648840:CDS 45.0%
TCTGCTTTACACATGCCATG+GGG - chr4_3:55373560-55373579 None:intergenic 45.0%
GATCTGCTTTACACATGCCA+TGG - chr4_3:55373562-55373581 None:intergenic 45.0%
GGCATGTGTAAAGCAGATCA+CGG + chr4_3:55373563-55373582 Msa0648840:CDS 45.0%
!! TCCAGCACTTGATAGCGTAA+TGG + chr4_3:55373997-55374016 Msa0648840:CDS 45.0%
!! CCAGCACTTGATAGCGTAAT+GGG + chr4_3:55373998-55374017 Msa0648840:CDS 45.0%
AATGCTCAAGCATTTGCGCA+TGG - chr4_3:55374245-55374264 None:intergenic 45.0%
!!! TAATAATTAAGATTTTTTTT+TGG + chr4_3:55370788-55370807 Msa0648840:intron 5.0%
!! TAAAGATATATTATATTATA+CGG + chr4_3:55371541-55371560 Msa0648840:intron 5.0%
!!! TTTTTTATTATAAAAAAGTT+TGG - chr4_3:55372240-55372259 None:intergenic 5.0%
!! ATATTTAACTATTAAATTAA+AGG + chr4_3:55372685-55372704 Msa0648840:intron 5.0%
!!! AAAAAAAAAAAATTTTTTGA+GGG - chr4_3:55372933-55372952 None:intergenic 5.0%
TGCTTGCAGTGTCACCATTG+AGG + chr4_3:55368888-55368907 Msa0648840:five_prime_UTR 50.0%
CGTCGATGGAGACATCTTAC+CGG + chr4_3:55369054-55369073 Msa0648840:five_prime_UTR 50.0%
GATGAATTCTTCGGCGTCAC+TGG + chr4_3:55369138-55369157 Msa0648840:five_prime_UTR 50.0%
ATTGGACACCAGACTTGCAC+AGG + chr4_3:55370047-55370066 Msa0648840:five_prime_UTR 50.0%
CAGGAGATTTGTGCAAGCTG+TGG + chr4_3:55370066-55370085 Msa0648840:five_prime_UTR 50.0%
GTGAAGCAGAAGCAGCAAGT+TGG + chr4_3:55370422-55370441 Msa0648840:five_prime_UTR 50.0%
AGAGGGAAGTGATCAGTCCA+TGG + chr4_3:55370482-55370501 Msa0648840:five_prime_UTR 50.0%
GCCACATGTGCAGAAAAGAC+TGG - chr4_3:55370615-55370634 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr4_3:55371125-55371144 Msa0648840:intron 50.0%
!! CAGTTGGTAGGGACAACACA+TGG + chr4_3:55371137-55371156 Msa0648840:intron 50.0%
AAGGTCCAGGGTTCAAACAC+CGG + chr4_3:55371168-55371187 Msa0648840:intron 50.0%
CACAACCTTGGGGGTTGTAT+TGG - chr4_3:55372291-55372310 None:intergenic 50.0%
TTTCGTGGACACAACCTTGG+GGG - chr4_3:55372300-55372319 None:intergenic 50.0%
CTTTCGTGGACACAACCTTG+GGG - chr4_3:55372301-55372320 None:intergenic 50.0%
GTCTTTCGTGGACACAACCT+TGG - chr4_3:55372303-55372322 None:intergenic 50.0%
GGCCGGATCATTGCGTTTAT+CGG - chr4_3:55373215-55373234 None:intergenic 50.0%
ATAAACGCAATGATCCGGCC+AGG + chr4_3:55373215-55373234 Msa0648840:five_prime_UTR 50.0%
GGAAACAATGTGTTCCTGGC+CGG - chr4_3:55373232-55373251 None:intergenic 50.0%
GGTGGGAAACAATGTGTTCC+TGG - chr4_3:55373236-55373255 None:intergenic 50.0%
GTTACCACTGTTGTCAGAGG+TGG - chr4_3:55373257-55373276 None:intergenic 50.0%
CTTTACACATGCCATGGGGT+GGG - chr4_3:55373556-55373575 None:intergenic 50.0%
TGGGAAGTCGAAGAAGTGAC+CGG - chr4_3:55373609-55373628 None:intergenic 50.0%
TCACTTCTTCGACTTCCCAC+CGG + chr4_3:55373610-55373629 Msa0648840:CDS 50.0%
! GAGAGCATAGACGCAGCTAT+TGG + chr4_3:55373926-55373945 Msa0648840:CDS 50.0%
! GCTTTGAGTCCAAGTGGTAG+TGG - chr4_3:55373977-55373996 None:intergenic 50.0%
CCCATTACGCTATCAAGTGC+TGG - chr4_3:55374001-55374020 None:intergenic 50.0%
CTTCAAGTGCATGATGAGGG+TGG - chr4_3:55374055-55374074 None:intergenic 50.0%
TTGAAACCTAGCTAGCTCCC+CGG - chr4_3:55374097-55374116 None:intergenic 50.0%
GACTTCGGAGACCTTTCCGA+AGG + chr4_3:55368983-55369002 Msa0648840:five_prime_UTR 55.0%
GTTCTCCGTTAGTTACGGCG+AGG + chr4_3:55369108-55369127 Msa0648840:five_prime_UTR 55.0%
AAGCTGTTCGGGTCAAGGCT+CGG + chr4_3:55369216-55369235 Msa0648840:five_prime_UTR 55.0%
AAGTGCACGAGACACTCGTC+AGG + chr4_3:55369985-55370004 Msa0648840:intron 55.0%
GTGCAAGCTGTGGAACAGCT+AGG + chr4_3:55370076-55370095 Msa0648840:five_prime_UTR 55.0%
AGCTGTGGAACAGCTAGGAG+TGG + chr4_3:55370081-55370100 Msa0648840:five_prime_UTR 55.0%
GGAACAGCTAGGAGTGGACA+AGG + chr4_3:55370087-55370106 Msa0648840:five_prime_UTR 55.0%
ACAGCTAGGAGTGGACAAGG+CGG + chr4_3:55370090-55370109 Msa0648840:five_prime_UTR 55.0%
! GGCGGTGCCTTCAAGGATTT+TGG + chr4_3:55370108-55370127 Msa0648840:five_prime_UTR 55.0%
! ATGGTGGTGTAGGGGTGAAG+AGG + chr4_3:55370464-55370483 Msa0648840:five_prime_UTR 55.0%
! TGGTGGTGTAGGGGTGAAGA+GGG + chr4_3:55370465-55370484 Msa0648840:five_prime_UTR 55.0%
TAGGAGGAGGAGGAGGATGA+GGG - chr4_3:55370534-55370553 None:intergenic 55.0%
ATAGGAGGAGGAGGAGGATG+AGG - chr4_3:55370535-55370554 None:intergenic 55.0%
TCATCCTCCTCCTCCTCCTA+TGG + chr4_3:55370534-55370553 Msa0648840:five_prime_UTR 55.0%
!! AATGGTGCCATAGGAGGAGG+AGG - chr4_3:55370544-55370563 None:intergenic 55.0%
!! TGCAATGGTGCCATAGGAGG+AGG - chr4_3:55370547-55370566 None:intergenic 55.0%
!! TGGTGCAATGGTGCCATAGG+AGG - chr4_3:55370550-55370569 None:intergenic 55.0%
GCCACTCTCATGGACACCAT+CGG + chr4_3:55370645-55370664 Msa0648840:five_prime_UTR 55.0%
ACCGATGGTGTCCATGAGAG+TGG - chr4_3:55370649-55370668 None:intergenic 55.0%
! GAAGGATCTTGAGGTGGTGG+AGG - chr4_3:55370676-55370695 None:intergenic 55.0%
TTGGCATTCTCACCACCAGC+AGG + chr4_3:55370699-55370718 Msa0648840:five_prime_UTR 55.0%
TAGAGAGAGCTACCTGCTGG+TGG - chr4_3:55370714-55370733 None:intergenic 55.0%
GGTTAGAGAGAGCTACCTGC+TGG - chr4_3:55370717-55370736 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4_3:55371124-55371143 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4_3:55371121-55371140 Msa0648840:intron 55.0%
CCACTGTTGTCAGAGGTGGT+GGG - chr4_3:55373253-55373272 None:intergenic 55.0%
ACCACTGTTGTCAGAGGTGG+TGG - chr4_3:55373254-55373273 None:intergenic 55.0%
GCTTTACACATGCCATGGGG+TGG - chr4_3:55373557-55373576 None:intergenic 55.0%
ATTAGCACCCTTCCTGCTCC+CGG + chr4_3:55373587-55373606 Msa0648840:CDS 55.0%
GGGAAGTCGAAGAAGTGACC+GGG - chr4_3:55373608-55373627 None:intergenic 55.0%
!! CCAAGTGGTAGTGGCAACCA+TGG - chr4_3:55373968-55373987 None:intergenic 55.0%
CCATGGTTGCCACTACCACT+TGG + chr4_3:55373965-55373984 Msa0648840:CDS 55.0%
!! GCTGGAGCTTTGAGTCCAAG+TGG - chr4_3:55373983-55374002 None:intergenic 55.0%
TGGACAAGGCGGTGCCTTCA+AGG + chr4_3:55370101-55370120 Msa0648840:five_prime_UTR 60.0%
!! AAACCCATGGTGGGTGCAGC+TGG - chr4_3:55370508-55370527 None:intergenic 60.0%
TGAGGGGGGAAACCCATGGT+GGG - chr4_3:55370517-55370536 None:intergenic 60.0%
ATGAGGGGGGAAACCCATGG+TGG - chr4_3:55370518-55370537 None:intergenic 60.0%
AGGATGAGGGGGGAAACCCA+TGG - chr4_3:55370521-55370540 None:intergenic 60.0%
AGGAGGAGGAGGAGGATGAG+GGG - chr4_3:55370533-55370552 None:intergenic 60.0%
CATGAGAGTGGCTGCGGTGT+AGG - chr4_3:55370637-55370656 None:intergenic 60.0%
CTACACCGCAGCCACTCTCA+TGG + chr4_3:55370635-55370654 Msa0648840:five_prime_UTR 60.0%
GGTGTCCATGAGAGTGGCTG+CGG - chr4_3:55370643-55370662 None:intergenic 60.0%
GGTGTCCGGTGTTTGAACCC+TGG - chr4_3:55371176-55371195 None:intergenic 60.0%
CCCACCACCTCTGACAACAG+TGG + chr4_3:55373250-55373269 Msa0648840:five_prime_UTR 60.0%
GAAGTGACCGGGAGCAGGAA+GGG - chr4_3:55373597-55373616 None:intergenic 60.0%
AGAAGTGACCGGGAGCAGGA+AGG - chr4_3:55373598-55373617 None:intergenic 60.0%
TCGAAGAAGTGACCGGGAGC+AGG - chr4_3:55373602-55373621 None:intergenic 60.0%
CCTAGCTAGCTCCCCGGTAA+AGG - chr4_3:55374091-55374110 None:intergenic 60.0%
CCTTTACCGGGGAGCTAGCT+AGG + chr4_3:55374088-55374107 Msa0648840:three_prime_UTR 60.0%
!! ATGGTGGGTGCAGCTGGCCA+TGG - chr4_3:55370502-55370521 None:intergenic 65.0%
ATGGCCAGCTGCACCCACCA+TGG + chr4_3:55370501-55370520 Msa0648840:five_prime_UTR 65.0%
TGGCCAGCTGCACCCACCAT+GGG + chr4_3:55370502-55370521 Msa0648840:five_prime_UTR 65.0%
GAGGAGGAGGAGGATGAGGG+GGG - chr4_3:55370531-55370550 None:intergenic 65.0%
GGAGGAGGAGGAGGATGAGG+GGG - chr4_3:55370532-55370551 None:intergenic 65.0%
! GGTGCCATAGGAGGAGGAGG+AGG - chr4_3:55370541-55370560 None:intergenic 65.0%
!! GGTGGTGGAGGAGCTACCGA+TGG - chr4_3:55370664-55370683 None:intergenic 65.0%
ATGCCATGGGGTGGGATGCC+GGG - chr4_3:55373548-55373567 None:intergenic 65.0%
CATGCCATGGGGTGGGATGC+CGG - chr4_3:55373549-55373568 None:intergenic 65.0%
TGGGGTGGGATGCCGGGGAT+TGG - chr4_3:55373542-55373561 None:intergenic 70.0%
ATCCCCGGCATCCCACCCCA+TGG + chr4_3:55373542-55373561 Msa0648840:CDS 70.0%
TGCCATGGGGTGGGATGCCG+GGG - chr4_3:55373547-55373566 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55368641 55374347 55368641 ID=Msa0648840;Name=Msa0648840
chr4_3 mRNA 55368641 55374347 55368641 ID=Msa0648840-mRNA-1;Parent=Msa0648840;Name=Msa0648840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1500|1|1|1|1|0.8|5|275|89
chr4_3 exon 55368641 55369360 55368641 ID=Msa0648840-mRNA-1:exon:14129;Parent=Msa0648840-mRNA-1
chr4_3 exon 55370043 55370183 55370043 ID=Msa0648840-mRNA-1:exon:14130;Parent=Msa0648840-mRNA-1
chr4_3 exon 55370388 55370720 55370388 ID=Msa0648840-mRNA-1:exon:14131;Parent=Msa0648840-mRNA-1
chr4_3 exon 55373209 55373631 55373209 ID=Msa0648840-mRNA-1:exon:14132;Parent=Msa0648840-mRNA-1
chr4_3 exon 55373920 55374347 55373920 ID=Msa0648840-mRNA-1:exon:14133;Parent=Msa0648840-mRNA-1
chr4_3 five_prime_UTR 55368641 55369360 55368641 ID=Msa0648840-mRNA-1:five_prime_utr;Parent=Msa0648840-mRNA-1
chr4_3 five_prime_UTR 55370043 55370183 55370043 ID=Msa0648840-mRNA-1:five_prime_utr;Parent=Msa0648840-mRNA-1
chr4_3 five_prime_UTR 55370388 55370720 55370388 ID=Msa0648840-mRNA-1:five_prime_utr;Parent=Msa0648840-mRNA-1
chr4_3 five_prime_UTR 55373209 55373514 55373209 ID=Msa0648840-mRNA-1:five_prime_utr;Parent=Msa0648840-mRNA-1
chr4_3 CDS 55373515 55373631 55373515 ID=Msa0648840-mRNA-1:cds;Parent=Msa0648840-mRNA-1
chr4_3 CDS 55373920 55374072 55373920 ID=Msa0648840-mRNA-1:cds;Parent=Msa0648840-mRNA-1
chr4_3 three_prime_UTR 55374073 55374347 55374073 ID=Msa0648840-mRNA-1:three_prime_utr;Parent=Msa0648840-mRNA-1
Gene Sequence

>Msa0648840

ATGCAGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>Msa0648840

MQRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT*