AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659400 MtrunA17_Chr8g0384611 88.732 497 55 1 13 509 197 692 0.0 914
Msa0659400 MtrunA17_Chr3g0130541 70.130 231 69 0 278 508 370 600 3.54e-112 345
Msa0659400 MtrunA17_Chr3g0130541 44.720 161 78 4 14 174 229 378 7.34e-31 126
Msa0659400 MtrunA17_Chr8g0384561 66.667 198 50 2 13 208 69 252 9.50e-83 257
Msa0659400 MtrunA17_Chr8g0384581 89.091 110 12 0 400 509 1 110 5.04e-66 208
Msa0659400 MtrunA17_Chr8g0384571 88.350 103 12 0 241 343 1 103 9.50e-58 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659400 AT5G39450.1 54.386 228 98 2 283 508 350 573 3.74e-78 256
Msa0659400 AT5G39480.1 50.215 233 108 3 280 508 330 558 2.42e-69 232
Msa0659400 AT5G39490.1 46.121 232 119 2 280 509 330 557 2.52e-64 219
Msa0659400 AT5G39460.1 49.130 230 104 5 283 508 341 561 1.17e-63 217

Find 171 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAAGTGTTGCTATTATT+TGG 0.150442 4_3:-69793154 None:intergenic
AAAAGCCGCTACCCGAATTT+TGG 0.189280 4_3:+69797202 Msa0659400:five_prime_UTR
ACCAAGTGTATGCTGGTTTA+TGG 0.195342 4_3:+69801789 Msa0659400:CDS
TTGTATTCAGATTGAAAATA+AGG 0.221115 4_3:+69801025 Msa0659400:CDS
TAGATTAGAGGTTCCTAATA+TGG 0.222044 4_3:+69800884 Msa0659400:CDS
TTCTGTTGGACAGTCTGTTT+TGG 0.228363 4_3:+69798898 Msa0659400:intron
TAAATTCTTTATTAGGCTAT+TGG 0.250453 4_3:+69793296 Msa0659400:five_prime_UTR
GGTTTATGGGGCGGTACTTT+TGG 0.253329 4_3:+69801803 Msa0659400:CDS
TCCCTCTTTGTACTTCAAAA+TGG 0.282347 4_3:+69802127 Msa0659400:CDS
GATGCGGTATACTCATGTTT+TGG 0.282924 4_3:+69793561 Msa0659400:five_prime_UTR
TGGTTTGGGATGCATTCTTT+AGG 0.289253 4_3:+69793677 Msa0659400:five_prime_UTR
GCATACACTTGGTCTTCTTT+AGG 0.294855 4_3:-69801779 None:intergenic
GAATATCAGAAAAGTGTTAA+AGG 0.295171 4_3:-69793107 None:intergenic
TTCTTGCTAAATTCTTTATT+AGG 0.305249 4_3:+69793289 Msa0659400:five_prime_UTR
GCTTCCTTTGGAATTGGTTT+GGG 0.305701 4_3:+69793663 Msa0659400:five_prime_UTR
GGTTTGGGATGCATTCTTTA+GGG 0.307058 4_3:+69793678 Msa0659400:five_prime_UTR
TTGGTGGTGGTGCTTTGTTT+TGG 0.307690 4_3:+69793520 Msa0659400:five_prime_UTR
GATGCTTATTAAATTTATAA+AGG 0.310256 4_3:+69797877 Msa0659400:five_prime_UTR
AAATTCTTTATTAGGCTATT+GGG 0.312154 4_3:+69793297 Msa0659400:five_prime_UTR
AATGGCCCAGTTCCCATATT+AGG 0.312411 4_3:-69800897 None:intergenic
TTGAAATGAGTGTTAAAGTT+TGG 0.313532 4_3:+69793364 Msa0659400:five_prime_UTR
GGTGGCTTTAAACATATCTT+TGG 0.314186 4_3:+69801203 Msa0659400:CDS
GACTTGATCCCTCCAAAATT+CGG 0.318399 4_3:-69797214 None:intergenic
GGCTTCCTTTGGAATTGGTT+TGG 0.319839 4_3:+69793662 Msa0659400:five_prime_UTR
TACTAGCCAAGTTAGATTAG+AGG 0.330399 4_3:+69800872 Msa0659400:CDS
TAGTAAACTTTCTTGCAAAA+AGG 0.331608 4_3:-69798473 None:intergenic
CTAGATCTTCGATGGTTACT+TGG 0.335719 4_3:-69801290 None:intergenic
TACAACCTTGGCATGCTTCC+TGG 0.336465 4_3:-69796840 None:intergenic
CACTCACAACATGAATTACT+TGG 0.338053 4_3:+69799244 Msa0659400:CDS
CTTGCAAGTTAAGTCTTTGC+AGG 0.339370 4_3:-69802192 None:intergenic
AGAAAGTGGTTCAGCAGAAA+TGG 0.341229 4_3:+69793473 Msa0659400:five_prime_UTR
CCAAGTGTATGCTGGTTTAT+GGG 0.343323 4_3:+69801790 Msa0659400:CDS
CGTTTCCTTGGGAAACTGAT+AGG 0.346496 4_3:+69802014 Msa0659400:CDS
CACAACACGGCCGCAGGAAC+TGG 0.352037 4_3:+69801572 Msa0659400:CDS
CTTCTTCTGATCCGTTTCCT+TGG 0.352615 4_3:+69802002 Msa0659400:CDS
AATATCAGAAAAGTGTTAAA+GGG 0.354961 4_3:-69793106 None:intergenic
ATGAAGAGAAAAGCAATCTT+AGG 0.355547 4_3:-69793628 None:intergenic
TGCAAGGAATAGGCTTCCTT+TGG 0.360242 4_3:+69793651 Msa0659400:five_prime_UTR
AGTATGTTCAATGGAATTAG+AGG 0.363663 4_3:+69801067 Msa0659400:CDS
TCCACGGCGCTCACGATCTC+TGG 0.364508 4_3:-69797816 None:intergenic
CAGTTATAGACTGGAATAAC+TGG 0.365025 4_3:-69796668 None:intergenic
CAGTTATTCCAGTCTATAAC+TGG 0.365399 4_3:+69796669 Msa0659400:five_prime_UTR
ACAGAATCATCTCTTGATCT+AGG 0.368549 4_3:-69800924 None:intergenic
GAATAGGCTTCCTTTGGAAT+TGG 0.368624 4_3:+69793657 Msa0659400:five_prime_UTR
TTCTTCTGATCCGTTTCCTT+GGG 0.370545 4_3:+69802003 Msa0659400:CDS
AAATATCCAGGAGCAAAATC+TGG 0.380597 4_3:+69802103 Msa0659400:CDS
TGAATTACTTGGGCTATGTT+TGG 0.380851 4_3:+69799255 Msa0659400:CDS
ATGGCGATCTTGCCTTTGTT+TGG 0.382428 4_3:+69802146 Msa0659400:CDS
GAGGTTCCTAATATGGGAAC+TGG 0.384292 4_3:+69800891 Msa0659400:CDS
ATTAGGCTATTGGGTTGGTA+TGG 0.398259 4_3:+69793306 Msa0659400:five_prime_UTR
CGCTATGCATTGCATCCTAA+TGG 0.401483 4_3:+69801947 Msa0659400:CDS
TTCTCTTCATTGCAAGGAAT+AGG 0.401929 4_3:+69793641 Msa0659400:five_prime_UTR
AAGAGCATTCCTTGTTCAAA+TGG 0.407584 4_3:+69800983 Msa0659400:CDS
GTTTGAACATAGTGTTCATC+TGG 0.409473 4_3:-69797500 None:intergenic
ATAAACATTGCTGAACCATT+AGG 0.413798 4_3:-69801962 None:intergenic
AAAACAAAGCGGTCATTTAG+AGG 0.415697 4_3:-69795728 None:intergenic
TGCTTGTACACCATTCTCTT+CGG 0.432521 4_3:-69798428 None:intergenic
CTATCCACAAAGCAATATAA+AGG 0.433889 4_3:-69793253 None:intergenic
CAGCATCACAAAATGATTGC+TGG 0.437173 4_3:+69801488 Msa0659400:CDS
AGATTAGAGGTTCCTAATAT+GGG 0.437762 4_3:+69800885 Msa0659400:CDS
GTTCATCTGGTATACAGTTA+TGG 0.443069 4_3:-69797487 None:intergenic
CCAGTCTATAACTGGAGAAA+AGG 0.444598 4_3:+69796677 Msa0659400:five_prime_UTR
GTGTAGCTGAAGTTGTATAA+AGG 0.444599 4_3:-69796264 None:intergenic
ACTTGATCCCTCCAAAATTC+GGG 0.445648 4_3:-69797213 None:intergenic
GCTTTGCATTCTTTATCTCA+TGG 0.448007 4_3:-69801622 None:intergenic
TTACTAGGACTGCTGCTTTG+AGG 0.451390 4_3:+69798490 Msa0659400:five_prime_UTR
CTGCAACGCAACACGATGGC+AGG 0.458482 4_3:+69801344 Msa0659400:CDS
ACACTATGTTCAAACATTGC+TGG 0.459415 4_3:+69797508 Msa0659400:five_prime_UTR
TTAGAATATGAAGAAGAAAG+TGG 0.462552 4_3:+69793459 Msa0659400:five_prime_UTR
CGATCTTGCCTTTGTTTGGA+AGG 0.465116 4_3:+69802150 Msa0659400:CDS
CAAAGATCTAGTGCAATTGA+TGG 0.467080 4_3:+69801524 Msa0659400:CDS
TTGGGTTGGTATGGATCTGT+TGG 0.468610 4_3:+69793315 Msa0659400:five_prime_UTR
GAAGGTATTGCAAGTGGCTA+TGG 0.470509 4_3:+69802076 Msa0659400:CDS
AATGGAATTAGAGGTTGATC+AGG 0.481928 4_3:+69801076 Msa0659400:CDS
TGCTTTGAGGCTTCTTAACA+TGG 0.485012 4_3:+69798503 Msa0659400:five_prime_UTR
GGCCGAATATGAACAAAAGT+TGG 0.487071 4_3:+69801726 Msa0659400:CDS
GGCTATGGTTTCAAATATCC+AGG 0.487386 4_3:+69802091 Msa0659400:CDS
GCTTGTAAACACATTTAAGC+AGG 0.488155 4_3:-69802284 None:intergenic
TAACTGGAGAAAAGGATCTC+AGG 0.488468 4_3:+69796685 Msa0659400:five_prime_UTR
TTTATAAATTTAATAAGCAT+CGG 0.496105 4_3:-69797875 None:intergenic
CCCATAAACCAGCATACACT+TGG 0.497925 4_3:-69801790 None:intergenic
GTGTCACTATCCTTATTGCT+TGG 0.500008 4_3:-69801140 None:intergenic
TACAGCTTCGCTGACACAAA+AGG 0.500980 4_3:+69796620 Msa0659400:intron
AAGGGACAACAACTTCTCAT+TGG 0.500982 4_3:+69801902 Msa0659400:CDS
GCGCTCACGATCTCTGGAGT+TGG 0.504969 4_3:-69797810 None:intergenic
TCACTATCCTTATTGCTTGG+AGG 0.505487 4_3:-69801137 None:intergenic
ATCGTCCTCCACTACAACCT+TGG 0.509580 4_3:-69796852 None:intergenic
CTATCAGTTTCCCAAGGAAA+CGG 0.510000 4_3:-69802013 None:intergenic
CACCTATCGACAAAACTAGT+TGG 0.511751 4_3:-69796309 None:intergenic
TCCCTCCAAAATTCGGGTAG+CGG 0.515418 4_3:-69797207 None:intergenic
TCTGAGAACTTATAAGTCAC+TGG 0.518003 4_3:-69797845 None:intergenic
TACTTAGTAAAGAAATAAGA+TGG 0.523194 4_3:+69798985 Msa0659400:five_prime_UTR
AGGGAAAGAAGTATGTTCAA+TGG 0.525453 4_3:+69801058 Msa0659400:CDS
GAAAATAAGGAAAATTCTCA+AGG 0.528849 4_3:+69801038 Msa0659400:CDS
TCAAGTTAATGATAGCATAC+AGG 0.530790 4_3:+69794798 Msa0659400:five_prime_UTR
TCTTTATTAGGCTATTGGGT+TGG 0.531267 4_3:+69793301 Msa0659400:five_prime_UTR
TAGGAACCTCTAATCTAACT+TGG 0.531329 4_3:-69800878 None:intergenic
TTGAATTGATTTGAAATGGT+GGG 0.531524 4_3:+69793410 Msa0659400:five_prime_UTR
GGAACTGGAGAGAATGACAT+AGG 0.532645 4_3:+69801587 Msa0659400:CDS
GCCAGGGTTTGTGTTGAATG+AGG 0.535969 4_3:+69794744 Msa0659400:five_prime_UTR
GGGTGAAGCAAGCATGATAG+AGG 0.536814 4_3:+69795670 Msa0659400:five_prime_UTR
TCAGCAGAAATGGAAGAAGA+AGG 0.538184 4_3:+69793483 Msa0659400:five_prime_UTR
AAAGAAGACCAAGTGTATGC+TGG 0.538643 4_3:+69801782 Msa0659400:CDS
GGCTATGTTTGGTTCAAATG+AGG 0.540156 4_3:+69799266 Msa0659400:CDS
ATGGCTCAAATGTATAAGCT+TGG 0.541711 4_3:+69801002 Msa0659400:CDS
CAAGGAAACGGATCAGAAGA+AGG 0.543211 4_3:-69802001 None:intergenic
GCTCTCGTATTGGGAGTCGA+AGG 0.543524 4_3:+69801883 Msa0659400:CDS
ATCAAGAGAAAGAGTCTTGG+TGG 0.546154 4_3:+69801170 Msa0659400:CDS
AAGAGAATGGTGTACAAGCA+AGG 0.546374 4_3:+69798431 Msa0659400:five_prime_UTR
ACAAGAGACGATCAAAGATC+TGG 0.547199 4_3:+69801368 Msa0659400:CDS
TTTGAATTGATTTGAAATGG+TGG 0.548180 4_3:+69793409 Msa0659400:five_prime_UTR
ACTCTGCTTGTATCAGCCAC+TGG 0.557794 4_3:-69798954 None:intergenic
CAAGTGTATGCTGGTTTATG+GGG 0.561849 4_3:+69801791 Msa0659400:CDS
GAAGCATGCCAAGGTTGTAG+TGG 0.562145 4_3:+69796844 Msa0659400:five_prime_UTR
TGGATCTTAGACGTGTCAGC+AGG 0.564469 4_3:-69797467 None:intergenic
ATTGATTTGAAATGGTGGGT+TGG 0.566299 4_3:+69793414 Msa0659400:five_prime_UTR
CAGCAACACAACACGGCCGC+AGG 0.567323 4_3:+69801566 Msa0659400:CDS
TTCAACACAAACCCTGGCCT+AGG 0.569608 4_3:-69794739 None:intergenic
CTCTCGTATTGGGAGTCGAA+GGG 0.570981 4_3:+69801884 Msa0659400:CDS
CATCAATACATCACAACCGC+AGG 0.571677 4_3:+69801266 Msa0659400:CDS
TTGCAAGTTAAGTCTTTGCA+GGG 0.574271 4_3:-69802191 None:intergenic
GCCTCATTCAACACAAACCC+TGG 0.577011 4_3:-69794745 None:intergenic
TGCATCAAGAGAAAGAGTCT+TGG 0.581200 4_3:+69801167 Msa0659400:CDS
ATATCAGAAAAGTGTTAAAG+GGG 0.582431 4_3:-69793105 None:intergenic
AATATTGACAACACTGCCAT+CGG 0.582834 4_3:-69801396 None:intergenic
TGAGTGTTAAGAGTGGAACA+AGG 0.586057 4_3:-69793074 None:intergenic
TTGTCAATAGGAGGCAGAGA+AGG 0.586071 4_3:-69802241 None:intergenic
CGAAGATCTAGTTCAATCGA+TGG 0.587035 4_3:+69801446 Msa0659400:CDS
AACAAAATGCTTATTGCCAG+TGG 0.587980 4_3:+69798938 Msa0659400:five_prime_UTR
ACATTTGAGCCATTTGAACA+AGG 0.588906 4_3:-69800992 None:intergenic
CGATTGAACTAGATCTTCGA+TGG 0.590395 4_3:-69801442 None:intergenic
AAAGATCTAGTGCAATTGAT+GGG 0.592054 4_3:+69801525 Msa0659400:CDS
GCGGGAGAAGGTATTGCAAG+TGG 0.592866 4_3:+69802070 Msa0659400:CDS
GATCAGTGACACATACTGCA+TGG 0.596005 4_3:+69797780 Msa0659400:five_prime_UTR
GTTTGTTGTTTATGCAGATG+CGG 0.596175 4_3:+69793545 Msa0659400:five_prime_UTR
ATCAGTGACACATACTGCAT+GGG 0.597196 4_3:+69797781 Msa0659400:five_prime_UTR
AGAGAATGGTGTACAAGCAA+GGG 0.597758 4_3:+69798432 Msa0659400:five_prime_UTR
CGGTCGAACTAGATCTTCGA+TGG 0.597888 4_3:-69801298 None:intergenic
GAACTGGAGAGAATGACATA+GGG 0.599521 4_3:+69801588 Msa0659400:CDS
GAGATCGTGAGCGCCGTGGA+TGG 0.599731 4_3:+69797819 Msa0659400:five_prime_UTR
GTCATTCTCTCCAGTTCCTG+CGG 0.600499 4_3:-69801582 None:intergenic
TGTAGAGTGAGTGTTAAGAG+TGG 0.600600 4_3:-69793081 None:intergenic
TCTAGATTCCTTCCAAACAA+AGG 0.601462 4_3:-69802158 None:intergenic
TCTTCTTTAGGAACTTGCAA+AGG 0.603983 4_3:-69801767 None:intergenic
ACTCACAACATGAATTACTT+GGG 0.605923 4_3:+69799245 Msa0659400:CDS
TCTCTTGATCTAGGAAACAA+TGG 0.607460 4_3:-69800915 None:intergenic
GCATGCCAAGGTTGTAGTGG+AGG 0.609985 4_3:+69796847 Msa0659400:five_prime_UTR
AATATTGACAGCACTGCCAT+CGG 0.613779 4_3:-69801318 None:intergenic
TTTGACCAGGAAGCATGCCA+AGG 0.618611 4_3:+69796835 Msa0659400:five_prime_UTR
AAAATAAGGAAAATTCTCAA+GGG 0.625181 4_3:+69801039 Msa0659400:CDS
AGACTGAATACCGAAGAGAA+TGG 0.627600 4_3:+69798418 Msa0659400:five_prime_UTR
CGAAGATCTAGTTCGACCGA+TGG 0.627815 4_3:+69801302 Msa0659400:CDS
GTGTATGCTGGTTTATGGGG+CGG 0.628467 4_3:+69801794 Msa0659400:CDS
TGCAACGCAACACGATGGCA+GGG 0.630900 4_3:+69801345 Msa0659400:CDS
AAGTCACTGGATGCCATCCA+CGG 0.632825 4_3:-69797832 None:intergenic
GCATCCCAAACCAATTCCAA+AGG 0.633005 4_3:-69793667 None:intergenic
CAAAGATCTGGTACAACCGA+TGG 0.633916 4_3:+69801380 Msa0659400:CDS
AGGTTCCTAATATGGGAACT+GGG 0.633956 4_3:+69800892 Msa0659400:CDS
TCCAGAGATCGTGAGCGCCG+TGG 0.637645 4_3:+69797815 Msa0659400:five_prime_UTR
GAGTGAGACATTGTTTATGT+CGG 0.638091 4_3:-69799226 None:intergenic
ATGTCTAAGTAAAACGCGCT+CGG 0.644676 4_3:-69795693 None:intergenic
GAGTTCCTATCAGTTTCCCA+AGG 0.655964 4_3:-69802019 None:intergenic
TATTGATCAGCAACACAACA+CGG 0.656491 4_3:+69801559 Msa0659400:CDS
TTGGATCTTCTACTTCTGAG+TGG 0.657871 4_3:+69793334 Msa0659400:five_prime_UTR
TCGATGGTTACTTGGCCCTG+CGG 0.661597 4_3:-69801282 None:intergenic
ATCAATACATCACAACCGCA+GGG 0.666747 4_3:+69801267 Msa0659400:CDS
AGATCTAGTTCAATCGATGG+AGG 0.682974 4_3:+69801449 Msa0659400:CDS
TATACCCTCACCTATCTGAG+AGG 0.685286 4_3:-69795751 None:intergenic
TGATCTGCAACGCAACACGA+TGG 0.698856 4_3:+69801340 Msa0659400:CDS
AGCTTCGCTGACACAAAAGG+AGG 0.705360 4_3:+69796623 Msa0659400:intron
TATCTGAGAGGAAAACAAAG+CGG 0.756541 4_3:-69795739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAAACAAAACAA+GGG - chr4_3:69797693-69797712 None:intergenic 10.0%
!! AAAAAAATTAAAACAAAACA+AGG - chr4_3:69797694-69797713 None:intergenic 10.0%
!! TTTATAAATTTAATAAGCAT+CGG - chr4_3:69797878-69797897 None:intergenic 10.0%
!!! TAATAGTAGTTTTTACTTTT+TGG + chr4_3:69794199-69794218 Msa0659400:intron 15.0%
!!! TTGAAATAATCTCATTTTAT+CGG + chr4_3:69795490-69795509 Msa0659400:intron 15.0%
!! TATATAATGATTGAAGTTTA+TGG - chr4_3:69795790-69795809 None:intergenic 15.0%
!! ATTTAACAAAACTAATTGTT+GGG - chr4_3:69796492-69796511 None:intergenic 15.0%
!! TATTTAACAAAACTAATTGT+TGG - chr4_3:69796493-69796512 None:intergenic 15.0%
!! AAATGAATAAATAACTACAA+AGG - chr4_3:69796564-69796583 None:intergenic 15.0%
!! CAAATAATAAATGAAGTAAA+AGG - chr4_3:69797022-69797041 None:intergenic 15.0%
!!! TTGGATTTTATAACATTTAA+TGG - chr4_3:69797082-69797101 None:intergenic 15.0%
!! GATGCTTATTAAATTTATAA+AGG + chr4_3:69797877-69797896 Msa0659400:five_prime_UTR 15.0%
!!! TAATTAACATTTTGTTAGAA+TGG + chr4_3:69798013-69798032 Msa0659400:intron 15.0%
!! TATATAAACTAATAAAAGCA+AGG + chr4_3:69798108-69798127 Msa0659400:intron 15.0%
!!! ATTAAGATTCAGATTTTATT+AGG - chr4_3:69798180-69798199 None:intergenic 15.0%
!!! TTAGCTTTCAAATATTTTTA+CGG + chr4_3:69798565-69798584 Msa0659400:intron 15.0%
!! TTAAGTTATTTATCAAAACA+AGG + chr4_3:69798843-69798862 Msa0659400:intron 15.0%
!!! ACTATTATTTTCTATAAAGA+GGG - chr4_3:69799192-69799211 None:intergenic 15.0%
!!! AACTATTATTTTCTATAAAG+AGG - chr4_3:69799193-69799212 None:intergenic 15.0%
!!! AAAAACATCAGTTATTTTAT+AGG + chr4_3:69799583-69799602 Msa0659400:intron 15.0%
!!! TTTTATAGGTATTTTTTTGA+AGG + chr4_3:69799597-69799616 Msa0659400:intron 15.0%
!! TATAAACTTTGAATAATTGA+AGG - chr4_3:69799974-69799993 None:intergenic 15.0%
!! AAATATGAAAAATTGTCAAT+AGG - chr4_3:69802256-69802275 None:intergenic 15.0%
!!! AATATCAGAAAAGTGTTAAA+GGG - chr4_3:69793109-69793128 None:intergenic 20.0%
!! TTCTTGCTAAATTCTTTATT+AGG + chr4_3:69793289-69793308 Msa0659400:five_prime_UTR 20.0%
!! TAAATTCTTTATTAGGCTAT+TGG + chr4_3:69793296-69793315 Msa0659400:five_prime_UTR 20.0%
!! AAATTCTTTATTAGGCTATT+GGG + chr4_3:69793297-69793316 Msa0659400:five_prime_UTR 20.0%
!!! TTTTGTTTCTATTTGTGTTT+TGG + chr4_3:69793728-69793747 Msa0659400:intron 20.0%
!!! ATGTTAGTGGTTATTTTATT+AGG + chr4_3:69793965-69793984 Msa0659400:intron 20.0%
!!! TGTTAGTGGTTATTTTATTA+GGG + chr4_3:69793966-69793985 Msa0659400:intron 20.0%
!!! AAATGAAATTTGTTAGTAGA+AGG + chr4_3:69793991-69794010 Msa0659400:intron 20.0%
!!! TTTCTCTTTATAGTTTTTCT+AGG - chr4_3:69794934-69794953 None:intergenic 20.0%
!! AACTATAAAGAGAAACTATT+AGG + chr4_3:69794939-69794958 Msa0659400:intron 20.0%
!! GATAGAAATAAGAAACTATT+TGG + chr4_3:69794986-69795005 Msa0659400:intron 20.0%
!! AACTATTTGGTAGAATATTA+TGG + chr4_3:69794999-69795018 Msa0659400:intron 20.0%
!!! TTCTTTTGATGTTTTAAACA+TGG - chr4_3:69795558-69795577 None:intergenic 20.0%
!! GGTTTCAAAAAAATTTAGTT+TGG - chr4_3:69795977-69795996 None:intergenic 20.0%
!!! TTGCAAAATTTTTGAAACAT+TGG - chr4_3:69796887-69796906 None:intergenic 20.0%
!!! AATGTTTCAAAAATTTTGCA+AGG + chr4_3:69796886-69796905 Msa0659400:five_prime_UTR 20.0%
!!! CAGAATTTATGGTTTTATTA+AGG - chr4_3:69797325-69797344 None:intergenic 20.0%
!! TTCAATATTTCATTCTGAAT+TGG + chr4_3:69797362-69797381 Msa0659400:intron 20.0%
!! TTTCATTCTGTGATAATAAT+AGG + chr4_3:69797948-69797967 Msa0659400:intron 20.0%
!! TTCATTCTGTGATAATAATA+GGG + chr4_3:69797949-69797968 Msa0659400:intron 20.0%
!! AATAATAGGGTTATCATTAT+AGG + chr4_3:69797962-69797981 Msa0659400:intron 20.0%
!!! AGTTTGATGATTTTTTTTGT+AGG + chr4_3:69798374-69798393 Msa0659400:intron 20.0%
!! CATAAAATAAGTAACAATCT+CGG - chr4_3:69798875-69798894 None:intergenic 20.0%
!!! CTTATTTTATGATTTTCTGT+TGG + chr4_3:69798884-69798903 Msa0659400:intron 20.0%
!! TACTTAGTAAAGAAATAAGA+TGG + chr4_3:69798985-69799004 Msa0659400:five_prime_UTR 20.0%
!! TTGTGATATATATGTAGATA+TGG + chr4_3:69799390-69799409 Msa0659400:intron 20.0%
!!! TATAATTTGTCTAAGAAATG+AGG + chr4_3:69799493-69799512 Msa0659400:intron 20.0%
!! TAAACTATAACATGAGAAAA+TGG - chr4_3:69799805-69799824 None:intergenic 20.0%
!! AAAAAATGAACTATAAGTGT+TGG - chr4_3:69800182-69800201 None:intergenic 20.0%
!!! TCTAATATGTTTTTTCTTCA+TGG + chr4_3:69800678-69800697 Msa0659400:intron 20.0%
!!! TGTAAATTTTCAGAAAGATT+TGG + chr4_3:69800944-69800963 Msa0659400:CDS 20.0%
!! TTGTATTCAGATTGAAAATA+AGG + chr4_3:69801025-69801044 Msa0659400:CDS 20.0%
!! AAAATAAGGAAAATTCTCAA+GGG + chr4_3:69801039-69801058 Msa0659400:CDS 20.0%
!!! ATATCAGAAAAGTGTTAAAG+GGG - chr4_3:69793108-69793127 None:intergenic 25.0%
!!! GAATATCAGAAAAGTGTTAA+AGG - chr4_3:69793110-69793129 None:intergenic 25.0%
!! TTTTCCTTTATATTGCTTTG+TGG + chr4_3:69793249-69793268 Msa0659400:five_prime_UTR 25.0%
! TTGAAATGAGTGTTAAAGTT+TGG + chr4_3:69793364-69793383 Msa0659400:five_prime_UTR 25.0%
!!! GCTTTTGAATTGATTTGAAA+TGG + chr4_3:69793406-69793425 Msa0659400:five_prime_UTR 25.0%
!!! TTTGAATTGATTTGAAATGG+TGG + chr4_3:69793409-69793428 Msa0659400:five_prime_UTR 25.0%
!!! TTGAATTGATTTGAAATGGT+GGG + chr4_3:69793410-69793429 Msa0659400:five_prime_UTR 25.0%
! TTAGAATATGAAGAAGAAAG+TGG + chr4_3:69793459-69793478 Msa0659400:five_prime_UTR 25.0%
!!! GTTGATGTTACCTTTTTTAT+AGG + chr4_3:69793939-69793958 Msa0659400:intron 25.0%
! CTAACATTTGCCTATAAAAA+AGG - chr4_3:69793952-69793971 None:intergenic 25.0%
!! TTTTTATAGGCAAATGTTAG+TGG + chr4_3:69793952-69793971 Msa0659400:intron 25.0%
!!! GTTAGTGGTTATTTTATTAG+GGG + chr4_3:69793967-69793986 Msa0659400:intron 25.0%
!!! TTAGTGGTTATTTTATTAGG+GGG + chr4_3:69793968-69793987 Msa0659400:intron 25.0%
! GACATAACTGTGTATTTAAA+AGG - chr4_3:69794274-69794293 None:intergenic 25.0%
! TTAAAAACTAGCTATCAAGA+GGG - chr4_3:69794359-69794378 None:intergenic 25.0%
! AAATCATTATTCCAAAGAAG+AGG - chr4_3:69794416-69794435 None:intergenic 25.0%
!! AACATTTGTATTGCATTTTC+AGG + chr4_3:69794684-69794703 Msa0659400:intron 25.0%
!! ACATTTGTATTGCATTTTCA+GGG + chr4_3:69794685-69794704 Msa0659400:intron 25.0%
! AATAAGCTGATAACAACTTA+GGG - chr4_3:69795186-69795205 None:intergenic 25.0%
! AAATAAGCTGATAACAACTT+AGG - chr4_3:69795187-69795206 None:intergenic 25.0%
! AAGCTCTTCTGTATAATTTA+TGG + chr4_3:69795211-69795230 Msa0659400:intron 25.0%
! ATTAATCTGTTTATCCAAAC+AGG + chr4_3:69795317-69795336 Msa0659400:intron 25.0%
! TTAATCTGTTTATCCAAACA+GGG + chr4_3:69795318-69795337 Msa0659400:intron 25.0%
! AGACTATAAAACTTCATAGT+TGG - chr4_3:69795383-69795402 None:intergenic 25.0%
! CATGTGATAAATAAACACAT+AGG - chr4_3:69795414-69795433 None:intergenic 25.0%
! CTATGTGTTTATTTATCACA+TGG + chr4_3:69795412-69795431 Msa0659400:intron 25.0%
!! ATGTTGACTAAATATCATGA+AGG - chr4_3:69795629-69795648 None:intergenic 25.0%
! ACTTTATGAACAATTCAGTT+TGG - chr4_3:69795865-69795884 None:intergenic 25.0%
! ACTGAATTGTTCATAAAGTT+TGG + chr4_3:69795866-69795885 Msa0659400:intron 25.0%
!!! TTCTAATATTCGATTTGGTT+CGG - chr4_3:69796041-69796060 None:intergenic 25.0%
!! AACAGTTCTAATATTCGATT+TGG - chr4_3:69796046-69796065 None:intergenic 25.0%
!!! TAGTTATCAGTTTTGTTTCA+CGG - chr4_3:69796095-69796114 None:intergenic 25.0%
! TGAAACAAAACTGATAACTA+GGG + chr4_3:69796095-69796114 Msa0659400:intron 25.0%
! CAATCAACTGAAATATAGTA+AGG - chr4_3:69796224-69796243 None:intergenic 25.0%
! AGATTAATGTCGTGTATATA+TGG - chr4_3:69796385-69796404 None:intergenic 25.0%
!! ATAAAAAGAGAGGTATAAGA+TGG - chr4_3:69796793-69796812 None:intergenic 25.0%
! AGAAGAATTCATAAAAAGAG+AGG - chr4_3:69796803-69796822 None:intergenic 25.0%
! TTGAGACACATAATATAAGA+AGG - chr4_3:69796920-69796939 None:intergenic 25.0%
! ACAAATACTAAATGGAAGAA+AGG - chr4_3:69797105-69797124 None:intergenic 25.0%
! TGGCTTAAACAAATACTAAA+TGG - chr4_3:69797113-69797132 None:intergenic 25.0%
!! ATTTTTCTGAGCAGAATTTA+TGG - chr4_3:69797336-69797355 None:intergenic 25.0%
! ATTGGTACATGATGTTAATT+AGG + chr4_3:69797380-69797399 Msa0659400:intron 25.0%
! TATATATGCTGATATGTACT+AGG - chr4_3:69798094-69798113 None:intergenic 25.0%
!!! TAGTACAAAGTCTTGTTAAA+TGG + chr4_3:69798298-69798317 Msa0659400:intron 25.0%
!! CATATTTTCTTTCATCAAAG+TGG - chr4_3:69798350-69798369 None:intergenic 25.0%
! TAGTAAACTTTCTTGCAAAA+AGG - chr4_3:69798476-69798495 None:intergenic 25.0%
!! TTTTTGCAAGAAAGTTTACT+AGG + chr4_3:69798475-69798494 Msa0659400:five_prime_UTR 25.0%
! ATGGTAAGTTCATATATCAT+AGG + chr4_3:69798522-69798541 Msa0659400:intron 25.0%
! TGGTAAGTTCATATATCATA+GGG + chr4_3:69798523-69798542 Msa0659400:intron 25.0%
!!! CAAATATTTTTACGGTAAAC+TGG + chr4_3:69798573-69798592 Msa0659400:intron 25.0%
!! TTTAGTTTCTTCAGTTTGAT+TGG + chr4_3:69798603-69798622 Msa0659400:intron 25.0%
!!! TATTGTCTTTACTTTTGTTC+AGG - chr4_3:69799421-69799440 None:intergenic 25.0%
! AGACAATACATTAAAACACT+TGG + chr4_3:69799433-69799452 Msa0659400:intron 25.0%
! AACAATACAACGTAAGAAAT+GGG - chr4_3:69799901-69799920 None:intergenic 25.0%
! GATGTAATAAAAAAGTGAAG+TGG - chr4_3:69800037-69800056 None:intergenic 25.0%
! TCATACATTAAATAACTCCT+AGG + chr4_3:69800125-69800144 Msa0659400:intron 25.0%
! CTAAAAATATACACATACCT+AGG - chr4_3:69800145-69800164 None:intergenic 25.0%
!!! ATATGTTTTTTCTTCATGGA+AGG + chr4_3:69800682-69800701 Msa0659400:intron 25.0%
!!! TATGTTTTTTCTTCATGGAA+GGG + chr4_3:69800683-69800702 Msa0659400:intron 25.0%
! TAGGAAACAAGATAATAATG+AGG + chr4_3:69800791-69800810 Msa0659400:intron 25.0%
! GAAAATAAGGAAAATTCTCA+AGG + chr4_3:69801038-69801057 Msa0659400:CDS 25.0%
!! AACCAACTTTTGTTCATATT+CGG - chr4_3:69801731-69801750 None:intergenic 25.0%
!!! AGAAAGAATAAAGCCTTTTT+TGG - chr4_3:69801860-69801879 None:intergenic 25.0%
! TCTCATTGGAACAAAAATAT+TGG + chr4_3:69801916-69801935 Msa0659400:CDS 25.0%
! ATTGGAACAAAAATATTGGA+AGG + chr4_3:69801920-69801939 Msa0659400:CDS 25.0%
! TATGAAAAATTGTCAATAGG+AGG - chr4_3:69802253-69802272 None:intergenic 25.0%
!! GTGAAAGTGTTGCTATTATT+TGG - chr4_3:69793157-69793176 None:intergenic 30.0%
CTATCCACAAAGCAATATAA+AGG - chr4_3:69793256-69793275 None:intergenic 30.0%
!!! GGTTGGTTTTAGATTCAAAA+GGG + chr4_3:69793431-69793450 Msa0659400:five_prime_UTR 30.0%
!! GAAGGTTTTTGCTTTGATTT+TGG + chr4_3:69793501-69793520 Msa0659400:five_prime_UTR 30.0%
ATGAAGAGAAAAGCAATCTT+AGG - chr4_3:69793631-69793650 None:intergenic 30.0%
GTCTGGAAAAAGAAACATAT+AGG - chr4_3:69793870-69793889 None:intergenic 30.0%
AAATACACAGTTATGTCCTT+TGG + chr4_3:69794277-69794296 Msa0659400:intron 30.0%
AATACACAGTTATGTCCTTT+GGG + chr4_3:69794278-69794297 Msa0659400:intron 30.0%
TGCTTGATTGAGTATTTAAG+TGG + chr4_3:69794323-69794342 Msa0659400:intron 30.0%
CTTAAAAACTAGCTATCAAG+AGG - chr4_3:69794360-69794379 None:intergenic 30.0%
ATACTTATCATCCTCTTCTT+TGG + chr4_3:69794402-69794421 Msa0659400:intron 30.0%
AACACATGGTCAATAAGTTA+TGG - chr4_3:69794499-69794518 None:intergenic 30.0%
TTCCACAATAATTTAGCCAA+AGG - chr4_3:69794528-69794547 None:intergenic 30.0%
TCAAGTTAATGATAGCATAC+AGG + chr4_3:69794798-69794817 Msa0659400:five_prime_UTR 30.0%
TTATGTTTCAAAGAGAGAAG+AGG - chr4_3:69794826-69794845 None:intergenic 30.0%
CATAAGATAGTAAATGGACA+TGG - chr4_3:69794867-69794886 None:intergenic 30.0%
CCAACACATAAGATAGTAAA+TGG - chr4_3:69794873-69794892 None:intergenic 30.0%
CCATTTACTATCTTATGTGT+TGG + chr4_3:69794870-69794889 Msa0659400:intron 30.0%
ATAAGCTGTTATAGTTGACT+AGG + chr4_3:69794898-69794917 Msa0659400:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr4_3:69794964-69794983 Msa0659400:intron 30.0%
! TCAAATAAGTCGATTCAAAC+AGG - chr4_3:69795095-69795114 None:intergenic 30.0%
AAGTCGAACTTCTTTCATAT+AGG - chr4_3:69795250-69795269 None:intergenic 30.0%
TAATCTGTTTATCCAAACAG+GGG + chr4_3:69795319-69795338 Msa0659400:intron 30.0%
TAATGTTACATTCCTTTCCT+TGG + chr4_3:69795344-69795363 Msa0659400:intron 30.0%
! TGATCTTTTTGCAGATAGAT+TGG + chr4_3:69795648-69795667 Msa0659400:intron 30.0%
! GATCTTTTTGCAGATAGATT+GGG + chr4_3:69795649-69795668 Msa0659400:intron 30.0%
! ATCTTTTTGCAGATAGATTG+GGG + chr4_3:69795650-69795669 Msa0659400:intron 30.0%
! AAACCAAACGATTCTTTTTG+AGG + chr4_3:69795992-69796011 Msa0659400:intron 30.0%
GAAAAAACAAAAAACTGAGC+TGG + chr4_3:69796068-69796087 Msa0659400:intron 30.0%
GTGAAACAAAACTGATAACT+AGG + chr4_3:69796094-69796113 Msa0659400:intron 30.0%
CCATATAATTAAGCAACGTA+TGG - chr4_3:69796156-69796175 None:intergenic 30.0%
CCATACGTTGCTTAATTATA+TGG + chr4_3:69796153-69796172 Msa0659400:intron 30.0%
AGGTATAAGATGGTAATCTT+TGG - chr4_3:69796783-69796802 None:intergenic 30.0%
! TTTTATGAATTCTTCTGCAG+TGG + chr4_3:69796807-69796826 Msa0659400:intron 30.0%
TTTATGAATTCTTCTGCAGT+GGG + chr4_3:69796808-69796827 Msa0659400:intron 30.0%
AGACACATAATATAAGAAGG+AGG - chr4_3:69796917-69796936 None:intergenic 30.0%
AAAACCATGAGAGTTTATGA+TGG - chr4_3:69797046-69797065 None:intergenic 30.0%
ATACTAAATGGAAGAAAGGT+TGG - chr4_3:69797101-69797120 None:intergenic 30.0%
ATGATGTTAATTAGGTTCCT+AGG + chr4_3:69797388-69797407 Msa0659400:intron 30.0%
CATGTGTTCATATAATTCCT+AGG - chr4_3:69797408-69797427 None:intergenic 30.0%
CTTGAAAGAAATGCAATGAA+AGG - chr4_3:69797551-69797570 None:intergenic 30.0%
!! GAATGGTACTTGATAATGAT+AGG + chr4_3:69798030-69798049 Msa0659400:intron 30.0%
! AAAAGCAAGGTATGAGATTT+TGG + chr4_3:69798121-69798140 Msa0659400:intron 30.0%
! ATTCAGATTTTATTAGGACG+AGG - chr4_3:69798174-69798193 None:intergenic 30.0%
ATCTTTCATTAGTTGACTGA+TGG - chr4_3:69798211-69798230 None:intergenic 30.0%
!! TACAAAGTCTTGTTAAATGG+CGG + chr4_3:69798301-69798320 Msa0659400:intron 30.0%
! GTTTATTTGAGTTTATCGAC+TGG + chr4_3:69798625-69798644 Msa0659400:intron 30.0%
AAAGTCAAACTGTGTTTCAT+AGG - chr4_3:69798749-69798768 None:intergenic 30.0%
ACTCACAACATGAATTACTT+GGG + chr4_3:69799245-69799264 Msa0659400:CDS 30.0%
! TCACAAAACAAAAGCATAGA+GGG - chr4_3:69799376-69799395 None:intergenic 30.0%
! ATCACAAAACAAAAGCATAG+AGG - chr4_3:69799377-69799396 None:intergenic 30.0%
TGGCAAAATTAGTGAAAATG+AGG + chr4_3:69799453-69799472 Msa0659400:intron 30.0%
CAACAATACAACGTAAGAAA+TGG - chr4_3:69799902-69799921 None:intergenic 30.0%
GTAATAAAAAAGTGAAGTGG+AGG - chr4_3:69800034-69800053 None:intergenic 30.0%
TATGATATTGCAGACATTTC+AGG - chr4_3:69800110-69800129 None:intergenic 30.0%
CTAAGATTGAAAACTTCTCT+GGG - chr4_3:69800321-69800340 None:intergenic 30.0%
ACTAAGATTGAAAACTTCTC+TGG - chr4_3:69800322-69800341 None:intergenic 30.0%
TTAAACCATTGCTTGGTATT+TGG + chr4_3:69800493-69800512 Msa0659400:intron 30.0%
TAAACCATTGCTTGGTATTT+GGG + chr4_3:69800494-69800513 Msa0659400:intron 30.0%
TAAACAAGATTACCAAGTTC+AGG - chr4_3:69800531-69800550 None:intergenic 30.0%
! AATCTTGTTTATGTAATGCC+AGG + chr4_3:69800540-69800559 Msa0659400:intron 30.0%
! TTGCAATTTATTGTTGCTTG+AGG + chr4_3:69800761-69800780 Msa0659400:intron 30.0%
! ATGAGGTAATGATTCCTTTT+AGG + chr4_3:69800808-69800827 Msa0659400:intron 30.0%
TAGATTAGAGGTTCCTAATA+TGG + chr4_3:69800884-69800903 Msa0659400:CDS 30.0%
AGATTAGAGGTTCCTAATAT+GGG + chr4_3:69800885-69800904 Msa0659400:CDS 30.0%
AGTATGTTCAATGGAATTAG+AGG + chr4_3:69801067-69801086 Msa0659400:CDS 30.0%
AAAGATCTAGTGCAATTGAT+GGG + chr4_3:69801525-69801544 Msa0659400:CDS 30.0%
! GCAAAATTATCATCTTTTCG+AGG + chr4_3:69801701-69801720 Msa0659400:CDS 30.0%
!! AATTATCATCTTTTCGAGGT+TGG + chr4_3:69801705-69801724 Msa0659400:CDS 30.0%
!! TTTTGAGAAGGTTTTTCATG+AGG - chr4_3:69801833-69801852 None:intergenic 30.0%
!!! TTTTTTGGCTTGTTTTGAGA+AGG - chr4_3:69801845-69801864 None:intergenic 30.0%
TTCTCAAAACAAGCCAAAAA+AGG + chr4_3:69801844-69801863 Msa0659400:CDS 30.0%
ATAAACATTGCTGAACCATT+AGG - chr4_3:69801965-69801984 None:intergenic 30.0%
! GAATATTGAACATGCTTTTG+CGG + chr4_3:69802051-69802070 Msa0659400:CDS 30.0%
! AATATTGAACATGCTTTTGC+GGG + chr4_3:69802052-69802071 Msa0659400:CDS 30.0%
!! TTGCAAGAACTTTTGAAGAA+AGG + chr4_3:69802208-69802227 Msa0659400:CDS 30.0%
!! AACTTTTGAAGAAAGGAAGA+AGG + chr4_3:69802215-69802234 Msa0659400:CDS 30.0%
TCTTTATTAGGCTATTGGGT+TGG + chr4_3:69793301-69793320 Msa0659400:five_prime_UTR 35.0%
!! ATTGATTTGAAATGGTGGGT+TGG + chr4_3:69793414-69793433 Msa0659400:five_prime_UTR 35.0%
!!! GGGTTGGTTTTAGATTCAAA+AGG + chr4_3:69793430-69793449 Msa0659400:five_prime_UTR 35.0%
!! GGTTTTTGCTTTGATTTTGG+TGG + chr4_3:69793504-69793523 Msa0659400:five_prime_UTR 35.0%
!! TTTTGCTTTGATTTTGGTGG+TGG + chr4_3:69793507-69793526 Msa0659400:five_prime_UTR 35.0%
!! GTTTGTTGTTTATGCAGATG+CGG + chr4_3:69793545-69793564 Msa0659400:five_prime_UTR 35.0%
! ATGCGGTATACTCATGTTTT+GGG + chr4_3:69793562-69793581 Msa0659400:five_prime_UTR 35.0%
!! TTGCTTTTCTCTTCATTGCA+AGG + chr4_3:69793635-69793654 Msa0659400:five_prime_UTR 35.0%
TTCTCTTCATTGCAAGGAAT+AGG + chr4_3:69793641-69793660 Msa0659400:five_prime_UTR 35.0%
! AGCTCAAAGTGTTACAAGTT+CGG - chr4_3:69793894-69793913 None:intergenic 35.0%
AAGAGGAATATTACGAACGA+GGG - chr4_3:69794030-69794049 None:intergenic 35.0%
ATACACAGTTATGTCCTTTG+GGG + chr4_3:69794279-69794298 Msa0659400:intron 35.0%
!!! AGATTTTAGTTCATCCCCAA+AGG - chr4_3:69794296-69794315 None:intergenic 35.0%
GATTGAGTATTTAAGTGGCT+TGG + chr4_3:69794328-69794347 Msa0659400:intron 35.0%
GATGATAAGTATCAAAGCAC+TGG - chr4_3:69794394-69794413 None:intergenic 35.0%
TACGACAAGCGAAGTAAAAT+TGG - chr4_3:69794447-69794466 None:intergenic 35.0%
GACCTTTGGCTAAATTATTG+TGG + chr4_3:69794523-69794542 Msa0659400:intron 35.0%
TGCTAGTTGTGAATATGTTG+AGG + chr4_3:69794643-69794662 Msa0659400:intron 35.0%
AATATGTTGAGGTGCAGTAA+TGG + chr4_3:69794654-69794673 Msa0659400:intron 35.0%
!! TTTGTATTGCATTTTCAGGG+AGG + chr4_3:69794688-69794707 Msa0659400:intron 35.0%
! TCTCAATTTTCGTTCATCCT+AGG + chr4_3:69794722-69794741 Msa0659400:five_prime_UTR 35.0%
TGTTATAGTTGACTAGGTAG+AGG + chr4_3:69794904-69794923 Msa0659400:intron 35.0%
! GTTGTTGTTGTAGTTGACTT+AGG + chr4_3:69795069-69795088 Msa0659400:intron 35.0%
TTCTATCTCACAAGCGTTTA+TGG - chr4_3:69795130-69795149 None:intergenic 35.0%
GAGATAGAATGAGAGAACTT+AGG + chr4_3:69795141-69795160 Msa0659400:intron 35.0%
TGTAACATTAAACCCCTGTT+TGG - chr4_3:69795334-69795353 None:intergenic 35.0%
AAAACAAAGCGGTCATTTAG+AGG - chr4_3:69795731-69795750 None:intergenic 35.0%
TATCTGAGAGGAAAACAAAG+CGG - chr4_3:69795742-69795761 None:intergenic 35.0%
AAGTACTCTCCACTTACTAT+AGG + chr4_3:69795809-69795828 Msa0659400:intron 35.0%
ATGAAGAGTCCTATAGTAAG+TGG - chr4_3:69795821-69795840 None:intergenic 35.0%
ACTTACTATAGGACTCTTCA+TGG + chr4_3:69795820-69795839 Msa0659400:intron 35.0%
AGTCCTCAAAAAGAATCGTT+TGG - chr4_3:69795998-69796017 None:intergenic 35.0%
GTGTAGCTGAAGTTGTATAA+AGG - chr4_3:69796267-69796286 None:intergenic 35.0%
AGGTCGTTACAATCCAAAAA+TGG + chr4_3:69796643-69796662 Msa0659400:five_prime_UTR 35.0%
! GGAATAACTGGATCCATTTT+TGG - chr4_3:69796659-69796678 None:intergenic 35.0%
CAGTTATAGACTGGAATAAC+TGG - chr4_3:69796671-69796690 None:intergenic 35.0%
CAGTTATTCCAGTCTATAAC+TGG + chr4_3:69796669-69796688 Msa0659400:five_prime_UTR 35.0%
TTATGAATTCTTCTGCAGTG+GGG + chr4_3:69796809-69796828 Msa0659400:intron 35.0%
TTGTCCATCATAAACTCTCA+TGG + chr4_3:69797039-69797058 Msa0659400:intron 35.0%
AAGAGACAAGCACAAATGTA+TGG - chr4_3:69797133-69797152 None:intergenic 35.0%
!! GCTTTTTCTGCATTTAGAGA+TGG - chr4_3:69797188-69797207 None:intergenic 35.0%
GTTCATCTGGTATACAGTTA+TGG - chr4_3:69797490-69797509 None:intergenic 35.0%
GTTTGAACATAGTGTTCATC+TGG - chr4_3:69797503-69797522 None:intergenic 35.0%
ACACTATGTTCAAACATTGC+TGG + chr4_3:69797508-69797527 Msa0659400:five_prime_UTR 35.0%
! GAGGTCTTTTTGCTAGATTT+GGG - chr4_3:69797741-69797760 None:intergenic 35.0%
TCTGAGAACTTATAAGTCAC+TGG - chr4_3:69797848-69797867 None:intergenic 35.0%
TTTATTAGGACGAGGATCAA+GGG - chr4_3:69798166-69798185 None:intergenic 35.0%
! TTTTATTAGGACGAGGATCA+AGG - chr4_3:69798167-69798186 None:intergenic 35.0%
AGCTCTTTCAATCAGTCTAA+AGG - chr4_3:69798659-69798678 None:intergenic 35.0%
TAGACTGATTGAAAGAGCTT+AGG + chr4_3:69798660-69798679 Msa0659400:intron 35.0%
CTGTGTTTCATAGGTTATCT+TGG - chr4_3:69798740-69798759 None:intergenic 35.0%
AACAAAATGCTTATTGCCAG+TGG + chr4_3:69798938-69798957 Msa0659400:five_prime_UTR 35.0%
GAGTGAGACATTGTTTATGT+CGG - chr4_3:69799229-69799248 None:intergenic 35.0%
CACTCACAACATGAATTACT+TGG + chr4_3:69799244-69799263 Msa0659400:CDS 35.0%
TGAATTACTTGGGCTATGTT+TGG + chr4_3:69799255-69799274 Msa0659400:CDS 35.0%
! ACAAAACAAAAGCATAGAGG+GGG - chr4_3:69799374-69799393 None:intergenic 35.0%
! CACAAAACAAAAGCATAGAG+GGG - chr4_3:69799375-69799394 None:intergenic 35.0%
ACTTAATATTTGCACGCAAC+AGG + chr4_3:69799869-69799888 Msa0659400:intron 35.0%
CGTTGTATTGTTGTATGCAT+TGG + chr4_3:69799909-69799928 Msa0659400:intron 35.0%
ATAAAAAAGTGAAGTGGAGG+TGG - chr4_3:69800031-69800050 None:intergenic 35.0%
TTGTTGCAGAAAATGGAAGT+TGG - chr4_3:69800059-69800078 None:intergenic 35.0%
TATTGCAGACATTTCAGGAT+TGG - chr4_3:69800105-69800124 None:intergenic 35.0%
GACTTGAATCAAGAGGATAA+GGG - chr4_3:69800245-69800264 None:intergenic 35.0%
TCATCTGGTAGATGAATAAG+CGG - chr4_3:69800267-69800286 None:intergenic 35.0%
AATTAGGTACCTTGAAACTG+TGG - chr4_3:69800298-69800317 None:intergenic 35.0%
! TGAAAACTTCTCTGGGAATT+AGG - chr4_3:69800314-69800333 None:intergenic 35.0%
! TTGCATCTTCTGAGAAAGTT+TGG + chr4_3:69800367-69800386 Msa0659400:intron 35.0%
TTGAGTGTTAAACCATTGCT+TGG + chr4_3:69800486-69800505 Msa0659400:intron 35.0%
TCCAAGATTGTTCTATCCTT+TGG + chr4_3:69800619-69800638 Msa0659400:intron 35.0%
ACCAAAGGATAGAACAATCT+TGG - chr4_3:69800623-69800642 None:intergenic 35.0%
TCGCAAACAATTTCAAACAC+AGG - chr4_3:69800648-69800667 None:intergenic 35.0%
GAAATTGTTTGCGATTTCGA+TGG + chr4_3:69800654-69800673 Msa0659400:intron 35.0%
! AGGTAATGATTCCTTTTAGG+AGG + chr4_3:69800811-69800830 Msa0659400:intron 35.0%
!! AATGATTCCTTTTAGGAGGT+TGG + chr4_3:69800815-69800834 Msa0659400:intron 35.0%
!! ATGATTCCTTTTAGGAGGTT+GGG + chr4_3:69800816-69800835 Msa0659400:intron 35.0%
!! TTTTAGGAGGTTGGGTTTTA+GGG + chr4_3:69800824-69800843 Msa0659400:intron 35.0%
TACTAGCCAAGTTAGATTAG+AGG + chr4_3:69800872-69800891 Msa0659400:CDS 35.0%
TAGGAACCTCTAATCTAACT+TGG - chr4_3:69800881-69800900 None:intergenic 35.0%
TCTCTTGATCTAGGAAACAA+TGG - chr4_3:69800918-69800937 None:intergenic 35.0%
ACAGAATCATCTCTTGATCT+AGG - chr4_3:69800927-69800946 None:intergenic 35.0%
!!! GAAAGATTTGGTGCTTTTGA+AGG + chr4_3:69800956-69800975 Msa0659400:CDS 35.0%
!! AAGAGCATTCCTTGTTCAAA+TGG + chr4_3:69800983-69801002 Msa0659400:CDS 35.0%
ACATTTGAGCCATTTGAACA+AGG - chr4_3:69800995-69801014 None:intergenic 35.0%
ATGGCTCAAATGTATAAGCT+TGG + chr4_3:69801002-69801021 Msa0659400:CDS 35.0%
! AGGGAAAGAAGTATGTTCAA+TGG + chr4_3:69801058-69801077 Msa0659400:CDS 35.0%
! AATGGAATTAGAGGTTGATC+AGG + chr4_3:69801076-69801095 Msa0659400:CDS 35.0%
!! AGAGTCTTGGTGGTTATTTT+TGG + chr4_3:69801180-69801199 Msa0659400:CDS 35.0%
!!! GAGTCTTGGTGGTTATTTTT+GGG + chr4_3:69801181-69801200 Msa0659400:CDS 35.0%
!!! AGTCTTGGTGGTTATTTTTG+GGG + chr4_3:69801182-69801201 Msa0659400:CDS 35.0%
!! GGTGGCTTTAAACATATCTT+TGG + chr4_3:69801203-69801222 Msa0659400:CDS 35.0%
AATATTGACAACACTGCCAT+CGG - chr4_3:69801399-69801418 None:intergenic 35.0%
CAAAGATCTAGTGCAATTGA+TGG + chr4_3:69801524-69801543 Msa0659400:CDS 35.0%
TATTGATCAGCAACACAACA+CGG + chr4_3:69801559-69801578 Msa0659400:CDS 35.0%
GCTTTGCATTCTTTATCTCA+TGG - chr4_3:69801625-69801644 None:intergenic 35.0%
! TCTTCTTTAGGAACTTGCAA+AGG - chr4_3:69801770-69801789 None:intergenic 35.0%
! TCTTTCTTTTGCTCTCGTAT+TGG + chr4_3:69801873-69801892 Msa0659400:CDS 35.0%
! CTTTCTTTTGCTCTCGTATT+GGG + chr4_3:69801874-69801893 Msa0659400:CDS 35.0%
AAATATCCAGGAGCAAAATC+TGG + chr4_3:69802103-69802122 Msa0659400:CDS 35.0%
TCCCTCTTTGTACTTCAAAA+TGG + chr4_3:69802127-69802146 Msa0659400:CDS 35.0%
!!! GCCATTTTGAAGTACAAAGA+GGG - chr4_3:69802131-69802150 None:intergenic 35.0%
TCTAGATTCCTTCCAAACAA+AGG - chr4_3:69802161-69802180 None:intergenic 35.0%
TTGCAAGTTAAGTCTTTGCA+GGG - chr4_3:69802194-69802213 None:intergenic 35.0%
GCTTGTAAACACATTTAAGC+AGG - chr4_3:69802287-69802306 None:intergenic 35.0%
TGAGTGTTAAGAGTGGAACA+AGG - chr4_3:69793077-69793096 None:intergenic 40.0%
TGTAGAGTGAGTGTTAAGAG+TGG - chr4_3:69793084-69793103 None:intergenic 40.0%
!! ATTAGGCTATTGGGTTGGTA+TGG + chr4_3:69793306-69793325 Msa0659400:five_prime_UTR 40.0%
TTGGATCTTCTACTTCTGAG+TGG + chr4_3:69793334-69793353 Msa0659400:five_prime_UTR 40.0%
AGAAAGTGGTTCAGCAGAAA+TGG + chr4_3:69793473-69793492 Msa0659400:five_prime_UTR 40.0%
TCAGCAGAAATGGAAGAAGA+AGG + chr4_3:69793483-69793502 Msa0659400:five_prime_UTR 40.0%
! GATGCGGTATACTCATGTTT+TGG + chr4_3:69793561-69793580 Msa0659400:five_prime_UTR 40.0%
!! GAATAGGCTTCCTTTGGAAT+TGG + chr4_3:69793657-69793676 Msa0659400:five_prime_UTR 40.0%
!! GCTTCCTTTGGAATTGGTTT+GGG + chr4_3:69793663-69793682 Msa0659400:five_prime_UTR 40.0%
! TGGTTTGGGATGCATTCTTT+AGG + chr4_3:69793677-69793696 Msa0659400:five_prime_UTR 40.0%
! GGTTTGGGATGCATTCTTTA+GGG + chr4_3:69793678-69793697 Msa0659400:five_prime_UTR 40.0%
AATATTACGAACGAGGGTCT+AGG - chr4_3:69794024-69794043 None:intergenic 40.0%
CAAGAGGAATATTACGAACG+AGG - chr4_3:69794031-69794050 None:intergenic 40.0%
GCATTGTCGAGAATAGTGAA+TGG + chr4_3:69794088-69794107 Msa0659400:intron 40.0%
AGAGCTTAGATGTGTGTCTA+TGG + chr4_3:69794222-69794241 Msa0659400:intron 40.0%
GTCTATGGAGTTCTATCAGA+AGG + chr4_3:69794237-69794256 Msa0659400:intron 40.0%
ACCATGTGTTAAGAGACCTT+TGG + chr4_3:69794509-69794528 Msa0659400:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr4_3:69795048-69795067 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr4_3:69795049-69795068 None:intergenic 40.0%
ATGTCTAAGTAAAACGCGCT+CGG - chr4_3:69795696-69795715 None:intergenic 40.0%
!!! GCTTTGTTTTCCTCTCAGAT+AGG + chr4_3:69795741-69795760 Msa0659400:five_prime_UTR 40.0%
! TTTTCCTCTCAGATAGGTGA+GGG + chr4_3:69795747-69795766 Msa0659400:intron 40.0%
TGATGTGTAGGTTCAGTGTA+CGG + chr4_3:69795936-69795955 Msa0659400:intron 40.0%
!! CGATTCTTTTTGAGGACTGT+TGG + chr4_3:69796000-69796019 Msa0659400:intron 40.0%
!!! CACCAACTAGTTTTGTCGAT+AGG + chr4_3:69796307-69796326 Msa0659400:five_prime_UTR 40.0%
CACCTATCGACAAAACTAGT+TGG - chr4_3:69796312-69796331 None:intergenic 40.0%
! CCTTTTCTCCAGTTATAGAC+TGG - chr4_3:69796680-69796699 None:intergenic 40.0%
CCAGTCTATAACTGGAGAAA+AGG + chr4_3:69796677-69796696 Msa0659400:five_prime_UTR 40.0%
TAACTGGAGAAAAGGATCTC+AGG + chr4_3:69796685-69796704 Msa0659400:five_prime_UTR 40.0%
ACTTGATCCCTCCAAAATTC+GGG - chr4_3:69797216-69797235 None:intergenic 40.0%
GACTTGATCCCTCCAAAATT+CGG - chr4_3:69797217-69797236 None:intergenic 40.0%
! CGAGGTCTTTTTGCTAGATT+TGG - chr4_3:69797742-69797761 None:intergenic 40.0%
ATCAGTGACACATACTGCAT+GGG + chr4_3:69797781-69797800 Msa0659400:five_prime_UTR 40.0%
! TCAAGAAAGCGATTTTGCAG+TGG - chr4_3:69797922-69797941 None:intergenic 40.0%
GGGTTATCATTATAGGAAGC+TGG + chr4_3:69797969-69797988 Msa0659400:intron 40.0%
AGACTGAATACCGAAGAGAA+TGG + chr4_3:69798418-69798437 Msa0659400:five_prime_UTR 40.0%
TGCTTGTACACCATTCTCTT+CGG - chr4_3:69798431-69798450 None:intergenic 40.0%
AAGAGAATGGTGTACAAGCA+AGG + chr4_3:69798431-69798450 Msa0659400:five_prime_UTR 40.0%
AGAGAATGGTGTACAAGCAA+GGG + chr4_3:69798432-69798451 Msa0659400:five_prime_UTR 40.0%
TCTTGCAAAAAGGAAGCAAG+TGG - chr4_3:69798466-69798485 None:intergenic 40.0%
!! TGCTTTGAGGCTTCTTAACA+TGG + chr4_3:69798503-69798522 Msa0659400:five_prime_UTR 40.0%
! TTCTGTTGGACAGTCTGTTT+TGG + chr4_3:69798898-69798917 Msa0659400:intron 40.0%
! TCTGTTGGACAGTCTGTTTT+GGG + chr4_3:69798899-69798918 Msa0659400:intron 40.0%
! GGCTATGTTTGGTTCAAATG+AGG + chr4_3:69799266-69799285 Msa0659400:CDS 40.0%
TTCAAATGAGGTGATGTGCT+TGG + chr4_3:69799278-69799297 Msa0659400:intron 40.0%
! AAAACAAAAGCATAGAGGGG+GGG - chr4_3:69799372-69799391 None:intergenic 40.0%
! CAAAACAAAAGCATAGAGGG+GGG - chr4_3:69799373-69799392 None:intergenic 40.0%
! CATGCATCTATCTGTCACTT+TGG - chr4_3:69799938-69799957 None:intergenic 40.0%
!! ACGCGTTTTGTTGCAGAAAA+TGG - chr4_3:69800066-69800085 None:intergenic 40.0%
GAATCAAGAGGATAAGGGTA+GGG - chr4_3:69800240-69800259 None:intergenic 40.0%
TGAATCAAGAGGATAAGGGT+AGG - chr4_3:69800241-69800260 None:intergenic 40.0%
GGACTTGAATCAAGAGGATA+AGG - chr4_3:69800246-69800265 None:intergenic 40.0%
! ATAAGCGGACTTGAATCAAG+AGG - chr4_3:69800252-69800271 None:intergenic 40.0%
ATGTGTTTGCCACAGTTTCA+AGG + chr4_3:69800286-69800305 Msa0659400:intron 40.0%
TGAACCCAAATACCAAGCAA+TGG - chr4_3:69800501-69800520 None:intergenic 40.0%
GTTCAACAGAATCCTGAACT+TGG + chr4_3:69800516-69800535 Msa0659400:intron 40.0%
GCTACAACAGAAACAAAACC+TGG - chr4_3:69800561-69800580 None:intergenic 40.0%
!! CTCAGGAGGTTGTTTCTTTA+GGG + chr4_3:69800595-69800614 Msa0659400:intron 40.0%
TTTCAAACACAGGTGACCAA+AGG - chr4_3:69800638-69800657 None:intergenic 40.0%
GGGGTAGATTGTGTTTATCA+TGG + chr4_3:69800714-69800733 Msa0659400:intron 40.0%
! TGTTGCTTGAGGTTGAATCT+AGG + chr4_3:69800772-69800791 Msa0659400:intron 40.0%
CTAAAACCCAACCTCCTAAA+AGG - chr4_3:69800825-69800844 None:intergenic 40.0%
!! CTTTTAGGAGGTTGGGTTTT+AGG + chr4_3:69800823-69800842 Msa0659400:intron 40.0%
AGGTTCCTAATATGGGAACT+GGG + chr4_3:69800892-69800911 Msa0659400:CDS 40.0%
! CTCTTTTCCTCCAAGCAATA+AGG + chr4_3:69801130-69801149 Msa0659400:CDS 40.0%
TCACTATCCTTATTGCTTGG+AGG - chr4_3:69801140-69801159 None:intergenic 40.0%
! GTGTCACTATCCTTATTGCT+TGG - chr4_3:69801143-69801162 None:intergenic 40.0%
TGCATCAAGAGAAAGAGTCT+TGG + chr4_3:69801167-69801186 Msa0659400:CDS 40.0%
ATCAAGAGAAAGAGTCTTGG+TGG + chr4_3:69801170-69801189 Msa0659400:CDS 40.0%
ATCAATACATCACAACCGCA+GGG + chr4_3:69801267-69801286 Msa0659400:CDS 40.0%
CTAGATCTTCGATGGTTACT+TGG - chr4_3:69801293-69801312 None:intergenic 40.0%
AATATTGACAGCACTGCCAT+CGG - chr4_3:69801321-69801340 None:intergenic 40.0%
ACAAGAGACGATCAAAGATC+TGG + chr4_3:69801368-69801387 Msa0659400:CDS 40.0%
CGATTGAACTAGATCTTCGA+TGG - chr4_3:69801445-69801464 None:intergenic 40.0%
! CGAAGATCTAGTTCAATCGA+TGG + chr4_3:69801446-69801465 Msa0659400:CDS 40.0%
! AGATCTAGTTCAATCGATGG+AGG + chr4_3:69801449-69801468 Msa0659400:CDS 40.0%
CAGCATCACAAAATGATTGC+TGG + chr4_3:69801488-69801507 Msa0659400:CDS 40.0%
GAACTGGAGAGAATGACATA+GGG + chr4_3:69801588-69801607 Msa0659400:CDS 40.0%
GGCCGAATATGAACAAAAGT+TGG + chr4_3:69801726-69801745 Msa0659400:CDS 40.0%
! GCATACACTTGGTCTTCTTT+AGG - chr4_3:69801782-69801801 None:intergenic 40.0%
AAAGAAGACCAAGTGTATGC+TGG + chr4_3:69801782-69801801 Msa0659400:CDS 40.0%
!! ACCAAGTGTATGCTGGTTTA+TGG + chr4_3:69801789-69801808 Msa0659400:CDS 40.0%
!! CCAAGTGTATGCTGGTTTAT+GGG + chr4_3:69801790-69801809 Msa0659400:CDS 40.0%
!! CAAGTGTATGCTGGTTTATG+GGG + chr4_3:69801791-69801810 Msa0659400:CDS 40.0%
AAGGGACAACAACTTCTCAT+TGG + chr4_3:69801902-69801921 Msa0659400:CDS 40.0%
TTCTTCTGATCCGTTTCCTT+GGG + chr4_3:69802003-69802022 Msa0659400:CDS 40.0%
CTATCAGTTTCCCAAGGAAA+CGG - chr4_3:69802016-69802035 None:intergenic 40.0%
GGCTATGGTTTCAAATATCC+AGG + chr4_3:69802091-69802110 Msa0659400:CDS 40.0%
!!! CGCCATTTTGAAGTACAAAG+AGG - chr4_3:69802132-69802151 None:intergenic 40.0%
CTTGCAAGTTAAGTCTTTGC+AGG - chr4_3:69802195-69802214 None:intergenic 40.0%
!! TTGGGTTGGTATGGATCTGT+TGG + chr4_3:69793315-69793334 Msa0659400:five_prime_UTR 45.0%
!!! TTGGTGGTGGTGCTTTGTTT+TGG + chr4_3:69793520-69793539 Msa0659400:five_prime_UTR 45.0%
!!! TGGTGGTGGTGCTTTGTTTT+GGG + chr4_3:69793521-69793540 Msa0659400:five_prime_UTR 45.0%
TGCAAGGAATAGGCTTCCTT+TGG + chr4_3:69793651-69793670 Msa0659400:five_prime_UTR 45.0%
!! GGCTTCCTTTGGAATTGGTT+TGG + chr4_3:69793662-69793681 Msa0659400:five_prime_UTR 45.0%
GCATCCCAAACCAATTCCAA+AGG - chr4_3:69793670-69793689 None:intergenic 45.0%
! GTGTGGACTTGGTCATTAGT+AGG + chr4_3:69793775-69793794 Msa0659400:intron 45.0%
AGTGTTACAAGTTCGGAGTC+TGG - chr4_3:69793887-69793906 None:intergenic 45.0%
CACTACTGGGAACTATGCAA+CGG - chr4_3:69793918-69793937 None:intergenic 45.0%
GGTAACATCAACGCACTACT+GGG - chr4_3:69793931-69793950 None:intergenic 45.0%
AGGTAACATCAACGCACTAC+TGG - chr4_3:69793932-69793951 None:intergenic 45.0%
TAACATCAACACGTCCTCGA+AGG - chr4_3:69794061-69794080 None:intergenic 45.0%
GCCAAAGGTCTCTTAACACA+TGG - chr4_3:69794513-69794532 None:intergenic 45.0%
! ATTTTCGTTCATCCTAGGCC+AGG + chr4_3:69794727-69794746 Msa0659400:five_prime_UTR 45.0%
! TTTTCGTTCATCCTAGGCCA+GGG + chr4_3:69794728-69794747 Msa0659400:five_prime_UTR 45.0%
TTTATCCCACTAAGTGGGGT+CGG - chr4_3:69795044-69795063 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr4_3:69795050-69795069 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr4_3:69795047-69795066 Msa0659400:intron 45.0%
GCACACTTCAATCCAAGGAA+AGG - chr4_3:69795359-69795378 None:intergenic 45.0%
TTGGAGCACACTTCAATCCA+AGG - chr4_3:69795364-69795383 None:intergenic 45.0%
! GTTTTCCTCTCAGATAGGTG+AGG + chr4_3:69795746-69795765 Msa0659400:intron 45.0%
TATACCCTCACCTATCTGAG+AGG - chr4_3:69795754-69795773 None:intergenic 45.0%
GACTCTTCATGGTTTCGTTC+AGG + chr4_3:69795831-69795850 Msa0659400:intron 45.0%
CTTCATGGTTTCGTTCAGGA+AGG + chr4_3:69795835-69795854 Msa0659400:intron 45.0%
GGGGCAAACTATTAGTGGTT+TGG - chr4_3:69795902-69795921 None:intergenic 45.0%
! GGTTTGGGGCAAACTATTAG+TGG - chr4_3:69795907-69795926 None:intergenic 45.0%
!! ACATCAGCTTGGTTCGGTTT+GGG - chr4_3:69795922-69795941 None:intergenic 45.0%
ACCTACACATCAGCTTGGTT+CGG - chr4_3:69795928-69795947 None:intergenic 45.0%
ACTGAACCTACACATCAGCT+TGG - chr4_3:69795933-69795952 None:intergenic 45.0%
AGGTTCAGTGTACGGTTATG+TGG + chr4_3:69795944-69795963 Msa0659400:intron 45.0%
! GAAATGTGCTAGAGAGCGTA+AGG - chr4_3:69796353-69796372 None:intergenic 45.0%
TACAGCTTCGCTGACACAAA+AGG + chr4_3:69796620-69796639 Msa0659400:intron 45.0%
! GCTTGTCTCTTTTATGCCGA+CGG + chr4_3:69797142-69797161 Msa0659400:intron 45.0%
! AAAAGCCGCTACCCGAATTT+TGG + chr4_3:69797202-69797221 Msa0659400:five_prime_UTR 45.0%
GATCAGTGACACATACTGCA+TGG + chr4_3:69797780-69797799 Msa0659400:five_prime_UTR 45.0%
! CGAGGATCAAGGGATTTTCT+TGG - chr4_3:69798156-69798175 None:intergenic 45.0%
GCAAAAAGGAAGCAAGTGGA+CGG - chr4_3:69798462-69798481 None:intergenic 45.0%
!! TTACTAGGACTGCTGCTTTG+AGG + chr4_3:69798490-69798509 Msa0659400:five_prime_UTR 45.0%
AGGGTAGGGTGACAACATAA+TGG - chr4_3:69800226-69800245 None:intergenic 45.0%
ACTGTGGCAAACACATCATC+TGG - chr4_3:69800282-69800301 None:intergenic 45.0%
CACTCAAAGACCTTGTTGAG+TGG + chr4_3:69800421-69800440 Msa0659400:intron 45.0%
AGCGTGTCGAATAATACCTC+AGG + chr4_3:69800578-69800597 Msa0659400:intron 45.0%
GTGTCGAATAATACCTCAGG+AGG + chr4_3:69800581-69800600 Msa0659400:intron 45.0%
CCTAAAGAAACAACCTCCTG+AGG - chr4_3:69800597-69800616 None:intergenic 45.0%
!! CCTCAGGAGGTTGTTTCTTT+AGG + chr4_3:69800594-69800613 Msa0659400:intron 45.0%
TCTTCATGGAAGGGAAGAAG+AGG + chr4_3:69800692-69800711 Msa0659400:intron 45.0%
CTTCATGGAAGGGAAGAAGA+GGG + chr4_3:69800693-69800712 Msa0659400:intron 45.0%
TTCATGGAAGGGAAGAAGAG+GGG + chr4_3:69800694-69800713 Msa0659400:intron 45.0%
GAGGTTCCTAATATGGGAAC+TGG + chr4_3:69800891-69800910 Msa0659400:CDS 45.0%
AATGGCCCAGTTCCCATATT+AGG - chr4_3:69800900-69800919 None:intergenic 45.0%
!!! CTTGGTGGTTATTTTTGGGG+TGG + chr4_3:69801185-69801204 Msa0659400:CDS 45.0%
CATCAATACATCACAACCGC+AGG + chr4_3:69801266-69801285 Msa0659400:CDS 45.0%
CAAAGATCTGGTACAACCGA+TGG + chr4_3:69801380-69801399 Msa0659400:CDS 45.0%
GGAACTGGAGAGAATGACAT+AGG + chr4_3:69801587-69801606 Msa0659400:CDS 45.0%
CCCATAAACCAGCATACACT+TGG - chr4_3:69801793-69801812 None:intergenic 45.0%
CGCTATGCATTGCATCCTAA+TGG + chr4_3:69801947-69801966 Msa0659400:CDS 45.0%
CAAGGAAACGGATCAGAAGA+AGG - chr4_3:69802004-69802023 None:intergenic 45.0%
CTTCTTCTGATCCGTTTCCT+TGG + chr4_3:69802002-69802021 Msa0659400:CDS 45.0%
CGTTTCCTTGGGAAACTGAT+AGG + chr4_3:69802014-69802033 Msa0659400:CDS 45.0%
GAGTTCCTATCAGTTTCCCA+AGG - chr4_3:69802022-69802041 None:intergenic 45.0%
!! GAAGGTATTGCAAGTGGCTA+TGG + chr4_3:69802076-69802095 Msa0659400:CDS 45.0%
ATGGCGATCTTGCCTTTGTT+TGG + chr4_3:69802146-69802165 Msa0659400:CDS 45.0%
! CGATCTTGCCTTTGTTTGGA+AGG + chr4_3:69802150-69802169 Msa0659400:CDS 45.0%
TTGTCAATAGGAGGCAGAGA+AGG - chr4_3:69802244-69802263 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr4_3:69793758-69793777 Msa0659400:intron 50.0%
TGTGTGTGTGTGTGTGGACT+TGG + chr4_3:69793764-69793783 Msa0659400:intron 50.0%
ATCAACACGTCCTCGAAGGA+GGG - chr4_3:69794057-69794076 None:intergenic 50.0%
TTCAACACAAACCCTGGCCT+AGG - chr4_3:69794742-69794761 None:intergenic 50.0%
GCCAGGGTTTGTGTTGAATG+AGG + chr4_3:69794744-69794763 Msa0659400:five_prime_UTR 50.0%
GCCTCATTCAACACAAACCC+TGG - chr4_3:69794748-69794767 None:intergenic 50.0%
GGGTGAAGCAAGCATGATAG+AGG + chr4_3:69795670-69795689 Msa0659400:five_prime_UTR 50.0%
!! CATCAGCTTGGTTCGGTTTG+GGG - chr4_3:69795921-69795940 None:intergenic 50.0%
!! CACATCAGCTTGGTTCGGTT+TGG - chr4_3:69795923-69795942 None:intergenic 50.0%
ACCGAACCAAGCTGATGTGT+AGG + chr4_3:69795924-69795943 Msa0659400:intron 50.0%
AGCTTCGCTGACACAAAAGG+AGG + chr4_3:69796623-69796642 Msa0659400:intron 50.0%
! TTTGACCAGGAAGCATGCCA+AGG + chr4_3:69796835-69796854 Msa0659400:five_prime_UTR 50.0%
TACAACCTTGGCATGCTTCC+TGG - chr4_3:69796843-69796862 None:intergenic 50.0%
GAAGCATGCCAAGGTTGTAG+TGG + chr4_3:69796844-69796863 Msa0659400:five_prime_UTR 50.0%
ATCGTCCTCCACTACAACCT+TGG - chr4_3:69796855-69796874 None:intergenic 50.0%
! TGTCTCTTTTATGCCGACGG+CGG + chr4_3:69797145-69797164 Msa0659400:intron 50.0%
TAGAATGAGACTACCGCCGT+CGG - chr4_3:69797161-69797180 None:intergenic 50.0%
TCCCTCCAAAATTCGGGTAG+CGG - chr4_3:69797210-69797229 None:intergenic 50.0%
TGGATCTTAGACGTGTCAGC+AGG - chr4_3:69797470-69797489 None:intergenic 50.0%
AAGTCACTGGATGCCATCCA+CGG - chr4_3:69797835-69797854 None:intergenic 50.0%
ACTCTGCTTGTATCAGCCAC+TGG - chr4_3:69798957-69798976 None:intergenic 50.0%
CACACTCTCTCCACTCAACA+AGG - chr4_3:69800434-69800453 None:intergenic 50.0%
TCATGGAAGGGAAGAAGAGG+GGG + chr4_3:69800695-69800714 Msa0659400:intron 50.0%
CGGTCGAACTAGATCTTCGA+TGG - chr4_3:69801301-69801320 None:intergenic 50.0%
! CGAAGATCTAGTTCGACCGA+TGG + chr4_3:69801302-69801321 Msa0659400:CDS 50.0%
TGATCTGCAACGCAACACGA+TGG + chr4_3:69801340-69801359 Msa0659400:CDS 50.0%
GTCATTCTCTCCAGTTCCTG+CGG - chr4_3:69801585-69801604 None:intergenic 50.0%
!! GTGTATGCTGGTTTATGGGG+CGG + chr4_3:69801794-69801813 Msa0659400:CDS 50.0%
! GGTTTATGGGGCGGTACTTT+TGG + chr4_3:69801803-69801822 Msa0659400:CDS 50.0%
! TATGGGGCGGTACTTTTGGA+TGG + chr4_3:69801807-69801826 Msa0659400:CDS 50.0%
CTCTCGTATTGGGAGTCGAA+GGG + chr4_3:69801884-69801903 Msa0659400:CDS 50.0%
! GAACATGCTTTTGCGGGAGA+AGG + chr4_3:69802058-69802077 Msa0659400:CDS 50.0%
! AGGGAACCAGATTTTGCTCC+TGG - chr4_3:69802112-69802131 None:intergenic 50.0%
CATCAACACGTCCTCGAAGG+AGG - chr4_3:69794058-69794077 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_3:69795036-69795055 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_3:69795035-69795054 Msa0659400:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_3:69795036-69795055 Msa0659400:intron 55.0%
!!! TGCAGTGGGGTGTTTTGACC+AGG + chr4_3:69796822-69796841 Msa0659400:intron 55.0%
GCATGCCAAGGTTGTAGTGG+AGG + chr4_3:69796847-69796866 Msa0659400:five_prime_UTR 55.0%
! AGCCGCTACCCGAATTTTGG+AGG + chr4_3:69797205-69797224 Msa0659400:five_prime_UTR 55.0%
! GCCGCTACCCGAATTTTGGA+GGG + chr4_3:69797206-69797225 Msa0659400:five_prime_UTR 55.0%
! ACAAAAGCATAGAGGGGGGG+CGG - chr4_3:69799369-69799388 None:intergenic 55.0%
TCGATGGTTACTTGGCCCTG+CGG - chr4_3:69801285-69801304 None:intergenic 55.0%
TGCAACGCAACACGATGGCA+GGG + chr4_3:69801345-69801364 Msa0659400:CDS 55.0%
GCTCTCGTATTGGGAGTCGA+AGG + chr4_3:69801883-69801902 Msa0659400:CDS 55.0%
!! GCGGGAGAAGGTATTGCAAG+TGG + chr4_3:69802070-69802089 Msa0659400:CDS 55.0%
CCTCGAAGGAGGGATGCAAG+AGG - chr4_3:69794047-69794066 None:intergenic 60.0%
CCTCTTGCATCCCTCCTTCG+AGG + chr4_3:69794044-69794063 Msa0659400:intron 60.0%
TCAGCAGGCTGCGCGAAGAA+AGG - chr4_3:69797455-69797474 None:intergenic 60.0%
!! GCGCTCACGATCTCTGGAGT+TGG - chr4_3:69797813-69797832 None:intergenic 60.0%
CTGCAACGCAACACGATGGC+AGG + chr4_3:69801344-69801363 Msa0659400:CDS 60.0%
! TCCAGAGATCGTGAGCGCCG+TGG + chr4_3:69797815-69797834 Msa0659400:five_prime_UTR 65.0%
TCCACGGCGCTCACGATCTC+TGG - chr4_3:69797819-69797838 None:intergenic 65.0%
! GAGATCGTGAGCGCCGTGGA+TGG + chr4_3:69797819-69797838 Msa0659400:five_prime_UTR 65.0%
AAAGCATAGAGGGGGGGCGG+TGG - chr4_3:69799366-69799385 None:intergenic 65.0%
CAGCAACACAACACGGCCGC+AGG + chr4_3:69801566-69801585 Msa0659400:CDS 65.0%
CACAACACGGCCGCAGGAAC+TGG + chr4_3:69801572-69801591 Msa0659400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69793074 69802309 69793074 ID=Msa0659400;Name=Msa0659400
chr4_3 mRNA 69793074 69802309 69793074 ID=Msa0659400-mRNA-1;Parent=Msa0659400;Name=Msa0659400-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1786|0.91|0.84|1|0.66|0.69|13|0|509
chr4_3 exon 69793074 69793699 69793074 ID=Msa0659400-mRNA-1:exon:20560;Parent=Msa0659400-mRNA-1
chr4_3 exon 69794706 69794819 69794706 ID=Msa0659400-mRNA-1:exon:20561;Parent=Msa0659400-mRNA-1
chr4_3 exon 69795662 69795762 69795662 ID=Msa0659400-mRNA-1:exon:20562;Parent=Msa0659400-mRNA-1
chr4_3 exon 69796237 69796328 69796237 ID=Msa0659400-mRNA-1:exon:20563;Parent=Msa0659400-mRNA-1
chr4_3 exon 69796625 69796706 69796625 ID=Msa0659400-mRNA-1:exon:20564;Parent=Msa0659400-mRNA-1
chr4_3 exon 69796827 69796907 69796827 ID=Msa0659400-mRNA-1:exon:20565;Parent=Msa0659400-mRNA-1
chr4_3 exon 69797201 69797239 69797201 ID=Msa0659400-mRNA-1:exon:20566;Parent=Msa0659400-mRNA-1
chr4_3 exon 69797467 69797532 69797467 ID=Msa0659400-mRNA-1:exon:20567;Parent=Msa0659400-mRNA-1
chr4_3 exon 69797749 69797898 69797749 ID=Msa0659400-mRNA-1:exon:20568;Parent=Msa0659400-mRNA-1
chr4_3 exon 69798396 69798524 69798396 ID=Msa0659400-mRNA-1:exon:20569;Parent=Msa0659400-mRNA-1
chr4_3 exon 69798911 69799061 69798911 ID=Msa0659400-mRNA-1:exon:20570;Parent=Msa0659400-mRNA-1
chr4_3 exon 69799083 69799287 69799083 ID=Msa0659400-mRNA-1:exon:20571;Parent=Msa0659400-mRNA-1
chr4_3 exon 69800830 69802309 69800830 ID=Msa0659400-mRNA-1:exon:20572;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69793074 69793699 69793074 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69794706 69794819 69794706 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69795662 69795762 69795662 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69796237 69796328 69796237 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69796625 69796706 69796625 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69796827 69796907 69796827 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69797201 69797239 69797201 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69797467 69797532 69797467 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69797749 69797898 69797749 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69798396 69798524 69798396 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69798911 69799061 69798911 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 five_prime_UTR 69799083 69799237 69799083 ID=Msa0659400-mRNA-1:five_prime_utr;Parent=Msa0659400-mRNA-1
chr4_3 CDS 69799238 69799287 69799238 ID=Msa0659400-mRNA-1:cds;Parent=Msa0659400-mRNA-1
chr4_3 CDS 69800830 69802309 69800830 ID=Msa0659400-mRNA-1:cds;Parent=Msa0659400-mRNA-1
Gene Sequence

>Msa0659400

ATGTCTCACTCACAACATGAATTACTTGGGCTATGTTTGGTTCAAATGAGGAGGTTGGGTTTTAGGGATAGAAAAAAGTTGCTTGAGATCACTACTAGCCAAGTTAGATTAGAGGTTCCTAATATGGGAACTGGGCCATTGTTTCCTAGATCAAGAGATGATTCTGTAAATTTTCAGAAAGATTTGGTGCTTTTGAAGGAAAGAAGAGCATTCCTTGTTCAAATGGCTCAAATGTATAAGCTTGGTTGTATTCAGATTGAAAATAAGGAAAATTCTCAAGGGAAAGAAGTATGTTCAATGGAATTAGAGGTTGATCAGGCGAGAAAGAGTCGTGACTATTCAAAAGCTTTCTCTTTTCCTCCAAGCAATAAGGATAGTGACACACAATGCATCAAGAGAAAGAGTCTTGGTGGTTATTTTTGGGGTGGCTTTAAACATATCTTTGGAAGATCTAGTTTAGTTGACGACTGTGCTGTCAATACTGATCATCAATACATCACAACCGCAGGGCCAAGTAACCATCGAAGATCTAGTTCGACCGATGGCAGTGCTGTCAATATTGATCTGCAACGCAACACGATGGCAGGGACAAGAGACGATCAAAGATCTGGTACAACCGATGGCAGTGTTGTCAATATTGATCAGAAACACGAAACAAGATACCATCGAAGATCTAGTTCAATCGATGGAGGTGTTAACAATATTGATCAGCATCACAAAATGATTGCTGGAACAATAGATGATCAAAGATCTAGTGCAATTGATGGGAGTGTTGTCAATATTGATCAGCAACACAACACGGCCGCAGGAACTGGAGAGAATGACATAGGGATTAGTTCAAGCCATGAGATAAAGAATGCAAAGCTTCAACACTTTCTTAGATCAAGTGACACGTTAATGCTAACATTGAGTGCATTAAATGCAAAATTATCATCTTTTCGAGGTTGGCCGAATATGAACAAAAGTTGGTTTGCACTTTACAAGATGCCTTTGCAAGTTCCTAAAGAAGACCAAGTGTATGCTGGTTTATGGGGCGGTACTTTTGGATGGCCTCATGAAAAACCTTCTCAAAACAAGCCAAAAAAGGCTTTATTCTTTCTTTTGCTCTCGTATTGGGAGTCGAAGGGACAACAACTTCTCATTGGAACAAAAATATTGGAAGGCGCTCGCTATGCATTGCATCCTAATGGTTCAGCAATGTTTATAGTGAATATCAACAAGCCTTCTTCTGATCCGTTTCCTTGGGAAACTGATAGGAACTCGTTTTCGATGAATATTGAACATGCTTTTGCGGGAGAAGGTATTGCAAGTGGCTATGGTTTCAAATATCCAGGAGCAAAATCTGGTTCCCTCTTTGTACTTCAAAATGGCGATCTTGCCTTTGTTTGGAAGGAATCTAGAGATGTTTTGACCCTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAAGGAAGAAGGATACCTTCTCTGCCTCCTATTGACAATTTTTCATATTTGATGAAATCCTGCTTAAATGTGTTTACAAGCTAA
Protein sequence

>Msa0659400

MSHSQHELLGLCLVQMRRLGFRDRKKLLEITTSQVRLEVPNMGTGPLFPRSRDDSVNFQKDLVLLKERRAFLVQMAQMYKLGCIQIENKENSQGKEVCSMELEVDQARKSRDYSKAFSFPPSNKDSDTQCIKRKSLGGYFWGGFKHIFGRSSLVDDCAVNTDHQYITTAGPSNHRRSSSTDGSAVNIDLQRNTMAGTRDDQRSGTTDGSVVNIDQKHETRYHRRSSSIDGGVNNIDQHHKMIAGTIDDQRSSAIDGSVVNIDQQHNTAAGTGENDIGISSSHEIKNAKLQHFLRSSDTLMLTLSALNAKLSSFRGWPNMNKSWFALYKMPLQVPKEDQVYAGLWGGTFGWPHEKPSQNKPKKALFFLLLSYWESKGQQLLIGTKILEGARYALHPNGSAMFIVNINKPSSDPFPWETDRNSFSMNIEHAFAGEGIASGYGFKYPGAKSGSLFVLQNGDLAFVWKESRDVLTLQRLNLQELLKKGRRIPSLPPIDNFSYLMKSCLNVFTS*