AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253300 MtrunA17_Chr8g0369861 95.804 143 6 0 1 143 1 143 1.54e-101 293
Msa1253300 MtrunA17_Chr8g0369871 97.872 141 3 0 142 282 4 144 7.10e-101 291
Msa1253300 MtrunA17_Chr7g0272221 37.624 202 117 4 22 220 98 293 2.10e-40 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253300 AT1G78690.5 66.667 282 88 4 4 279 3 284 2.25e-137 389
Msa1253300 AT1G78690.1 66.667 282 88 4 4 279 3 284 2.25e-137 389
Msa1253300 AT1G78690.2 75.936 187 44 1 4 189 3 189 1.93e-105 305
Msa1253300 AT1G78690.3 66.029 209 65 4 77 279 1 209 7.44e-97 283
Msa1253300 AT1G78690.4 66.029 209 65 4 77 279 1 209 7.44e-97 283
Msa1253300 AT3G05510.2 35.268 224 136 3 20 240 3 220 7.31e-39 139
Msa1253300 AT3G05510.1 34.468 235 145 3 9 240 82 310 2.53e-38 140

Find 119 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTAGCCCATCTAATTT+TGG 0.094853 8_2:-50723444 None:intergenic
TCCGGCAATGTGGGGATTTA+AGG 0.153117 8_2:+50718831 Msa1253300:CDS
CTGTTCTGCACCACAAAATA+AGG 0.160550 8_2:-50723796 None:intergenic
CAAATTTGTAACATCTTAAA+AGG 0.181915 8_2:-50723280 None:intergenic
AAGAAGATTAACATAATTAT+TGG 0.205505 8_2:+50723032 Msa1253300:CDS
ATCCAAACCATCGGAAGTTT+TGG 0.236147 8_2:-50723141 None:intergenic
TCCCCATTTCAATCGCCTTA+TGG 0.245711 8_2:-50721824 None:intergenic
AATAAGGGAACAAACTAAAT+AGG 0.309309 8_2:-50723780 None:intergenic
CCGACTCTTGTCGGCGGTGG+TGG 0.309559 8_2:+50718479 Msa1253300:five_prime_UTR
CCCCATTTCAATCGCCTTAT+GGG 0.322930 8_2:-50721823 None:intergenic
GTGTTGCCATGGAGAAATTA+AGG 0.335963 8_2:+50723210 Msa1253300:CDS
CCCTTAAATCCCCACATTGC+CGG 0.342600 8_2:-50718832 None:intergenic
TTAATCTTCTTATTGCATAA+TGG 0.350456 8_2:-50723020 None:intergenic
TCTATGCGATCGTGTATTAC+AGG 0.351702 8_2:-50723716 None:intergenic
CCGGCAATGTGGGGATTTAA+GGG 0.352422 8_2:+50718832 Msa1253300:CDS
GCCCAAAACTTCCGATGGTT+TGG 0.352965 8_2:+50723139 Msa1253300:CDS
ATGCACAGCCCAAAATTAGA+TGG 0.362933 8_2:+50723435 Msa1253300:three_prime_UTR
CGACTCTTGTCGGCGGTGGT+GGG 0.375123 8_2:+50718480 Msa1253300:five_prime_UTR
GGCAATACAATCGGAGTTAT+AGG 0.380006 8_2:-50721871 None:intergenic
GAGAGGGATGCCTTTGGGTC+TGG 0.393985 8_2:-50718670 None:intergenic
GCTGGAAGGTCAAATTCAAT+TGG 0.397107 8_2:-50723059 None:intergenic
CACCCATAAGGCGATTGAAA+TGG 0.400448 8_2:+50721821 Msa1253300:CDS
ATGGAGAAATTAAGGTGTTA+TGG 0.405553 8_2:+50723218 Msa1253300:CDS
TGAAAACCATGATGAACAAT+TGG 0.407703 8_2:-50721892 None:intergenic
GGTGAGGAGAGGGATGCCTT+TGG 0.409255 8_2:-50718676 None:intergenic
ACCCATAAGGCGATTGAAAT+GGG 0.410412 8_2:+50721822 Msa1253300:CDS
ATAGCCATTTCACTCATTGC+TGG 0.413100 8_2:-50723077 None:intergenic
GTGAGGAGAGGGATGCCTTT+GGG 0.415473 8_2:-50718675 None:intergenic
GAATCACTTCCGACTCTTGT+CGG 0.429901 8_2:+50718470 Msa1253300:five_prime_UTR
CTCAATCCTCTTATAGGCTA+GGG 0.431882 8_2:+50723515 Msa1253300:three_prime_UTR
TGTAACATCTTAAAAGGCTT+AGG 0.432824 8_2:-50723274 None:intergenic
TGTTCTGCACCACAAAATAA+GGG 0.432888 8_2:-50723795 None:intergenic
TGCTTGAACCGCATCCCAAC+CGG 0.434204 8_2:-50723661 None:intergenic
TTTATCCCCTAGCCTATAAG+AGG 0.437393 8_2:-50723521 None:intergenic
GGAATGAATCATTCCGAGAC+TGG 0.443898 8_2:-50723103 None:intergenic
CTACCAAACATATATTTCTC+TGG 0.451010 8_2:-50722984 None:intergenic
GACTCTTGTCGGCGGTGGTG+GGG 0.453538 8_2:+50718481 Msa1253300:five_prime_UTR
GCTCAATCCTCTTATAGGCT+AGG 0.455954 8_2:+50723514 Msa1253300:three_prime_UTR
AATGATTCATTCCCTGCTAT+CGG 0.460627 8_2:+50723113 Msa1253300:CDS
CCTTCCAGCAATGAGTGAAA+TGG 0.466140 8_2:+50723073 Msa1253300:CDS
GGCGCTTAAATGATGGAGAA+TGG 0.466287 8_2:+50720127 Msa1253300:CDS
TGTTGTGAGATATAAATAAA+CGG 0.468003 8_2:+50723623 Msa1253300:three_prime_UTR
ATGCCAGAGAAATATATGTT+TGG 0.471220 8_2:+50722981 Msa1253300:CDS
TTGTTGCAGTTTGGATGATC+CGG 0.474093 8_2:+50718813 Msa1253300:intron
TTCTTATTGCATAATGGTAA+AGG 0.476447 8_2:-50723014 None:intergenic
CCAACCGGATCTGCGAATCC+TGG 0.476717 8_2:-50723646 None:intergenic
TTGAGTGAGAACTCTCAACT+TGG 0.477003 8_2:+50723343 Msa1253300:three_prime_UTR
CAGGATTCGCAGATCCGGTT+GGG 0.478873 8_2:+50723647 Msa1253300:three_prime_UTR
TGCATACCTATTACAAGAGG+TGG 0.488641 8_2:+50720069 Msa1253300:CDS
TTCAGCAGCAAGAACCCATC+TGG 0.489190 8_2:-50718881 None:intergenic
GTATTGCCAATTGTTCATCA+TGG 0.490395 8_2:+50721886 Msa1253300:CDS
AGCACATGAATGAAGCGCTT+GGG 0.493733 8_2:+50720106 Msa1253300:CDS
TTTGGATGATCCGGCAATGT+GGG 0.498103 8_2:+50718822 Msa1253300:CDS
GAGCACATGAATGAAGCGCT+TGG 0.502704 8_2:+50720105 Msa1253300:CDS
ATGATTCATTCCCTGCTATC+GGG 0.503118 8_2:+50723114 Msa1253300:CDS
TGATACTAAGTTAGCCAGAT+GGG 0.506841 8_2:+50718867 Msa1253300:CDS
TCGCAGATCCGGTTGGGATG+CGG 0.510048 8_2:+50723653 Msa1253300:three_prime_UTR
GATGGAGTGGGCGGCGAAGT+CGG 0.511987 8_2:+50718521 Msa1253300:CDS
TGAACAATTGGCAATACAAT+CGG 0.512162 8_2:-50721880 None:intergenic
TGAGTGAGAACTCTCAACTT+GGG 0.512223 8_2:+50723344 Msa1253300:three_prime_UTR
ACGGCCAGGATTCGCAGATC+CGG 0.513553 8_2:+50723642 Msa1253300:three_prime_UTR
GCGCTTGGGCGCTTAAATGA+TGG 0.515254 8_2:+50720120 Msa1253300:CDS
ATCAAGACGATGCACCCATA+AGG 0.516940 8_2:+50721809 Msa1253300:CDS
AACATCTTAAAAGGCTTAGG+TGG 0.517144 8_2:-50723271 None:intergenic
ACATCTTAAAAGGCTTAGGT+GGG 0.523192 8_2:-50723270 None:intergenic
AGAGAAAATTCGTGTTGCCA+TGG 0.524956 8_2:+50723199 Msa1253300:CDS
CTATGCGATCGTGTATTACA+GGG 0.525429 8_2:-50723715 None:intergenic
ATAGAATGTCATGTGCTCCT+TGG 0.526294 8_2:+50723734 Msa1253300:three_prime_UTR
GGTTGGGATGCGGTTCAAGC+AGG 0.529057 8_2:+50723663 Msa1253300:three_prime_UTR
AACTTCCGATGGTTTGGATG+AGG 0.529543 8_2:+50723145 Msa1253300:CDS
GCGAAGTCGGACCACCTTCA+CGG 0.537710 8_2:+50718534 Msa1253300:CDS
TCCTTGGTTATTACTCCTCA+AGG 0.539589 8_2:+50723750 Msa1253300:three_prime_UTR
GTGCATGGAGGGTTGCGCAT+AGG 0.540495 8_2:-50723418 None:intergenic
GAAAATGTCGCGGCGGACGA+TGG 0.542504 8_2:+50718503 Msa1253300:exon
GCGCTTAAATGATGGAGAAT+GGG 0.543995 8_2:+50720128 Msa1253300:CDS
CCACCACCGCCGACAAGAGT+CGG 0.545433 8_2:-50718479 None:intergenic
TGTCGCGGCGGACGATGGAG+TGG 0.547996 8_2:+50718508 Msa1253300:CDS
TGCTGCCTCATCCAAACCAT+CGG 0.562631 8_2:-50723150 None:intergenic
TTGATACTAAGTTAGCCAGA+TGG 0.567590 8_2:+50718866 Msa1253300:CDS
TGAGATATAAATAAACGGCC+AGG 0.569737 8_2:+50723628 Msa1253300:three_prime_UTR
GCATACCTATTACAAGAGGT+GGG 0.571063 8_2:+50720070 Msa1253300:CDS
AAATGGCTATTGCCCAGTCT+CGG 0.571200 8_2:+50723090 Msa1253300:CDS
ATAACACCTTAATTTCTCCA+TGG 0.579558 8_2:-50723216 None:intergenic
CATCTTAAAAGGCTTAGGTG+GGG 0.580503 8_2:-50723269 None:intergenic
CTCGTTCGTTCCAGACCCAA+AGG 0.584097 8_2:+50718660 Msa1253300:CDS
TGCACAGCCCAAAATTAGAT+GGG 0.585954 8_2:+50723436 Msa1253300:three_prime_UTR
CCATTTCACTCATTGCTGGA+AGG 0.590388 8_2:-50723073 None:intergenic
ATACCTATTACAAGAGGTGG+GGG 0.590840 8_2:+50720072 Msa1253300:CDS
GTCGCGGCGGACGATGGAGT+GGG 0.591023 8_2:+50718509 Msa1253300:CDS
GAGTGAGAACTCTCAACTTG+GGG 0.591146 8_2:+50723345 Msa1253300:three_prime_UTR
GAATGAATCATTCCGAGACT+GGG 0.595529 8_2:-50723102 None:intergenic
TGCGAGGTATGCCGTGAAGG+TGG 0.599802 8_2:-50718545 None:intergenic
TTGGATGATCCGGCAATGTG+GGG 0.611624 8_2:+50718823 Msa1253300:CDS
GGGTGGCCCAAAACTTCCGA+TGG 0.612018 8_2:+50723134 Msa1253300:CDS
TGGGTCTGGAACGAACGAGA+TGG 0.612106 8_2:-50718656 None:intergenic
CATACCTATTACAAGAGGTG+GGG 0.616369 8_2:+50720071 Msa1253300:CDS
AACGAGATGGAGAAGAGTGT+CGG 0.627315 8_2:-50718643 None:intergenic
TTATTGCATAATGGTAAAGG+AGG 0.636529 8_2:-50723011 None:intergenic
GATTGCTGACGGTGAGGAGA+GGG 0.641486 8_2:-50718686 None:intergenic
GCGGCGGACGATGGAGTGGG+CGG 0.643306 8_2:+50718512 Msa1253300:CDS
AGTGTCGGCGTTGTGAACGT+AGG 0.645647 8_2:-50718628 None:intergenic
TCAATCCTCTTATAGGCTAG+GGG 0.646060 8_2:+50723516 Msa1253300:three_prime_UTR
CGGTGGTGGGGAAAATGTCG+CGG 0.650559 8_2:+50718493 Msa1253300:exon
ATTCATTCCCTGCTATCGGG+TGG 0.650574 8_2:+50723117 Msa1253300:CDS
GTTTGGATGATCCGGCAATG+TGG 0.650697 8_2:+50718821 Msa1253300:intron
CCCATAAGGCGATTGAAATG+GGG 0.650823 8_2:+50721823 Msa1253300:CDS
CAATCGGAGTTATAGGTGCA+CGG 0.652808 8_2:-50721864 None:intergenic
AAATGCATACCTATTACAAG+AGG 0.660468 8_2:+50720066 Msa1253300:CDS
CGTGGACATGTGATTGCTGA+CGG 0.669121 8_2:-50718697 None:intergenic
TAAATAGGACAAGTACCTTG+AGG 0.675587 8_2:-50723765 None:intergenic
ATATCTCACAACAAATGACA+AGG 0.681224 8_2:-50723613 None:intergenic
AAGGCACTACTAAAATGCAA+AGG 0.685004 8_2:-50723594 None:intergenic
TGATTGCTGACGGTGAGGAG+AGG 0.686205 8_2:-50718687 None:intergenic
TCACTTCCGACTCTTGTCGG+CGG 0.689382 8_2:+50718473 Msa1253300:five_prime_UTR
AAAATCGTAATAGCAGCAGT+CGG 0.696242 8_2:+50718567 Msa1253300:CDS
ACATGTGATTGCTGACGGTG+AGG 0.711888 8_2:-50718692 None:intergenic
ACCTTGAGGAGTAATAACCA+AGG 0.731105 8_2:-50723751 None:intergenic
TACCTATTACAAGAGGTGGG+GGG 0.737152 8_2:+50720073 Msa1253300:CDS
TGGTGGGGAAAATGTCGCGG+CGG 0.738066 8_2:+50718496 Msa1253300:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAAACTAATCA+GGG - chr8_2:50718973-50718992 None:intergenic 15.0%
!! AAATCAAATTAAAACTAATC+AGG - chr8_2:50718974-50718993 None:intergenic 15.0%
!! CAATTACTCAAAAATAATAA+AGG + chr8_2:50719458-50719477 Msa1253300:intron 15.0%
!! AAAAATAATAAAGGTCTATT+TGG + chr8_2:50719467-50719486 Msa1253300:intron 15.0%
!!! ATTTCATTTTCACAAATAAT+AGG - chr8_2:50721021-50721040 None:intergenic 15.0%
!!! ATTTTAATAAACTTACATTC+TGG + chr8_2:50721051-50721070 Msa1253300:intron 15.0%
!! ATTAAGTGATAAAAAAAATC+TGG - chr8_2:50721149-50721168 None:intergenic 15.0%
!! ACAGTCAAATAAAAAAAAAT+AGG - chr8_2:50721350-50721369 None:intergenic 15.0%
!!! TATTATCTTAATCTTTTGAT+TGG - chr8_2:50722488-50722507 None:intergenic 15.0%
!! AAGAAGATTAACATAATTAT+TGG + chr8_2:50723032-50723051 Msa1253300:CDS 15.0%
!! AAAGTAAAAAATTACTAACT+AGG - chr8_2:50723548-50723567 None:intergenic 15.0%
!!! TTAGTTTTTGTAATGATGAT+TGG + chr8_2:50718773-50718792 Msa1253300:intron 20.0%
!! TACAAAATATAGTCAAATAG+CGG - chr8_2:50719096-50719115 None:intergenic 20.0%
!!! TATTTGACTATATTTTGTAG+TGG + chr8_2:50719097-50719116 Msa1253300:intron 20.0%
!! AATTTCACCATAATAATCAA+GGG - chr8_2:50719673-50719692 None:intergenic 20.0%
!! AAATTTCACCATAATAATCA+AGG - chr8_2:50719674-50719693 None:intergenic 20.0%
!! TGCATAAAAAAAACCAAAAT+TGG + chr8_2:50719704-50719723 Msa1253300:intron 20.0%
!!! AGAACAAATTTTGAAATCAA+GGG + chr8_2:50719743-50719762 Msa1253300:intron 20.0%
!! CTATTACTATTTAGTGTAAT+TGG + chr8_2:50719940-50719959 Msa1253300:intron 20.0%
!!! AAAATCATAGAAAAGTTTTC+AGG - chr8_2:50719998-50720017 None:intergenic 20.0%
!!! TAGTTTTGTTGTTTCTAAAA+TGG + chr8_2:50720029-50720048 Msa1253300:intron 20.0%
!! TATAATGAGAATGAATATTC+AGG + chr8_2:50720499-50720518 Msa1253300:intron 20.0%
!! ATAATGAGAATGAATATTCA+GGG + chr8_2:50720500-50720519 Msa1253300:intron 20.0%
!! GAATTCTCAAAGAAAAAATT+GGG - chr8_2:50720603-50720622 None:intergenic 20.0%
!! AGAATTCTCAAAGAAAAAAT+TGG - chr8_2:50720604-50720623 None:intergenic 20.0%
!! AGATTGTTTACCAAATAAAA+AGG - chr8_2:50720849-50720868 None:intergenic 20.0%
!! TAATAACCAATAAAACAGAA+GGG - chr8_2:50721320-50721339 None:intergenic 20.0%
!! AGAACAAAAGCTATAAAAAT+TGG + chr8_2:50721408-50721427 Msa1253300:intron 20.0%
!!! TTTCCTTGCTTTTTATATTT+GGG + chr8_2:50721511-50721530 Msa1253300:intron 20.0%
!!! ATTTTGCATCATGAATTTAT+AGG - chr8_2:50722132-50722151 None:intergenic 20.0%
!! TATAAATTTGTCGTAACAAA+AGG + chr8_2:50722347-50722366 Msa1253300:intron 20.0%
!! ATATATCTTAAGCATATGAT+TGG + chr8_2:50722597-50722616 Msa1253300:intron 20.0%
!! AAAGAAAAAAAAGTCTAGTA+CGG - chr8_2:50722653-50722672 None:intergenic 20.0%
!! AGAACATAATACAAGAAATA+TGG - chr8_2:50722757-50722776 None:intergenic 20.0%
!! TTAATCTTCTTATTGCATAA+TGG - chr8_2:50723023-50723042 None:intergenic 20.0%
!! CAAATTTGTAACATCTTAAA+AGG - chr8_2:50723283-50723302 None:intergenic 20.0%
!!! ATAGAATATTTTAGTTCTGT+AGG + chr8_2:50723387-50723406 Msa1253300:three_prime_UTR 20.0%
!!! TAGAATATTTTAGTTCTGTA+GGG + chr8_2:50723388-50723407 Msa1253300:three_prime_UTR 20.0%
!!! ATAATCATTTTTTCAAGAGA+AGG + chr8_2:50723470-50723489 Msa1253300:three_prime_UTR 20.0%
!! TGTTGTGAGATATAAATAAA+CGG + chr8_2:50723623-50723642 Msa1253300:three_prime_UTR 20.0%
! TTTGTAATGATGATTGGAAA+TGG + chr8_2:50718779-50718798 Msa1253300:intron 25.0%
! GCTAACTTAGTATCAAAAAT+AGG - chr8_2:50718862-50718881 None:intergenic 25.0%
! CGAAAAACATATGAATAAAG+TGG - chr8_2:50718925-50718944 None:intergenic 25.0%
! AATGTGAAAACTAAACATAC+CGG - chr8_2:50718950-50718969 None:intergenic 25.0%
! CTTATACATAAGCTCTTATA+TGG + chr8_2:50719337-50719356 Msa1253300:intron 25.0%
!!! GAGAACAAATTTTGAAATCA+AGG + chr8_2:50719742-50719761 Msa1253300:intron 25.0%
! AAAACTAAACTTGGACTAAT+TGG + chr8_2:50719898-50719917 Msa1253300:intron 25.0%
!! ACTCTTTTACGATGATAATT+TGG + chr8_2:50720195-50720214 Msa1253300:intron 25.0%
!! CTCTTTTACGATGATAATTT+GGG + chr8_2:50720196-50720215 Msa1253300:intron 25.0%
!! ATTCTCATTATAACACCTTT+TGG - chr8_2:50720491-50720510 None:intergenic 25.0%
! TAATGAGAATGAATATTCAG+GGG + chr8_2:50720501-50720520 Msa1253300:intron 25.0%
!!! TCTTGTTTTTGATGCATTTA+TGG + chr8_2:50720701-50720720 Msa1253300:intron 25.0%
!!! TGTTGGTTTTCCTTTTTATT+TGG + chr8_2:50720836-50720855 Msa1253300:intron 25.0%
!!! TATTGTCTACTCTGAAATAT+TGG + chr8_2:50721232-50721251 Msa1253300:intron 25.0%
!!! ATTGTCTACTCTGAAATATT+GGG + chr8_2:50721233-50721252 Msa1253300:intron 25.0%
!! AATAGAAGTATAGGATAAAC+AGG + chr8_2:50721279-50721298 Msa1253300:intron 25.0%
! CTAATAACCAATAAAACAGA+AGG - chr8_2:50721321-50721340 None:intergenic 25.0%
!!! CTTTCCTTGCTTTTTATATT+TGG + chr8_2:50721510-50721529 Msa1253300:intron 25.0%
!!! AACTTTGTATCTTTTAGTTC+TGG - chr8_2:50721634-50721653 None:intergenic 25.0%
!! GAATTTAGTTGTTAGACTTT+TGG + chr8_2:50722041-50722060 Msa1253300:intron 25.0%
! CCAAATAATTAGAAAATGAC+AGG - chr8_2:50722244-50722263 None:intergenic 25.0%
!!! CCTGTCATTTTCTAATTATT+TGG + chr8_2:50722241-50722260 Msa1253300:intron 25.0%
! AAGCATTAAGAAAAAGATCA+TGG - chr8_2:50722300-50722319 None:intergenic 25.0%
! TGTGATTCATATTTAGAAAC+TGG + chr8_2:50722704-50722723 Msa1253300:intron 25.0%
!! AATTTCTGCTTATGTTTTCT+AGG + chr8_2:50722956-50722975 Msa1253300:intron 25.0%
! TTCTTATTGCATAATGGTAA+AGG - chr8_2:50723017-50723036 None:intergenic 25.0%
!!! AGAATATTTTAGTTCTGTAG+GGG + chr8_2:50723389-50723408 Msa1253300:three_prime_UTR 25.0%
!! ATATTAGCCCATCTAATTTT+GGG - chr8_2:50723446-50723465 None:intergenic 25.0%
!! AATATTAGCCCATCTAATTT+TGG - chr8_2:50723447-50723466 None:intergenic 25.0%
! AATAAGGGAACAAACTAAAT+AGG - chr8_2:50723783-50723802 None:intergenic 25.0%
! TATTCATATGTTTTTCGCAC+CGG + chr8_2:50718928-50718947 Msa1253300:CDS 30.0%
AAATAGCTATTGTTCTGTGT+TGG + chr8_2:50719129-50719148 Msa1253300:intron 30.0%
! AGTTTGTTCAACTTCAACTA+CGG - chr8_2:50719266-50719285 None:intergenic 30.0%
ACTCAACTATACATTAACAC+AGG - chr8_2:50719416-50719435 None:intergenic 30.0%
TAATAAAGGTCTATTTGGTC+TGG + chr8_2:50719472-50719491 Msa1253300:intron 30.0%
!!! TCTGGCTTTTTTCTTTGTTT+TGG + chr8_2:50719490-50719509 Msa1253300:intron 30.0%
TTGAAAACATGTGTGAGAAA+TGG + chr8_2:50719536-50719555 Msa1253300:intron 30.0%
! TTTTCCCTAATAAGATAGGA+TGG + chr8_2:50719575-50719594 Msa1253300:intron 30.0%
TTTCCCTAATAAGATAGGAT+GGG + chr8_2:50719576-50719595 Msa1253300:intron 30.0%
TATCCCATCCTATCTTATTA+GGG - chr8_2:50719582-50719601 None:intergenic 30.0%
TTCTCAACCCTTGATTATTA+TGG + chr8_2:50719663-50719682 Msa1253300:intron 30.0%
! TAACAAATCGTCACCAATTT+TGG - chr8_2:50719720-50719739 None:intergenic 30.0%
! CTGAAGTACTATATAGTGAT+TGG - chr8_2:50719815-50719834 None:intergenic 30.0%
AAATATAGACGATGCACAAA+AGG - chr8_2:50719845-50719864 None:intergenic 30.0%
!!! TTTAGTTTTGCAAAGCGAAA+TGG - chr8_2:50719887-50719906 None:intergenic 30.0%
! TCTAAAATGGTAACATTCAC+AGG + chr8_2:50720042-50720061 Msa1253300:intron 30.0%
AAATGCATACCTATTACAAG+AGG + chr8_2:50720066-50720085 Msa1253300:CDS 30.0%
!!! TTATTGTCCTTGCTTTTTCT+CGG + chr8_2:50720271-50720290 Msa1253300:intron 30.0%
!! TTTTCTCGGTTGATGTTAAA+TGG + chr8_2:50720285-50720304 Msa1253300:intron 30.0%
CTTTCGTAAAGAGAAAATTG+TGG + chr8_2:50720923-50720942 Msa1253300:intron 30.0%
AAAAAAATCTGGTGAAGTTG+AGG - chr8_2:50721138-50721157 None:intergenic 30.0%
! CAAGCAGTTAATAGAAGTAT+AGG + chr8_2:50721270-50721289 Msa1253300:intron 30.0%
TATAGGATAAACAGGTTTGT+GGG + chr8_2:50721287-50721306 Msa1253300:intron 30.0%
!!! TGTTTTATTTGCTTGACCAT+TGG + chr8_2:50721367-50721386 Msa1253300:intron 30.0%
!!! GTTTTATTTGCTTGACCATT+GGG + chr8_2:50721368-50721387 Msa1253300:intron 30.0%
!! ATAAGATTGCGTTGATTTCA+TGG + chr8_2:50721431-50721450 Msa1253300:intron 30.0%
!! TAAGATTGCGTTGATTTCAT+GGG + chr8_2:50721432-50721451 Msa1253300:intron 30.0%
! TGTATTCCTCTATTACGTTT+TGG + chr8_2:50721554-50721573 Msa1253300:intron 30.0%
TGAACAATTGGCAATACAAT+CGG - chr8_2:50721883-50721902 None:intergenic 30.0%
TGAAAACCATGATGAACAAT+TGG - chr8_2:50721895-50721914 None:intergenic 30.0%
AGTGCTACAAATGGTATATA+AGG - chr8_2:50721973-50721992 None:intergenic 30.0%
!! TCAATTAGAAGTGCTACAAA+TGG - chr8_2:50721982-50722001 None:intergenic 30.0%
!!! AGTTGTTAGACTTTTGGAAT+TGG + chr8_2:50722047-50722066 Msa1253300:intron 30.0%
! ATCAGCAGTATTTTCTTACA+AGG + chr8_2:50722088-50722107 Msa1253300:intron 30.0%
AAATGACAGGACATATATCA+AGG - chr8_2:50722231-50722250 None:intergenic 30.0%
CTACTTGTGAGAATTATTGA+AGG + chr8_2:50722424-50722443 Msa1253300:intron 30.0%
! TTGATTGGTCATTGTTCAAT+GGG - chr8_2:50722473-50722492 None:intergenic 30.0%
! TTTGATTGGTCATTGTTCAA+TGG - chr8_2:50722474-50722493 None:intergenic 30.0%
ATGAGATACTTGCATAGTAA+CGG - chr8_2:50722846-50722865 None:intergenic 30.0%
!! TAATTTCGTTATGCTGATTC+TGG + chr8_2:50722922-50722941 Msa1253300:intron 30.0%
ATGCCAGAGAAATATATGTT+TGG + chr8_2:50722981-50723000 Msa1253300:CDS 30.0%
CTACCAAACATATATTTCTC+TGG - chr8_2:50722987-50723006 None:intergenic 30.0%
TTATTGCATAATGGTAAAGG+AGG - chr8_2:50723014-50723033 None:intergenic 30.0%
ATAACACCTTAATTTCTCCA+TGG - chr8_2:50723219-50723238 None:intergenic 30.0%
! ATGGAGAAATTAAGGTGTTA+TGG + chr8_2:50723218-50723237 Msa1253300:CDS 30.0%
TGTAACATCTTAAAAGGCTT+AGG - chr8_2:50723277-50723296 None:intergenic 30.0%
!!! TTTTAGCTCAATCCTCTTAT+AGG + chr8_2:50723509-50723528 Msa1253300:three_prime_UTR 30.0%
ATATCTCACAACAAATGACA+AGG - chr8_2:50723616-50723635 None:intergenic 30.0%
AAAATCGTAATAGCAGCAGT+CGG + chr8_2:50718567-50718586 Msa1253300:CDS 35.0%
! TTGTTGTTGTTGTTGCAGTT+TGG + chr8_2:50718804-50718823 Msa1253300:intron 35.0%
TTGATACTAAGTTAGCCAGA+TGG + chr8_2:50718866-50718885 Msa1253300:CDS 35.0%
TGATACTAAGTTAGCCAGAT+GGG + chr8_2:50718867-50718886 Msa1253300:CDS 35.0%
!! GTCGTTTTCCCTAATAAGAT+AGG + chr8_2:50719571-50719590 Msa1253300:intron 35.0%
CTATCCCATCCTATCTTATT+AGG - chr8_2:50719583-50719602 None:intergenic 35.0%
CTAATAAGATAGGATGGGAT+AGG + chr8_2:50719581-50719600 Msa1253300:intron 35.0%
! CTCTAACAAAGAAAGCGTAT+CGG + chr8_2:50719637-50719656 Msa1253300:intron 35.0%
TCGCTTTGCAAAACTAAACT+TGG + chr8_2:50719889-50719908 Msa1253300:intron 35.0%
CTAAACTTGGACTAATTGGA+AGG + chr8_2:50719902-50719921 Msa1253300:intron 35.0%
GTAAAAGAGTTATGCTTGTG+TGG - chr8_2:50720185-50720204 None:intergenic 35.0%
AAACTCTTAGCGATACTAGA+GGG - chr8_2:50720251-50720270 None:intergenic 35.0%
AAAACTCTTAGCGATACTAG+AGG - chr8_2:50720252-50720271 None:intergenic 35.0%
! TCTAGGATCATCTCATATTC+TGG - chr8_2:50720346-50720365 None:intergenic 35.0%
AGAATATGAGATGATCCTAG+AGG + chr8_2:50720345-50720364 Msa1253300:intron 35.0%
!! AATCACTCGTAGCTTTGATT+TGG - chr8_2:50720566-50720585 None:intergenic 35.0%
TTGTTATCCATGGCAGAAAA+TGG - chr8_2:50720653-50720672 None:intergenic 35.0%
!! CAGTTAAAGCTTGTTATCCA+TGG - chr8_2:50720663-50720682 None:intergenic 35.0%
! GATGCATTTATGGACTGAAT+TGG + chr8_2:50720711-50720730 Msa1253300:intron 35.0%
! AATCTTTCTTGTGTGTCACT+GGG + chr8_2:50720864-50720883 Msa1253300:intron 35.0%
! TTGAGCTTGATTTGACTAAG+AGG - chr8_2:50720989-50721008 None:intergenic 35.0%
GCTGCTTATCTTGAAAATGT+GGG + chr8_2:50721073-50721092 Msa1253300:intron 35.0%
!! ACTCTGAAATATTGGGTGAT+TGG + chr8_2:50721240-50721259 Msa1253300:intron 35.0%
GTATAGGATAAACAGGTTTG+TGG + chr8_2:50721286-50721305 Msa1253300:intron 35.0%
! GTATGTCCCTTCTGTTTTAT+TGG + chr8_2:50721311-50721330 Msa1253300:intron 35.0%
ATCAATTGTCAAACACCCAA+TGG - chr8_2:50721386-50721405 None:intergenic 35.0%
GATTTCATGGGTAAATTCAG+AGG + chr8_2:50721444-50721463 Msa1253300:intron 35.0%
ACTCAATTGTGGAAAGTTGA+TGG - chr8_2:50721470-50721489 None:intergenic 35.0%
GTGCCCAAATATAAAAAGCA+AGG - chr8_2:50721517-50721536 None:intergenic 35.0%
! TATTTGGGCACACTATTTTC+TGG + chr8_2:50721526-50721545 Msa1253300:intron 35.0%
TTCAGAGAACTTTCCATTTG+GGG - chr8_2:50721709-50721728 None:intergenic 35.0%
GTTCAGAGAACTTTCCATTT+GGG - chr8_2:50721710-50721729 None:intergenic 35.0%
AGTTCAGAGAACTTTCCATT+TGG - chr8_2:50721711-50721730 None:intergenic 35.0%
AAATGGAAAGTTCTCTGAAC+TGG + chr8_2:50721710-50721729 Msa1253300:intron 35.0%
! TCTTGATGAACTTTTCCTTC+TGG - chr8_2:50721796-50721815 None:intergenic 35.0%
GTATTGCCAATTGTTCATCA+TGG + chr8_2:50721886-50721905 Msa1253300:CDS 35.0%
! TGTTCATCATGGTTTTCATG+AGG + chr8_2:50721897-50721916 Msa1253300:CDS 35.0%
CTCTTTCCTCTAATACCTTT+GGG + chr8_2:50721935-50721954 Msa1253300:intron 35.0%
TCTTTCCTCTAATACCTTTG+GGG + chr8_2:50721936-50721955 Msa1253300:intron 35.0%
TAGTAATGAGCATGTATCGA+TGG + chr8_2:50722165-50722184 Msa1253300:intron 35.0%
TAATGCTTGCTTTCTTCTCA+AGG + chr8_2:50722312-50722331 Msa1253300:intron 35.0%
TGCAAGAGATTAGAGATCAA+AGG + chr8_2:50722397-50722416 Msa1253300:intron 35.0%
! TTTTTCTTTCTCTGCATGAC+CGG + chr8_2:50722664-50722683 Msa1253300:intron 35.0%
CAATAAGACAATTGCAGATC+CGG - chr8_2:50722686-50722705 None:intergenic 35.0%
ATACTTGCATAGTAACGGTT+AGG - chr8_2:50722841-50722860 None:intergenic 35.0%
AATGATTCATTCCCTGCTAT+CGG + chr8_2:50723113-50723132 Msa1253300:CDS 35.0%
ACATCTTAAAAGGCTTAGGT+GGG - chr8_2:50723273-50723292 None:intergenic 35.0%
AACATCTTAAAAGGCTTAGG+TGG - chr8_2:50723274-50723293 None:intergenic 35.0%
! AGAGAAGGTCAACAAGTTTT+AGG + chr8_2:50723485-50723504 Msa1253300:three_prime_UTR 35.0%
! GAGAAGGTCAACAAGTTTTA+GGG + chr8_2:50723486-50723505 Msa1253300:three_prime_UTR 35.0%
! AAGGCACTACTAAAATGCAA+AGG - chr8_2:50723597-50723616 None:intergenic 35.0%
TGAGATATAAATAAACGGCC+AGG + chr8_2:50723628-50723647 Msa1253300:three_prime_UTR 35.0%
TAAATAGGACAAGTACCTTG+AGG - chr8_2:50723768-50723787 None:intergenic 35.0%
! AGATGAAACTGTTTTCGCGA+AGG - chr8_2:50718595-50718614 None:intergenic 40.0%
TTGTTGCAGTTTGGATGATC+CGG + chr8_2:50718813-50718832 Msa1253300:intron 40.0%
GTGATGTCAATCGTAGATCA+TGG - chr8_2:50719297-50719316 None:intergenic 40.0%
TGCATACCTATTACAAGAGG+TGG + chr8_2:50720069-50720088 Msa1253300:CDS 40.0%
GCATACCTATTACAAGAGGT+GGG + chr8_2:50720070-50720089 Msa1253300:CDS 40.0%
CATACCTATTACAAGAGGTG+GGG + chr8_2:50720071-50720090 Msa1253300:CDS 40.0%
ATACCTATTACAAGAGGTGG+GGG + chr8_2:50720072-50720091 Msa1253300:CDS 40.0%
! GCGCTTAAATGATGGAGAAT+GGG + chr8_2:50720128-50720147 Msa1253300:CDS 40.0%
AAGAGTTATGCTTGTGTGGA+GGG - chr8_2:50720181-50720200 None:intergenic 40.0%
AAAGAGTTATGCTTGTGTGG+AGG - chr8_2:50720182-50720201 None:intergenic 40.0%
ACATCAACCGAGAAAAAGCA+AGG - chr8_2:50720281-50720300 None:intergenic 40.0%
GTAAGTAACAGACTCTCACT+AGG - chr8_2:50720458-50720477 None:intergenic 40.0%
CTTACTCTGTAGCATCCAAA+AGG + chr8_2:50720473-50720492 Msa1253300:intron 40.0%
TGAGAATGAATATTCAGGGG+AGG + chr8_2:50720504-50720523 Msa1253300:intron 40.0%
! TGGTTGCTAGAGCTTTGATT+TGG - chr8_2:50720633-50720652 None:intergenic 40.0%
CAATCTTTCTTGTGTGTCAC+TGG + chr8_2:50720863-50720882 Msa1253300:intron 40.0%
GGCTGCTTATCTTGAAAATG+TGG + chr8_2:50721072-50721091 Msa1253300:intron 40.0%
TTGCTAACGAGACTCAATTG+TGG - chr8_2:50721481-50721500 None:intergenic 40.0%
!! TTCCTCTATTACGTTTTGGC+AGG + chr8_2:50721558-50721577 Msa1253300:intron 40.0%
!! TCCTCTATTACGTTTTGGCA+GGG + chr8_2:50721559-50721578 Msa1253300:intron 40.0%
ATCTCCATAGAAGTTGCACA+CGG - chr8_2:50721591-50721610 None:intergenic 40.0%
!! TTGCATTTTAGTGCCCCAAA+TGG + chr8_2:50721693-50721712 Msa1253300:intron 40.0%
ACCCATAAGGCGATTGAAAT+GGG + chr8_2:50721822-50721841 Msa1253300:CDS 40.0%
GGCAATACAATCGGAGTTAT+AGG - chr8_2:50721874-50721893 None:intergenic 40.0%
!! CCAAAGGTATTAGAGGAAAG+AGG - chr8_2:50721937-50721956 None:intergenic 40.0%
CCTCTTTCCTCTAATACCTT+TGG + chr8_2:50721934-50721953 Msa1253300:intron 40.0%
GCTGGAAGGTCAAATTCAAT+TGG - chr8_2:50723062-50723081 None:intergenic 40.0%
ATAGCCATTTCACTCATTGC+TGG - chr8_2:50723080-50723099 None:intergenic 40.0%
GAATGAATCATTCCGAGACT+GGG - chr8_2:50723105-50723124 None:intergenic 40.0%
ATGATTCATTCCCTGCTATC+GGG + chr8_2:50723114-50723133 Msa1253300:CDS 40.0%
! TCCAAACCATCGGAAGTTTT+GGG - chr8_2:50723143-50723162 None:intergenic 40.0%
! ATCCAAACCATCGGAAGTTT+TGG - chr8_2:50723144-50723163 None:intergenic 40.0%
AGAGAAAATTCGTGTTGCCA+TGG + chr8_2:50723199-50723218 Msa1253300:CDS 40.0%
GTGTTGCCATGGAGAAATTA+AGG + chr8_2:50723210-50723229 Msa1253300:CDS 40.0%
CATCTTAAAAGGCTTAGGTG+GGG - chr8_2:50723272-50723291 None:intergenic 40.0%
TTGAGTGAGAACTCTCAACT+TGG + chr8_2:50723343-50723362 Msa1253300:three_prime_UTR 40.0%
TGAGTGAGAACTCTCAACTT+GGG + chr8_2:50723344-50723363 Msa1253300:three_prime_UTR 40.0%
!!! TTTTAGTTCTGTAGGGGCTT+TGG + chr8_2:50723395-50723414 Msa1253300:three_prime_UTR 40.0%
! ATCTAATTTTGGGCTGTGCA+TGG - chr8_2:50723436-50723455 None:intergenic 40.0%
ATGCACAGCCCAAAATTAGA+TGG + chr8_2:50723435-50723454 Msa1253300:three_prime_UTR 40.0%
TGCACAGCCCAAAATTAGAT+GGG + chr8_2:50723436-50723455 Msa1253300:three_prime_UTR 40.0%
CTCAATCCTCTTATAGGCTA+GGG + chr8_2:50723515-50723534 Msa1253300:three_prime_UTR 40.0%
TCAATCCTCTTATAGGCTAG+GGG + chr8_2:50723516-50723535 Msa1253300:three_prime_UTR 40.0%
TTTATCCCCTAGCCTATAAG+AGG - chr8_2:50723524-50723543 None:intergenic 40.0%
CTATGCGATCGTGTATTACA+GGG - chr8_2:50723718-50723737 None:intergenic 40.0%
TCTATGCGATCGTGTATTAC+AGG - chr8_2:50723719-50723738 None:intergenic 40.0%
ATAGAATGTCATGTGCTCCT+TGG + chr8_2:50723734-50723753 Msa1253300:three_prime_UTR 40.0%
TCCTTGGTTATTACTCCTCA+AGG + chr8_2:50723750-50723769 Msa1253300:three_prime_UTR 40.0%
ACCTTGAGGAGTAATAACCA+AGG - chr8_2:50723754-50723773 None:intergenic 40.0%
GAATCACTTCCGACTCTTGT+CGG + chr8_2:50718470-50718489 Msa1253300:five_prime_UTR 45.0%
! GCTGCTATTACGATTTTGCG+AGG - chr8_2:50718564-50718583 None:intergenic 45.0%
! AACGAGATGGAGAAGAGTGT+CGG - chr8_2:50718646-50718665 None:intergenic 45.0%
TTTGGATGATCCGGCAATGT+GGG + chr8_2:50718822-50718841 Msa1253300:CDS 45.0%
TGCTATAGTGAGTGCTACCA+TGG + chr8_2:50719067-50719086 Msa1253300:intron 45.0%
GCTATAGTGAGTGCTACCAT+GGG + chr8_2:50719068-50719087 Msa1253300:intron 45.0%
TGGATATTCAGCCTTCAGTG+TGG + chr8_2:50719149-50719168 Msa1253300:intron 45.0%
TAGGATGGGATAGGAACATG+TGG + chr8_2:50719590-50719609 Msa1253300:intron 45.0%
AGGATGGGATAGGAACATGT+GGG + chr8_2:50719591-50719610 Msa1253300:intron 45.0%
! CTTTGTTAGAGCACTCTAGC+AGG - chr8_2:50719628-50719647 None:intergenic 45.0%
TACCTATTACAAGAGGTGGG+GGG + chr8_2:50720073-50720092 Msa1253300:CDS 45.0%
! AGCACATGAATGAAGCGCTT+GGG + chr8_2:50720106-50720125 Msa1253300:CDS 45.0%
! GGCGCTTAAATGATGGAGAA+TGG + chr8_2:50720127-50720146 Msa1253300:CDS 45.0%
GATCCTAGAGGACAGATAGT+AGG + chr8_2:50720357-50720376 Msa1253300:intron 45.0%
AGTAGGCACCTATTGTCTCA+TGG + chr8_2:50720374-50720393 Msa1253300:intron 45.0%
GTAGGCACCTATTGTCTCAT+GGG + chr8_2:50720375-50720394 Msa1253300:intron 45.0%
! GTGTTGACCCATGAGACAAT+AGG - chr8_2:50720385-50720404 None:intergenic 45.0%
CTCATGGGTCAACACTTGAT+AGG + chr8_2:50720390-50720409 Msa1253300:intron 45.0%
GGGTCAACACTTGATAGGAA+AGG + chr8_2:50720395-50720414 Msa1253300:intron 45.0%
TGATAGGAAAGGTCTACACG+AGG + chr8_2:50720406-50720425 Msa1253300:intron 45.0%
TCTAAGAAAGTGGCCAGGAT+GGG + chr8_2:50720432-50720451 Msa1253300:intron 45.0%
! CTAGCAACCATTTTCTGCCA+TGG + chr8_2:50720643-50720662 Msa1253300:intron 45.0%
GAAGAGTAGCGATGCAAAGA+AGG + chr8_2:50720735-50720754 Msa1253300:intron 45.0%
! TTTCTTGTGTGTCACTGGGT+GGG + chr8_2:50720868-50720887 Msa1253300:intron 45.0%
GGATGTAAAAGAAGCCACTG+TGG + chr8_2:50720944-50720963 Msa1253300:intron 45.0%
AAGAAGCCACTGTGGTTTAG+TGG + chr8_2:50720952-50720971 Msa1253300:intron 45.0%
AGAAGCCACTGTGGTTTAGT+GGG + chr8_2:50720953-50720972 Msa1253300:intron 45.0%
ACCCTGCCAAAACGTAATAG+AGG - chr8_2:50721563-50721582 None:intergenic 45.0%
ATCTCCGTGTGCAACTTCTA+TGG + chr8_2:50721584-50721603 Msa1253300:intron 45.0%
! GGAAAAGTATGCAGCTGCAA+TGG - chr8_2:50721775-50721794 None:intergenic 45.0%
! CAGCTGCATACTTTTCCAGA+AGG + chr8_2:50721778-50721797 Msa1253300:intron 45.0%
ATCAAGACGATGCACCCATA+AGG + chr8_2:50721809-50721828 Msa1253300:CDS 45.0%
CACCCATAAGGCGATTGAAA+TGG + chr8_2:50721821-50721840 Msa1253300:CDS 45.0%
CCCCATTTCAATCGCCTTAT+GGG - chr8_2:50721826-50721845 None:intergenic 45.0%
CCCATAAGGCGATTGAAATG+GGG + chr8_2:50721823-50721842 Msa1253300:CDS 45.0%
TCCCCATTTCAATCGCCTTA+TGG - chr8_2:50721827-50721846 None:intergenic 45.0%
CAATCGGAGTTATAGGTGCA+CGG - chr8_2:50721867-50721886 None:intergenic 45.0%
!! TCGAACCCCAAAGGTATTAG+AGG - chr8_2:50721944-50721963 None:intergenic 45.0%
!! TCTAATACCTTTGGGGTTCG+AGG + chr8_2:50721943-50721962 Msa1253300:intron 45.0%
ACTACGAGCACAGTGCTTAT+TGG - chr8_2:50722627-50722646 None:intergenic 45.0%
GCATAGTAACGGTTAGGCAT+AGG - chr8_2:50722835-50722854 None:intergenic 45.0%
! GTTTTTGCGCTGTCGTATTG+TGG + chr8_2:50722882-50722901 Msa1253300:intron 45.0%
CCATTTCACTCATTGCTGGA+AGG - chr8_2:50723076-50723095 None:intergenic 45.0%
CCTTCCAGCAATGAGTGAAA+TGG + chr8_2:50723073-50723092 Msa1253300:CDS 45.0%
AAATGGCTATTGCCCAGTCT+CGG + chr8_2:50723090-50723109 Msa1253300:CDS 45.0%
GGAATGAATCATTCCGAGAC+TGG - chr8_2:50723106-50723125 None:intergenic 45.0%
! AACTTCCGATGGTTTGGATG+AGG + chr8_2:50723145-50723164 Msa1253300:CDS 45.0%
GAGTGAGAACTCTCAACTTG+GGG + chr8_2:50723345-50723364 Msa1253300:three_prime_UTR 45.0%
! AATTTTGGGCTGTGCATGGA+GGG - chr8_2:50723432-50723451 None:intergenic 45.0%
! TAATTTTGGGCTGTGCATGG+AGG - chr8_2:50723433-50723452 None:intergenic 45.0%
GCTCAATCCTCTTATAGGCT+AGG + chr8_2:50723514-50723533 Msa1253300:three_prime_UTR 45.0%
! TTTTGCGAGGTATGCCGTGA+AGG - chr8_2:50718551-50718570 None:intergenic 50.0%
ACATGTGATTGCTGACGGTG+AGG - chr8_2:50718695-50718714 None:intergenic 50.0%
CGTGGACATGTGATTGCTGA+CGG - chr8_2:50718700-50718719 None:intergenic 50.0%
GTTTGGATGATCCGGCAATG+TGG + chr8_2:50718821-50718840 Msa1253300:intron 50.0%
TTGGATGATCCGGCAATGTG+GGG + chr8_2:50718823-50718842 Msa1253300:CDS 50.0%
TCCGGCAATGTGGGGATTTA+AGG + chr8_2:50718831-50718850 Msa1253300:CDS 50.0%
CCCTTAAATCCCCACATTGC+CGG - chr8_2:50718835-50718854 None:intergenic 50.0%
CCGGCAATGTGGGGATTTAA+GGG + chr8_2:50718832-50718851 Msa1253300:CDS 50.0%
TTCAGCAGCAAGAACCCATC+TGG - chr8_2:50718884-50718903 None:intergenic 50.0%
TAGTCAAATAGCGGCTCCCA+TGG - chr8_2:50719087-50719106 None:intergenic 50.0%
GATGTTGGAGGCTGCAATGA+AGG - chr8_2:50719211-50719230 None:intergenic 50.0%
ATAGCCGTTGGAGATGTTGG+AGG - chr8_2:50719223-50719242 None:intergenic 50.0%
GCTATAGCCGTTGGAGATGT+TGG - chr8_2:50719226-50719245 None:intergenic 50.0%
TATAGCGCTGCTATAGCCGT+TGG - chr8_2:50719235-50719254 None:intergenic 50.0%
! GTTAGAGCACTCTAGCAGGA+AGG - chr8_2:50719624-50719643 None:intergenic 50.0%
ATCCCCCCACCTCTTGTAAT+AGG - chr8_2:50720078-50720097 None:intergenic 50.0%
! GAGCACATGAATGAAGCGCT+TGG + chr8_2:50720105-50720124 Msa1253300:CDS 50.0%
ATGCTTGTGTGGAGGGAAGA+AGG - chr8_2:50720174-50720193 None:intergenic 50.0%
GTGCCTACTATCTGTCCTCT+AGG - chr8_2:50720363-50720382 None:intergenic 50.0%
TAGGAAAGGTCTACACGAGG+CGG + chr8_2:50720409-50720428 Msa1253300:intron 50.0%
GTCTAAGAAAGTGGCCAGGA+TGG + chr8_2:50720431-50720450 Msa1253300:intron 50.0%
CCAACACTGATCAAGCTTCG+TGG - chr8_2:50720822-50720841 None:intergenic 50.0%
CCACGAAGCTTGATCAGTGT+TGG + chr8_2:50720819-50720838 Msa1253300:intron 50.0%
! CTTTCTTGTGTGTCACTGGG+TGG + chr8_2:50720867-50720886 Msa1253300:intron 50.0%
GTGTTCCCACTAAACCACAG+TGG - chr8_2:50720961-50720980 None:intergenic 50.0%
ATTCATTCCCTGCTATCGGG+TGG + chr8_2:50723117-50723136 Msa1253300:CDS 50.0%
GCCCAAAACTTCCGATGGTT+TGG + chr8_2:50723139-50723158 Msa1253300:CDS 50.0%
TGCTGCCTCATCCAAACCAT+CGG - chr8_2:50723153-50723172 None:intergenic 50.0%
TCACTTCCGACTCTTGTCGG+CGG + chr8_2:50718473-50718492 Msa1253300:five_prime_UTR 55.0%
!! AGTGTCGGCGTTGTGAACGT+AGG - chr8_2:50718631-50718650 None:intergenic 55.0%
! TGGGTCTGGAACGAACGAGA+TGG - chr8_2:50718659-50718678 None:intergenic 55.0%
CTCGTTCGTTCCAGACCCAA+AGG + chr8_2:50718660-50718679 Msa1253300:CDS 55.0%
GTGAGGAGAGGGATGCCTTT+GGG - chr8_2:50718678-50718697 None:intergenic 55.0%
GATTGCTGACGGTGAGGAGA+GGG - chr8_2:50718689-50718708 None:intergenic 55.0%
TGATTGCTGACGGTGAGGAG+AGG - chr8_2:50718690-50718709 None:intergenic 55.0%
AGAGAGAGAGAGAGCTGACG+TGG - chr8_2:50718718-50718737 None:intergenic 55.0%
TGTCCCTAGTCGCCTAGTTG+CGG + chr8_2:50719174-50719193 Msa1253300:intron 55.0%
AAGCCGCAACTAGGCGACTA+GGG - chr8_2:50719180-50719199 None:intergenic 55.0%
AAAGCCGCAACTAGGCGACT+AGG - chr8_2:50719181-50719200 None:intergenic 55.0%
! AGTCGCCTAGTTGCGGCTTT+TGG + chr8_2:50719181-50719200 Msa1253300:intron 55.0%
! GTCGCCTAGTTGCGGCTTTT+GGG + chr8_2:50719182-50719201 Msa1253300:intron 55.0%
GCAACCCAAAAGCCGCAACT+AGG - chr8_2:50719189-50719208 None:intergenic 55.0%
GCAGCCTCCAACATCTCCAA+CGG + chr8_2:50719216-50719235 Msa1253300:intron 55.0%
GCGCTTGGGCGCTTAAATGA+TGG + chr8_2:50720120-50720139 Msa1253300:CDS 55.0%
CACGAGGCGGTCTAAGAAAG+TGG + chr8_2:50720422-50720441 Msa1253300:intron 55.0%
AGGCAATCCTCGAACCCCAA+AGG - chr8_2:50721953-50721972 None:intergenic 55.0%
! TTTTGGGCCACCCGATAGCA+GGG - chr8_2:50723127-50723146 None:intergenic 55.0%
CAGGATTCGCAGATCCGGTT+GGG + chr8_2:50723647-50723666 Msa1253300:three_prime_UTR 55.0%
TGCTTGAACCGCATCCCAAC+CGG - chr8_2:50723664-50723683 None:intergenic 55.0%
!! CGGTGGTGGGGAAAATGTCG+CGG + chr8_2:50718493-50718512 Msa1253300:exon 60.0%
TGGTGGGGAAAATGTCGCGG+CGG + chr8_2:50718496-50718515 Msa1253300:exon 60.0%
GAAAATGTCGCGGCGGACGA+TGG + chr8_2:50718503-50718522 Msa1253300:exon 60.0%
GCGAAGTCGGACCACCTTCA+CGG + chr8_2:50718534-50718553 Msa1253300:CDS 60.0%
TGCGAGGTATGCCGTGAAGG+TGG - chr8_2:50718548-50718567 None:intergenic 60.0%
GAGAGGGATGCCTTTGGGTC+TGG - chr8_2:50718673-50718692 None:intergenic 60.0%
GGTGAGGAGAGGGATGCCTT+TGG - chr8_2:50718679-50718698 None:intergenic 60.0%
CTAGGGACAGGCCACACTGA+AGG - chr8_2:50719163-50719182 None:intergenic 60.0%
GCAACTAGGCGACTAGGGAC+AGG - chr8_2:50719175-50719194 None:intergenic 60.0%
GGCGGTCTAAGAAAGTGGCC+AGG + chr8_2:50720427-50720446 Msa1253300:intron 60.0%
GACTCTCACTAGGCCCATCC+TGG - chr8_2:50720448-50720467 None:intergenic 60.0%
!! GTTTTGGGCCACCCGATAGC+AGG - chr8_2:50723128-50723147 None:intergenic 60.0%
GGGTGGCCCAAAACTTCCGA+TGG + chr8_2:50723134-50723153 Msa1253300:CDS 60.0%
GTGCATGGAGGGTTGCGCAT+AGG - chr8_2:50723421-50723440 None:intergenic 60.0%
ACGGCCAGGATTCGCAGATC+CGG + chr8_2:50723642-50723661 Msa1253300:three_prime_UTR 60.0%
CCAACCGGATCTGCGAATCC+TGG - chr8_2:50723649-50723668 None:intergenic 60.0%
CCAGGATTCGCAGATCCGGT+TGG + chr8_2:50723646-50723665 Msa1253300:three_prime_UTR 60.0%
TCGCAGATCCGGTTGGGATG+CGG + chr8_2:50723653-50723672 Msa1253300:three_prime_UTR 60.0%
GGTTGGGATGCGGTTCAAGC+AGG + chr8_2:50723663-50723682 Msa1253300:three_prime_UTR 60.0%
CTTCCGACTCTTGTCGGCGG+TGG + chr8_2:50718476-50718495 Msa1253300:five_prime_UTR 65.0%
CCACCACCGCCGACAAGAGT+CGG - chr8_2:50718482-50718501 None:intergenic 65.0%
CGACTCTTGTCGGCGGTGGT+GGG + chr8_2:50718480-50718499 Msa1253300:five_prime_UTR 65.0%
GACTCTTGTCGGCGGTGGTG+GGG + chr8_2:50718481-50718500 Msa1253300:five_prime_UTR 65.0%
GATGGAGTGGGCGGCGAAGT+CGG + chr8_2:50718521-50718540 Msa1253300:CDS 65.0%
CCGACTCTTGTCGGCGGTGG+TGG + chr8_2:50718479-50718498 Msa1253300:five_prime_UTR 70.0%
TGTCGCGGCGGACGATGGAG+TGG + chr8_2:50718508-50718527 Msa1253300:CDS 70.0%
GTCGCGGCGGACGATGGAGT+GGG + chr8_2:50718509-50718528 Msa1253300:CDS 70.0%
GCGGCGGACGATGGAGTGGG+CGG + chr8_2:50718512-50718531 Msa1253300:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50718460 50723803 50718460 ID=Msa1253300;Name=Msa1253300
chr8_2 mRNA 50718460 50723803 50718460 ID=Msa1253300-mRNA-1;Parent=Msa1253300;Name=Msa1253300-mRNA-1;_AED=0.27;_eAED=0.27;_QI=47|1|1|1|0.75|0.8|5|541|282
chr8_2 exon 50718460 50718718 50718460 ID=Msa1253300-mRNA-1:exon:15478;Parent=Msa1253300-mRNA-1
chr8_2 exon 50718822 50718949 50718822 ID=Msa1253300-mRNA-1:exon:15479;Parent=Msa1253300-mRNA-1
chr8_2 exon 50720064 50720149 50720064 ID=Msa1253300-mRNA-1:exon:15480;Parent=Msa1253300-mRNA-1
chr8_2 exon 50721781 50721918 50721781 ID=Msa1253300-mRNA-1:exon:15481;Parent=Msa1253300-mRNA-1
chr8_2 exon 50722978 50723803 50722978 ID=Msa1253300-mRNA-1:exon:15482;Parent=Msa1253300-mRNA-1
chr8_2 five_prime_UTR 50718460 50718506 50718460 ID=Msa1253300-mRNA-1:five_prime_utr;Parent=Msa1253300-mRNA-1
chr8_2 CDS 50718507 50718718 50718507 ID=Msa1253300-mRNA-1:cds;Parent=Msa1253300-mRNA-1
chr8_2 CDS 50718822 50718949 50718822 ID=Msa1253300-mRNA-1:cds;Parent=Msa1253300-mRNA-1
chr8_2 CDS 50720064 50720149 50720064 ID=Msa1253300-mRNA-1:cds;Parent=Msa1253300-mRNA-1
chr8_2 CDS 50721781 50721918 50721781 ID=Msa1253300-mRNA-1:cds;Parent=Msa1253300-mRNA-1
chr8_2 CDS 50722978 50723262 50722978 ID=Msa1253300-mRNA-1:cds;Parent=Msa1253300-mRNA-1
chr8_2 three_prime_UTR 50723263 50723803 50723263 ID=Msa1253300-mRNA-1:three_prime_utr;Parent=Msa1253300-mRNA-1
Gene Sequence

>Msa1253300

ATGTCGCGGCGGACGATGGAGTGGGCGGCGAAGTCGGACCACCTTCACGGCATACCTCGCAAAATCGTAATAGCAGCAGTCGGTTCCTTCGCGAAAACAGTTTCATCTCTCATCAACACAACCTACGTTCACAACGCCGACACTCTTCTCCATCTCGTTCGTTCCAGACCCAAAGGCATCCCTCTCCTCACCGTCAGCAATCACATGTCCACTTTGGATGATCCGGCAATGTGGGGATTTAAGGGTTTTCCTATTTTTGATACTAAGTTAGCCAGATGGGTTCTTGCTGCTGAAGATATTTGTTTTAGAAATCCACTTTATTCATATGTTTTTCGCACCGGAAAATGCATACCTATTACAAGAGGTGGGGGGATTTATCAAGAGCACATGAATGAAGCGCTTGGGCGCTTAAATGATGGAGAATGGCTGCATACTTTTCCAGAAGGAAAAGTTCATCAAGACGATGCACCCATAAGGCGATTGAAATGGGGAACTGCTAGTCTAATCGTCCGTGCACCTATAACTCCGATTGTATTGCCAATTGTTCATCATGGTTTTCATGAGGTGATGCCAGAGAAATATATGTTTGGTAGACGACCTCCTTTACCATTATGCAATAAGAAGATTAACATAATTATTGGCGATCCAATTGAATTTGACCTTCCAGCAATGAGTGAAATGGCTATTGCCCAGTCTCGGAATGATTCATTCCCTGCTATCGGGTGGCCCAAAACTTCCGATGGTTTGGATGAGGCAGCACAACGATATCTGTACACTACACTTTCAGAGAAAATTCGTGTTGCCATGGAGAAATTAAGGTGTTATGGTAAAAGTTTTCTGAAGTCTTAA
Protein sequence

>Msa1253300

MSRRTMEWAAKSDHLHGIPRKIVIAAVGSFAKTVSSLINTTYVHNADTLLHLVRSRPKGIPLLTVSNHMSTLDDPAMWGFKGFPIFDTKLARWVLAAEDICFRNPLYSYVFRTGKCIPITRGGGIYQEHMNEALGRLNDGEWLHTFPEGKVHQDDAPIRRLKWGTASLIVRAPITPIVLPIVHHGFHEVMPEKYMFGRRPPLPLCNKKINIIIGDPIEFDLPAMSEMAIAQSRNDSFPAIGWPKTSDGLDEAAQRYLYTTLSEKIRVAMEKLRCYGKSFLKS*