Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224200 | XP_003597592.1 | 92.643 | 367 | 26 | 1 | 1 | 366 | 1 | 367 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224200 | sp|Q70Z18|NAP1B_TOBAC | 67.027 | 370 | 110 | 3 | 6 | 366 | 11 | 377 | 3.01e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224200 | Q2HVE3 | 92.643 | 367 | 26 | 1 | 1 | 366 | 1 | 367 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0224200 | -0.821636 | 3.634185e-53 | -8.615850e-47 |
| Msa0025090 | Msa0224200 | -0.812647 | 3.815287e-51 | -8.615850e-47 |
| Msa0072590 | Msa0224200 | -0.814692 | 1.353327e-51 | -8.615850e-47 |
| Msa0081700 | Msa0224200 | -0.820844 | 5.534141e-53 | -8.615850e-47 |
| Msa0083200 | Msa0224200 | -0.837345 | 5.491182e-57 | -8.615850e-47 |
| Msa0099090 | Msa0224200 | -0.831965 | 1.237938e-55 | -8.615850e-47 |
| Msa0099350 | Msa0224200 | -0.801287 | 9.669976e-49 | -8.615850e-47 |
| Msa0099430 | Msa0224200 | -0.804345 | 2.259148e-49 | -8.615850e-47 |
| Msa0148000 | Msa0224200 | -0.828521 | 8.583903e-55 | -8.615850e-47 |
| Msa0198140 | Msa0224200 | -0.806412 | 8.331437e-50 | -8.615850e-47 |
| Msa0198220 | Msa0224200 | -0.802063 | 6.702639e-49 | -8.615850e-47 |
| Msa0200090 | Msa0224200 | 0.815923 | 7.207872e-52 | -8.615850e-47 |
| Msa0224200 | Msa0232660 | -0.816036 | 6.801690e-52 | -8.615850e-47 |
| Msa0224200 | Msa0242720 | 0.817752 | 2.802332e-52 | -8.615850e-47 |
| Msa0224200 | Msa0278340 | -0.800050 | 1.728639e-48 | -8.615850e-47 |
| Msa0224200 | Msa0294200 | 0.828420 | 9.081830e-55 | -8.615850e-47 |
| Msa0224200 | Msa0307430 | 0.811552 | 6.611187e-51 | -8.615850e-47 |
| Msa0224200 | Msa0340270 | 0.804938 | 1.698761e-49 | -8.615850e-47 |
| Msa0224200 | Msa0362440 | -0.800457 | 1.428611e-48 | -8.615850e-47 |
| Msa0224200 | Msa0370350 | -0.808312 | 3.294909e-50 | -8.615850e-47 |
| Msa0224200 | Msa0375930 | -0.818078 | 2.364135e-52 | -8.615850e-47 |
| Msa0224200 | Msa0385280 | -0.800188 | 1.620627e-48 | -8.615850e-47 |
| Msa0224200 | Msa0415910 | -0.806010 | 1.012514e-49 | -8.615850e-47 |
| Msa0224200 | Msa0417850 | -0.812701 | 3.713480e-51 | -8.615850e-47 |
| Msa0224200 | Msa0421080 | 0.803321 | 3.686627e-49 | -8.615850e-47 |
| Msa0224200 | Msa0424570 | -0.819319 | 1.236108e-52 | -8.615850e-47 |
| Msa0224200 | Msa0483160 | -0.805499 | 1.296405e-49 | -8.615850e-47 |
| Msa0224200 | Msa0516000 | -0.814123 | 1.808198e-51 | -8.615850e-47 |
| Msa0224200 | Msa0526840 | -0.829619 | 4.651491e-55 | -8.615850e-47 |
| Msa0224200 | Msa0537210 | 0.816237 | 6.133058e-52 | -8.615850e-47 |
| Msa0224200 | Msa0549550 | -0.828364 | 9.369016e-55 | -8.615850e-47 |
| Msa0224200 | Msa0554770 | -0.800324 | 1.520087e-48 | -8.615850e-47 |
| Msa0224200 | Msa0559440 | -0.833834 | 4.247987e-56 | -8.615850e-47 |
| Msa0224200 | Msa0559640 | -0.832339 | 1.000443e-55 | -8.615850e-47 |
| Msa0224200 | Msa0593600 | 0.812527 | 4.053891e-51 | -8.615850e-47 |
| Msa0224200 | Msa0604890 | -0.822806 | 1.944637e-53 | -8.615850e-47 |
| Msa0224200 | Msa0617470 | -0.802290 | 6.016727e-49 | -8.615850e-47 |
| Msa0224200 | Msa0619300 | 0.835039 | 2.116172e-56 | -8.615850e-47 |
| Msa0224200 | Msa0629030 | 0.801721 | 7.876931e-49 | -8.615850e-47 |
| Msa0224200 | Msa0635070 | -0.804215 | 2.403767e-49 | -8.615850e-47 |
| Msa0224200 | Msa0646180 | -0.821735 | 3.446864e-53 | -8.615850e-47 |
| Msa0224200 | Msa0654400 | -0.805312 | 1.418898e-49 | -8.615850e-47 |
| Msa0224200 | Msa0654500 | -0.823025 | 1.729551e-53 | -8.615850e-47 |
| Msa0224200 | Msa0666580 | 0.804358 | 2.245213e-49 | -8.615850e-47 |
| Msa0224200 | Msa0672090 | 0.807213 | 5.640944e-50 | -8.615850e-47 |
| Msa0224200 | Msa0685390 | -0.823215 | 1.561572e-53 | -8.615850e-47 |
| Msa0224200 | Msa0704690 | 0.809507 | 1.828596e-50 | -8.615850e-47 |
| Msa0224200 | Msa0722660 | -0.804451 | 2.147153e-49 | -8.615850e-47 |
| Msa0224200 | Msa0734690 | 0.800763 | 1.237136e-48 | -8.615850e-47 |
| Msa0224200 | Msa0741600 | -0.832002 | 1.212089e-55 | -8.615850e-47 |
| Msa0224200 | Msa0742690 | -0.827373 | 1.622024e-54 | -8.615850e-47 |
| Msa0224200 | Msa0776260 | 0.800379 | 1.481664e-48 | -8.615850e-47 |
| Msa0224200 | Msa0779830 | -0.831026 | 2.107385e-55 | -8.615850e-47 |
| Msa0224200 | Msa0781800 | 0.847269 | 1.286447e-59 | -8.615850e-47 |
| Msa0224200 | Msa0815650 | 0.854952 | 8.734734e-62 | -8.615850e-47 |
| Msa0224200 | Msa0827560 | -0.830122 | 3.508113e-55 | -8.615850e-47 |
| Msa0224200 | Msa0828350 | 0.820978 | 5.154758e-53 | -8.615850e-47 |
| Msa0224200 | Msa0829770 | -0.819232 | 1.294108e-52 | -8.615850e-47 |
| Msa0224200 | Msa0854160 | 0.807746 | 4.347596e-50 | -8.615850e-47 |
| Msa0224200 | Msa0862750 | -0.822660 | 2.103783e-53 | -8.615850e-47 |
| Msa0224200 | Msa0870220 | -0.851165 | 1.060257e-60 | -8.615850e-47 |
| Msa0224200 | Msa0878090 | -0.801700 | 7.957459e-49 | -8.615850e-47 |
| Msa0224200 | Msa0903460 | -0.848697 | 5.196689e-60 | -8.615850e-47 |
| Msa0224200 | Msa0906100 | -0.801283 | 9.684873e-49 | -8.615850e-47 |
| Msa0224200 | Msa0934290 | -0.804619 | 1.980162e-49 | -8.615850e-47 |
| Msa0224200 | Msa0935930 | -0.855939 | 4.505722e-62 | -8.615850e-47 |
| Msa0224200 | Msa0971780 | -0.804066 | 2.581569e-49 | -8.615850e-47 |
| Msa0224200 | Msa0972930 | -0.835682 | 1.455869e-56 | -8.615850e-47 |
| Msa0224200 | Msa1016450 | -0.807449 | 5.027662e-50 | -8.615850e-47 |
| Msa0224200 | Msa1025220 | 0.802880 | 4.547821e-49 | -8.615850e-47 |
| Msa0224200 | Msa1029200 | -0.805812 | 1.114212e-49 | -8.615850e-47 |
| Msa0224200 | Msa1057940 | -0.837892 | 3.975747e-57 | -8.615850e-47 |
| Msa0224200 | Msa1078280 | -0.802221 | 6.216683e-49 | -8.615850e-47 |
| Msa0224200 | Msa1090020 | -0.800152 | 1.647684e-48 | -8.615850e-47 |
| Msa0224200 | Msa1104020 | -0.825143 | 5.503180e-54 | -8.615850e-47 |
| Msa0224200 | Msa1129470 | -0.804895 | 1.734306e-49 | -8.615850e-47 |
| Msa0224200 | Msa1130860 | -0.810024 | 1.416041e-50 | -8.615850e-47 |
| Msa0224200 | Msa1130920 | -0.817521 | 3.158527e-52 | -8.615850e-47 |
| Msa0224200 | Msa1147600 | -0.802420 | 5.657659e-49 | -8.615850e-47 |
| Msa0224200 | Msa1154770 | -0.801347 | 9.400225e-49 | -8.615850e-47 |
| Msa0224200 | Msa1169780 | -0.801843 | 7.435314e-49 | -8.615850e-47 |
| Msa0224200 | Msa1221520 | 0.817337 | 3.474629e-52 | -8.615850e-47 |
| Msa0224200 | Msa1235590 | 0.820843 | 5.535760e-53 | -8.615850e-47 |
| Msa0224200 | Msa1264940 | 0.814090 | 1.838580e-51 | -8.615850e-47 |
| Msa0224200 | Msa1275220 | 0.828730 | 7.641420e-55 | -8.615850e-47 |
| Msa0224200 | Msa1299220 | 0.806657 | 7.395568e-50 | -8.615850e-47 |
| Msa0224200 | Msa1303150 | 0.822438 | 2.369139e-53 | -8.615850e-47 |
| Msa0224200 | Msa1313720 | 0.811295 | 7.518302e-51 | -8.615850e-47 |
| Msa0224200 | Msa1328860 | 0.808644 | 2.799444e-50 | -8.615850e-47 |
| Msa0224200 | Msa1334000 | 0.811276 | 7.591154e-51 | -8.615850e-47 |
| Msa0224200 | Msa1359880 | -0.820158 | 7.950362e-53 | -8.615850e-47 |
| Msa0224200 | Msa1375640 | 0.816191 | 6.279931e-52 | -8.615850e-47 |
| Msa0224200 | Msa1398310 | -0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0224200 | Msa1414560 | -0.821681 | 3.548549e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224200 | MtrunA17_Chr2g0330141 | 92.643 | 367 | 26 | 1 | 1 | 366 | 1 | 367 | 0.0 | 559 |
| Msa0224200 | MtrunA17_Chr2g0299501 | 66.116 | 363 | 117 | 4 | 6 | 366 | 11 | 369 | 1.19e-137 | 396 |
| Msa0224200 | MtrunA17_Chr2g0299511 | 62.451 | 253 | 90 | 2 | 44 | 296 | 5 | 252 | 3.75e-115 | 337 |
| Msa0224200 | MtrunA17_Chr2g0299521 | 51.136 | 264 | 88 | 4 | 20 | 279 | 18 | 244 | 6.00e-73 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224200 | AT2G19480.3 | 64.850 | 367 | 123 | 3 | 5 | 366 | 7 | 372 | 1.41e-140 | 404 |
| Msa0224200 | AT2G19480.2 | 70.408 | 294 | 84 | 2 | 5 | 296 | 7 | 299 | 2.20e-138 | 399 |
| Msa0224200 | AT2G19480.1 | 70.408 | 294 | 84 | 2 | 5 | 296 | 7 | 299 | 2.70e-138 | 399 |
| Msa0224200 | AT5G56950.1 | 63.144 | 369 | 128 | 4 | 5 | 366 | 7 | 374 | 3.37e-137 | 395 |
| Msa0224200 | AT4G26110.2 | 68.013 | 297 | 91 | 2 | 5 | 298 | 7 | 302 | 1.31e-136 | 394 |
| Msa0224200 | AT4G26110.1 | 68.013 | 297 | 91 | 2 | 5 | 298 | 7 | 302 | 1.50e-136 | 394 |
| Msa0224200 | AT3G13782.2 | 53.289 | 304 | 115 | 5 | 2 | 296 | 13 | 298 | 4.83e-97 | 291 |
| Msa0224200 | AT3G13782.1 | 53.289 | 304 | 115 | 5 | 2 | 296 | 13 | 298 | 4.83e-97 | 291 |
| Msa0224200 | AT1G74560.3 | 29.911 | 224 | 117 | 6 | 53 | 270 | 31 | 220 | 1.07e-19 | 88.2 |
| Msa0224200 | AT1G74560.1 | 29.151 | 271 | 137 | 8 | 53 | 321 | 31 | 248 | 7.65e-14 | 71.2 |
| Msa0224200 | AT1G18800.1 | 29.455 | 275 | 137 | 9 | 53 | 324 | 27 | 247 | 1.13e-13 | 70.9 |
Find 112 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTCTCTGCTTGGGATTCT+TGG | 0.143021 | 2_1:+74006979 | Msa0224200:three_prime_UTR |
| TTCCCCAAAGATAAACAATT+TGG | 0.145133 | 2_1:+74007228 | Msa0224200:three_prime_UTR |
| ATGGAGCATGATTATGATAT+TGG | 0.178236 | 2_1:+74005741 | Msa0224200:CDS |
| TATCCCAAATTGTTTATCTT+TGG | 0.219804 | 2_1:-74007232 | None:intergenic |
| ATCCCAAATTGTTTATCTTT+GGG | 0.237343 | 2_1:-74007231 | None:intergenic |
| CCTATTGATTTCTCTAATAT+AGG | 0.244249 | 2_1:-74005352 | None:intergenic |
| CGTCATCATCCTCGGGAATC+TGG | 0.256403 | 2_1:-74005596 | None:intergenic |
| TGAAGAGCTTCAAAATTTAA+TGG | 0.286494 | 2_1:+74005722 | Msa0224200:CDS |
| AATGAAGACTAATGAAATAT+TGG | 0.305931 | 2_1:+74005076 | Msa0224200:CDS |
| AGAAAGGAGTCCCTAGCTTT+TGG | 0.317796 | 2_1:+74005045 | Msa0224200:CDS |
| TGACTGATCTTTACCAGGTT+TGG | 0.330775 | 2_1:-74006743 | None:intergenic |
| CTATTGATTTCTCTAATATA+GGG | 0.335034 | 2_1:-74005351 | None:intergenic |
| CCTATATTAGAGAAATCAAT+AGG | 0.345836 | 2_1:+74005352 | Msa0224200:CDS |
| GTAGGATAAGCTTCAGCTCT+TGG | 0.371162 | 2_1:+74003830 | Msa0224200:intron |
| AAAGTGGTTCATAAAGCTTC+TGG | 0.375481 | 2_1:-74004478 | None:intergenic |
| ATGAAAGAAATGAAGAAAAC+TGG | 0.380385 | 2_1:-74003370 | None:intergenic |
| GTTCTCTGCTTGGGATTCTT+GGG | 0.380738 | 2_1:+74006980 | Msa0224200:three_prime_UTR |
| TCCCCAAAGATAAACAATTT+GGG | 0.382037 | 2_1:+74007229 | Msa0224200:three_prime_UTR |
| ATCAATTTCGTCATCATCCT+CGG | 0.387289 | 2_1:-74005604 | None:intergenic |
| GTATAATTACTGTTAGAGTC+TGG | 0.389827 | 2_1:+74006876 | Msa0224200:three_prime_UTR |
| TTAGTTGTGTGCAACATTCC+TGG | 0.395630 | 2_1:+74006833 | Msa0224200:three_prime_UTR |
| GATAAGCTTCAGCTCTTGGC+TGG | 0.400903 | 2_1:+74003834 | Msa0224200:CDS |
| TGGAGCATGATTATGATATT+GGG | 0.401577 | 2_1:+74005742 | Msa0224200:CDS |
| GTCATCATCCTCGGGAATCT+GGG | 0.405862 | 2_1:-74005595 | None:intergenic |
| AGAAATAAAATCAATATCAA+TGG | 0.406750 | 2_1:-74007017 | None:intergenic |
| TCATGCTGTGTCATGGTTCA+CGG | 0.413395 | 2_1:+74006397 | Msa0224200:CDS |
| AGGAGGAAGACGAAGGGAAG+GGG | 0.415086 | 2_1:+74006537 | Msa0224200:CDS |
| TTAGTTGTGTGCAACATTCC+TGG | 0.420747 | 2_1:+74006802 | Msa0224200:three_prime_UTR |
| GATCTTCCCGCTGCCGCCGC+CGG | 0.433634 | 2_1:+74003412 | Msa0224200:CDS |
| GCAGAGCGAACATGATGAAT+TGG | 0.440473 | 2_1:+74004412 | Msa0224200:intron |
| TCAACACGTTGCCTGACATT+AGG | 0.442995 | 2_1:-74003888 | None:intergenic |
| TACTGCTGCTTGCAATCAGC+AGG | 0.443739 | 2_1:-74006775 | None:intergenic |
| AACTCCAGCTTGAAACCCTT+GGG | 0.448772 | 2_1:-74005256 | None:intergenic |
| GAGGAGGAAGACGAAGGGAA+GGG | 0.455702 | 2_1:+74006536 | Msa0224200:CDS |
| ATGAAGACTAATGAAATATT+GGG | 0.458634 | 2_1:+74005077 | Msa0224200:CDS |
| ATGTTACCGGCGGCGGCAGC+GGG | 0.460017 | 2_1:-74003418 | None:intergenic |
| TTTGTGTCAAGCACTTTCCT+GGG | 0.461063 | 2_1:-74005476 | None:intergenic |
| TGAGGAGGAAGACGAAGGGA+AGG | 0.464687 | 2_1:+74006535 | Msa0224200:CDS |
| AATTACAAACGAAGCAGGAC+AGG | 0.467567 | 2_1:+74004910 | Msa0224200:CDS |
| CTGGCAAAGGAGGAGGGAAA+TGG | 0.469776 | 2_1:-74003351 | None:intergenic |
| ATTGCAGTTAACCAAAAGCT+AGG | 0.474607 | 2_1:-74005056 | None:intergenic |
| GATGTTACCGGCGGCGGCAG+CGG | 0.475914 | 2_1:-74003419 | None:intergenic |
| AAACTCCAGCTTGAAACCCT+TGG | 0.483887 | 2_1:-74005257 | None:intergenic |
| TATAATTACTGTTAGAGTCT+GGG | 0.484035 | 2_1:+74006877 | Msa0224200:three_prime_UTR |
| ACACACACCTTTGTGTAAAG+TGG | 0.485158 | 2_1:-74004494 | None:intergenic |
| TCCCAAATTGTTTATCTTTG+GGG | 0.493268 | 2_1:-74007230 | None:intergenic |
| TTTAGAGGAGCGAGCTCAGT+TGG | 0.495888 | 2_1:+74004445 | Msa0224200:CDS |
| GAAATAAAATCAATATCAAT+GGG | 0.496039 | 2_1:-74007016 | None:intergenic |
| GGCGGCGGCAGCGGGAAGAT+CGG | 0.499586 | 2_1:-74003410 | None:intergenic |
| AAGAAAACTGGCAAAGGAGG+AGG | 0.501162 | 2_1:-74003358 | None:intergenic |
| AGAACGAAAATATTAACAAA+AGG | 0.507393 | 2_1:-74006962 | None:intergenic |
| ATCACAGTAATATCATGTCT+CGG | 0.508222 | 2_1:-74007276 | None:intergenic |
| CATGCTGTGTCATGGTTCAC+GGG | 0.510537 | 2_1:+74006398 | Msa0224200:CDS |
| AGACAGAGATGAAGATGAAG+AGG | 0.511035 | 2_1:+74006472 | Msa0224200:CDS |
| CAATCCCAAGGGTTTCAAGC+TGG | 0.511184 | 2_1:+74005252 | Msa0224200:CDS |
| CGGCTGATGAATCATGCAAT+TGG | 0.511955 | 2_1:+74007188 | Msa0224200:three_prime_UTR |
| ATAAGCTTCAGCTCTTGGCT+GGG | 0.519230 | 2_1:+74003835 | Msa0224200:CDS |
| TCACAGTAATATCATGTCTC+GGG | 0.519951 | 2_1:-74007275 | None:intergenic |
| AAACACTTTCGCCTAATGTC+AGG | 0.521826 | 2_1:+74003877 | Msa0224200:CDS |
| AGGAAAGTGCTTGACACAAA+AGG | 0.521935 | 2_1:+74005479 | Msa0224200:CDS |
| TGAGGATGAAGATGATGAGG+AGG | 0.524386 | 2_1:+74006520 | Msa0224200:CDS |
| ATGATGAGGAGGAAGACGAA+GGG | 0.532918 | 2_1:+74006531 | Msa0224200:CDS |
| GATGATGAGGAGGAAGACGA+AGG | 0.535181 | 2_1:+74006530 | Msa0224200:CDS |
| GGGAAGATCGGCGGATTGAT+CGG | 0.536009 | 2_1:-74003398 | None:intergenic |
| TCAATTTCGTCATCATCCTC+GGG | 0.537035 | 2_1:-74005603 | None:intergenic |
| TCATCCTCGGGAATCTGGGG+AGG | 0.537400 | 2_1:-74005591 | None:intergenic |
| ATATTAACAAAAGGAAAGAC+AGG | 0.538854 | 2_1:-74006953 | None:intergenic |
| TGATGACGATGAAGAGGATG+AGG | 0.541376 | 2_1:+74006502 | Msa0224200:CDS |
| TAATGTCAGGCAACGTGTTG+AGG | 0.542732 | 2_1:+74003890 | Msa0224200:CDS |
| TAATGAAATATTGGGTGAAG+AGG | 0.544626 | 2_1:+74005085 | Msa0224200:CDS |
| GGATGAGGATGAAGATGATG+AGG | 0.546840 | 2_1:+74006517 | Msa0224200:CDS |
| TCAGTTGACTGATCTTTACC+AGG | 0.547286 | 2_1:-74006748 | None:intergenic |
| AGTGGTAGCAAGGCCAAACC+TGG | 0.552380 | 2_1:+74006730 | Msa0224200:CDS |
| TAAGCTTCAGCTCTTGGCTG+GGG | 0.556329 | 2_1:+74003836 | Msa0224200:CDS |
| TTATTCCTCATGCTGTGTCA+TGG | 0.556398 | 2_1:+74006390 | Msa0224200:CDS |
| TGTGTCATGGTTCACGGGAG+AGG | 0.556613 | 2_1:+74006403 | Msa0224200:CDS |
| AGTATCTCAAAGATATCAAG+TGG | 0.556691 | 2_1:+74005218 | Msa0224200:CDS |
| GGCGGCAGCGGGAAGATCGG+CGG | 0.558135 | 2_1:-74003407 | None:intergenic |
| TAGAGGTACGAGATTGTCAA+TGG | 0.558349 | 2_1:+74004869 | Msa0224200:intron |
| CACAAAAGGTTATGAAGAAG+AGG | 0.558627 | 2_1:+74005493 | Msa0224200:CDS |
| ACACAACTAAACATATATCC+AGG | 0.563277 | 2_1:-74006820 | None:intergenic |
| CTATATTAGAGAAATCAATA+GGG | 0.565007 | 2_1:+74005353 | Msa0224200:CDS |
| ATGAAGAAGAGGCCAAAGAA+AGG | 0.565048 | 2_1:+74005504 | Msa0224200:CDS |
| AATGGTGTTATTGACGTTGA+AGG | 0.565526 | 2_1:+74004887 | Msa0224200:CDS |
| GAAATTGATGTTACCGGCGG+CGG | 0.568217 | 2_1:-74003425 | None:intergenic |
| ATGAAGAAAACTGGCAAAGG+AGG | 0.569417 | 2_1:-74003361 | None:intergenic |
| TGGGGATCGTGTGGATGTCA+TGG | 0.574954 | 2_1:+74003854 | Msa0224200:CDS |
| GAAATGAAGAAAACTGGCAA+AGG | 0.576848 | 2_1:-74003364 | None:intergenic |
| CATCCTCGGGAATCTGGGGA+GGG | 0.576916 | 2_1:-74005590 | None:intergenic |
| AGTGTATCAAATTCTGCGAT+CGG | 0.577008 | 2_1:+74007168 | Msa0224200:three_prime_UTR |
| CTCAGTGCTGAAGATCGTGC+TGG | 0.579116 | 2_1:+74003598 | Msa0224200:CDS |
| ACTGCTGCTTGCAATCAGCA+GGG | 0.579841 | 2_1:-74006774 | None:intergenic |
| ACGGAAATTGAGTGGCACCC+AGG | 0.582717 | 2_1:+74005459 | Msa0224200:CDS |
| GCTCTTGGCTGGGGATCGTG+TGG | 0.587567 | 2_1:+74003845 | Msa0224200:CDS |
| GAAGGAATTACAAACGAAGC+AGG | 0.588859 | 2_1:+74004905 | Msa0224200:CDS |
| TGATAGAATAAACATAGCAA+TGG | 0.594296 | 2_1:-74007134 | None:intergenic |
| TGATGATGATGACGATGAAG+AGG | 0.595217 | 2_1:+74006496 | Msa0224200:CDS |
| TTGCAGTTAACCAAAAGCTA+GGG | 0.595713 | 2_1:-74005055 | None:intergenic |
| TTAACTGCAGAGTGGTAGCA+AGG | 0.597517 | 2_1:+74006720 | Msa0224200:intron |
| TCATCATCCTCGGGAATCTG+GGG | 0.622634 | 2_1:-74005594 | None:intergenic |
| GAAGGGGAAGAACAAGAGCA+AGG | 0.624049 | 2_1:+74006553 | Msa0224200:CDS |
| GAAGAAAGCAAAGCTGCTGA+AGG | 0.627950 | 2_1:+74004935 | Msa0224200:CDS |
| CAACCCTCCCCAGATTCCCG+AGG | 0.628448 | 2_1:+74005587 | Msa0224200:CDS |
| GAGTAAACTTGACAATCCCA+AGG | 0.632238 | 2_1:+74005240 | Msa0224200:CDS |
| GATCACTGAACGTGATGAGG+AGG | 0.639093 | 2_1:+74005189 | Msa0224200:intron |
| TTATGAACCACTTTACACAA+AGG | 0.641292 | 2_1:+74004487 | Msa0224200:CDS |
| AGAAAACTGGCAAAGGAGGA+GGG | 0.642577 | 2_1:-74003357 | None:intergenic |
| ATTGTAGAACGGAAATTGAG+TGG | 0.652316 | 2_1:+74005451 | Msa0224200:intron |
| ATTACAAACGAAGCAGGACA+GGG | 0.657529 | 2_1:+74004911 | Msa0224200:CDS |
| ATAGATCACTGAACGTGATG+AGG | 0.688272 | 2_1:+74005186 | Msa0224200:intron |
| AGTAAACTTGACAATCCCAA+GGG | 0.689310 | 2_1:+74005241 | Msa0224200:CDS |
| GTGAACCATGACACAGCATG+AGG | 0.722020 | 2_1:-74006395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTCTCAAATTATTA+TGG | + | chr2_1:74004213-74004232 | Msa0224200:intron | 10.0% |
| !!! | TTATTTTCTCAAATTATTAT+GGG | + | chr2_1:74004214-74004233 | Msa0224200:intron | 10.0% |
| !! | AAGAATTAATATTAACTAAA+GGG | + | chr2_1:74006165-74006184 | Msa0224200:intron | 10.0% |
| !! | AAAGGAAAAAAAAAAAAAAT+TGG | + | chr2_1:74006191-74006210 | Msa0224200:intron | 10.0% |
| !! | AAAAAAAAAAAAATTGGAAA+AGG | + | chr2_1:74006197-74006216 | Msa0224200:intron | 10.0% |
| !!! | TTTTATTTCTCATTTTTTAT+TGG | + | chr2_1:74007030-74007049 | Msa0224200:three_prime_UTR | 10.0% |
| !!! | TTTATTTCTCATTTTTTATT+GGG | + | chr2_1:74007031-74007050 | Msa0224200:three_prime_UTR | 10.0% |
| !!! | GCTATTTTTATAAGTTATAT+TGG | - | chr2_1:74004639-74004658 | None:intergenic | 15.0% |
| !! | TATATGAAATAATTAACAGA+TGG | - | chr2_1:74005144-74005163 | None:intergenic | 15.0% |
| !!! | CAATATCTTTTAATTTCTTA+GGG | + | chr2_1:74005380-74005399 | Msa0224200:intron | 15.0% |
| !! | GAAGAATTAATATTAACTAA+AGG | + | chr2_1:74006164-74006183 | Msa0224200:intron | 15.0% |
| !! | GAAGAATTAATATTAACTTA+AGG | + | chr2_1:74006224-74006243 | Msa0224200:intron | 15.0% |
| !! | ATTAACTTAAGGAAAAAAAA+TGG | + | chr2_1:74006235-74006254 | Msa0224200:intron | 15.0% |
| !! | GAAATAAAATCAATATCAAT+GGG | - | chr2_1:74007019-74007038 | None:intergenic | 15.0% |
| !! | AGAAATAAAATCAATATCAA+TGG | - | chr2_1:74007020-74007039 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTGGGTTTTAAA+AGG | + | chr2_1:74007041-74007060 | Msa0224200:three_prime_UTR | 15.0% |
| !!! | TATCTAAGTAATCAGAATTT+TGG | + | chr2_1:74003670-74003689 | Msa0224200:intron | 20.0% |
| !!! | GTGATTAAATTATTTTGTCA+CGG | + | chr2_1:74004005-74004024 | Msa0224200:intron | 20.0% |
| !!! | GTTTAATTTCTTTTTTGTTG+TGG | + | chr2_1:74004300-74004319 | Msa0224200:intron | 20.0% |
| !!! | TTTCATTTTTACATTAGCAA+GGG | + | chr2_1:74004356-74004375 | Msa0224200:intron | 20.0% |
| !!! | TATTATCTGTTGTTTGTTTA+TGG | + | chr2_1:74004843-74004862 | Msa0224200:intron | 20.0% |
| !! | AATGAAGACTAATGAAATAT+TGG | + | chr2_1:74005076-74005095 | Msa0224200:CDS | 20.0% |
| !! | ATGAAGACTAATGAAATATT+GGG | + | chr2_1:74005077-74005096 | Msa0224200:CDS | 20.0% |
| !!! | CTATTGATTTCTCTAATATA+GGG | - | chr2_1:74005354-74005373 | None:intergenic | 20.0% |
| !! | CTATATTAGAGAAATCAATA+GGG | + | chr2_1:74005353-74005372 | Msa0224200:CDS | 20.0% |
| !!! | GCAATATCTTTTAATTTCTT+AGG | + | chr2_1:74005379-74005398 | Msa0224200:intron | 20.0% |
| !!! | CATTTTTCTGTTTTTATGAT+TGG | - | chr2_1:74005546-74005565 | None:intergenic | 20.0% |
| !!! | GAATTTACTCTGTTTTTATT+AGG | + | chr2_1:74005874-74005893 | Msa0224200:intron | 20.0% |
| !! | GAACTGATATTAACTTAAAA+CGG | + | chr2_1:74006093-74006112 | Msa0224200:intron | 20.0% |
| !! | GAAGAAGTAATATTAACTTA+AGG | + | chr2_1:74006120-74006139 | Msa0224200:intron | 20.0% |
| !! | ATTAACTTAAGGAAAAAAGT+TGG | + | chr2_1:74006131-74006150 | Msa0224200:intron | 20.0% |
| !! | ATATTAACTAAAGGGAAAAA+AGG | + | chr2_1:74006173-74006192 | Msa0224200:intron | 20.0% |
| !! | TCAAAAAACAAAATAGTACT+AGG | - | chr2_1:74006327-74006346 | None:intergenic | 20.0% |
| !!! | TAGTACTATTTTGTTTTTTG+AGG | + | chr2_1:74006326-74006345 | Msa0224200:intron | 20.0% |
| !! | AGAACGAAAATATTAACAAA+AGG | - | chr2_1:74006965-74006984 | None:intergenic | 20.0% |
| ! | ATGAAAGAAATGAAGAAAAC+TGG | - | chr2_1:74003373-74003392 | None:intergenic | 25.0% |
| !!! | AGTAGTTGATAAAGTTACTA+GGG | - | chr2_1:74003498-74003517 | None:intergenic | 25.0% |
| !!! | TAGTAGTTGATAAAGTTACT+AGG | - | chr2_1:74003499-74003518 | None:intergenic | 25.0% |
| !! | GGATAATGATTTTGAATTAG+AGG | - | chr2_1:74003527-74003546 | None:intergenic | 25.0% |
| ! | TATCCAATTGATTAAAACCT+AGG | + | chr2_1:74003542-74003561 | Msa0224200:intron | 25.0% |
| !! | AAACTATAGTGTTGTTATGA+TGG | + | chr2_1:74003728-74003747 | Msa0224200:intron | 25.0% |
| !!! | GTTTCATTTTTACATTAGCA+AGG | + | chr2_1:74004355-74004374 | Msa0224200:intron | 25.0% |
| ! | CCAATAGATAAGCTAAAATA+AGG | - | chr2_1:74004528-74004547 | None:intergenic | 25.0% |
| !!! | CCTTATTTTAGCTTATCTAT+TGG | + | chr2_1:74004525-74004544 | Msa0224200:intron | 25.0% |
| !!! | GTTTACATAAGCTATTTTCA+TGG | - | chr2_1:74004705-74004724 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTATGGTTATAG+AGG | + | chr2_1:74004852-74004871 | Msa0224200:intron | 25.0% |
| !!! | CCTATTGATTTCTCTAATAT+AGG | - | chr2_1:74005355-74005374 | None:intergenic | 25.0% |
| ! | CCTATATTAGAGAAATCAAT+AGG | + | chr2_1:74005352-74005371 | Msa0224200:CDS | 25.0% |
| !!! | TTCTGTTTTTATGATTGGTT+TGG | - | chr2_1:74005541-74005560 | None:intergenic | 25.0% |
| ! | TGAAGAGCTTCAAAATTTAA+TGG | + | chr2_1:74005722-74005741 | Msa0224200:CDS | 25.0% |
| !! | TTTCAACTAATACTTTTGAG+TGG | - | chr2_1:74005955-74005974 | None:intergenic | 25.0% |
| !!! | ACTCAAAAGTATTAGTTGAA+AGG | + | chr2_1:74005954-74005973 | Msa0224200:intron | 25.0% |
| ! | TTAAGGAAAAAAGTTGGAAA+AGG | + | chr2_1:74006137-74006156 | Msa0224200:intron | 25.0% |
| ! | AACTTAAGGAAAAAAAATGG+TGG | + | chr2_1:74006238-74006257 | Msa0224200:intron | 25.0% |
| ! | ACTTAAGGAAAAAAAATGGT+GGG | + | chr2_1:74006239-74006258 | Msa0224200:intron | 25.0% |
| ! | TATAATTACTGTTAGAGTCT+GGG | + | chr2_1:74006877-74006896 | Msa0224200:three_prime_UTR | 25.0% |
| !! | AGTTTTACATTAATATGGTG+AGG | + | chr2_1:74006921-74006940 | Msa0224200:three_prime_UTR | 25.0% |
| ! | ATATTAACAAAAGGAAAGAC+AGG | - | chr2_1:74006956-74006975 | None:intergenic | 25.0% |
| ! | TGATAGAATAAACATAGCAA+TGG | - | chr2_1:74007137-74007156 | None:intergenic | 25.0% |
| ! | ATCCCAAATTGTTTATCTTT+GGG | - | chr2_1:74007234-74007253 | None:intergenic | 25.0% |
| ! | TATCCCAAATTGTTTATCTT+TGG | - | chr2_1:74007235-74007254 | None:intergenic | 25.0% |
| GAAAGTGAAATTGATGTTAC+CGG | - | chr2_1:74003434-74003453 | None:intergenic | 30.0% | |
| !! | AGACCTAGGTTTTAATCAAT+TGG | - | chr2_1:74003548-74003567 | None:intergenic | 30.0% |
| CAACAGTATAATTTAGACCT+AGG | - | chr2_1:74003562-74003581 | None:intergenic | 30.0% | |
| !!! | ATTTTTTACTGTTCCCTTTG+TGG | + | chr2_1:74003779-74003798 | Msa0224200:intron | 30.0% |
| TTCACAAACAATTCCACAAA+GGG | - | chr2_1:74003795-74003814 | None:intergenic | 30.0% | |
| TTTCACAAACAATTCCACAA+AGG | - | chr2_1:74003796-74003815 | None:intergenic | 30.0% | |
| TTGTCACGGATACAAATATT+TGG | + | chr2_1:74004019-74004038 | Msa0224200:intron | 30.0% | |
| TGTCACGGATACAAATATTT+GGG | + | chr2_1:74004020-74004039 | Msa0224200:intron | 30.0% | |
| TTGAACGTAATCACATGTAT+CGG | - | chr2_1:74004189-74004208 | None:intergenic | 30.0% | |
| !! | ATTGGAGAGTAAGTTTTTAG+AGG | + | chr2_1:74004430-74004449 | Msa0224200:CDS | 30.0% |
| TTATGAACCACTTTACACAA+AGG | + | chr2_1:74004487-74004506 | Msa0224200:CDS | 30.0% | |
| TATAAGTTGTTTGTCCAAAC+AGG | + | chr2_1:74004761-74004780 | Msa0224200:intron | 30.0% | |
| ATCAGAAAATTAGACACTAC+GGG | - | chr2_1:74004787-74004806 | None:intergenic | 30.0% | |
| CATCAGAAAATTAGACACTA+CGG | - | chr2_1:74004788-74004807 | None:intergenic | 30.0% | |
| GTATCAAAGGAGAATGTATA+TGG | - | chr2_1:74004999-74005018 | None:intergenic | 30.0% | |
| AAGATTCAGGATAGTATCAA+AGG | - | chr2_1:74005012-74005031 | None:intergenic | 30.0% | |
| CTGAATTATACGAAAGATTC+AGG | - | chr2_1:74005025-74005044 | None:intergenic | 30.0% | |
| CTTTCGTATAATTCAGAGAA+AGG | + | chr2_1:74005029-74005048 | Msa0224200:intron | 30.0% | |
| TAATGAAATATTGGGTGAAG+AGG | + | chr2_1:74005085-74005104 | Msa0224200:CDS | 30.0% | |
| AGTATCTCAAAGATATCAAG+TGG | + | chr2_1:74005218-74005237 | Msa0224200:CDS | 30.0% | |
| ! | TTTTTGTTAGCACGGAATTT+TGG | - | chr2_1:74005306-74005325 | None:intergenic | 30.0% |
| !! | GTGATATGTTTTTGTTAGCA+CGG | - | chr2_1:74005314-74005333 | None:intergenic | 30.0% |
| TTTGCTTGAACATTGTAGAA+CGG | + | chr2_1:74005440-74005459 | Msa0224200:intron | 30.0% | |
| !!! | GCATTTTTTGATCCTTTCTT+TGG | - | chr2_1:74005519-74005538 | None:intergenic | 30.0% |
| ATGGAGCATGATTATGATAT+TGG | + | chr2_1:74005741-74005760 | Msa0224200:CDS | 30.0% | |
| TGGAGCATGATTATGATATT+GGG | + | chr2_1:74005742-74005761 | Msa0224200:CDS | 30.0% | |
| ! | TCTTATTCTTTTGATGTGAG+TGG | + | chr2_1:74005795-74005814 | Msa0224200:intron | 30.0% |
| TGAAGCCATGATTATGATAT+TGG | + | chr2_1:74005818-74005837 | Msa0224200:intron | 30.0% | |
| GGATACCAATATCATAATCA+TGG | - | chr2_1:74005826-74005845 | None:intergenic | 30.0% | |
| CTTAAGGAAAAAAAATGGTG+GGG | + | chr2_1:74006240-74006259 | Msa0224200:intron | 30.0% | |
| TTAAGGAAAAAAAATGGTGG+GGG | + | chr2_1:74006241-74006260 | Msa0224200:intron | 30.0% | |
| ! | CATGAGGAATAATTTTGTCT+CGG | - | chr2_1:74006382-74006401 | None:intergenic | 30.0% |
| TTAACTCTCTGCTAAACTAT+GGG | + | chr2_1:74006661-74006680 | Msa0224200:intron | 30.0% | |
| ACACAACTAAACATATATCC+AGG | - | chr2_1:74006823-74006842 | None:intergenic | 30.0% | |
| CTGACAAAAAACATATATCC+AGG | - | chr2_1:74006854-74006873 | None:intergenic | 30.0% | |
| !!! | GGATATATGTTTTTTGTCAG+TGG | + | chr2_1:74006854-74006873 | Msa0224200:three_prime_UTR | 30.0% |
| GTATAATTACTGTTAGAGTC+TGG | + | chr2_1:74006876-74006895 | Msa0224200:three_prime_UTR | 30.0% | |
| ! | GCTGCAGTTTTACATTAATA+TGG | + | chr2_1:74006916-74006935 | Msa0224200:three_prime_UTR | 30.0% |
| ! | TAATATTTTCGTTCTCTGCT+TGG | + | chr2_1:74006970-74006989 | Msa0224200:three_prime_UTR | 30.0% |
| ! | AATATTTTCGTTCTCTGCTT+GGG | + | chr2_1:74006971-74006990 | Msa0224200:three_prime_UTR | 30.0% |
| TTCCCCAAAGATAAACAATT+TGG | + | chr2_1:74007228-74007247 | Msa0224200:three_prime_UTR | 30.0% | |
| TCCCCAAAGATAAACAATTT+GGG | + | chr2_1:74007229-74007248 | Msa0224200:three_prime_UTR | 30.0% | |
| TCCCAAATTGTTTATCTTTG+GGG | - | chr2_1:74007233-74007252 | None:intergenic | 30.0% | |
| ATCACAGTAATATCATGTCT+CGG | - | chr2_1:74007279-74007298 | None:intergenic | 30.0% | |
| GAAATGAAGAAAACTGGCAA+AGG | - | chr2_1:74003367-74003386 | None:intergenic | 35.0% | |
| GTGATGACAAGAATGAGAAA+TGG | - | chr2_1:74003458-74003477 | None:intergenic | 35.0% | |
| !! | GAAATGTTTGCTGTTTCTGT+AGG | + | chr2_1:74003812-74003831 | Msa0224200:intron | 35.0% |
| ATCATCCTCCTTCTATCTAT+TGG | + | chr2_1:74003935-74003954 | Msa0224200:intron | 35.0% | |
| ATGAGACACCAATAGATAGA+AGG | - | chr2_1:74003946-74003965 | None:intergenic | 35.0% | |
| GTCACGGATACAAATATTTG+GGG | + | chr2_1:74004021-74004040 | Msa0224200:intron | 35.0% | |
| ACAAATATTTGGGGATTGCT+TGG | + | chr2_1:74004030-74004049 | Msa0224200:intron | 35.0% | |
| GCTACTCATTATAGAACACA+AGG | - | chr2_1:74004116-74004135 | None:intergenic | 35.0% | |
| !! | TACTCAATGAAGCATTGACA+AGG | - | chr2_1:74004272-74004291 | None:intergenic | 35.0% |
| AAAGTGGTTCATAAAGCTTC+TGG | - | chr2_1:74004481-74004500 | None:intergenic | 35.0% | |
| ! | TTTACACAAAGGTGTGTGTT+TGG | + | chr2_1:74004498-74004517 | Msa0224200:intron | 35.0% |
| ! | ATACATTTTGCGACACTGTT+TGG | + | chr2_1:74004549-74004568 | Msa0224200:intron | 35.0% |
| ! | TACATTTTGCGACACTGTTT+GGG | + | chr2_1:74004550-74004569 | Msa0224200:intron | 35.0% |
| ! | CGTAGTGTCTAATTTTCTGA+TGG | + | chr2_1:74004786-74004805 | Msa0224200:intron | 35.0% |
| AGTTACTTCCTGTTTCACTA+CGG | + | chr2_1:74004809-74004828 | Msa0224200:intron | 35.0% | |
| AATTGTAACCGTAGTGAAAC+AGG | - | chr2_1:74004820-74004839 | None:intergenic | 35.0% | |
| !! | AATGGTGTTATTGACGTTGA+AGG | + | chr2_1:74004887-74004906 | Msa0224200:CDS | 35.0% |
| !! | TTAGTCTTGTTCAACAGTGT+AGG | + | chr2_1:74004967-74004986 | Msa0224200:intron | 35.0% |
| TTGCAGTTAACCAAAAGCTA+GGG | - | chr2_1:74005058-74005077 | None:intergenic | 35.0% | |
| ATTGCAGTTAACCAAAAGCT+AGG | - | chr2_1:74005059-74005078 | None:intergenic | 35.0% | |
| ATCTATCACAGAAAATGGCA+TGG | - | chr2_1:74005172-74005191 | None:intergenic | 35.0% | |
| CAGTGATCTATCACAGAAAA+TGG | - | chr2_1:74005177-74005196 | None:intergenic | 35.0% | |
| AGTAAACTTGACAATCCCAA+GGG | + | chr2_1:74005241-74005260 | Msa0224200:CDS | 35.0% | |
| !! | AGCACGGAATTTTGGAAATA+AGG | - | chr2_1:74005298-74005317 | None:intergenic | 35.0% |
| ATTGTAGAACGGAAATTGAG+TGG | + | chr2_1:74005451-74005470 | Msa0224200:intron | 35.0% | |
| CACAAAAGGTTATGAAGAAG+AGG | + | chr2_1:74005493-74005512 | Msa0224200:CDS | 35.0% | |
| ATCAATTTCGTCATCATCCT+CGG | - | chr2_1:74005607-74005626 | None:intergenic | 35.0% | |
| GGGATACAGATTCCTTAATT+CGG | + | chr2_1:74006578-74006597 | Msa0224200:intron | 35.0% | |
| CAGAATCCACAATCAGTAAT+CGG | - | chr2_1:74006627-74006646 | None:intergenic | 35.0% | |
| CTTAACTCTCTGCTAAACTA+TGG | + | chr2_1:74006660-74006679 | Msa0224200:intron | 35.0% | |
| AGTGTATCAAATTCTGCGAT+CGG | + | chr2_1:74007168-74007187 | Msa0224200:three_prime_UTR | 35.0% | |
| TCACAGTAATATCATGTCTC+GGG | - | chr2_1:74007278-74007297 | None:intergenic | 35.0% | |
| ATGAAGAAAACTGGCAAAGG+AGG | - | chr2_1:74003364-74003383 | None:intergenic | 40.0% | |
| AGTGAAATTGATGTTACCGG+CGG | - | chr2_1:74003431-74003450 | None:intergenic | 40.0% | |
| AAACACTTTCGCCTAATGTC+AGG | + | chr2_1:74003877-74003896 | Msa0224200:CDS | 40.0% | |
| ! | TGAGGTTCTCAAAGTTTTGC+AGG | + | chr2_1:74003908-74003927 | Msa0224200:CDS | 40.0% |
| AGACACCAATAGATAGAAGG+AGG | - | chr2_1:74003943-74003962 | None:intergenic | 40.0% | |
| ! | ACACCTTCGATTAGAAGTGT+CGG | - | chr2_1:74004151-74004170 | None:intergenic | 40.0% |
| ACACACACCTTTGTGTAAAG+TGG | - | chr2_1:74004497-74004516 | None:intergenic | 40.0% | |
| GGACAAACAACTTATAGCAC+AGG | - | chr2_1:74004757-74004776 | None:intergenic | 40.0% | |
| ! | TAGAGGTACGAGATTGTCAA+TGG | + | chr2_1:74004869-74004888 | Msa0224200:intron | 40.0% |
| GAAGGAATTACAAACGAAGC+AGG | + | chr2_1:74004905-74004924 | Msa0224200:CDS | 40.0% | |
| AATTACAAACGAAGCAGGAC+AGG | + | chr2_1:74004910-74004929 | Msa0224200:CDS | 40.0% | |
| ATTACAAACGAAGCAGGACA+GGG | + | chr2_1:74004911-74004930 | Msa0224200:CDS | 40.0% | |
| ATAGATCACTGAACGTGATG+AGG | + | chr2_1:74005186-74005205 | Msa0224200:intron | 40.0% | |
| GAGTAAACTTGACAATCCCA+AGG | + | chr2_1:74005240-74005259 | Msa0224200:CDS | 40.0% | |
| TTTGTGTCAAGCACTTTCCT+GGG | - | chr2_1:74005479-74005498 | None:intergenic | 40.0% | |
| ! | TTTTGTGTCAAGCACTTTCC+TGG | - | chr2_1:74005480-74005499 | None:intergenic | 40.0% |
| !! | AGGAAAGTGCTTGACACAAA+AGG | + | chr2_1:74005479-74005498 | Msa0224200:CDS | 40.0% |
| ATGAAGAAGAGGCCAAAGAA+AGG | + | chr2_1:74005504-74005523 | Msa0224200:CDS | 40.0% | |
| TCAATTTCGTCATCATCCTC+GGG | - | chr2_1:74005606-74005625 | None:intergenic | 40.0% | |
| !! | TTGGTATCCGTTAGTCTTGA+TGG | + | chr2_1:74005837-74005856 | Msa0224200:intron | 40.0% |
| GTTGAGTGCAAAACTGCTTA+TGG | + | chr2_1:74005990-74006009 | Msa0224200:intron | 40.0% | |
| AGCATGAATTGTCTTCCTTC+CGG | - | chr2_1:74006298-74006317 | None:intergenic | 40.0% | |
| TTATTCCTCATGCTGTGTCA+TGG | + | chr2_1:74006390-74006409 | Msa0224200:CDS | 40.0% | |
| AGACAGAGATGAAGATGAAG+AGG | + | chr2_1:74006472-74006491 | Msa0224200:CDS | 40.0% | |
| ! | TGATGATGATGACGATGAAG+AGG | + | chr2_1:74006496-74006515 | Msa0224200:CDS | 40.0% |
| CAGCAGATTATGCCGAATTA+AGG | - | chr2_1:74006593-74006612 | None:intergenic | 40.0% | |
| ! | TCAGATCCGATTACTGATTG+TGG | + | chr2_1:74006618-74006637 | Msa0224200:intron | 40.0% |
| TCTGCTAAACTATGGGTAAC+TGG | + | chr2_1:74006668-74006687 | Msa0224200:intron | 40.0% | |
| TGTTTGTCTTAACTGCAGAG+TGG | + | chr2_1:74006712-74006731 | Msa0224200:intron | 40.0% | |
| TGACTGATCTTTACCAGGTT+TGG | - | chr2_1:74006746-74006765 | None:intergenic | 40.0% | |
| TCAGTTGACTGATCTTTACC+AGG | - | chr2_1:74006751-74006770 | None:intergenic | 40.0% | |
| TTAGTTGTGTGCAACATTCC+TGG | + | chr2_1:74006802-74006821 | Msa0224200:three_prime_UTR | 40.0% | |
| TTAGTTGTGTGCAACATTCC+TGG | + | chr2_1:74006802-74006821 | Msa0224200:three_prime_UTR | 40.0% | |
| !!! | GGTTTTAAAAGGAAGTGACG+AGG | + | chr2_1:74007052-74007071 | Msa0224200:three_prime_UTR | 40.0% |
| AGAAAACTGGCAAAGGAGGA+GGG | - | chr2_1:74003360-74003379 | None:intergenic | 45.0% | |
| AAGAAAACTGGCAAAGGAGG+AGG | - | chr2_1:74003361-74003380 | None:intergenic | 45.0% | |
| GTAGGATAAGCTTCAGCTCT+TGG | + | chr2_1:74003830-74003849 | Msa0224200:intron | 45.0% | |
| ATAAGCTTCAGCTCTTGGCT+GGG | + | chr2_1:74003835-74003854 | Msa0224200:CDS | 45.0% | |
| TCAACACGTTGCCTGACATT+AGG | - | chr2_1:74003891-74003910 | None:intergenic | 45.0% | |
| TAATGTCAGGCAACGTGTTG+AGG | + | chr2_1:74003890-74003909 | Msa0224200:CDS | 45.0% | |
| ! | TTAGCCTGTTTTCGTGTGTG+TGG | + | chr2_1:74003967-74003986 | Msa0224200:intron | 45.0% |
| !! | TAGAAGTGTCGGTGCTACAA+AGG | - | chr2_1:74004140-74004159 | None:intergenic | 45.0% |
| !! | CATGTATCGGTGTCAGACAT+AGG | - | chr2_1:74004176-74004195 | None:intergenic | 45.0% |
| GCAGAGCGAACATGATGAAT+TGG | + | chr2_1:74004412-74004431 | Msa0224200:intron | 45.0% | |
| GCACAGGCACTTATCATGAT+AGG | - | chr2_1:74004741-74004760 | None:intergenic | 45.0% | |
| GAAGAAAGCAAAGCTGCTGA+AGG | + | chr2_1:74004935-74004954 | Msa0224200:CDS | 45.0% | |
| !! | AGAAAGGAGTCCCTAGCTTT+TGG | + | chr2_1:74005045-74005064 | Msa0224200:CDS | 45.0% |
| AACTCCAGCTTGAAACCCTT+GGG | - | chr2_1:74005259-74005278 | None:intergenic | 45.0% | |
| AAACTCCAGCTTGAAACCCT+TGG | - | chr2_1:74005260-74005279 | None:intergenic | 45.0% | |
| CATGCAAGAAACAGAGGCAA+TGG | - | chr2_1:74005695-74005714 | None:intergenic | 45.0% | |
| ! | CATTGCCTCTGTTTCTTGCA+TGG | + | chr2_1:74005693-74005712 | Msa0224200:intron | 45.0% |
| CCTATCCATGCAAGAAACAG+AGG | - | chr2_1:74005701-74005720 | None:intergenic | 45.0% | |
| ! | CCTCTGTTTCTTGCATGGAT+AGG | + | chr2_1:74005698-74005717 | Msa0224200:intron | 45.0% |
| CCGAATGCCATCAAGACTAA+CGG | - | chr2_1:74005847-74005866 | None:intergenic | 45.0% | |
| !! | CCGTTAGTCTTGATGGCATT+CGG | + | chr2_1:74005844-74005863 | Msa0224200:intron | 45.0% |
| GTTCCACTTGATCACAAGCA+TGG | - | chr2_1:74006064-74006083 | None:intergenic | 45.0% | |
| !! | AAAAATGGTGGGGGCATTTG+CGG | + | chr2_1:74006250-74006269 | Msa0224200:intron | 45.0% |
| ! | CTGGTGATGATAGATGTCAC+CGG | + | chr2_1:74006276-74006295 | Msa0224200:intron | 45.0% |
| TGATGATAGATGTCACCGGA+AGG | + | chr2_1:74006280-74006299 | Msa0224200:intron | 45.0% | |
| TCATGCTGTGTCATGGTTCA+CGG | + | chr2_1:74006397-74006416 | Msa0224200:CDS | 45.0% | |
| ! | TGATGACGATGAAGAGGATG+AGG | + | chr2_1:74006502-74006521 | Msa0224200:CDS | 45.0% |
| GGATGAGGATGAAGATGATG+AGG | + | chr2_1:74006517-74006536 | Msa0224200:CDS | 45.0% | |
| TGAGGATGAAGATGATGAGG+AGG | + | chr2_1:74006520-74006539 | Msa0224200:CDS | 45.0% | |
| ATGATGAGGAGGAAGACGAA+GGG | + | chr2_1:74006531-74006550 | Msa0224200:CDS | 45.0% | |
| GGAAGAACAAGAGCAAGGTA+GGG | + | chr2_1:74006558-74006577 | Msa0224200:intron | 45.0% | |
| TTAACTGCAGAGTGGTAGCA+AGG | + | chr2_1:74006720-74006739 | Msa0224200:intron | 45.0% | |
| GTTCTCTGCTTGGGATTCTT+GGG | + | chr2_1:74006980-74006999 | Msa0224200:three_prime_UTR | 45.0% | |
| CGGCTGATGAATCATGCAAT+TGG | + | chr2_1:74007188-74007207 | Msa0224200:three_prime_UTR | 45.0% | |
| GAAATTGATGTTACCGGCGG+CGG | - | chr2_1:74003428-74003447 | None:intergenic | 50.0% | |
| GATAAGCTTCAGCTCTTGGC+TGG | + | chr2_1:74003834-74003853 | Msa0224200:CDS | 50.0% | |
| TAAGCTTCAGCTCTTGGCTG+GGG | + | chr2_1:74003836-74003855 | Msa0224200:CDS | 50.0% | |
| ! | GCACCGACACTTCTAATCGA+AGG | + | chr2_1:74004145-74004164 | Msa0224200:intron | 50.0% |
| TTTAGAGGAGCGAGCTCAGT+TGG | + | chr2_1:74004445-74004464 | Msa0224200:CDS | 50.0% | |
| TTAGACACTACGGGCCTGTT+TGG | - | chr2_1:74004778-74004797 | None:intergenic | 50.0% | |
| GATCACTGAACGTGATGAGG+AGG | + | chr2_1:74005189-74005208 | Msa0224200:intron | 50.0% | |
| CAATCCCAAGGGTTTCAAGC+TGG | + | chr2_1:74005252-74005271 | Msa0224200:CDS | 50.0% | |
| TCATCATCCTCGGGAATCTG+GGG | - | chr2_1:74005597-74005616 | None:intergenic | 50.0% | |
| GTCATCATCCTCGGGAATCT+GGG | - | chr2_1:74005598-74005617 | None:intergenic | 50.0% | |
| GCAAAACTGCTTATGGCGCA+TGG | + | chr2_1:74005997-74006016 | Msa0224200:intron | 50.0% | |
| GTGCCATGCTTGTGATCAAG+TGG | + | chr2_1:74006058-74006077 | Msa0224200:intron | 50.0% | |
| GTGAACCATGACACAGCATG+AGG | - | chr2_1:74006398-74006417 | None:intergenic | 50.0% | |
| CATGCTGTGTCATGGTTCAC+GGG | + | chr2_1:74006398-74006417 | Msa0224200:CDS | 50.0% | |
| GATGATGAGGAGGAAGACGA+AGG | + | chr2_1:74006530-74006549 | Msa0224200:CDS | 50.0% | |
| GAAGGGGAAGAACAAGAGCA+AGG | + | chr2_1:74006553-74006572 | Msa0224200:CDS | 50.0% | |
| GGGAAGAACAAGAGCAAGGT+AGG | + | chr2_1:74006557-74006576 | Msa0224200:intron | 50.0% | |
| ! | ACTGCTGCTTGCAATCAGCA+GGG | - | chr2_1:74006777-74006796 | None:intergenic | 50.0% |
| ! | TACTGCTGCTTGCAATCAGC+AGG | - | chr2_1:74006778-74006797 | None:intergenic | 50.0% |
| CGTTCTCTGCTTGGGATTCT+TGG | + | chr2_1:74006979-74006998 | Msa0224200:three_prime_UTR | 50.0% | |
| CTGGCAAAGGAGGAGGGAAA+TGG | - | chr2_1:74003354-74003373 | None:intergenic | 55.0% | |
| !! | GGGAAGATCGGCGGATTGAT+CGG | - | chr2_1:74003401-74003420 | None:intergenic | 55.0% |
| ! | CTCAGTGCTGAAGATCGTGC+TGG | + | chr2_1:74003598-74003617 | Msa0224200:CDS | 55.0% |
| TGGGGATCGTGTGGATGTCA+TGG | + | chr2_1:74003854-74003873 | Msa0224200:CDS | 55.0% | |
| GCAGCCACACACACGAAAAC+AGG | - | chr2_1:74003974-74003993 | None:intergenic | 55.0% | |
| ACGGAAATTGAGTGGCACCC+AGG | + | chr2_1:74005459-74005478 | Msa0224200:CDS | 55.0% | |
| CGTCATCATCCTCGGGAATC+TGG | - | chr2_1:74005599-74005618 | None:intergenic | 55.0% | |
| TGTGTCATGGTTCACGGGAG+AGG | + | chr2_1:74006403-74006422 | Msa0224200:CDS | 55.0% | |
| TGAGGAGGAAGACGAAGGGA+AGG | + | chr2_1:74006535-74006554 | Msa0224200:CDS | 55.0% | |
| GAGGAGGAAGACGAAGGGAA+GGG | + | chr2_1:74006536-74006555 | Msa0224200:CDS | 55.0% | |
| AGGAGGAAGACGAAGGGAAG+GGG | + | chr2_1:74006537-74006556 | Msa0224200:CDS | 55.0% | |
| AGTGGTAGCAAGGCCAAACC+TGG | + | chr2_1:74006730-74006749 | Msa0224200:CDS | 55.0% | |
| CATCCTCGGGAATCTGGGGA+GGG | - | chr2_1:74005593-74005612 | None:intergenic | 60.0% | |
| TCATCCTCGGGAATCTGGGG+AGG | - | chr2_1:74005594-74005613 | None:intergenic | 60.0% | |
| !! | GTGGGGGCATTTGCGGAATC+TGG | + | chr2_1:74006257-74006276 | Msa0224200:intron | 60.0% |
| GCTCTTGGCTGGGGATCGTG+TGG | + | chr2_1:74003845-74003864 | Msa0224200:CDS | 65.0% | |
| CAACCCTCCCCAGATTCCCG+AGG | + | chr2_1:74005587-74005606 | Msa0224200:CDS | 65.0% | |
| ATGTTACCGGCGGCGGCAGC+GGG | - | chr2_1:74003421-74003440 | None:intergenic | 70.0% | |
| GATGTTACCGGCGGCGGCAG+CGG | - | chr2_1:74003422-74003441 | None:intergenic | 70.0% | |
| GGCGGCAGCGGGAAGATCGG+CGG | - | chr2_1:74003410-74003429 | None:intergenic | 75.0% | |
| GGCGGCGGCAGCGGGAAGAT+CGG | - | chr2_1:74003413-74003432 | None:intergenic | 75.0% | |
| GATCTTCCCGCTGCCGCCGC+CGG | + | chr2_1:74003412-74003431 | Msa0224200:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 74003339 | 74007349 | 74003339 | ID=Msa0224200;Name=Msa0224200 |
| chr2_1 | mRNA | 74003339 | 74007349 | 74003339 | ID=Msa0224200-mRNA-1;Parent=Msa0224200;Name=Msa0224200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=55|1|1|1|1|1|11|551|366 |
| chr2_1 | exon | 74003339 | 74003433 | 74003339 | ID=Msa0224200-mRNA-1:exon:21808;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74003596 | 74003639 | 74003596 | ID=Msa0224200-mRNA-1:exon:21809;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74003834 | 74003929 | 74003834 | ID=Msa0224200-mRNA-1:exon:21810;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74004416 | 74004508 | 74004416 | ID=Msa0224200-mRNA-1:exon:21811;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74004872 | 74004956 | 74004872 | ID=Msa0224200-mRNA-1:exon:21812;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74005045 | 74005106 | 74005045 | ID=Msa0224200-mRNA-1:exon:21813;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74005190 | 74005374 | 74005190 | ID=Msa0224200-mRNA-1:exon:21814;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74005458 | 74005635 | 74005458 | ID=Msa0224200-mRNA-1:exon:21815;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74005720 | 74005763 | 74005720 | ID=Msa0224200-mRNA-1:exon:21816;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74006370 | 74006574 | 74006370 | ID=Msa0224200-mRNA-1:exon:21817;Parent=Msa0224200-mRNA-1 |
| chr2_1 | exon | 74006730 | 74007349 | 74006730 | ID=Msa0224200-mRNA-1:exon:21818;Parent=Msa0224200-mRNA-1 |
| chr2_1 | five_prime_UTR | 74003339 | 74003393 | 74003339 | ID=Msa0224200-mRNA-1:five_prime_utr;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74003394 | 74003433 | 74003394 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74003596 | 74003639 | 74003596 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74003834 | 74003929 | 74003834 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74004416 | 74004508 | 74004416 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74004872 | 74004956 | 74004872 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74005045 | 74005106 | 74005045 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74005190 | 74005374 | 74005190 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74005458 | 74005635 | 74005458 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74005720 | 74005763 | 74005720 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74006370 | 74006574 | 74006370 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | CDS | 74006730 | 74006798 | 74006730 | ID=Msa0224200-mRNA-1:cds;Parent=Msa0224200-mRNA-1 |
| chr2_1 | three_prime_UTR | 74006799 | 74007349 | 74006799 | ID=Msa0224200-mRNA-1:three_prime_utr;Parent=Msa0224200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
