Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381780 | XP_039690448.1 | 98.920 | 463 | 5 | 0 | 1 | 463 | 1 | 463 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381780 | sp|Q54PW5|DPH1_DICDI | 46.117 | 412 | 175 | 6 | 30 | 438 | 102 | 469 | 8.96e-136 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381780 | G7K6J3 | 98.920 | 463 | 5 | 0 | 1 | 463 | 1 | 463 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001790 | Msa1381780 | 0.801435 | 9.018025e-49 | -8.615850e-47 |
| Msa0027770 | Msa1381780 | 0.811049 | 8.502634e-51 | -8.615850e-47 |
| Msa0051630 | Msa1381780 | 0.827884 | 1.222577e-54 | -8.615850e-47 |
| Msa0051740 | Msa1381780 | 0.813746 | 2.189275e-51 | -8.615850e-47 |
| Msa0051750 | Msa1381780 | 0.826573 | 2.519321e-54 | -8.615850e-47 |
| Msa0054480 | Msa1381780 | 0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0075500 | Msa1381780 | 0.831099 | 2.022091e-55 | -8.615850e-47 |
| Msa0076780 | Msa1381780 | 0.811405 | 7.118241e-51 | -8.615850e-47 |
| Msa0090360 | Msa1381780 | 0.802984 | 4.327174e-49 | -8.615850e-47 |
| Msa1351550 | Msa1381780 | 0.813002 | 3.190432e-51 | -8.615850e-47 |
| Msa1357430 | Msa1381780 | 0.804321 | 2.285228e-49 | -8.615850e-47 |
| Msa1381780 | Msa1400580 | 0.802747 | 4.844413e-49 | -8.615850e-47 |
| Msa1381780 | Msa1411750 | 0.806341 | 8.622825e-50 | -8.615850e-47 |
| Msa1381780 | Msa1419870 | 0.824676 | 7.095187e-54 | -8.615850e-47 |
| Msa1381780 | Msa1450720 | 0.806550 | 7.790555e-50 | -8.615850e-47 |
| Msa1381780 | Msa1458810 | 0.830452 | 2.913812e-55 | -8.615850e-47 |
| Msa0605000 | Msa1381780 | 0.804195 | 2.427472e-49 | -8.615850e-47 |
| Msa0654720 | Msa1381780 | 0.816447 | 5.505119e-52 | -8.615850e-47 |
| Msa0685140 | Msa1381780 | 0.823832 | 1.120198e-53 | -8.615850e-47 |
| Msa0698360 | Msa1381780 | 0.809579 | 1.765147e-50 | -8.615850e-47 |
| Msa0702370 | Msa1381780 | 0.804423 | 2.176073e-49 | -8.615850e-47 |
| Msa0709160 | Msa1381780 | 0.819392 | 1.189975e-52 | -8.615850e-47 |
| Msa0711780 | Msa1381780 | 0.825600 | 4.289929e-54 | -8.615850e-47 |
| Msa0750540 | Msa1381780 | 0.804763 | 1.848302e-49 | -8.615850e-47 |
| Msa0763890 | Msa1381780 | 0.803482 | 3.413713e-49 | -8.615850e-47 |
| Msa0786270 | Msa1381780 | 0.806181 | 9.318648e-50 | -8.615850e-47 |
| Msa0794670 | Msa1381780 | 0.809445 | 1.885586e-50 | -8.615850e-47 |
| Msa0796260 | Msa1381780 | 0.815631 | 8.373203e-52 | -8.615850e-47 |
| Msa0830540 | Msa1381780 | 0.810020 | 1.418696e-50 | -8.615850e-47 |
| Msa0127020 | Msa1381780 | 0.808440 | 3.093823e-50 | -8.615850e-47 |
| Msa0137840 | Msa1381780 | 0.801496 | 8.762003e-49 | -8.615850e-47 |
| Msa0168230 | Msa1381780 | 0.814001 | 1.924484e-51 | -8.615850e-47 |
| Msa0169280 | Msa1381780 | 0.810344 | 1.207516e-50 | -8.615850e-47 |
| Msa0184040 | Msa1381780 | 0.805246 | 1.464166e-49 | -8.615850e-47 |
| Msa0206010 | Msa1381780 | 0.808113 | 3.632828e-50 | -8.615850e-47 |
| Msa0212930 | Msa1381780 | 0.854725 | 1.016263e-61 | -8.615850e-47 |
| Msa0220440 | Msa1381780 | 0.812253 | 4.652284e-51 | -8.615850e-47 |
| Msa1245930 | Msa1381780 | 0.812759 | 3.606622e-51 | -8.615850e-47 |
| Msa1259060 | Msa1381780 | 0.808881 | 2.490396e-50 | -8.615850e-47 |
| Msa1332590 | Msa1381780 | 0.807249 | 5.543181e-50 | -8.615850e-47 |
| Msa1333420 | Msa1381780 | 0.824024 | 1.009762e-53 | -8.615850e-47 |
| Msa1333730 | Msa1381780 | 0.808357 | 3.222370e-50 | -8.615850e-47 |
| Msa1335250 | Msa1381780 | 0.805807 | 1.116937e-49 | -8.615850e-47 |
| Msa0388700 | Msa1381780 | 0.821090 | 4.858010e-53 | -8.615850e-47 |
| Msa0422400 | Msa1381780 | 0.821759 | 3.403333e-53 | -8.615850e-47 |
| Msa0422840 | Msa1381780 | 0.815419 | 9.334831e-52 | -8.615850e-47 |
| Msa0422920 | Msa1381780 | 0.814607 | 1.413758e-51 | -8.615850e-47 |
| Msa0467220 | Msa1381780 | 0.808278 | 3.350370e-50 | -8.615850e-47 |
| Msa0481280 | Msa1381780 | 0.811660 | 6.266214e-51 | -8.615850e-47 |
| Msa1023920 | Msa1381780 | 0.800973 | 1.120889e-48 | -8.615850e-47 |
| Msa1080270 | Msa1381780 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa1088290 | Msa1381780 | 0.807489 | 4.929063e-50 | -8.615850e-47 |
| Msa1100720 | Msa1381780 | 0.814618 | 1.405654e-51 | -8.615850e-47 |
| Msa0245940 | Msa1381780 | 0.805133 | 1.546394e-49 | -8.615850e-47 |
| Msa0253200 | Msa1381780 | 0.857574 | 1.487418e-62 | -8.615850e-47 |
| Msa0292030 | Msa1381780 | 0.857482 | 1.583613e-62 | -8.615850e-47 |
| Msa0299580 | Msa1381780 | 0.802694 | 4.966856e-49 | -8.615850e-47 |
| Msa0310600 | Msa1381780 | 0.816105 | 6.562836e-52 | -8.615850e-47 |
| Msa0310660 | Msa1381780 | 0.821270 | 4.413417e-53 | -8.615850e-47 |
| Msa0326110 | Msa1381780 | 0.805141 | 1.540773e-49 | -8.615850e-47 |
| Msa0330310 | Msa1381780 | 0.854065 | 1.576870e-61 | -8.615850e-47 |
| Msa0337060 | Msa1381780 | 0.802043 | 6.763903e-49 | -8.615850e-47 |
| Msa1107900 | Msa1381780 | 0.800982 | 1.116249e-48 | -8.615850e-47 |
| Msa1118110 | Msa1381780 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa1144040 | Msa1381780 | 0.821341 | 4.251143e-53 | -8.615850e-47 |
| Msa1160590 | Msa1381780 | 0.805666 | 1.195927e-49 | -8.615850e-47 |
| Msa1163870 | Msa1381780 | 0.802037 | 6.783295e-49 | -8.615850e-47 |
| Msa1208880 | Msa1381780 | 0.805257 | 1.456615e-49 | -8.615850e-47 |
| Msa1209760 | Msa1381780 | 0.828767 | 7.487802e-55 | -8.615850e-47 |
| Msa1217580 | Msa1381780 | 0.816817 | 4.547370e-52 | -8.615850e-47 |
| Msa0519740 | Msa1381780 | 0.800794 | 1.219091e-48 | -8.615850e-47 |
| Msa0542090 | Msa1381780 | 0.823704 | 1.200338e-53 | -8.615850e-47 |
| Msa0542130 | Msa1381780 | 0.825074 | 5.715020e-54 | -8.615850e-47 |
| Msa0561230 | Msa1381780 | 0.824602 | 7.383288e-54 | -8.615850e-47 |
| Msa0575470 | Msa1381780 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0880040 | Msa1381780 | 0.809029 | 2.315967e-50 | -8.615850e-47 |
| Msa0932570 | Msa1381780 | 0.815199 | 1.044971e-51 | -8.615850e-47 |
| Msa0937150 | Msa1381780 | 0.800664 | 1.295859e-48 | -8.615850e-47 |
| Msa0945440 | Msa1381780 | 0.813165 | 2.939094e-51 | -8.615850e-47 |
| Msa0970530 | Msa1381780 | 0.846183 | 2.549612e-59 | -8.615850e-47 |
| Msa0970600 | Msa1381780 | 0.835711 | 1.430935e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381780 | MtrunA17_Chr5g0395801 | 98.920 | 463 | 5 | 0 | 1 | 463 | 1 | 463 | 0.0 | 952 |
| Msa1381780 | MtrunA17_Chr1g0147211 | 23.797 | 374 | 223 | 10 | 64 | 383 | 16 | 381 | 8.75e-19 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381780 | AT5G62030.1 | 70.982 | 448 | 115 | 6 | 10 | 450 | 6 | 445 | 0.0 | 640 |
| Msa1381780 | AT3G59630.1 | 24.057 | 424 | 255 | 12 | 55 | 432 | 9 | 411 | 6.48e-24 | 104 |
| Msa1381780 | AT3G59630.2 | 24.057 | 424 | 255 | 12 | 55 | 432 | 9 | 411 | 6.48e-24 | 104 |
Find 123 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAAGGATTTAGGGTTTA+TGG | 0.120386 | tig0020453:-66531 | Msa1381780:CDS |
| GGGACTATTCAGTTTGCTTC+TGG | 0.141078 | tig0020453:-66488 | Msa1381780:CDS |
| AAGTTGAATTCTAAGGATTT+AGG | 0.180160 | tig0020453:-66539 | Msa1381780:CDS |
| ACAAGGGAATCCTAAGATTT+TGG | 0.190611 | tig0020453:-66117 | Msa1381780:CDS |
| GCTGAGATTCTTATTCATTA+TGG | 0.202025 | tig0020453:-66659 | Msa1381780:CDS |
| GGAGAGATTGGAAATGAAAA+TGG | 0.217434 | tig0020453:-66096 | Msa1381780:CDS |
| TTCAGTTTGCTTCTGGGATT+AGG | 0.232646 | tig0020453:-66481 | Msa1381780:CDS |
| TACCCTAATTTCTCCAATTC+AGG | 0.242150 | tig0020453:+66449 | None:intergenic |
| AAGCCTGAATTGGAGAAATT+AGG | 0.248444 | tig0020453:-66452 | Msa1381780:CDS |
| ATTTAGGGTTTATGGGTAAA+AGG | 0.253235 | tig0020453:-66523 | Msa1381780:CDS |
| TCCAATCTCTCCAAAATCTT+AGG | 0.253400 | tig0020453:+66107 | None:intergenic |
| GAAATTAGGGTATAGGGTTT+TGG | 0.278652 | tig0020453:-66438 | Msa1381780:CDS |
| GCCAAGGCGACTGAAGATTT+TGG | 0.283970 | tig0020453:-65786 | Msa1381780:CDS |
| TCAGTTTGCTTCTGGGATTA+GGG | 0.286217 | tig0020453:-66480 | Msa1381780:CDS |
| TCCTAGACTCTCTATTGATT+GGG | 0.286257 | tig0020453:-65970 | Msa1381780:CDS |
| TCAAACAAAGAGATTCTATA+AGG | 0.295399 | tig0020453:+66026 | None:intergenic |
| AGTTGAATTCTAAGGATTTA+GGG | 0.301959 | tig0020453:-66538 | Msa1381780:CDS |
| TACTGTTAAGTTGAATTCTA+AGG | 0.302039 | tig0020453:-66546 | Msa1381780:CDS |
| GATAGCGAATCCGGGGATTA+AGG | 0.306937 | tig0020453:-66279 | Msa1381780:CDS |
| GGACTATTCAGTTTGCTTCT+GGG | 0.318873 | tig0020453:-66487 | Msa1381780:CDS |
| GAGTACATGAGAAGGCCTTC+AGG | 0.322311 | tig0020453:+66797 | None:intergenic |
| TCTAAGGATTTAGGGTTTAT+GGG | 0.324406 | tig0020453:-66530 | Msa1381780:CDS |
| ATTGGAGAAATTAGGGTATA+GGG | 0.325559 | tig0020453:-66444 | Msa1381780:CDS |
| AATTGGAGAAATTAGGGTAT+AGG | 0.337620 | tig0020453:-66445 | Msa1381780:CDS |
| GTCCTAGACTCTCTATTGAT+TGG | 0.343341 | tig0020453:-65971 | Msa1381780:CDS |
| GGTAAAAGGGTTATTCTTGC+TGG | 0.344947 | tig0020453:-66509 | Msa1381780:CDS |
| TGAGGATTGAATCTGGGATT+TGG | 0.359458 | tig0020453:+66936 | None:intergenic |
| GATTTCTCTGCTATTGCTCT+TGG | 0.366141 | tig0020453:-66683 | Msa1381780:CDS |
| AGCGAAGGAGGCAAGGAATT+GGG | 0.371820 | tig0020453:-66165 | Msa1381780:CDS |
| CAAGGTTGTGAAGATGTTAC+AGG | 0.372583 | tig0020453:-65852 | Msa1381780:CDS |
| TCCAACTCTTTCCCCACCTT+CGG | 0.380494 | tig0020453:+66365 | None:intergenic |
| TCGAAGTTCACAAATGCGTT+TGG | 0.385078 | tig0020453:-66862 | Msa1381780:CDS |
| GAGAGATTGGAAATGAAAAT+GGG | 0.385615 | tig0020453:-66095 | Msa1381780:CDS |
| AGCCTGAATTGGAGAAATTA+GGG | 0.386228 | tig0020453:-66451 | Msa1381780:CDS |
| AGCGTTTATGATAGCGAATC+CGG | 0.400296 | tig0020453:-66288 | Msa1381780:CDS |
| CAAACAAAGAGATTCTATAA+GGG | 0.414212 | tig0020453:+66027 | None:intergenic |
| AAGCGAAGGAGGCAAGGAAT+TGG | 0.416971 | tig0020453:-66166 | Msa1381780:CDS |
| GGGTCGTTGAGGATTGAATC+TGG | 0.417738 | tig0020453:+66929 | None:intergenic |
| GTAACTCACTGTTACGTTCT+CGG | 0.423153 | tig0020453:-66737 | Msa1381780:CDS |
| TAGGGCTGTGAAGCCTGAAT+TGG | 0.423463 | tig0020453:-66462 | Msa1381780:CDS |
| ACTTCGAAGGAGTAGTTTGA+TGG | 0.426404 | tig0020453:+66878 | None:intergenic |
| GGGGAAAGAGTTGGATGATA+AGG | 0.427023 | tig0020453:-66357 | Msa1381780:CDS |
| CAGTCGAAGCCGTTGTCTGC+TGG | 0.443942 | tig0020453:-66410 | Msa1381780:CDS |
| CTCTTTGTTTGAAGATTCTG+TGG | 0.444587 | tig0020453:-66015 | Msa1381780:CDS |
| AGCGATGCGTTTAGCGGCGG+TGG | 0.450582 | tig0020453:+66829 | None:intergenic |
| GCCTCAAAAGGAGTCAGAAC+TGG | 0.454686 | tig0020453:+65930 | None:intergenic |
| TTGAAGATTCTGTGGATGCT+TGG | 0.461951 | tig0020453:-66007 | Msa1381780:CDS |
| TTTAGGGTTTATGGGTAAAA+GGG | 0.464356 | tig0020453:-66522 | Msa1381780:CDS |
| GTTGCTCTAACGGTAGCTGC+GGG | 0.466214 | tig0020453:-65812 | Msa1381780:CDS |
| AGAAACAGTGATGGTGTTGT+TGG | 0.468978 | tig0020453:+66997 | None:intergenic |
| TATGATCATGTGGGTATGAA+GGG | 0.470330 | tig0020453:-66212 | Msa1381780:CDS |
| ACCAAAATCTTCAGTCGCCT+TGG | 0.476477 | tig0020453:+65785 | None:intergenic |
| ATATGATCATGTGGGTATGA+AGG | 0.476747 | tig0020453:-66213 | Msa1381780:CDS |
| TGATAAGGAAGAGAGTGTTT+TGG | 0.478103 | tig0020453:-66342 | Msa1381780:CDS |
| AGGTTGTTCTGGAAATTCCA+TGG | 0.486487 | tig0020453:+67027 | None:intergenic |
| TGGTGTTTGTGTCGGATGGA+AGG | 0.488027 | tig0020453:-66322 | Msa1381780:CDS |
| TGCGTTTAGCGGCGGTGGAA+CGG | 0.489236 | tig0020453:+66834 | None:intergenic |
| GCGTTTATGATAGCGAATCC+GGG | 0.502842 | tig0020453:-66287 | Msa1381780:CDS |
| AGTGCTATCTCAGCCTCAAA+AGG | 0.509062 | tig0020453:+65918 | None:intergenic |
| CGGTAGCTGCGGGGATGCCA+AGG | 0.510110 | tig0020453:-65802 | Msa1381780:CDS |
| AAAACAACTTCCCCACATAA+GGG | 0.512334 | tig0020453:+66243 | None:intergenic |
| GTAAAAGGGTTATTCTTGCT+GGG | 0.516662 | tig0020453:-66508 | Msa1381780:CDS |
| TAGGAAAATTTCAGTAACTT+CGG | 0.516766 | tig0020453:-65682 | Msa1381780:CDS |
| GAAACAGTGATGGTGTTGTT+GGG | 0.521747 | tig0020453:+66998 | None:intergenic |
| GATATCTTCACCACCTTCGC+CGG | 0.525270 | tig0020453:-66761 | Msa1381780:CDS |
| AGTACATGAGAAGGCCTTCA+GGG | 0.526196 | tig0020453:+66798 | None:intergenic |
| AGGGTGTACTGCACCGAAGG+TGG | 0.530199 | tig0020453:-66378 | Msa1381780:CDS |
| GACTATTATGCTCAAGATGG+AGG | 0.530446 | tig0020453:-65747 | Msa1381780:CDS |
| CGAAGGAGTAGTTTGATGGA+AGG | 0.531570 | tig0020453:+66882 | None:intergenic |
| TTTAGGTATGACCCTTATGT+GGG | 0.532658 | tig0020453:-66254 | Msa1381780:CDS |
| TGATGGAAGGATTGAGATTG+CGG | 0.540466 | tig0020453:+66895 | None:intergenic |
| TACCTAAAAGCCTTAATCCC+CGG | 0.540870 | tig0020453:+66269 | None:intergenic |
| AGATTGCGGCGTTGAGAAGT+GGG | 0.549039 | tig0020453:+66909 | None:intergenic |
| GAGATTGCGGCGTTGAGAAG+TGG | 0.551098 | tig0020453:+66908 | None:intergenic |
| AAGAGCGATTGTTGCTCTAA+CGG | 0.551801 | tig0020453:-65822 | Msa1381780:CDS |
| GTTCTCGGTGATGTTACCTA+TGG | 0.552000 | tig0020453:-66722 | Msa1381780:CDS |
| GGGTGTACTGCACCGAAGGT+GGG | 0.552210 | tig0020453:-66377 | Msa1381780:CDS |
| GGTCGTTGAGGATTGAATCT+GGG | 0.555765 | tig0020453:+66930 | None:intergenic |
| AACGCATTTGTGAACTTCGA+AGG | 0.558188 | tig0020453:+66865 | None:intergenic |
| GGTGTACTGCACCGAAGGTG+GGG | 0.558556 | tig0020453:-66376 | Msa1381780:CDS |
| TTGGAGGAATATGATCATGT+GGG | 0.563003 | tig0020453:-66221 | Msa1381780:CDS |
| CGTTGAGAAGTGGGTCGTTG+AGG | 0.563741 | tig0020453:+66918 | None:intergenic |
| GGATAAGAGAGTACATGAGA+AGG | 0.565832 | tig0020453:+66789 | None:intergenic |
| CCTAGACTCTCTATTGATTG+GGG | 0.565888 | tig0020453:-65969 | Msa1381780:CDS |
| ACTATTATGCTCAAGATGGA+GGG | 0.566137 | tig0020453:-65746 | Msa1381780:CDS |
| TTGAAGAGCGATGCGTTTAG+CGG | 0.568818 | tig0020453:+66823 | None:intergenic |
| ATGCTCAAGATGGAGGGGAG+TGG | 0.569680 | tig0020453:-65740 | Msa1381780:CDS |
| TCTTGAGCATAATAGTCCAT+TGG | 0.570183 | tig0020453:+65753 | None:intergenic |
| GCAGACAACGGCTTCGACTG+CGG | 0.570442 | tig0020453:+66413 | None:intergenic |
| ATGGACTATTATGCTCAAGA+TGG | 0.571439 | tig0020453:-65750 | Msa1381780:CDS |
| TTTAGGGTGTACTGCACCGA+AGG | 0.572206 | tig0020453:-66381 | Msa1381780:CDS |
| ATCGCTCTTCAATTCCCTGA+AGG | 0.572586 | tig0020453:-66812 | Msa1381780:CDS |
| TTCTTTGATAGAAACAGTGA+TGG | 0.575244 | tig0020453:+66988 | None:intergenic |
| TTTGAGGCTGAGATAGCACT+GGG | 0.575711 | tig0020453:-65915 | Msa1381780:CDS |
| CTATTATGCTCAAGATGGAG+GGG | 0.577204 | tig0020453:-65745 | Msa1381780:CDS |
| ATCAATACAACAAGCACCAT+AGG | 0.579949 | tig0020453:+66706 | None:intergenic |
| GCGAAGGAGGCAAGGAATTG+GGG | 0.585334 | tig0020453:-66164 | Msa1381780:CDS |
| AAAAGCCTAGTCGTCCTGCT+AGG | 0.588814 | tig0020453:-65701 | Msa1381780:CDS |
| TGGGATTGATACCTGGATGG+TGG | 0.589217 | tig0020453:-65896 | Msa1381780:CDS |
| TAAAGGATTTGATTATACTG+TGG | 0.592986 | tig0020453:-66069 | Msa1381780:CDS |
| GGGATTGATACCTGGATGGT+GGG | 0.594275 | tig0020453:-65895 | Msa1381780:CDS |
| AGAGATTGGAAATGAAAATG+GGG | 0.600592 | tig0020453:-66094 | Msa1381780:CDS |
| ATAGCACTGGGATTGATACC+TGG | 0.600649 | tig0020453:-65903 | Msa1381780:CDS |
| ACCGAAGGTGGGGAAAGAGT+TGG | 0.600972 | tig0020453:-66366 | Msa1381780:CDS |
| TGTTGCTCTAACGGTAGCTG+CGG | 0.603328 | tig0020453:-65813 | Msa1381780:CDS |
| CCCCAATCAATAGAGAGTCT+AGG | 0.603832 | tig0020453:+65969 | None:intergenic |
| ATGTGGGTATGAAGGGGTCG+AGG | 0.608316 | tig0020453:-66205 | Msa1381780:CDS |
| TTTGGAGGAATATGATCATG+TGG | 0.610687 | tig0020453:-66222 | Msa1381780:CDS |
| GTGAGTTACACCGGCGAAGG+TGG | 0.617454 | tig0020453:+66751 | None:intergenic |
| AAAACTCAGATGCAGAAACA+AGG | 0.622881 | tig0020453:-65870 | Msa1381780:CDS |
| TTAGGGACTTTGGGTAGACA+AGG | 0.624346 | tig0020453:-66134 | Msa1381780:CDS |
| GAGATTGGAAATGAAAATGG+GGG | 0.625888 | tig0020453:-66093 | Msa1381780:CDS |
| ACAGTGAGTTACACCGGCGA+AGG | 0.629851 | tig0020453:+66748 | None:intergenic |
| AACGTAACAGTGAGTTACAC+CGG | 0.640720 | tig0020453:+66742 | None:intergenic |
| TAGGGACTTTGGGTAGACAA+GGG | 0.641045 | tig0020453:-66133 | Msa1381780:CDS |
| CGTTTATGATAGCGAATCCG+GGG | 0.643038 | tig0020453:-66286 | Msa1381780:CDS |
| AAGAGCGATGCGTTTAGCGG+CGG | 0.644502 | tig0020453:+66826 | None:intergenic |
| CACTGGGATTGATACCTGGA+TGG | 0.644522 | tig0020453:-65899 | Msa1381780:CDS |
| ATGATCATGTGGGTATGAAG+GGG | 0.649107 | tig0020453:-66211 | Msa1381780:CDS |
| AAAATCTCACCAGCAGACAA+CGG | 0.661511 | tig0020453:+66401 | None:intergenic |
| TTAGGTATGACCCTTATGTG+GGG | 0.683162 | tig0020453:-66253 | Msa1381780:CDS |
| TTGCTCTAACGGTAGCTGCG+GGG | 0.685362 | tig0020453:-65811 | Msa1381780:CDS |
| AGGTGGTGAAGATATCAGAG+AGG | 0.733119 | tig0020453:+66768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCAACAAAAACATAAAGACA+AGG | + | tig0020453:66085-66104 | None:intergenic | 25.0% |
| !!! | TACTGTTAAGTTGAATTCTA+AGG | - | tig0020453:66135-66154 | Msa1381780:CDS | 25.0% |
| !! | AAGTTGAATTCTAAGGATTT+AGG | - | tig0020453:66142-66161 | Msa1381780:CDS | 25.0% |
| !! | AGTTGAATTCTAAGGATTTA+GGG | - | tig0020453:66143-66162 | Msa1381780:CDS | 25.0% |
| ! | TAAAGGATTTGATTATACTG+TGG | - | tig0020453:66612-66631 | Msa1381780:CDS | 25.0% |
| ! | CAAACAAAGAGATTCTATAA+GGG | + | tig0020453:66657-66676 | None:intergenic | 25.0% |
| ! | TCAAACAAAGAGATTCTATA+AGG | + | tig0020453:66658-66677 | None:intergenic | 25.0% |
| ! | TAGGAAAATTTCAGTAACTT+CGG | - | tig0020453:66999-67018 | Msa1381780:CDS | 25.0% |
| ! | TCAACAAAAACATAAAGACA+AGG | + | tig0020453:66085-66104 | None:intergenic | 25.0% |
| !!! | TACTGTTAAGTTGAATTCTA+AGG | - | tig0020453:66135-66154 | Msa1381780:CDS | 25.0% |
| !! | AAGTTGAATTCTAAGGATTT+AGG | - | tig0020453:66142-66161 | Msa1381780:CDS | 25.0% |
| !! | AGTTGAATTCTAAGGATTTA+GGG | - | tig0020453:66143-66162 | Msa1381780:CDS | 25.0% |
| ! | TAAAGGATTTGATTATACTG+TGG | - | tig0020453:66612-66631 | Msa1381780:CDS | 25.0% |
| ! | CAAACAAAGAGATTCTATAA+GGG | + | tig0020453:66657-66676 | None:intergenic | 25.0% |
| ! | TCAAACAAAGAGATTCTATA+AGG | + | tig0020453:66658-66677 | None:intergenic | 25.0% |
| ! | TAGGAAAATTTCAGTAACTT+CGG | - | tig0020453:66999-67018 | Msa1381780:CDS | 25.0% |
| TTCTTTGATAGAAACAGTGA+TGG | + | tig0020453:65696-65715 | None:intergenic | 30.0% | |
| !!! | TTGATGAATCGTTTTGGTTT+TGG | + | tig0020453:65722-65741 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATGAATCGTTT+TGG | + | tig0020453:65728-65747 | None:intergenic | 30.0% |
| GCTGAGATTCTTATTCATTA+TGG | - | tig0020453:66022-66041 | Msa1381780:CDS | 30.0% | |
| ! | GGAATTTTTGTCGAATCAAT+AGG | + | tig0020453:66064-66083 | None:intergenic | 30.0% |
| ! | TTCTAAGGATTTAGGGTTTA+TGG | - | tig0020453:66150-66169 | Msa1381780:CDS | 30.0% |
| ! | TCTAAGGATTTAGGGTTTAT+GGG | - | tig0020453:66151-66170 | Msa1381780:CDS | 30.0% |
| ! | ATTTAGGGTTTATGGGTAAA+AGG | - | tig0020453:66158-66177 | Msa1381780:CDS | 30.0% |
| ! | TTTAGGGTTTATGGGTAAAA+GGG | - | tig0020453:66159-66178 | Msa1381780:CDS | 30.0% |
| AATTGGAGAAATTAGGGTAT+AGG | - | tig0020453:66236-66255 | Msa1381780:CDS | 30.0% | |
| ATTGGAGAAATTAGGGTATA+GGG | - | tig0020453:66237-66256 | Msa1381780:CDS | 30.0% | |
| !! | AAATGCAATTTTGAAAGCGA+AGG | - | tig0020453:66501-66520 | Msa1381780:CDS | 30.0% |
| GAGAGATTGGAAATGAAAAT+GGG | - | tig0020453:66586-66605 | Msa1381780:CDS | 30.0% | |
| AGAGATTGGAAATGAAAATG+GGG | - | tig0020453:66587-66606 | Msa1381780:CDS | 30.0% | |
| !!! | ACTAGGCTTTTTCATATAAG+AGG | + | tig0020453:66971-66990 | None:intergenic | 30.0% |
| TTCTTTGATAGAAACAGTGA+TGG | + | tig0020453:65696-65715 | None:intergenic | 30.0% | |
| !!! | TTGATGAATCGTTTTGGTTT+TGG | + | tig0020453:65722-65741 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATGAATCGTTT+TGG | + | tig0020453:65728-65747 | None:intergenic | 30.0% |
| GCTGAGATTCTTATTCATTA+TGG | - | tig0020453:66022-66041 | Msa1381780:CDS | 30.0% | |
| ! | GGAATTTTTGTCGAATCAAT+AGG | + | tig0020453:66064-66083 | None:intergenic | 30.0% |
| ! | TTCTAAGGATTTAGGGTTTA+TGG | - | tig0020453:66150-66169 | Msa1381780:CDS | 30.0% |
| ! | TCTAAGGATTTAGGGTTTAT+GGG | - | tig0020453:66151-66170 | Msa1381780:CDS | 30.0% |
| ! | ATTTAGGGTTTATGGGTAAA+AGG | - | tig0020453:66158-66177 | Msa1381780:CDS | 30.0% |
| ! | TTTAGGGTTTATGGGTAAAA+GGG | - | tig0020453:66159-66178 | Msa1381780:CDS | 30.0% |
| AATTGGAGAAATTAGGGTAT+AGG | - | tig0020453:66236-66255 | Msa1381780:CDS | 30.0% | |
| ATTGGAGAAATTAGGGTATA+GGG | - | tig0020453:66237-66256 | Msa1381780:CDS | 30.0% | |
| !! | AAATGCAATTTTGAAAGCGA+AGG | - | tig0020453:66501-66520 | Msa1381780:CDS | 30.0% |
| GAGAGATTGGAAATGAAAAT+GGG | - | tig0020453:66586-66605 | Msa1381780:CDS | 30.0% | |
| AGAGATTGGAAATGAAAATG+GGG | - | tig0020453:66587-66606 | Msa1381780:CDS | 30.0% | |
| !!! | ACTAGGCTTTTTCATATAAG+AGG | + | tig0020453:66971-66990 | None:intergenic | 30.0% |
| ATCAATACAACAAGCACCAT+AGG | + | tig0020453:65978-65997 | None:intergenic | 35.0% | |
| GTAAAAGGGTTATTCTTGCT+GGG | - | tig0020453:66173-66192 | Msa1381780:CDS | 35.0% | |
| AAGCCTGAATTGGAGAAATT+AGG | - | tig0020453:66229-66248 | Msa1381780:CDS | 35.0% | |
| AGCCTGAATTGGAGAAATTA+GGG | - | tig0020453:66230-66249 | Msa1381780:CDS | 35.0% | |
| TACCCTAATTTCTCCAATTC+AGG | + | tig0020453:66235-66254 | None:intergenic | 35.0% | |
| ! | GAAATTAGGGTATAGGGTTT+TGG | - | tig0020453:66243-66262 | Msa1381780:CDS | 35.0% |
| !!! | TGATAAGGAAGAGAGTGTTT+TGG | - | tig0020453:66339-66358 | Msa1381780:CDS | 35.0% |
| !! | TTTTAGGTATGACCCTTATG+TGG | - | tig0020453:66426-66445 | Msa1381780:CDS | 35.0% |
| TTTAGGTATGACCCTTATGT+GGG | - | tig0020453:66427-66446 | Msa1381780:CDS | 35.0% | |
| AAAACAACTTCCCCACATAA+GGG | + | tig0020453:66441-66460 | None:intergenic | 35.0% | |
| AAAAACAACTTCCCCACATA+AGG | + | tig0020453:66442-66461 | None:intergenic | 35.0% | |
| !! | TTATGTGGGGAAGTTGTTTT+TGG | - | tig0020453:66441-66460 | Msa1381780:CDS | 35.0% |
| TTTGGAGGAATATGATCATG+TGG | - | tig0020453:66459-66478 | Msa1381780:CDS | 35.0% | |
| TTGGAGGAATATGATCATGT+GGG | - | tig0020453:66460-66479 | Msa1381780:CDS | 35.0% | |
| ATATGATCATGTGGGTATGA+AGG | - | tig0020453:66468-66487 | Msa1381780:CDS | 35.0% | |
| TATGATCATGTGGGTATGAA+GGG | - | tig0020453:66469-66488 | Msa1381780:CDS | 35.0% | |
| ! | ACAAGGGAATCCTAAGATTT+TGG | - | tig0020453:66564-66583 | Msa1381780:CDS | 35.0% |
| !! | TCCTAAGATTTTGGAGAGAT+TGG | - | tig0020453:66573-66592 | Msa1381780:CDS | 35.0% |
| TCCAATCTCTCCAAAATCTT+AGG | + | tig0020453:66577-66596 | None:intergenic | 35.0% | |
| GGAGAGATTGGAAATGAAAA+TGG | - | tig0020453:66585-66604 | Msa1381780:CDS | 35.0% | |
| GAGATTGGAAATGAAAATGG+GGG | - | tig0020453:66588-66607 | Msa1381780:CDS | 35.0% | |
| GAAATGAAAATGGGGGATAA+AGG | - | tig0020453:66595-66614 | Msa1381780:CDS | 35.0% | |
| ! | CTCTTTGTTTGAAGATTCTG+TGG | - | tig0020453:66666-66685 | Msa1381780:CDS | 35.0% |
| ! | TCCTAGACTCTCTATTGATT+GGG | - | tig0020453:66711-66730 | Msa1381780:CDS | 35.0% |
| AAAACTCAGATGCAGAAACA+AGG | - | tig0020453:66811-66830 | Msa1381780:CDS | 35.0% | |
| ! | TTTTGGTGGAGATTATCCAA+TGG | - | tig0020453:66912-66931 | Msa1381780:CDS | 35.0% |
| TCTTGAGCATAATAGTCCAT+TGG | + | tig0020453:66931-66950 | None:intergenic | 35.0% | |
| ! | ATGGACTATTATGCTCAAGA+TGG | - | tig0020453:66931-66950 | Msa1381780:CDS | 35.0% |
| ACTATTATGCTCAAGATGGA+GGG | - | tig0020453:66935-66954 | Msa1381780:CDS | 35.0% | |
| ! | GTTACTGAAATTTTCCTAGC+AGG | + | tig0020453:66997-67016 | None:intergenic | 35.0% |
| ATCAATACAACAAGCACCAT+AGG | + | tig0020453:65978-65997 | None:intergenic | 35.0% | |
| GTAAAAGGGTTATTCTTGCT+GGG | - | tig0020453:66173-66192 | Msa1381780:CDS | 35.0% | |
| AAGCCTGAATTGGAGAAATT+AGG | - | tig0020453:66229-66248 | Msa1381780:CDS | 35.0% | |
| AGCCTGAATTGGAGAAATTA+GGG | - | tig0020453:66230-66249 | Msa1381780:CDS | 35.0% | |
| TACCCTAATTTCTCCAATTC+AGG | + | tig0020453:66235-66254 | None:intergenic | 35.0% | |
| ! | GAAATTAGGGTATAGGGTTT+TGG | - | tig0020453:66243-66262 | Msa1381780:CDS | 35.0% |
| !!! | TGATAAGGAAGAGAGTGTTT+TGG | - | tig0020453:66339-66358 | Msa1381780:CDS | 35.0% |
| !! | TTTTAGGTATGACCCTTATG+TGG | - | tig0020453:66426-66445 | Msa1381780:CDS | 35.0% |
| TTTAGGTATGACCCTTATGT+GGG | - | tig0020453:66427-66446 | Msa1381780:CDS | 35.0% | |
| AAAACAACTTCCCCACATAA+GGG | + | tig0020453:66441-66460 | None:intergenic | 35.0% | |
| AAAAACAACTTCCCCACATA+AGG | + | tig0020453:66442-66461 | None:intergenic | 35.0% | |
| !! | TTATGTGGGGAAGTTGTTTT+TGG | - | tig0020453:66441-66460 | Msa1381780:CDS | 35.0% |
| TTTGGAGGAATATGATCATG+TGG | - | tig0020453:66459-66478 | Msa1381780:CDS | 35.0% | |
| TTGGAGGAATATGATCATGT+GGG | - | tig0020453:66460-66479 | Msa1381780:CDS | 35.0% | |
| ATATGATCATGTGGGTATGA+AGG | - | tig0020453:66468-66487 | Msa1381780:CDS | 35.0% | |
| TATGATCATGTGGGTATGAA+GGG | - | tig0020453:66469-66488 | Msa1381780:CDS | 35.0% | |
| ! | ACAAGGGAATCCTAAGATTT+TGG | - | tig0020453:66564-66583 | Msa1381780:CDS | 35.0% |
| !! | TCCTAAGATTTTGGAGAGAT+TGG | - | tig0020453:66573-66592 | Msa1381780:CDS | 35.0% |
| TCCAATCTCTCCAAAATCTT+AGG | + | tig0020453:66577-66596 | None:intergenic | 35.0% | |
| GGAGAGATTGGAAATGAAAA+TGG | - | tig0020453:66585-66604 | Msa1381780:CDS | 35.0% | |
| GAGATTGGAAATGAAAATGG+GGG | - | tig0020453:66588-66607 | Msa1381780:CDS | 35.0% | |
| GAAATGAAAATGGGGGATAA+AGG | - | tig0020453:66595-66614 | Msa1381780:CDS | 35.0% | |
| ! | CTCTTTGTTTGAAGATTCTG+TGG | - | tig0020453:66666-66685 | Msa1381780:CDS | 35.0% |
| ! | TCCTAGACTCTCTATTGATT+GGG | - | tig0020453:66711-66730 | Msa1381780:CDS | 35.0% |
| AAAACTCAGATGCAGAAACA+AGG | - | tig0020453:66811-66830 | Msa1381780:CDS | 35.0% | |
| ! | TTTTGGTGGAGATTATCCAA+TGG | - | tig0020453:66912-66931 | Msa1381780:CDS | 35.0% |
| TCTTGAGCATAATAGTCCAT+TGG | + | tig0020453:66931-66950 | None:intergenic | 35.0% | |
| ! | ATGGACTATTATGCTCAAGA+TGG | - | tig0020453:66931-66950 | Msa1381780:CDS | 35.0% |
| ACTATTATGCTCAAGATGGA+GGG | - | tig0020453:66935-66954 | Msa1381780:CDS | 35.0% | |
| ! | GTTACTGAAATTTTCCTAGC+AGG | + | tig0020453:66997-67016 | None:intergenic | 35.0% |
| !!! | TTGGGTTTTTCAGGTTGTTC+TGG | + | tig0020453:65668-65687 | None:intergenic | 40.0% |
| !!! | ATGGTGTTGTTGGGTTTTTC+AGG | + | tig0020453:65677-65696 | None:intergenic | 40.0% |
| !! | GAAACAGTGATGGTGTTGTT+GGG | + | tig0020453:65686-65705 | None:intergenic | 40.0% |
| !! | AGAAACAGTGATGGTGTTGT+TGG | + | tig0020453:65687-65706 | None:intergenic | 40.0% |
| ! | TGAGGATTGAATCTGGGATT+TGG | + | tig0020453:65748-65767 | None:intergenic | 40.0% |
| TGATGGAAGGATTGAGATTG+CGG | + | tig0020453:65789-65808 | None:intergenic | 40.0% | |
| ACTTCGAAGGAGTAGTTTGA+TGG | + | tig0020453:65806-65825 | None:intergenic | 40.0% | |
| AACGCATTTGTGAACTTCGA+AGG | + | tig0020453:65819-65838 | None:intergenic | 40.0% | |
| TCGAAGTTCACAAATGCGTT+TGG | - | tig0020453:65819-65838 | Msa1381780:CDS | 40.0% | |
| ! | GGATAAGAGAGTACATGAGA+AGG | + | tig0020453:65895-65914 | None:intergenic | 40.0% |
| AACGTAACAGTGAGTTACAC+CGG | + | tig0020453:65942-65961 | None:intergenic | 40.0% | |
| GTAACTCACTGTTACGTTCT+CGG | - | tig0020453:65944-65963 | Msa1381780:CDS | 40.0% | |
| GATTTCTCTGCTATTGCTCT+TGG | - | tig0020453:65998-66017 | Msa1381780:CDS | 40.0% | |
| GGTAAAAGGGTTATTCTTGC+TGG | - | tig0020453:66172-66191 | Msa1381780:CDS | 40.0% | |
| ! | GGACTATTCAGTTTGCTTCT+GGG | - | tig0020453:66194-66213 | Msa1381780:CDS | 40.0% |
| !! | TTCAGTTTGCTTCTGGGATT+AGG | - | tig0020453:66200-66219 | Msa1381780:CDS | 40.0% |
| !! | TCAGTTTGCTTCTGGGATTA+GGG | - | tig0020453:66201-66220 | Msa1381780:CDS | 40.0% |
| AAAATCTCACCAGCAGACAA+CGG | + | tig0020453:66283-66302 | None:intergenic | 40.0% | |
| ! | TTGTCTGCTGGTGAGATTTT+AGG | - | tig0020453:66283-66302 | Msa1381780:CDS | 40.0% |
| ! | TGTCTGCTGGTGAGATTTTA+GGG | - | tig0020453:66284-66303 | Msa1381780:CDS | 40.0% |
| !!! | GAGTGTTTTGGTGTTTGTGT+CGG | - | tig0020453:66351-66370 | Msa1381780:CDS | 40.0% |
| ! | AGCGTTTATGATAGCGAATC+CGG | - | tig0020453:66393-66412 | Msa1381780:CDS | 40.0% |
| TACCTAAAAGCCTTAATCCC+CGG | + | tig0020453:66415-66434 | None:intergenic | 40.0% | |
| TTAGGTATGACCCTTATGTG+GGG | - | tig0020453:66428-66447 | Msa1381780:CDS | 40.0% | |
| ATGATCATGTGGGTATGAAG+GGG | - | tig0020453:66470-66489 | Msa1381780:CDS | 40.0% | |
| !! | TGCAATTTTGAAAGCGAAGG+AGG | - | tig0020453:66504-66523 | Msa1381780:CDS | 40.0% |
| TTGAAGATTCTGTGGATGCT+TGG | - | tig0020453:66674-66693 | Msa1381780:CDS | 40.0% | |
| GTCCTAGACTCTCTATTGAT+TGG | - | tig0020453:66710-66729 | Msa1381780:CDS | 40.0% | |
| ! | CCTAGACTCTCTATTGATTG+GGG | - | tig0020453:66712-66731 | Msa1381780:CDS | 40.0% |
| CAAGGTTGTGAAGATGTTAC+AGG | - | tig0020453:66829-66848 | Msa1381780:CDS | 40.0% | |
| AAGAGCGATTGTTGCTCTAA+CGG | - | tig0020453:66859-66878 | Msa1381780:CDS | 40.0% | |
| GACTATTATGCTCAAGATGG+AGG | - | tig0020453:66934-66953 | Msa1381780:CDS | 40.0% | |
| CTATTATGCTCAAGATGGAG+GGG | - | tig0020453:66936-66955 | Msa1381780:CDS | 40.0% | |
| !!! | TTGGGTTTTTCAGGTTGTTC+TGG | + | tig0020453:65668-65687 | None:intergenic | 40.0% |
| !!! | ATGGTGTTGTTGGGTTTTTC+AGG | + | tig0020453:65677-65696 | None:intergenic | 40.0% |
| !! | GAAACAGTGATGGTGTTGTT+GGG | + | tig0020453:65686-65705 | None:intergenic | 40.0% |
| !! | AGAAACAGTGATGGTGTTGT+TGG | + | tig0020453:65687-65706 | None:intergenic | 40.0% |
| ! | TGAGGATTGAATCTGGGATT+TGG | + | tig0020453:65748-65767 | None:intergenic | 40.0% |
| TGATGGAAGGATTGAGATTG+CGG | + | tig0020453:65789-65808 | None:intergenic | 40.0% | |
| ACTTCGAAGGAGTAGTTTGA+TGG | + | tig0020453:65806-65825 | None:intergenic | 40.0% | |
| AACGCATTTGTGAACTTCGA+AGG | + | tig0020453:65819-65838 | None:intergenic | 40.0% | |
| TCGAAGTTCACAAATGCGTT+TGG | - | tig0020453:65819-65838 | Msa1381780:CDS | 40.0% | |
| ! | GGATAAGAGAGTACATGAGA+AGG | + | tig0020453:65895-65914 | None:intergenic | 40.0% |
| AACGTAACAGTGAGTTACAC+CGG | + | tig0020453:65942-65961 | None:intergenic | 40.0% | |
| GTAACTCACTGTTACGTTCT+CGG | - | tig0020453:65944-65963 | Msa1381780:CDS | 40.0% | |
| GATTTCTCTGCTATTGCTCT+TGG | - | tig0020453:65998-66017 | Msa1381780:CDS | 40.0% | |
| GGTAAAAGGGTTATTCTTGC+TGG | - | tig0020453:66172-66191 | Msa1381780:CDS | 40.0% | |
| ! | GGACTATTCAGTTTGCTTCT+GGG | - | tig0020453:66194-66213 | Msa1381780:CDS | 40.0% |
| !! | TTCAGTTTGCTTCTGGGATT+AGG | - | tig0020453:66200-66219 | Msa1381780:CDS | 40.0% |
| !! | TCAGTTTGCTTCTGGGATTA+GGG | - | tig0020453:66201-66220 | Msa1381780:CDS | 40.0% |
| AAAATCTCACCAGCAGACAA+CGG | + | tig0020453:66283-66302 | None:intergenic | 40.0% | |
| ! | TTGTCTGCTGGTGAGATTTT+AGG | - | tig0020453:66283-66302 | Msa1381780:CDS | 40.0% |
| ! | TGTCTGCTGGTGAGATTTTA+GGG | - | tig0020453:66284-66303 | Msa1381780:CDS | 40.0% |
| !!! | GAGTGTTTTGGTGTTTGTGT+CGG | - | tig0020453:66351-66370 | Msa1381780:CDS | 40.0% |
| ! | AGCGTTTATGATAGCGAATC+CGG | - | tig0020453:66393-66412 | Msa1381780:CDS | 40.0% |
| TACCTAAAAGCCTTAATCCC+CGG | + | tig0020453:66415-66434 | None:intergenic | 40.0% | |
| TTAGGTATGACCCTTATGTG+GGG | - | tig0020453:66428-66447 | Msa1381780:CDS | 40.0% | |
| ATGATCATGTGGGTATGAAG+GGG | - | tig0020453:66470-66489 | Msa1381780:CDS | 40.0% | |
| !! | TGCAATTTTGAAAGCGAAGG+AGG | - | tig0020453:66504-66523 | Msa1381780:CDS | 40.0% |
| TTGAAGATTCTGTGGATGCT+TGG | - | tig0020453:66674-66693 | Msa1381780:CDS | 40.0% | |
| GTCCTAGACTCTCTATTGAT+TGG | - | tig0020453:66710-66729 | Msa1381780:CDS | 40.0% | |
| ! | CCTAGACTCTCTATTGATTG+GGG | - | tig0020453:66712-66731 | Msa1381780:CDS | 40.0% |
| CAAGGTTGTGAAGATGTTAC+AGG | - | tig0020453:66829-66848 | Msa1381780:CDS | 40.0% | |
| AAGAGCGATTGTTGCTCTAA+CGG | - | tig0020453:66859-66878 | Msa1381780:CDS | 40.0% | |
| GACTATTATGCTCAAGATGG+AGG | - | tig0020453:66934-66953 | Msa1381780:CDS | 40.0% | |
| CTATTATGCTCAAGATGGAG+GGG | - | tig0020453:66936-66955 | Msa1381780:CDS | 40.0% | |
| GGTCGTTGAGGATTGAATCT+GGG | + | tig0020453:65754-65773 | None:intergenic | 45.0% | |
| CGAAGGAGTAGTTTGATGGA+AGG | + | tig0020453:65802-65821 | None:intergenic | 45.0% | |
| TTGAAGAGCGATGCGTTTAG+CGG | + | tig0020453:65861-65880 | None:intergenic | 45.0% | |
| ATCGCTCTTCAATTCCCTGA+AGG | - | tig0020453:65869-65888 | Msa1381780:CDS | 45.0% | |
| AGTACATGAGAAGGCCTTCA+GGG | + | tig0020453:65886-65905 | None:intergenic | 45.0% | |
| AGGTGGTGAAGATATCAGAG+AGG | + | tig0020453:65916-65935 | None:intergenic | 45.0% | |
| GTTCTCGGTGATGTTACCTA+TGG | - | tig0020453:65959-65978 | Msa1381780:CDS | 45.0% | |
| ! | GGGACTATTCAGTTTGCTTC+TGG | - | tig0020453:66193-66212 | Msa1381780:CDS | 45.0% |
| GGGGAAAGAGTTGGATGATA+AGG | - | tig0020453:66324-66343 | Msa1381780:CDS | 45.0% | |
| !!! | GTTTTGGTGTTTGTGTCGGA+TGG | - | tig0020453:66355-66374 | Msa1381780:CDS | 45.0% |
| ! | GCGTTTATGATAGCGAATCC+GGG | - | tig0020453:66394-66413 | Msa1381780:CDS | 45.0% |
| ! | CGTTTATGATAGCGAATCCG+GGG | - | tig0020453:66395-66414 | Msa1381780:CDS | 45.0% |
| ! | ATCCGGGGATTAAGGCTTTT+AGG | - | tig0020453:66410-66429 | Msa1381780:CDS | 45.0% |
| !!! | TGTGGGGAAGTTGTTTTTGG+AGG | - | tig0020453:66444-66463 | Msa1381780:CDS | 45.0% |
| !! | TTTTGAAAGCGAAGGAGGCA+AGG | - | tig0020453:66509-66528 | Msa1381780:CDS | 45.0% |
| !!! | AGGAATTGGGGCGTTGTTTT+AGG | - | tig0020453:66529-66548 | Msa1381780:CDS | 45.0% |
| !!! | GGAATTGGGGCGTTGTTTTA+GGG | - | tig0020453:66530-66549 | Msa1381780:CDS | 45.0% |
| !!! | GGCGTTGTTTTAGGGACTTT+GGG | - | tig0020453:66538-66557 | Msa1381780:CDS | 45.0% |
| TTAGGGACTTTGGGTAGACA+AGG | - | tig0020453:66547-66566 | Msa1381780:CDS | 45.0% | |
| TAGGGACTTTGGGTAGACAA+GGG | - | tig0020453:66548-66567 | Msa1381780:CDS | 45.0% | |
| CCCCAATCAATAGAGAGTCT+AGG | + | tig0020453:66715-66734 | None:intergenic | 45.0% | |
| !! | ACCAGTTCTGACTCCTTTTG+AGG | - | tig0020453:66750-66769 | Msa1381780:CDS | 45.0% |
| AGTGCTATCTCAGCCTCAAA+AGG | + | tig0020453:66766-66785 | None:intergenic | 45.0% | |
| !!! | TTTTGAGGCTGAGATAGCAC+TGG | - | tig0020453:66765-66784 | Msa1381780:CDS | 45.0% |
| ! | TTTGAGGCTGAGATAGCACT+GGG | - | tig0020453:66766-66785 | Msa1381780:CDS | 45.0% |
| ! | ATAGCACTGGGATTGATACC+TGG | - | tig0020453:66778-66797 | Msa1381780:CDS | 45.0% |
| ACCAAAATCTTCAGTCGCCT+TGG | + | tig0020453:66899-66918 | None:intergenic | 45.0% | |
| ! | AAGGCGACTGAAGATTTTGG+TGG | - | tig0020453:66898-66917 | Msa1381780:CDS | 45.0% |
| ! | ATTTTCCTAGCAGGACGACT+AGG | + | tig0020453:66988-67007 | None:intergenic | 45.0% |
| GGTCGTTGAGGATTGAATCT+GGG | + | tig0020453:65754-65773 | None:intergenic | 45.0% | |
| CGAAGGAGTAGTTTGATGGA+AGG | + | tig0020453:65802-65821 | None:intergenic | 45.0% | |
| TTGAAGAGCGATGCGTTTAG+CGG | + | tig0020453:65861-65880 | None:intergenic | 45.0% | |
| ATCGCTCTTCAATTCCCTGA+AGG | - | tig0020453:65869-65888 | Msa1381780:CDS | 45.0% | |
| AGTACATGAGAAGGCCTTCA+GGG | + | tig0020453:65886-65905 | None:intergenic | 45.0% | |
| AGGTGGTGAAGATATCAGAG+AGG | + | tig0020453:65916-65935 | None:intergenic | 45.0% | |
| GTTCTCGGTGATGTTACCTA+TGG | - | tig0020453:65959-65978 | Msa1381780:CDS | 45.0% | |
| ! | GGGACTATTCAGTTTGCTTC+TGG | - | tig0020453:66193-66212 | Msa1381780:CDS | 45.0% |
| GGGGAAAGAGTTGGATGATA+AGG | - | tig0020453:66324-66343 | Msa1381780:CDS | 45.0% | |
| !!! | GTTTTGGTGTTTGTGTCGGA+TGG | - | tig0020453:66355-66374 | Msa1381780:CDS | 45.0% |
| ! | GCGTTTATGATAGCGAATCC+GGG | - | tig0020453:66394-66413 | Msa1381780:CDS | 45.0% |
| ! | CGTTTATGATAGCGAATCCG+GGG | - | tig0020453:66395-66414 | Msa1381780:CDS | 45.0% |
| ! | ATCCGGGGATTAAGGCTTTT+AGG | - | tig0020453:66410-66429 | Msa1381780:CDS | 45.0% |
| !!! | TGTGGGGAAGTTGTTTTTGG+AGG | - | tig0020453:66444-66463 | Msa1381780:CDS | 45.0% |
| !! | TTTTGAAAGCGAAGGAGGCA+AGG | - | tig0020453:66509-66528 | Msa1381780:CDS | 45.0% |
| !!! | AGGAATTGGGGCGTTGTTTT+AGG | - | tig0020453:66529-66548 | Msa1381780:CDS | 45.0% |
| !!! | GGAATTGGGGCGTTGTTTTA+GGG | - | tig0020453:66530-66549 | Msa1381780:CDS | 45.0% |
| !!! | GGCGTTGTTTTAGGGACTTT+GGG | - | tig0020453:66538-66557 | Msa1381780:CDS | 45.0% |
| TTAGGGACTTTGGGTAGACA+AGG | - | tig0020453:66547-66566 | Msa1381780:CDS | 45.0% | |
| TAGGGACTTTGGGTAGACAA+GGG | - | tig0020453:66548-66567 | Msa1381780:CDS | 45.0% | |
| CCCCAATCAATAGAGAGTCT+AGG | + | tig0020453:66715-66734 | None:intergenic | 45.0% | |
| !! | ACCAGTTCTGACTCCTTTTG+AGG | - | tig0020453:66750-66769 | Msa1381780:CDS | 45.0% |
| AGTGCTATCTCAGCCTCAAA+AGG | + | tig0020453:66766-66785 | None:intergenic | 45.0% | |
| !!! | TTTTGAGGCTGAGATAGCAC+TGG | - | tig0020453:66765-66784 | Msa1381780:CDS | 45.0% |
| ! | TTTGAGGCTGAGATAGCACT+GGG | - | tig0020453:66766-66785 | Msa1381780:CDS | 45.0% |
| ! | ATAGCACTGGGATTGATACC+TGG | - | tig0020453:66778-66797 | Msa1381780:CDS | 45.0% |
| ACCAAAATCTTCAGTCGCCT+TGG | + | tig0020453:66899-66918 | None:intergenic | 45.0% | |
| ! | AAGGCGACTGAAGATTTTGG+TGG | - | tig0020453:66898-66917 | Msa1381780:CDS | 45.0% |
| ! | ATTTTCCTAGCAGGACGACT+AGG | + | tig0020453:66988-67007 | None:intergenic | 45.0% |
| GGGTCGTTGAGGATTGAATC+TGG | + | tig0020453:65755-65774 | None:intergenic | 50.0% | |
| ! | AGATTGCGGCGTTGAGAAGT+GGG | + | tig0020453:65775-65794 | None:intergenic | 50.0% |
| GAGTACATGAGAAGGCCTTC+AGG | + | tig0020453:65887-65906 | None:intergenic | 50.0% | |
| GATATCTTCACCACCTTCGC+CGG | - | tig0020453:65920-65939 | Msa1381780:CDS | 50.0% | |
| TAGGGCTGTGAAGCCTGAAT+TGG | - | tig0020453:66219-66238 | Msa1381780:CDS | 50.0% | |
| ! | TTTAGGGTGTACTGCACCGA+AGG | - | tig0020453:66300-66319 | Msa1381780:CDS | 50.0% |
| TCCAACTCTTTCCCCACCTT+CGG | + | tig0020453:66319-66338 | None:intergenic | 50.0% | |
| TGGTGTTTGTGTCGGATGGA+AGG | - | tig0020453:66359-66378 | Msa1381780:CDS | 50.0% | |
| GATAGCGAATCCGGGGATTA+AGG | - | tig0020453:66402-66421 | Msa1381780:CDS | 50.0% | |
| AAGCGAAGGAGGCAAGGAAT+TGG | - | tig0020453:66515-66534 | Msa1381780:CDS | 50.0% | |
| AGCGAAGGAGGCAAGGAATT+GGG | - | tig0020453:66516-66535 | Msa1381780:CDS | 50.0% | |
| !!! | GGGCGTTGTTTTAGGGACTT+TGG | - | tig0020453:66537-66556 | Msa1381780:CDS | 50.0% |
| GCCTCAAAAGGAGTCAGAAC+TGG | + | tig0020453:66754-66773 | None:intergenic | 50.0% | |
| CACTGGGATTGATACCTGGA+TGG | - | tig0020453:66782-66801 | Msa1381780:CDS | 50.0% | |
| TGGGATTGATACCTGGATGG+TGG | - | tig0020453:66785-66804 | Msa1381780:CDS | 50.0% | |
| GGGATTGATACCTGGATGGT+GGG | - | tig0020453:66786-66805 | Msa1381780:CDS | 50.0% | |
| ! | TGAGTTTTCTCCCACCATCC+AGG | + | tig0020453:66799-66818 | None:intergenic | 50.0% |
| TGTTGCTCTAACGGTAGCTG+CGG | - | tig0020453:66868-66887 | Msa1381780:CDS | 50.0% | |
| ! | GCCAAGGCGACTGAAGATTT+TGG | - | tig0020453:66895-66914 | Msa1381780:CDS | 50.0% |
| AAAAGCCTAGTCGTCCTGCT+AGG | - | tig0020453:66980-66999 | Msa1381780:CDS | 50.0% | |
| GGGTCGTTGAGGATTGAATC+TGG | + | tig0020453:65755-65774 | None:intergenic | 50.0% | |
| ! | AGATTGCGGCGTTGAGAAGT+GGG | + | tig0020453:65775-65794 | None:intergenic | 50.0% |
| GAGTACATGAGAAGGCCTTC+AGG | + | tig0020453:65887-65906 | None:intergenic | 50.0% | |
| GATATCTTCACCACCTTCGC+CGG | - | tig0020453:65920-65939 | Msa1381780:CDS | 50.0% | |
| TAGGGCTGTGAAGCCTGAAT+TGG | - | tig0020453:66219-66238 | Msa1381780:CDS | 50.0% | |
| ! | TTTAGGGTGTACTGCACCGA+AGG | - | tig0020453:66300-66319 | Msa1381780:CDS | 50.0% |
| TCCAACTCTTTCCCCACCTT+CGG | + | tig0020453:66319-66338 | None:intergenic | 50.0% | |
| TGGTGTTTGTGTCGGATGGA+AGG | - | tig0020453:66359-66378 | Msa1381780:CDS | 50.0% | |
| GATAGCGAATCCGGGGATTA+AGG | - | tig0020453:66402-66421 | Msa1381780:CDS | 50.0% | |
| AAGCGAAGGAGGCAAGGAAT+TGG | - | tig0020453:66515-66534 | Msa1381780:CDS | 50.0% | |
| AGCGAAGGAGGCAAGGAATT+GGG | - | tig0020453:66516-66535 | Msa1381780:CDS | 50.0% | |
| !!! | GGGCGTTGTTTTAGGGACTT+TGG | - | tig0020453:66537-66556 | Msa1381780:CDS | 50.0% |
| GCCTCAAAAGGAGTCAGAAC+TGG | + | tig0020453:66754-66773 | None:intergenic | 50.0% | |
| CACTGGGATTGATACCTGGA+TGG | - | tig0020453:66782-66801 | Msa1381780:CDS | 50.0% | |
| TGGGATTGATACCTGGATGG+TGG | - | tig0020453:66785-66804 | Msa1381780:CDS | 50.0% | |
| GGGATTGATACCTGGATGGT+GGG | - | tig0020453:66786-66805 | Msa1381780:CDS | 50.0% | |
| ! | TGAGTTTTCTCCCACCATCC+AGG | + | tig0020453:66799-66818 | None:intergenic | 50.0% |
| TGTTGCTCTAACGGTAGCTG+CGG | - | tig0020453:66868-66887 | Msa1381780:CDS | 50.0% | |
| ! | GCCAAGGCGACTGAAGATTT+TGG | - | tig0020453:66895-66914 | Msa1381780:CDS | 50.0% |
| AAAAGCCTAGTCGTCCTGCT+AGG | - | tig0020453:66980-66999 | Msa1381780:CDS | 50.0% | |
| CGTTGAGAAGTGGGTCGTTG+AGG | + | tig0020453:65766-65785 | None:intergenic | 55.0% | |
| ! | GAGATTGCGGCGTTGAGAAG+TGG | + | tig0020453:65776-65795 | None:intergenic | 55.0% |
| AAGAGCGATGCGTTTAGCGG+CGG | + | tig0020453:65858-65877 | None:intergenic | 55.0% | |
| ACAGTGAGTTACACCGGCGA+AGG | + | tig0020453:65936-65955 | None:intergenic | 55.0% | |
| ACCGAAGGTGGGGAAAGAGT+TGG | - | tig0020453:66315-66334 | Msa1381780:CDS | 55.0% | |
| ATGTGGGTATGAAGGGGTCG+AGG | - | tig0020453:66476-66495 | Msa1381780:CDS | 55.0% | |
| GCGAAGGAGGCAAGGAATTG+GGG | - | tig0020453:66517-66536 | Msa1381780:CDS | 55.0% | |
| GTTGCTCTAACGGTAGCTGC+GGG | - | tig0020453:66869-66888 | Msa1381780:CDS | 55.0% | |
| TTGCTCTAACGGTAGCTGCG+GGG | - | tig0020453:66870-66889 | Msa1381780:CDS | 55.0% | |
| ATGCTCAAGATGGAGGGGAG+TGG | - | tig0020453:66941-66960 | Msa1381780:CDS | 55.0% | |
| CGTTGAGAAGTGGGTCGTTG+AGG | + | tig0020453:65766-65785 | None:intergenic | 55.0% | |
| ! | GAGATTGCGGCGTTGAGAAG+TGG | + | tig0020453:65776-65795 | None:intergenic | 55.0% |
| AAGAGCGATGCGTTTAGCGG+CGG | + | tig0020453:65858-65877 | None:intergenic | 55.0% | |
| ACAGTGAGTTACACCGGCGA+AGG | + | tig0020453:65936-65955 | None:intergenic | 55.0% | |
| ACCGAAGGTGGGGAAAGAGT+TGG | - | tig0020453:66315-66334 | Msa1381780:CDS | 55.0% | |
| ATGTGGGTATGAAGGGGTCG+AGG | - | tig0020453:66476-66495 | Msa1381780:CDS | 55.0% | |
| GCGAAGGAGGCAAGGAATTG+GGG | - | tig0020453:66517-66536 | Msa1381780:CDS | 55.0% | |
| GTTGCTCTAACGGTAGCTGC+GGG | - | tig0020453:66869-66888 | Msa1381780:CDS | 55.0% | |
| TTGCTCTAACGGTAGCTGCG+GGG | - | tig0020453:66870-66889 | Msa1381780:CDS | 55.0% | |
| ATGCTCAAGATGGAGGGGAG+TGG | - | tig0020453:66941-66960 | Msa1381780:CDS | 55.0% | |
| TGCGTTTAGCGGCGGTGGAA+CGG | + | tig0020453:65850-65869 | None:intergenic | 60.0% | |
| GTGAGTTACACCGGCGAAGG+TGG | + | tig0020453:65933-65952 | None:intergenic | 60.0% | |
| GCAGACAACGGCTTCGACTG+CGG | + | tig0020453:66271-66290 | None:intergenic | 60.0% | |
| CAGTCGAAGCCGTTGTCTGC+TGG | - | tig0020453:66271-66290 | Msa1381780:CDS | 60.0% | |
| AGGGTGTACTGCACCGAAGG+TGG | - | tig0020453:66303-66322 | Msa1381780:CDS | 60.0% | |
| GGGTGTACTGCACCGAAGGT+GGG | - | tig0020453:66304-66323 | Msa1381780:CDS | 60.0% | |
| GGTGTACTGCACCGAAGGTG+GGG | - | tig0020453:66305-66324 | Msa1381780:CDS | 60.0% | |
| TGCGTTTAGCGGCGGTGGAA+CGG | + | tig0020453:65850-65869 | None:intergenic | 60.0% | |
| GTGAGTTACACCGGCGAAGG+TGG | + | tig0020453:65933-65952 | None:intergenic | 60.0% | |
| GCAGACAACGGCTTCGACTG+CGG | + | tig0020453:66271-66290 | None:intergenic | 60.0% | |
| CAGTCGAAGCCGTTGTCTGC+TGG | - | tig0020453:66271-66290 | Msa1381780:CDS | 60.0% | |
| AGGGTGTACTGCACCGAAGG+TGG | - | tig0020453:66303-66322 | Msa1381780:CDS | 60.0% | |
| GGGTGTACTGCACCGAAGGT+GGG | - | tig0020453:66304-66323 | Msa1381780:CDS | 60.0% | |
| GGTGTACTGCACCGAAGGTG+GGG | - | tig0020453:66305-66324 | Msa1381780:CDS | 60.0% | |
| AGCGATGCGTTTAGCGGCGG+TGG | + | tig0020453:65855-65874 | None:intergenic | 65.0% | |
| AGCGATGCGTTTAGCGGCGG+TGG | + | tig0020453:65855-65874 | None:intergenic | 65.0% | |
| CGGTAGCTGCGGGGATGCCA+AGG | - | tig0020453:66879-66898 | Msa1381780:CDS | 70.0% | |
| CGGTAGCTGCGGGGATGCCA+AGG | - | tig0020453:66879-66898 | Msa1381780:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020453 | gene | 65656 | 67047 | 65656 | ID=Msa1381780;Name=Msa1381780 |
| tig0020453 | mRNA | 65656 | 67047 | 65656 | ID=Msa1381780-mRNA-1;Parent=Msa1381780;Name=Msa1381780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|463 |
| tig0020453 | exon | 65656 | 67047 | 65656 | ID=Msa1381780-mRNA-1:exon:7783;Parent=Msa1381780-mRNA-1 |
| tig0020453 | CDS | 65656 | 67047 | 65656 | ID=Msa1381780-mRNA-1:cds;Parent=Msa1381780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
