AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519740 MtrunA17_Chr3g0135111 94.879 371 19 0 1 371 1 371 0.0 656
Msa0519740 MtrunA17_Chr1g0186351 54.359 195 86 2 5 198 1 193 1.55e-63 209
Msa0519740 MtrunA17_Chr3g0101061 52.764 199 84 3 1 196 28 219 2.78e-60 202
Msa0519740 MtrunA17_Chr2g0290191 52.381 189 85 2 8 196 2 185 3.69e-58 196
Msa0519740 MtrunA17_Chr5g0447761 51.042 192 87 2 5 196 1 185 4.56e-57 193
Msa0519740 MtrunA17_Chr6g0449481 41.053 190 92 3 11 199 46 216 1.07e-44 158
Msa0519740 MtrunA17_Chr3g0120721 35.294 187 101 3 11 196 19 186 3.85e-36 134
Msa0519740 MtrunA17_Chr5g0402191 31.633 196 114 2 8 203 2 177 1.37e-26 109
Msa0519740 MtrunA17_Chr5g0402191 31.308 214 112 3 11 194 93 301 3.03e-26 108
Msa0519740 MtrunA17_Chr8g0375101 31.925 213 113 6 11 194 93 302 3.60e-25 105
Msa0519740 MtrunA17_Chr8g0375101 31.156 199 117 2 8 206 2 180 3.75e-25 105
Msa0519740 MtrunA17_Chr4g0045921 28.090 267 145 8 6 263 72 300 2.11e-20 91.3
Msa0519740 MtrunA17_Chr8g0360551 24.468 188 127 2 6 193 69 241 8.57e-15 75.5
Msa0519740 MtrunA17_Chr7g0276531 43.750 80 44 1 6 84 14 93 1.52e-14 72.8
Msa0519740 MtrunA17_Chr4g0058151 30.198 202 113 6 2 195 114 295 3.38e-14 72.4
Msa0519740 MtrunA17_Chr4g0068631 30.000 180 95 6 10 184 88 241 3.61e-14 73.9
Msa0519740 MtrunA17_Chr7g0219021 46.914 81 41 1 10 88 40 120 5.67e-14 71.2
Msa0519740 MtrunA17_Chr4g0061451 44.304 79 42 1 11 87 43 121 1.05e-13 70.5
Msa0519740 MtrunA17_Chr7g0255011 23.936 188 139 2 6 193 123 306 1.14e-13 72.0
Msa0519740 MtrunA17_Chr3g0127751 43.750 80 44 1 6 84 22 101 1.69e-13 69.7
Msa0519740 MtrunA17_Chr3g0121631 36.047 86 55 0 112 197 31 116 2.18e-13 67.0
Msa0519740 MtrunA17_Chr3g0121631 38.636 88 53 1 1 87 27 114 6.35e-11 60.1
Msa0519740 MtrunA17_Chr1g0181111 30.769 195 129 3 7 195 81 275 3.66e-13 69.3
Msa0519740 MtrunA17_Chr3g0116631 27.551 196 125 5 8 198 107 290 4.66e-13 68.9
Msa0519740 MtrunA17_Chr3g0086861 45.570 79 41 1 11 87 45 123 5.41e-13 70.1
Msa0519740 MtrunA17_Chr1g0210241 43.038 79 43 1 11 87 8 86 7.30e-13 68.2
Msa0519740 MtrunA17_Chr1g0210241 35.556 90 49 2 118 202 8 93 9.00e-11 62.0
Msa0519740 MtrunA17_Chr1g0153181 26.236 263 159 12 12 262 213 452 7.99e-13 69.7
Msa0519740 MtrunA17_Chr3g0087481 26.344 186 122 5 11 192 61 235 1.45e-12 66.6
Msa0519740 MtrunA17_Chr7g0268551 23.664 262 159 7 6 266 12 233 1.53e-12 68.6
Msa0519740 MtrunA17_Chr4g0050781 35.632 87 55 1 118 203 8 94 1.60e-12 66.2
Msa0519740 MtrunA17_Chr3g0144311 36.250 80 50 1 6 84 25 104 9.14e-12 65.1
Msa0519740 MtrunA17_Chr1g0153871 26.816 179 113 5 12 187 192 355 1.05e-11 65.9
Msa0519740 MtrunA17_Chr4g0017401 37.333 75 47 0 118 192 17 91 2.10e-11 63.9
Msa0519740 MtrunA17_Chr3g0110211 26.667 240 146 7 10 245 25 238 2.24e-11 64.7
Msa0519740 MtrunA17_Chr3g0133651 27.374 179 112 5 12 187 189 352 2.29e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519740 AT1G58470.2 54.500 200 84 3 5 197 1 200 9.16e-67 215
Msa0519740 AT1G58470.1 54.500 200 84 3 5 197 1 200 9.16e-67 215
Msa0519740 AT4G14300.1 53.093 194 88 1 5 198 1 191 1.48e-64 211
Msa0519740 AT4G14300.2 53.093 194 88 1 5 198 1 191 1.48e-64 211
Msa0519740 AT4G26650.2 52.683 205 81 4 1 196 1 198 2.93e-60 201
Msa0519740 AT4G26650.1 53.299 197 78 3 7 196 12 201 6.51e-60 200
Msa0519740 AT5G55550.5 48.291 234 106 5 5 229 1 228 7.52e-60 200
Msa0519740 AT5G55550.4 48.291 234 106 5 5 229 1 228 7.52e-60 200
Msa0519740 AT5G55550.9 48.291 234 106 5 5 229 1 228 7.52e-60 200
Msa0519740 AT5G55550.7 48.291 234 106 5 5 229 1 228 7.52e-60 200
Msa0519740 AT5G55550.1 48.291 234 106 5 5 229 1 228 7.52e-60 200
Msa0519740 AT2G33410.1 48.969 194 96 2 5 198 1 191 8.82e-60 198
Msa0519740 AT5G55550.2 48.291 234 106 5 5 229 1 228 9.31e-60 200
Msa0519740 AT5G55550.3 48.291 234 106 5 5 229 1 228 9.31e-60 200
Msa0519740 AT5G55550.6 48.291 234 106 5 5 229 1 228 9.31e-60 200
Msa0519740 AT5G55550.11 48.291 234 106 5 5 229 1 228 9.31e-60 200
Msa0519740 AT3G07810.1 51.562 192 88 2 5 196 1 187 1.60e-59 200
Msa0519740 AT3G07810.2 51.562 192 88 2 5 196 1 187 1.62e-59 200
Msa0519740 AT5G47620.1 45.755 212 99 2 5 207 1 205 5.29e-53 181
Msa0519740 AT5G47620.2 45.755 212 99 2 5 207 1 205 5.29e-53 181
Msa0519740 AT5G47620.5 45.755 212 99 2 5 207 1 205 5.29e-53 181
Msa0519740 AT5G55550.8 39.024 287 101 6 5 229 1 275 2.99e-51 178
Msa0519740 AT5G55550.10 39.024 287 101 6 5 229 1 275 4.46e-51 178
Msa0519740 AT5G47620.4 41.453 234 99 3 5 207 1 227 6.15e-48 169
Msa0519740 AT5G40490.1 41.799 189 90 3 11 198 43 212 9.10e-42 151
Msa0519740 AT3G13224.2 37.766 188 99 2 10 196 19 189 2.79e-40 146
Msa0519740 AT3G13224.3 37.968 187 98 2 11 196 11 180 5.45e-40 145
Msa0519740 AT3G13224.3 44.048 84 46 1 112 195 5 87 4.01e-16 79.3
Msa0519740 AT1G17640.2 41.146 192 96 2 11 201 67 242 1.40e-39 144
Msa0519740 AT1G17640.1 41.146 192 96 2 11 201 67 242 1.40e-39 144
Msa0519740 AT1G17640.3 41.146 192 96 2 11 201 67 242 1.40e-39 144
Msa0519740 AT3G13224.1 39.394 165 83 2 11 175 20 167 2.96e-36 132
Msa0519740 AT3G13224.1 46.154 78 41 1 118 195 20 96 2.51e-15 75.1
Msa0519740 AT5G40490.2 40.936 171 81 3 29 198 44 195 2.64e-35 134
Msa0519740 AT5G40490.2 40.741 81 46 2 124 204 32 110 1.05e-11 66.2
Msa0519740 AT4G36960.1 36.702 188 99 2 11 198 4 171 1.76e-31 123
Msa0519740 AT4G36960.1 27.083 240 130 3 11 207 92 329 2.35e-19 89.0
Msa0519740 AT4G36960.2 36.702 188 99 2 11 198 4 171 1.76e-31 123
Msa0519740 AT4G36960.2 27.083 240 130 3 11 207 92 329 2.35e-19 89.0
Msa0519740 AT5G47620.3 43.919 148 67 2 69 207 5 145 5.07e-30 119
Msa0519740 AT5G47620.3 34.043 94 59 2 7 99 43 134 3.68e-12 67.4
Msa0519740 AT5G50250.1 29.843 191 116 4 8 195 111 286 5.80e-18 83.6
Msa0519740 AT3G15010.1 26.154 195 127 5 1 193 64 243 5.08e-17 82.4
Msa0519740 AT3G15010.2 26.154 195 127 5 1 193 64 243 5.08e-17 82.4
Msa0519740 AT4G24770.1 28.934 197 122 4 2 195 142 323 8.93e-17 80.9
Msa0519740 AT4G24770.2 28.934 197 122 4 2 195 142 323 8.93e-17 80.9
Msa0519740 AT3G52380.1 31.892 185 110 6 8 188 114 286 5.97e-14 72.4
Msa0519740 AT3G23830.2 45.679 81 42 1 10 88 35 115 1.16e-13 68.2
Msa0519740 AT3G23830.2 39.506 81 48 1 116 195 34 114 3.74e-12 63.5
Msa0519740 AT3G23830.1 45.679 81 42 1 10 88 35 115 1.16e-13 68.2
Msa0519740 AT3G23830.1 39.506 81 48 1 116 195 34 114 3.74e-12 63.5
Msa0519740 AT3G54770.3 41.250 80 46 1 6 84 13 92 2.56e-13 69.7
Msa0519740 AT3G56860.9 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.11 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.8 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.5 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.7 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.2 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.6 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.10 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.3 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.1 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G56860.4 24.500 200 125 4 11 197 141 327 3.00e-13 71.2
Msa0519740 AT3G54770.1 41.250 80 46 1 6 84 13 92 3.07e-13 69.7
Msa0519740 AT1G03457.2 27.513 189 122 5 6 194 8 181 4.36e-13 70.5
Msa0519740 AT1G76460.1 40.000 80 47 1 6 84 20 99 6.66e-13 68.9
Msa0519740 AT1G20880.2 41.250 80 46 1 6 84 20 99 1.10e-12 68.2
Msa0519740 AT1G20880.3 41.250 80 46 1 6 84 20 99 1.10e-12 68.2
Msa0519740 AT1G20880.1 41.250 80 46 1 6 84 20 99 1.10e-12 68.2
Msa0519740 AT5G61030.2 43.210 81 44 1 10 88 40 120 1.38e-12 68.2
Msa0519740 AT5G61030.1 43.210 81 44 1 10 88 40 120 1.38e-12 68.2
Msa0519740 AT2G37220.1 28.646 192 130 4 11 195 92 283 1.49e-12 67.8
Msa0519740 AT2G41060.1 23.656 186 126 2 11 192 129 302 4.31e-12 67.8
Msa0519740 AT2G41060.3 23.656 186 126 2 11 192 129 302 4.31e-12 67.8
Msa0519740 AT2G41060.2 23.656 186 126 2 11 192 129 302 4.31e-12 67.8
Msa0519740 AT3G16380.1 25.843 267 165 11 6 265 198 438 4.97e-12 67.8
Msa0519740 AT5G53720.1 41.026 78 46 0 115 192 7 84 5.97e-12 62.0
Msa0519740 AT1G01080.1 29.082 196 125 5 10 202 108 292 6.55e-12 66.2
Msa0519740 AT2G18510.1 25.714 245 145 8 10 242 25 244 6.70e-12 66.6
Msa0519740 AT2G16940.5 28.495 186 125 4 6 189 37 216 9.13e-12 66.6
Msa0519740 AT2G16940.4 28.495 186 125 4 6 189 37 216 9.13e-12 66.6
Msa0519740 AT1G03457.1 25.279 269 155 8 6 270 8 234 1.10e-11 66.2
Msa0519740 AT1G22330.1 33.929 112 63 3 6 106 13 124 1.17e-11 65.5
Msa0519740 AT1G71770.1 25.974 231 140 9 12 226 241 456 1.44e-11 66.2
Msa0519740 AT1G71770.2 25.974 231 140 9 12 226 241 456 1.44e-11 66.2
Msa0519740 AT5G54900.1 25.969 258 141 10 3 250 147 364 1.45e-11 65.9
Msa0519740 AT1G60650.2 35.714 112 70 2 9 118 11 122 1.64e-11 64.7
Msa0519740 AT1G60650.1 35.714 112 70 2 9 118 11 122 1.64e-11 64.7
Msa0519740 AT1G74230.1 45.455 77 41 1 10 85 34 110 2.02e-11 64.7
Msa0519740 AT4G16280.4 26.776 183 103 5 7 184 42 198 3.40e-11 65.1
Msa0519740 AT4G34110.1 24.812 266 158 11 12 262 217 455 3.40e-11 65.1
Msa0519740 AT4G34110.1 21.296 216 145 6 12 224 126 319 9.57e-11 63.9
Msa0519740 AT4G16280.2 26.230 183 104 4 7 184 117 273 3.93e-11 65.1
Msa0519740 AT1G22910.2 36.250 80 50 1 6 84 9 88 4.29e-11 63.2
Msa0519740 AT1G22910.1 36.250 80 50 1 6 84 9 88 4.74e-11 62.8
Msa0519740 AT4G03110.2 25.379 264 154 8 11 270 19 243 5.54e-11 64.3
Msa0519740 AT2G16940.2 27.419 186 127 4 6 189 227 406 5.77e-11 64.3
Msa0519740 AT5G04280.1 40.698 86 50 1 118 202 8 93 7.11e-11 63.2
Msa0519740 AT4G16280.3 26.776 183 103 5 7 184 117 273 7.18e-11 63.9
Msa0519740 AT2G16940.1 27.419 186 127 4 6 189 178 357 8.34e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTGATTTGGGGATTT+AGG 0.140816 3_4:+72007978 Msa0519740:five_prime_UTR
ATGCAAAACGTCACCGTATT+TGG 0.184645 3_4:-72008108 None:intergenic
CAAGATACCCATCTTATTCT+TGG 0.209187 3_4:+72008221 Msa0519740:CDS
CGTCACCGTATTTGGTAAAA+TGG 0.226718 3_4:-72008100 None:intergenic
TCAATTGATTTGGGGATTTA+GGG 0.262100 3_4:+72007979 Msa0519740:five_prime_UTR
TAGGTAGTGGTGCCGGAAAT+TGG 0.271241 3_4:+72009131 Msa0519740:CDS
CAGCTCCATCAGATGTTTAT+AGG 0.291134 3_4:+72008999 Msa0519740:CDS
CAGTGCCATGAATTTCAAAA+TGG 0.298628 3_4:+72008010 Msa0519740:exon
TGTTGTAGCTGTTCACTTCT+CGG 0.300233 3_4:-72008452 None:intergenic
CAGATGTTTATAGGAACTTA+TGG 0.312353 3_4:+72009008 Msa0519740:CDS
TACGGGTGGGTATGGGTATG+GGG 0.336881 3_4:+72008964 Msa0519740:CDS
CCTACTAGTGATGGAGTATA+TGG 0.341321 3_4:+72008908 Msa0519740:CDS
CAAAATCAATTACAGAATAG+AGG 0.343506 3_4:+72008473 Msa0519740:CDS
ACCCGAATCCCTAGAGGTTT+CGG 0.349926 3_4:+72008155 Msa0519740:CDS
GGTGGTAGTGTTGGAATAGT+AGG 0.365653 3_4:+72009112 Msa0519740:CDS
AGGTAGTGGTGCCGGAAATT+GGG 0.368504 3_4:+72009132 Msa0519740:CDS
CTACGGGTGGGTATGGGTAT+GGG 0.381893 3_4:+72008963 Msa0519740:CDS
CCTACGGGTGGGTATGGGTA+TGG 0.383326 3_4:+72008962 Msa0519740:CDS
TGGTACCCTACGGGTGGGTA+TGG 0.397098 3_4:+72008956 Msa0519740:CDS
GAAGCTTTAGGAACAGAGTA+AGG 0.397178 3_4:+72007952 Msa0519740:five_prime_UTR
AACCGAAACCTCTAGGGATT+CGG 0.398030 3_4:-72008157 None:intergenic
ACCGAAACCTCTAGGGATTC+GGG 0.400700 3_4:-72008156 None:intergenic
ATAAGATATAAGAGTGATAG+AGG 0.401002 3_4:+72008815 Msa0519740:CDS
AAGAGGTACTTTGAGAGGTT+TGG 0.403952 3_4:+72008596 Msa0519740:CDS
AATGTGGGAATGAACATATT+AGG 0.405130 3_4:+72008519 Msa0519740:CDS
ACAAATCCATTGACAATATG+AGG 0.410512 3_4:-72009202 None:intergenic
GACCAGCCTCATATTGTCAA+TGG 0.418491 3_4:+72009196 Msa0519740:CDS
ACAGTAAAGTATGAAGCTTT+AGG 0.422918 3_4:+72007940 Msa0519740:five_prime_UTR
GCTGTATATAGGTAGAAGTT+AGG 0.446414 3_4:+72008420 Msa0519740:intron
TTACCTTTGCCTACTAGTGA+TGG 0.454799 3_4:+72008899 Msa0519740:CDS
AACTGATGTCGTGGTGATGC+AGG 0.456579 3_4:+72008625 Msa0519740:CDS
ACGGGTGGGTATGGGTATGG+GGG 0.458994 3_4:+72008965 Msa0519740:CDS
GTAGGCAGGTGGAGGTTAAG+AGG 0.461437 3_4:+72008747 Msa0519740:CDS
TATGGTGGGCAAATGGTAAC+TGG 0.461446 3_4:+72009031 Msa0519740:CDS
AGAGGGCAGTTCCGAGGGAG+GGG 0.471408 3_4:+72008765 Msa0519740:CDS
GAATAAGATGGGTATCTTGA+AGG 0.478134 3_4:-72008217 None:intergenic
CTATGGTTGTTGGTACCCTA+CGG 0.479004 3_4:+72008946 Msa0519740:CDS
ATTTGTTACAGACCCAAGAA+TGG 0.485190 3_4:-72009164 None:intergenic
AGGGAACATGTTTCCTGCCA+TGG 0.485899 3_4:+72008871 Msa0519740:CDS
GGTACCCTACGGGTGGGTAT+GGG 0.489172 3_4:+72008957 Msa0519740:CDS
TCATGACTTGAATGGTAGGC+AGG 0.489984 3_4:+72008733 Msa0519740:CDS
AGTTTAAGAGGTACTTTGAG+AGG 0.492503 3_4:+72008591 Msa0519740:CDS
CTTATGGTATGGTGGGCAAA+TGG 0.494724 3_4:+72009024 Msa0519740:CDS
TGGTCCTCAGGCTTATCATC+AGG 0.495120 3_4:+72009051 Msa0519740:CDS
GTAACGAAACCGAAACCTCT+AGG 0.497010 3_4:-72008164 None:intergenic
GGTTAAGAGGGCAGTTCCGA+GGG 0.504393 3_4:+72008760 Msa0519740:CDS
AAAATCAATTACAGAATAGA+GGG 0.505361 3_4:+72008474 Msa0519740:CDS
GGTAGTGGTGCCGGAAATTG+GGG 0.509354 3_4:+72009133 Msa0519740:CDS
CCATCTTATTCTTGGACGAA+AGG 0.510048 3_4:+72008229 Msa0519740:CDS
GCTATAGTGGTTACGAATGT+GGG 0.511670 3_4:+72008504 Msa0519740:CDS
TGTCTGTGGAAGAGTTTAAG+AGG 0.514084 3_4:+72008579 Msa0519740:CDS
TTCAATATGCCATCGCCTCA+TGG 0.514604 3_4:+72009229 Msa0519740:CDS
CCTTTCGTCCAAGAATAAGA+TGG 0.515929 3_4:-72008229 None:intergenic
CGTAGGGTACCAACAACCAT+AGG 0.517439 3_4:-72008945 None:intergenic
CATGGTGTAAAGCAGATTGT+TGG 0.518341 3_4:+72009247 Msa0519740:CDS
AGAGGGGCGAATAGCTATAG+TGG 0.519443 3_4:+72008491 Msa0519740:CDS
TGAGGCGATGGCATATTGAA+TGG 0.519793 3_4:-72009226 None:intergenic
GCAAATGGTAACTGGTCCTC+AGG 0.523351 3_4:+72009039 Msa0519740:CDS
GATCAAATCCCTATGGTTGT+TGG 0.523642 3_4:+72008936 Msa0519740:CDS
CCATATACTCCATCACTAGT+AGG 0.526921 3_4:-72008908 None:intergenic
AGCTATAGTGGTTACGAATG+TGG 0.527900 3_4:+72008503 Msa0519740:CDS
GAATCAACATTCCCCTCCCT+CGG 0.539260 3_4:-72008776 None:intergenic
CGGGTGGGTATGGGTATGGG+GGG 0.541423 3_4:+72008966 Msa0519740:CDS
CTCTAGGGATTCGGGTGGTG+CGG 0.543791 3_4:-72008148 None:intergenic
TAGGCAGGTGGAGGTTAAGA+GGG 0.544226 3_4:+72008748 Msa0519740:CDS
AATAAGATGGGTATCTTGAA+GGG 0.544817 3_4:-72008216 None:intergenic
TATAGGAACTTATGGTATGG+TGG 0.545556 3_4:+72009016 Msa0519740:CDS
ATGGCAGGAAACATGTTCCC+TGG 0.546559 3_4:-72008869 None:intergenic
ACATGTTCCCTGGACTAGAA+TGG 0.547477 3_4:-72008859 None:intergenic
AAGTTCCTATAAACATCTGA+TGG 0.548675 3_4:-72009004 None:intergenic
GAGGGGAATGTTGATTCTGA+GGG 0.551220 3_4:+72008782 Msa0519740:CDS
AAGCTTTAGGAACAGAGTAA+GGG 0.551449 3_4:+72007953 Msa0519740:five_prime_UTR
ATAGGAACTTATGGTATGGT+GGG 0.551798 3_4:+72009017 Msa0519740:CDS
ATCCATTGACAATATGAGGC+TGG 0.552395 3_4:-72009198 None:intergenic
GTTTATAGGAACTTATGGTA+TGG 0.554821 3_4:+72009013 Msa0519740:CDS
CTTTCGTCCAAGAATAAGAT+GGG 0.555266 3_4:-72008228 None:intergenic
AAAGGTAAAGGAGCCATGGC+AGG 0.555428 3_4:-72008884 None:intergenic
AATGCCACCGACGAAGAGCT+TGG 0.555484 3_4:-72008045 None:intergenic
TATGGTTGTTGGTACCCTAC+GGG 0.556496 3_4:+72008947 Msa0519740:CDS
AGTGATGGAGTATATGGATA+CGG 0.560073 3_4:+72008914 Msa0519740:CDS
AGGCAAAGGTAAAGGAGCCA+TGG 0.560567 3_4:-72008888 None:intergenic
TCACTAGTAGGCAAAGGTAA+AGG 0.562957 3_4:-72008896 None:intergenic
TGCTTTACACCATGAGGCGA+TGG 0.564045 3_4:-72009238 None:intergenic
AAGAGGGCAGTTCCGAGGGA+GGG 0.564061 3_4:+72008764 Msa0519740:CDS
CTTGAATGGTAGGCAGGTGG+AGG 0.564078 3_4:+72008739 Msa0519740:CDS
TAAGAGGGCAGTTCCGAGGG+AGG 0.576798 3_4:+72008763 Msa0519740:CDS
GGAGGGGAATGTTGATTCTG+AGG 0.578456 3_4:+72008781 Msa0519740:CDS
TCTTCCACAGACATATTAGC+AGG 0.580172 3_4:-72008569 None:intergenic
ATAGTGTAACTCATAGGCCG+AGG 0.580477 3_4:+72008648 Msa0519740:CDS
ATGTCAAGTGTTGTATATGT+AGG 0.581727 3_4:+72009091 Msa0519740:CDS
TAACGAAACCGAAACCTCTA+GGG 0.582846 3_4:-72008163 None:intergenic
GGTTGTTGGTACCCTACGGG+TGG 0.587178 3_4:+72008950 Msa0519740:CDS
GGAATAGTAGGTAGTGGTGC+CGG 0.589920 3_4:+72009124 Msa0519740:CDS
AGGTTAAGAGGGCAGTTCCG+AGG 0.593306 3_4:+72008759 Msa0519740:CDS
GATAAAGCCAAGCTCTTCGT+CGG 0.601660 3_4:+72008038 Msa0519740:CDS
TGCAGGATAGTGTAACTCAT+AGG 0.602760 3_4:+72008642 Msa0519740:CDS
TAGTGTAACTCATAGGCCGA+GGG 0.612340 3_4:+72008649 Msa0519740:CDS
GGATACGGATCAAATCCCTA+TGG 0.612447 3_4:+72008929 Msa0519740:CDS
CTTGACATAACATTAGCGTA+AGG 0.614433 3_4:-72009076 None:intergenic
GTAGGGTACCAACAACCATA+GGG 0.623021 3_4:-72008944 None:intergenic
GTATATGTAGGTGGTAGTGT+TGG 0.626577 3_4:+72009103 Msa0519740:CDS
GTTGTTGGTACCCTACGGGT+GGG 0.634108 3_4:+72008951 Msa0519740:CDS
ACTCCATCACTAGTAGGCAA+AGG 0.634270 3_4:-72008902 None:intergenic
CCATACCCATACCCACCCGT+AGG 0.634708 3_4:-72008962 None:intergenic
TGACTTGAATGGTAGGCAGG+TGG 0.636473 3_4:+72008736 Msa0519740:CDS
CATACCCATACCCACCCGTA+GGG 0.641911 3_4:-72008961 None:intergenic
TTTACCTGCTAATATGTCTG+TGG 0.643615 3_4:+72008565 Msa0519740:CDS
AGTGTTGGAATAGTAGGTAG+TGG 0.645738 3_4:+72009118 Msa0519740:CDS
AAAGCCAAGCTCTTCGTCGG+TGG 0.645926 3_4:+72008041 Msa0519740:CDS
TGGTCGAATAACTGATGTCG+TGG 0.654008 3_4:+72008616 Msa0519740:CDS
CGCACCACCCGAATCCCTAG+AGG 0.656654 3_4:+72008149 Msa0519740:CDS
ATATAAGAGTGATAGAGGAG+CGG 0.665022 3_4:+72008820 Msa0519740:CDS
TCAAGTGTTGTATATGTAGG+TGG 0.672547 3_4:+72009094 Msa0519740:CDS
ACAATCTGCTTTACACCATG+AGG 0.677423 3_4:-72009244 None:intergenic
GTGTAACTCATAGGCCGAGG+GGG 0.683925 3_4:+72008651 Msa0519740:CDS
GGCACCTGATGATAAGCCTG+AGG 0.693812 3_4:-72009055 None:intergenic
AAATCAATTACAGAATAGAG+GGG 0.700050 3_4:+72008475 Msa0519740:CDS
AGTGTAACTCATAGGCCGAG+GGG 0.715312 3_4:+72008650 Msa0519740:CDS
GAAACCTCTAGGGATTCGGG+TGG 0.730884 3_4:-72008153 None:intergenic
GTAGTGGTGCCGGAAATTGG+GGG 0.748996 3_4:+72009134 Msa0519740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTGAAAACAAAAAATTA+AGG - chr3_4:72008295-72008314 None:intergenic 15.0%
!! AAAGTGAAAACAAAAAATTA+AGG - chr3_4:72008295-72008314 None:intergenic 15.0%
!! AAAATCAATTACAGAATAGA+GGG + chr3_4:72008474-72008493 Msa0519740:CDS 20.0%
!! AAAATCAATTACAGAATAGA+GGG + chr3_4:72008474-72008493 Msa0519740:CDS 20.0%
!!! TAAGGGTTTTCAATTGATTT+GGG + chr3_4:72007970-72007989 Msa0519740:five_prime_UTR 25.0%
!!! AGAATCCATTTTGAAATTCA+TGG - chr3_4:72008018-72008037 None:intergenic 25.0%
!! AAACACCATTTTACCAAATA+CGG + chr3_4:72008095-72008114 Msa0519740:CDS 25.0%
! GTAAATTGTGTTTGTTTGAT+TGG + chr3_4:72008387-72008406 Msa0519740:intron 25.0%
! CAAAATCAATTACAGAATAG+AGG + chr3_4:72008473-72008492 Msa0519740:CDS 25.0%
! AAATCAATTACAGAATAGAG+GGG + chr3_4:72008475-72008494 Msa0519740:CDS 25.0%
! ATAAGATATAAGAGTGATAG+AGG + chr3_4:72008815-72008834 Msa0519740:CDS 25.0%
!!! TAAGGGTTTTCAATTGATTT+GGG + chr3_4:72007970-72007989 Msa0519740:five_prime_UTR 25.0%
!!! AGAATCCATTTTGAAATTCA+TGG - chr3_4:72008018-72008037 None:intergenic 25.0%
!! AAACACCATTTTACCAAATA+CGG + chr3_4:72008095-72008114 Msa0519740:CDS 25.0%
! GTAAATTGTGTTTGTTTGAT+TGG + chr3_4:72008387-72008406 Msa0519740:intron 25.0%
! CAAAATCAATTACAGAATAG+AGG + chr3_4:72008473-72008492 Msa0519740:CDS 25.0%
! AAATCAATTACAGAATAGAG+GGG + chr3_4:72008475-72008494 Msa0519740:CDS 25.0%
! ATAAGATATAAGAGTGATAG+AGG + chr3_4:72008815-72008834 Msa0519740:CDS 25.0%
ACAGTAAAGTATGAAGCTTT+AGG + chr3_4:72007940-72007959 Msa0519740:five_prime_UTR 30.0%
! GTAAGGGTTTTCAATTGATT+TGG + chr3_4:72007969-72007988 Msa0519740:five_prime_UTR 30.0%
!!! AAGGGTTTTCAATTGATTTG+GGG + chr3_4:72007971-72007990 Msa0519740:five_prime_UTR 30.0%
!! TTCAATTGATTTGGGGATTT+AGG + chr3_4:72007978-72007997 Msa0519740:five_prime_UTR 30.0%
!! TCAATTGATTTGGGGATTTA+GGG + chr3_4:72007979-72007998 Msa0519740:five_prime_UTR 30.0%
AATAAGATGGGTATCTTGAA+GGG - chr3_4:72008219-72008238 None:intergenic 30.0%
!! TGTTTGTTTGATTGGTTTCA+TGG + chr3_4:72008395-72008414 Msa0519740:intron 30.0%
AATGTGGGAATGAACATATT+AGG + chr3_4:72008519-72008538 Msa0519740:CDS 30.0%
! AGGACTAAGAAGATTTTTGT+TGG + chr3_4:72008539-72008558 Msa0519740:CDS 30.0%
! ACTAAGAAGATTTTTGTTGG+TGG + chr3_4:72008542-72008561 Msa0519740:CDS 30.0%
!! TACTTTTGATTCTGAAGACT+CGG + chr3_4:72008685-72008704 Msa0519740:CDS 30.0%
! ACAAGTTTTCATGACTTGAA+TGG + chr3_4:72008725-72008744 Msa0519740:CDS 30.0%
AAGTTCCTATAAACATCTGA+TGG - chr3_4:72009007-72009026 None:intergenic 30.0%
CAGATGTTTATAGGAACTTA+TGG + chr3_4:72009008-72009027 Msa0519740:CDS 30.0%
GTTTATAGGAACTTATGGTA+TGG + chr3_4:72009013-72009032 Msa0519740:CDS 30.0%
! ATGTCAAGTGTTGTATATGT+AGG + chr3_4:72009091-72009110 Msa0519740:CDS 30.0%
ACAAATCCATTGACAATATG+AGG - chr3_4:72009205-72009224 None:intergenic 30.0%
!!! TCAAGTTTTAAAGGAAGCAA+TGG + chr3_4:72009274-72009293 Msa0519740:CDS 30.0%
ACAGTAAAGTATGAAGCTTT+AGG + chr3_4:72007940-72007959 Msa0519740:five_prime_UTR 30.0%
! GTAAGGGTTTTCAATTGATT+TGG + chr3_4:72007969-72007988 Msa0519740:five_prime_UTR 30.0%
!!! AAGGGTTTTCAATTGATTTG+GGG + chr3_4:72007971-72007990 Msa0519740:five_prime_UTR 30.0%
!! TTCAATTGATTTGGGGATTT+AGG + chr3_4:72007978-72007997 Msa0519740:five_prime_UTR 30.0%
!! TCAATTGATTTGGGGATTTA+GGG + chr3_4:72007979-72007998 Msa0519740:five_prime_UTR 30.0%
AATAAGATGGGTATCTTGAA+GGG - chr3_4:72008219-72008238 None:intergenic 30.0%
!! TGTTTGTTTGATTGGTTTCA+TGG + chr3_4:72008395-72008414 Msa0519740:intron 30.0%
AATGTGGGAATGAACATATT+AGG + chr3_4:72008519-72008538 Msa0519740:CDS 30.0%
! AGGACTAAGAAGATTTTTGT+TGG + chr3_4:72008539-72008558 Msa0519740:CDS 30.0%
! ACTAAGAAGATTTTTGTTGG+TGG + chr3_4:72008542-72008561 Msa0519740:CDS 30.0%
!! TACTTTTGATTCTGAAGACT+CGG + chr3_4:72008685-72008704 Msa0519740:CDS 30.0%
! ACAAGTTTTCATGACTTGAA+TGG + chr3_4:72008725-72008744 Msa0519740:CDS 30.0%
AAGTTCCTATAAACATCTGA+TGG - chr3_4:72009007-72009026 None:intergenic 30.0%
CAGATGTTTATAGGAACTTA+TGG + chr3_4:72009008-72009027 Msa0519740:CDS 30.0%
GTTTATAGGAACTTATGGTA+TGG + chr3_4:72009013-72009032 Msa0519740:CDS 30.0%
! ATGTCAAGTGTTGTATATGT+AGG + chr3_4:72009091-72009110 Msa0519740:CDS 30.0%
ACAAATCCATTGACAATATG+AGG - chr3_4:72009205-72009224 None:intergenic 30.0%
!!! TCAAGTTTTAAAGGAAGCAA+TGG + chr3_4:72009274-72009293 Msa0519740:CDS 30.0%
!! AAGCTTTAGGAACAGAGTAA+GGG + chr3_4:72007953-72007972 Msa0519740:five_prime_UTR 35.0%
CAGTGCCATGAATTTCAAAA+TGG + chr3_4:72008010-72008029 Msa0519740:exon 35.0%
GAATAAGATGGGTATCTTGA+AGG - chr3_4:72008220-72008239 None:intergenic 35.0%
CAAGATACCCATCTTATTCT+TGG + chr3_4:72008221-72008240 Msa0519740:CDS 35.0%
CTTTCGTCCAAGAATAAGAT+GGG - chr3_4:72008231-72008250 None:intergenic 35.0%
TTATTCTTGGACGAAAGGTT+CGG + chr3_4:72008234-72008253 Msa0519740:intron 35.0%
GTTTCATGGTTGCTGTATAT+AGG + chr3_4:72008409-72008428 Msa0519740:intron 35.0%
GCTGTATATAGGTAGAAGTT+AGG + chr3_4:72008420-72008439 Msa0519740:intron 35.0%
TTTACCTGCTAATATGTCTG+TGG + chr3_4:72008565-72008584 Msa0519740:CDS 35.0%
!! AGTTTAAGAGGTACTTTGAG+AGG + chr3_4:72008591-72008610 Msa0519740:CDS 35.0%
! GTTTTCATGACTTGAATGGT+AGG + chr3_4:72008729-72008748 Msa0519740:CDS 35.0%
ATATAAGAGTGATAGAGGAG+CGG + chr3_4:72008820-72008839 Msa0519740:CDS 35.0%
! AGTGATGGAGTATATGGATA+CGG + chr3_4:72008914-72008933 Msa0519740:CDS 35.0%
TATAGGAACTTATGGTATGG+TGG + chr3_4:72009016-72009035 Msa0519740:CDS 35.0%
ATAGGAACTTATGGTATGGT+GGG + chr3_4:72009017-72009036 Msa0519740:CDS 35.0%
CTTGACATAACATTAGCGTA+AGG - chr3_4:72009079-72009098 None:intergenic 35.0%
! TCAAGTGTTGTATATGTAGG+TGG + chr3_4:72009094-72009113 Msa0519740:CDS 35.0%
! ATTTGTTACAGACCCAAGAA+TGG - chr3_4:72009167-72009186 None:intergenic 35.0%
!! AAGCTTTAGGAACAGAGTAA+GGG + chr3_4:72007953-72007972 Msa0519740:five_prime_UTR 35.0%
CAGTGCCATGAATTTCAAAA+TGG + chr3_4:72008010-72008029 Msa0519740:exon 35.0%
GAATAAGATGGGTATCTTGA+AGG - chr3_4:72008220-72008239 None:intergenic 35.0%
CAAGATACCCATCTTATTCT+TGG + chr3_4:72008221-72008240 Msa0519740:CDS 35.0%
CTTTCGTCCAAGAATAAGAT+GGG - chr3_4:72008231-72008250 None:intergenic 35.0%
TTATTCTTGGACGAAAGGTT+CGG + chr3_4:72008234-72008253 Msa0519740:intron 35.0%
GTTTCATGGTTGCTGTATAT+AGG + chr3_4:72008409-72008428 Msa0519740:intron 35.0%
GCTGTATATAGGTAGAAGTT+AGG + chr3_4:72008420-72008439 Msa0519740:intron 35.0%
TTTACCTGCTAATATGTCTG+TGG + chr3_4:72008565-72008584 Msa0519740:CDS 35.0%
!! AGTTTAAGAGGTACTTTGAG+AGG + chr3_4:72008591-72008610 Msa0519740:CDS 35.0%
! GTTTTCATGACTTGAATGGT+AGG + chr3_4:72008729-72008748 Msa0519740:CDS 35.0%
ATATAAGAGTGATAGAGGAG+CGG + chr3_4:72008820-72008839 Msa0519740:CDS 35.0%
! AGTGATGGAGTATATGGATA+CGG + chr3_4:72008914-72008933 Msa0519740:CDS 35.0%
TATAGGAACTTATGGTATGG+TGG + chr3_4:72009016-72009035 Msa0519740:CDS 35.0%
ATAGGAACTTATGGTATGGT+GGG + chr3_4:72009017-72009036 Msa0519740:CDS 35.0%
CTTGACATAACATTAGCGTA+AGG - chr3_4:72009079-72009098 None:intergenic 35.0%
! TCAAGTGTTGTATATGTAGG+TGG + chr3_4:72009094-72009113 Msa0519740:CDS 35.0%
! ATTTGTTACAGACCCAAGAA+TGG - chr3_4:72009167-72009186 None:intergenic 35.0%
!! GAAGCTTTAGGAACAGAGTA+AGG + chr3_4:72007952-72007971 Msa0519740:five_prime_UTR 40.0%
CGTCACCGTATTTGGTAAAA+TGG - chr3_4:72008103-72008122 None:intergenic 40.0%
ATGCAAAACGTCACCGTATT+TGG - chr3_4:72008111-72008130 None:intergenic 40.0%
TAACGAAACCGAAACCTCTA+GGG - chr3_4:72008166-72008185 None:intergenic 40.0%
CCTTTCGTCCAAGAATAAGA+TGG - chr3_4:72008232-72008251 None:intergenic 40.0%
CCATCTTATTCTTGGACGAA+AGG + chr3_4:72008229-72008248 Msa0519740:CDS 40.0%
TGTTGTAGCTGTTCACTTCT+CGG - chr3_4:72008455-72008474 None:intergenic 40.0%
AGCTATAGTGGTTACGAATG+TGG + chr3_4:72008503-72008522 Msa0519740:CDS 40.0%
GCTATAGTGGTTACGAATGT+GGG + chr3_4:72008504-72008523 Msa0519740:CDS 40.0%
TCTTCCACAGACATATTAGC+AGG - chr3_4:72008572-72008591 None:intergenic 40.0%
TGTCTGTGGAAGAGTTTAAG+AGG + chr3_4:72008579-72008598 Msa0519740:CDS 40.0%
!! AAGAGGTACTTTGAGAGGTT+TGG + chr3_4:72008596-72008615 Msa0519740:CDS 40.0%
TGCAGGATAGTGTAACTCAT+AGG + chr3_4:72008642-72008661 Msa0519740:CDS 40.0%
! AGTTTTCACCATTCTAGTCC+AGG + chr3_4:72008851-72008870 Msa0519740:CDS 40.0%
! GTTTTCACCATTCTAGTCCA+GGG + chr3_4:72008852-72008871 Msa0519740:CDS 40.0%
TCACTAGTAGGCAAAGGTAA+AGG - chr3_4:72008899-72008918 None:intergenic 40.0%
TTACCTTTGCCTACTAGTGA+TGG + chr3_4:72008899-72008918 Msa0519740:CDS 40.0%
CCATATACTCCATCACTAGT+AGG - chr3_4:72008911-72008930 None:intergenic 40.0%
! CCTACTAGTGATGGAGTATA+TGG + chr3_4:72008908-72008927 Msa0519740:CDS 40.0%
GATCAAATCCCTATGGTTGT+TGG + chr3_4:72008936-72008955 Msa0519740:CDS 40.0%
CAGCTCCATCAGATGTTTAT+AGG + chr3_4:72008999-72009018 Msa0519740:CDS 40.0%
! GTATATGTAGGTGGTAGTGT+TGG + chr3_4:72009103-72009122 Msa0519740:CDS 40.0%
! AGTGTTGGAATAGTAGGTAG+TGG + chr3_4:72009118-72009137 Msa0519740:CDS 40.0%
ATCCATTGACAATATGAGGC+TGG - chr3_4:72009201-72009220 None:intergenic 40.0%
ACAATCTGCTTTACACCATG+AGG - chr3_4:72009247-72009266 None:intergenic 40.0%
CATGGTGTAAAGCAGATTGT+TGG + chr3_4:72009247-72009266 Msa0519740:CDS 40.0%
!! GTTGGCGCTTCAAGTTTTAA+AGG + chr3_4:72009265-72009284 Msa0519740:CDS 40.0%
!! GAAGCTTTAGGAACAGAGTA+AGG + chr3_4:72007952-72007971 Msa0519740:five_prime_UTR 40.0%
CGTCACCGTATTTGGTAAAA+TGG - chr3_4:72008103-72008122 None:intergenic 40.0%
ATGCAAAACGTCACCGTATT+TGG - chr3_4:72008111-72008130 None:intergenic 40.0%
TAACGAAACCGAAACCTCTA+GGG - chr3_4:72008166-72008185 None:intergenic 40.0%
CCTTTCGTCCAAGAATAAGA+TGG - chr3_4:72008232-72008251 None:intergenic 40.0%
CCATCTTATTCTTGGACGAA+AGG + chr3_4:72008229-72008248 Msa0519740:CDS 40.0%
TGTTGTAGCTGTTCACTTCT+CGG - chr3_4:72008455-72008474 None:intergenic 40.0%
AGCTATAGTGGTTACGAATG+TGG + chr3_4:72008503-72008522 Msa0519740:CDS 40.0%
GCTATAGTGGTTACGAATGT+GGG + chr3_4:72008504-72008523 Msa0519740:CDS 40.0%
TCTTCCACAGACATATTAGC+AGG - chr3_4:72008572-72008591 None:intergenic 40.0%
TGTCTGTGGAAGAGTTTAAG+AGG + chr3_4:72008579-72008598 Msa0519740:CDS 40.0%
!! AAGAGGTACTTTGAGAGGTT+TGG + chr3_4:72008596-72008615 Msa0519740:CDS 40.0%
TGCAGGATAGTGTAACTCAT+AGG + chr3_4:72008642-72008661 Msa0519740:CDS 40.0%
! AGTTTTCACCATTCTAGTCC+AGG + chr3_4:72008851-72008870 Msa0519740:CDS 40.0%
! GTTTTCACCATTCTAGTCCA+GGG + chr3_4:72008852-72008871 Msa0519740:CDS 40.0%
TCACTAGTAGGCAAAGGTAA+AGG - chr3_4:72008899-72008918 None:intergenic 40.0%
TTACCTTTGCCTACTAGTGA+TGG + chr3_4:72008899-72008918 Msa0519740:CDS 40.0%
CCATATACTCCATCACTAGT+AGG - chr3_4:72008911-72008930 None:intergenic 40.0%
! CCTACTAGTGATGGAGTATA+TGG + chr3_4:72008908-72008927 Msa0519740:CDS 40.0%
GATCAAATCCCTATGGTTGT+TGG + chr3_4:72008936-72008955 Msa0519740:CDS 40.0%
CAGCTCCATCAGATGTTTAT+AGG + chr3_4:72008999-72009018 Msa0519740:CDS 40.0%
! GTATATGTAGGTGGTAGTGT+TGG + chr3_4:72009103-72009122 Msa0519740:CDS 40.0%
! AGTGTTGGAATAGTAGGTAG+TGG + chr3_4:72009118-72009137 Msa0519740:CDS 40.0%
ATCCATTGACAATATGAGGC+TGG - chr3_4:72009201-72009220 None:intergenic 40.0%
ACAATCTGCTTTACACCATG+AGG - chr3_4:72009247-72009266 None:intergenic 40.0%
CATGGTGTAAAGCAGATTGT+TGG + chr3_4:72009247-72009266 Msa0519740:CDS 40.0%
!! GTTGGCGCTTCAAGTTTTAA+AGG + chr3_4:72009265-72009284 Msa0519740:CDS 40.0%
GATAAAGCCAAGCTCTTCGT+CGG + chr3_4:72008038-72008057 Msa0519740:CDS 45.0%
! AACCGAAACCTCTAGGGATT+CGG - chr3_4:72008160-72008179 None:intergenic 45.0%
GTAACGAAACCGAAACCTCT+AGG - chr3_4:72008167-72008186 None:intergenic 45.0%
TGGTCGAATAACTGATGTCG+TGG + chr3_4:72008616-72008635 Msa0519740:CDS 45.0%
ATAGTGTAACTCATAGGCCG+AGG + chr3_4:72008648-72008667 Msa0519740:CDS 45.0%
TAGTGTAACTCATAGGCCGA+GGG + chr3_4:72008649-72008668 Msa0519740:CDS 45.0%
GTAATAAACCCAAACCCCCT+CGG - chr3_4:72008668-72008687 None:intergenic 45.0%
TCATGACTTGAATGGTAGGC+AGG + chr3_4:72008733-72008752 Msa0519740:CDS 45.0%
!! GAGGGGAATGTTGATTCTGA+GGG + chr3_4:72008782-72008801 Msa0519740:CDS 45.0%
! ACATGTTCCCTGGACTAGAA+TGG - chr3_4:72008862-72008881 None:intergenic 45.0%
ACTCCATCACTAGTAGGCAA+AGG - chr3_4:72008905-72008924 None:intergenic 45.0%
GGATACGGATCAAATCCCTA+TGG + chr3_4:72008929-72008948 Msa0519740:CDS 45.0%
! GTAGGGTACCAACAACCATA+GGG - chr3_4:72008947-72008966 None:intergenic 45.0%
CTATGGTTGTTGGTACCCTA+CGG + chr3_4:72008946-72008965 Msa0519740:CDS 45.0%
TATGGTTGTTGGTACCCTAC+GGG + chr3_4:72008947-72008966 Msa0519740:CDS 45.0%
!! CTTATGGTATGGTGGGCAAA+TGG + chr3_4:72009024-72009043 Msa0519740:CDS 45.0%
!! TATGGTGGGCAAATGGTAAC+TGG + chr3_4:72009031-72009050 Msa0519740:CDS 45.0%
! GGTGGTAGTGTTGGAATAGT+AGG + chr3_4:72009112-72009131 Msa0519740:CDS 45.0%
GGAATTGTACCCCCAATTTC+CGG - chr3_4:72009146-72009165 None:intergenic 45.0%
! TGGGGGTACAATTCCATTCT+TGG + chr3_4:72009151-72009170 Msa0519740:CDS 45.0%
! GGGGGTACAATTCCATTCTT+GGG + chr3_4:72009152-72009171 Msa0519740:CDS 45.0%
GACCAGCCTCATATTGTCAA+TGG + chr3_4:72009196-72009215 Msa0519740:CDS 45.0%
TGAGGCGATGGCATATTGAA+TGG - chr3_4:72009229-72009248 None:intergenic 45.0%
TTCAATATGCCATCGCCTCA+TGG + chr3_4:72009229-72009248 Msa0519740:CDS 45.0%
GATAAAGCCAAGCTCTTCGT+CGG + chr3_4:72008038-72008057 Msa0519740:CDS 45.0%
! AACCGAAACCTCTAGGGATT+CGG - chr3_4:72008160-72008179 None:intergenic 45.0%
GTAACGAAACCGAAACCTCT+AGG - chr3_4:72008167-72008186 None:intergenic 45.0%
TGGTCGAATAACTGATGTCG+TGG + chr3_4:72008616-72008635 Msa0519740:CDS 45.0%
ATAGTGTAACTCATAGGCCG+AGG + chr3_4:72008648-72008667 Msa0519740:CDS 45.0%
TAGTGTAACTCATAGGCCGA+GGG + chr3_4:72008649-72008668 Msa0519740:CDS 45.0%
GTAATAAACCCAAACCCCCT+CGG - chr3_4:72008668-72008687 None:intergenic 45.0%
TCATGACTTGAATGGTAGGC+AGG + chr3_4:72008733-72008752 Msa0519740:CDS 45.0%
!! GAGGGGAATGTTGATTCTGA+GGG + chr3_4:72008782-72008801 Msa0519740:CDS 45.0%
! ACATGTTCCCTGGACTAGAA+TGG - chr3_4:72008862-72008881 None:intergenic 45.0%
ACTCCATCACTAGTAGGCAA+AGG - chr3_4:72008905-72008924 None:intergenic 45.0%
GGATACGGATCAAATCCCTA+TGG + chr3_4:72008929-72008948 Msa0519740:CDS 45.0%
! GTAGGGTACCAACAACCATA+GGG - chr3_4:72008947-72008966 None:intergenic 45.0%
CTATGGTTGTTGGTACCCTA+CGG + chr3_4:72008946-72008965 Msa0519740:CDS 45.0%
TATGGTTGTTGGTACCCTAC+GGG + chr3_4:72008947-72008966 Msa0519740:CDS 45.0%
!! CTTATGGTATGGTGGGCAAA+TGG + chr3_4:72009024-72009043 Msa0519740:CDS 45.0%
!! TATGGTGGGCAAATGGTAAC+TGG + chr3_4:72009031-72009050 Msa0519740:CDS 45.0%
! GGTGGTAGTGTTGGAATAGT+AGG + chr3_4:72009112-72009131 Msa0519740:CDS 45.0%
GGAATTGTACCCCCAATTTC+CGG - chr3_4:72009146-72009165 None:intergenic 45.0%
! TGGGGGTACAATTCCATTCT+TGG + chr3_4:72009151-72009170 Msa0519740:CDS 45.0%
! GGGGGTACAATTCCATTCTT+GGG + chr3_4:72009152-72009171 Msa0519740:CDS 45.0%
GACCAGCCTCATATTGTCAA+TGG + chr3_4:72009196-72009215 Msa0519740:CDS 45.0%
TGAGGCGATGGCATATTGAA+TGG - chr3_4:72009229-72009248 None:intergenic 45.0%
TTCAATATGCCATCGCCTCA+TGG + chr3_4:72009229-72009248 Msa0519740:CDS 45.0%
ACCCGAATCCCTAGAGGTTT+CGG + chr3_4:72008155-72008174 Msa0519740:CDS 50.0%
! ACCGAAACCTCTAGGGATTC+GGG - chr3_4:72008159-72008178 None:intergenic 50.0%
AGAGGGGCGAATAGCTATAG+TGG + chr3_4:72008491-72008510 Msa0519740:CDS 50.0%
! AACTGATGTCGTGGTGATGC+AGG + chr3_4:72008625-72008644 Msa0519740:CDS 50.0%
AGTGTAACTCATAGGCCGAG+GGG + chr3_4:72008650-72008669 Msa0519740:CDS 50.0%
TGACTTGAATGGTAGGCAGG+TGG + chr3_4:72008736-72008755 Msa0519740:CDS 50.0%
TAGGCAGGTGGAGGTTAAGA+GGG + chr3_4:72008748-72008767 Msa0519740:CDS 50.0%
GAATCAACATTCCCCTCCCT+CGG - chr3_4:72008779-72008798 None:intergenic 50.0%
!! GGAGGGGAATGTTGATTCTG+AGG + chr3_4:72008781-72008800 Msa0519740:CDS 50.0%
ATGGCAGGAAACATGTTCCC+TGG - chr3_4:72008872-72008891 None:intergenic 50.0%
AGGGAACATGTTTCCTGCCA+TGG + chr3_4:72008871-72008890 Msa0519740:CDS 50.0%
AAAGGTAAAGGAGCCATGGC+AGG - chr3_4:72008887-72008906 None:intergenic 50.0%
AGGCAAAGGTAAAGGAGCCA+TGG - chr3_4:72008891-72008910 None:intergenic 50.0%
! CGTAGGGTACCAACAACCAT+AGG - chr3_4:72008948-72008967 None:intergenic 50.0%
GCAAATGGTAACTGGTCCTC+AGG + chr3_4:72009039-72009058 Msa0519740:CDS 50.0%
TGGTCCTCAGGCTTATCATC+AGG + chr3_4:72009051-72009070 Msa0519740:CDS 50.0%
! GGAATAGTAGGTAGTGGTGC+CGG + chr3_4:72009124-72009143 Msa0519740:CDS 50.0%
! TAGGTAGTGGTGCCGGAAAT+TGG + chr3_4:72009131-72009150 Msa0519740:CDS 50.0%
! AGGTAGTGGTGCCGGAAATT+GGG + chr3_4:72009132-72009151 Msa0519740:CDS 50.0%
TGCTTTACACCATGAGGCGA+TGG - chr3_4:72009241-72009260 None:intergenic 50.0%
ACCCGAATCCCTAGAGGTTT+CGG + chr3_4:72008155-72008174 Msa0519740:CDS 50.0%
! ACCGAAACCTCTAGGGATTC+GGG - chr3_4:72008159-72008178 None:intergenic 50.0%
AGAGGGGCGAATAGCTATAG+TGG + chr3_4:72008491-72008510 Msa0519740:CDS 50.0%
! AACTGATGTCGTGGTGATGC+AGG + chr3_4:72008625-72008644 Msa0519740:CDS 50.0%
AGTGTAACTCATAGGCCGAG+GGG + chr3_4:72008650-72008669 Msa0519740:CDS 50.0%
TGACTTGAATGGTAGGCAGG+TGG + chr3_4:72008736-72008755 Msa0519740:CDS 50.0%
TAGGCAGGTGGAGGTTAAGA+GGG + chr3_4:72008748-72008767 Msa0519740:CDS 50.0%
GAATCAACATTCCCCTCCCT+CGG - chr3_4:72008779-72008798 None:intergenic 50.0%
!! GGAGGGGAATGTTGATTCTG+AGG + chr3_4:72008781-72008800 Msa0519740:CDS 50.0%
ATGGCAGGAAACATGTTCCC+TGG - chr3_4:72008872-72008891 None:intergenic 50.0%
AGGGAACATGTTTCCTGCCA+TGG + chr3_4:72008871-72008890 Msa0519740:CDS 50.0%
AAAGGTAAAGGAGCCATGGC+AGG - chr3_4:72008887-72008906 None:intergenic 50.0%
AGGCAAAGGTAAAGGAGCCA+TGG - chr3_4:72008891-72008910 None:intergenic 50.0%
! CGTAGGGTACCAACAACCAT+AGG - chr3_4:72008948-72008967 None:intergenic 50.0%
GCAAATGGTAACTGGTCCTC+AGG + chr3_4:72009039-72009058 Msa0519740:CDS 50.0%
TGGTCCTCAGGCTTATCATC+AGG + chr3_4:72009051-72009070 Msa0519740:CDS 50.0%
! GGAATAGTAGGTAGTGGTGC+CGG + chr3_4:72009124-72009143 Msa0519740:CDS 50.0%
! TAGGTAGTGGTGCCGGAAAT+TGG + chr3_4:72009131-72009150 Msa0519740:CDS 50.0%
! AGGTAGTGGTGCCGGAAATT+GGG + chr3_4:72009132-72009151 Msa0519740:CDS 50.0%
TGCTTTACACCATGAGGCGA+TGG - chr3_4:72009241-72009260 None:intergenic 50.0%
AAAGCCAAGCTCTTCGTCGG+TGG + chr3_4:72008041-72008060 Msa0519740:CDS 55.0%
AATGCCACCGACGAAGAGCT+TGG - chr3_4:72008048-72008067 None:intergenic 55.0%
! GAAACCTCTAGGGATTCGGG+TGG - chr3_4:72008156-72008175 None:intergenic 55.0%
GTGTAACTCATAGGCCGAGG+GGG + chr3_4:72008651-72008670 Msa0519740:CDS 55.0%
CTTGAATGGTAGGCAGGTGG+AGG + chr3_4:72008739-72008758 Msa0519740:CDS 55.0%
GTAGGCAGGTGGAGGTTAAG+AGG + chr3_4:72008747-72008766 Msa0519740:CDS 55.0%
AGGTTAAGAGGGCAGTTCCG+AGG + chr3_4:72008759-72008778 Msa0519740:CDS 55.0%
GGTTAAGAGGGCAGTTCCGA+GGG + chr3_4:72008760-72008779 Msa0519740:CDS 55.0%
GTTGTTGGTACCCTACGGGT+GGG + chr3_4:72008951-72008970 Msa0519740:CDS 55.0%
CATACCCATACCCACCCGTA+GGG - chr3_4:72008964-72008983 None:intergenic 55.0%
CTACGGGTGGGTATGGGTAT+GGG + chr3_4:72008963-72008982 Msa0519740:CDS 55.0%
TACGGGTGGGTATGGGTATG+GGG + chr3_4:72008964-72008983 Msa0519740:CDS 55.0%
GGCACCTGATGATAAGCCTG+AGG - chr3_4:72009058-72009077 None:intergenic 55.0%
! GGTAGTGGTGCCGGAAATTG+GGG + chr3_4:72009133-72009152 Msa0519740:CDS 55.0%
! GTAGTGGTGCCGGAAATTGG+GGG + chr3_4:72009134-72009153 Msa0519740:CDS 55.0%
AAAGCCAAGCTCTTCGTCGG+TGG + chr3_4:72008041-72008060 Msa0519740:CDS 55.0%
AATGCCACCGACGAAGAGCT+TGG - chr3_4:72008048-72008067 None:intergenic 55.0%
! GAAACCTCTAGGGATTCGGG+TGG - chr3_4:72008156-72008175 None:intergenic 55.0%
GTGTAACTCATAGGCCGAGG+GGG + chr3_4:72008651-72008670 Msa0519740:CDS 55.0%
CTTGAATGGTAGGCAGGTGG+AGG + chr3_4:72008739-72008758 Msa0519740:CDS 55.0%
GTAGGCAGGTGGAGGTTAAG+AGG + chr3_4:72008747-72008766 Msa0519740:CDS 55.0%
AGGTTAAGAGGGCAGTTCCG+AGG + chr3_4:72008759-72008778 Msa0519740:CDS 55.0%
GGTTAAGAGGGCAGTTCCGA+GGG + chr3_4:72008760-72008779 Msa0519740:CDS 55.0%
GTTGTTGGTACCCTACGGGT+GGG + chr3_4:72008951-72008970 Msa0519740:CDS 55.0%
CATACCCATACCCACCCGTA+GGG - chr3_4:72008964-72008983 None:intergenic 55.0%
CTACGGGTGGGTATGGGTAT+GGG + chr3_4:72008963-72008982 Msa0519740:CDS 55.0%
TACGGGTGGGTATGGGTATG+GGG + chr3_4:72008964-72008983 Msa0519740:CDS 55.0%
GGCACCTGATGATAAGCCTG+AGG - chr3_4:72009058-72009077 None:intergenic 55.0%
! GGTAGTGGTGCCGGAAATTG+GGG + chr3_4:72009133-72009152 Msa0519740:CDS 55.0%
! GTAGTGGTGCCGGAAATTGG+GGG + chr3_4:72009134-72009153 Msa0519740:CDS 55.0%
! CTCTAGGGATTCGGGTGGTG+CGG - chr3_4:72008151-72008170 None:intergenic 60.0%
ACTCATAGGCCGAGGGGGTT+TGG + chr3_4:72008656-72008675 Msa0519740:CDS 60.0%
CTCATAGGCCGAGGGGGTTT+GGG + chr3_4:72008657-72008676 Msa0519740:CDS 60.0%
TAAGAGGGCAGTTCCGAGGG+AGG + chr3_4:72008763-72008782 Msa0519740:CDS 60.0%
AAGAGGGCAGTTCCGAGGGA+GGG + chr3_4:72008764-72008783 Msa0519740:CDS 60.0%
GGTTGTTGGTACCCTACGGG+TGG + chr3_4:72008950-72008969 Msa0519740:CDS 60.0%
TGGTACCCTACGGGTGGGTA+TGG + chr3_4:72008956-72008975 Msa0519740:CDS 60.0%
GGTACCCTACGGGTGGGTAT+GGG + chr3_4:72008957-72008976 Msa0519740:CDS 60.0%
CCATACCCATACCCACCCGT+AGG - chr3_4:72008965-72008984 None:intergenic 60.0%
CCTACGGGTGGGTATGGGTA+TGG + chr3_4:72008962-72008981 Msa0519740:CDS 60.0%
ACGGGTGGGTATGGGTATGG+GGG + chr3_4:72008965-72008984 Msa0519740:CDS 60.0%
GGGTATGGGTATGGGGGGAA+TGG + chr3_4:72008971-72008990 Msa0519740:CDS 60.0%
! CTCTAGGGATTCGGGTGGTG+CGG - chr3_4:72008151-72008170 None:intergenic 60.0%
ACTCATAGGCCGAGGGGGTT+TGG + chr3_4:72008656-72008675 Msa0519740:CDS 60.0%
CTCATAGGCCGAGGGGGTTT+GGG + chr3_4:72008657-72008676 Msa0519740:CDS 60.0%
TAAGAGGGCAGTTCCGAGGG+AGG + chr3_4:72008763-72008782 Msa0519740:CDS 60.0%
AAGAGGGCAGTTCCGAGGGA+GGG + chr3_4:72008764-72008783 Msa0519740:CDS 60.0%
GGTTGTTGGTACCCTACGGG+TGG + chr3_4:72008950-72008969 Msa0519740:CDS 60.0%
TGGTACCCTACGGGTGGGTA+TGG + chr3_4:72008956-72008975 Msa0519740:CDS 60.0%
GGTACCCTACGGGTGGGTAT+GGG + chr3_4:72008957-72008976 Msa0519740:CDS 60.0%
CCATACCCATACCCACCCGT+AGG - chr3_4:72008965-72008984 None:intergenic 60.0%
CCTACGGGTGGGTATGGGTA+TGG + chr3_4:72008962-72008981 Msa0519740:CDS 60.0%
ACGGGTGGGTATGGGTATGG+GGG + chr3_4:72008965-72008984 Msa0519740:CDS 60.0%
GGGTATGGGTATGGGGGGAA+TGG + chr3_4:72008971-72008990 Msa0519740:CDS 60.0%
CGCACCACCCGAATCCCTAG+AGG + chr3_4:72008149-72008168 Msa0519740:CDS 65.0%
AGAGGGCAGTTCCGAGGGAG+GGG + chr3_4:72008765-72008784 Msa0519740:CDS 65.0%
CGGGTGGGTATGGGTATGGG+GGG + chr3_4:72008966-72008985 Msa0519740:CDS 65.0%
CGCACCACCCGAATCCCTAG+AGG + chr3_4:72008149-72008168 Msa0519740:CDS 65.0%
AGAGGGCAGTTCCGAGGGAG+GGG + chr3_4:72008765-72008784 Msa0519740:CDS 65.0%
CGGGTGGGTATGGGTATGGG+GGG + chr3_4:72008966-72008985 Msa0519740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72007932 72009312 72007932 ID=Msa0519740;Name=Msa0519740
chr3_4 mRNA 72007932 72009312 72007932 ID=Msa0519740-mRNA-1;Parent=Msa0519740;Name=Msa0519740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|0.5|1|1|1|2|0|371
chr3_4 exon 72007932 72008250 72007932 ID=Msa0519740-mRNA-1:exon:19796;Parent=Msa0519740-mRNA-1
chr3_4 exon 72008431 72009312 72008431 ID=Msa0519740-mRNA-1:exon:19797;Parent=Msa0519740-mRNA-1
chr3_4 five_prime_UTR 72007932 72008016 72007932 ID=Msa0519740-mRNA-1:five_prime_utr;Parent=Msa0519740-mRNA-1
chr3_4 CDS 72008017 72008250 72008017 ID=Msa0519740-mRNA-1:cds;Parent=Msa0519740-mRNA-1
chr3_4 CDS 72008431 72009312 72008431 ID=Msa0519740-mRNA-1:cds;Parent=Msa0519740-mRNA-1
Gene Sequence

>Msa0519740

ATGAATTTCAAAATGGATTCTGATAAAGCCAAGCTCTTCGTCGGTGGCATTTCTCGCGAAACTACTGAAGACACTCTCAAACACCATTTTACCAAATACGGTGACGTTTTGCATTCAACAATCTCTTTTGACCGCACCACCCGAATCCCTAGAGGTTTCGGTTTCGTTACTTTCTCTGATATCTCTTCTGCTCACAATGCCCTTCAAGATACCCATCTTATTCTTGGACGAAAGGTAGAAGTTAGGAAAGCAATTCCGAGAAGTGAACAGCTACAACAAAATCAATTACAGAATAGAGGGGCGAATAGCTATAGTGGTTACGAATGTGGGAATGAACATATTAGGACTAAGAAGATTTTTGTTGGTGGTTTACCTGCTAATATGTCTGTGGAAGAGTTTAAGAGGTACTTTGAGAGGTTTGGTCGAATAACTGATGTCGTGGTGATGCAGGATAGTGTAACTCATAGGCCGAGGGGGTTTGGGTTTATTACTTTTGATTCTGAAGACTCGGTGCAAAGTGTTATGATGACAAGTTTTCATGACTTGAATGGTAGGCAGGTGGAGGTTAAGAGGGCAGTTCCGAGGGAGGGGAATGTTGATTCTGAGGGTTTTAGTAAAATAAGATATAAGAGTGATAGAGGAGCGGCAGCTGAAAGTTTTCACCATTCTAGTCCAGGGAACATGTTTCCTGCCATGGCTCCTTTACCTTTGCCTACTAGTGATGGAGTATATGGATACGGATCAAATCCCTATGGTTGTTGGTACCCTACGGGTGGGTATGGGTATGGGGGGAATGGATATGCAGCTCCATCAGATGTTTATAGGAACTTATGGTATGGTGGGCAAATGGTAACTGGTCCTCAGGCTTATCATCAGGTGCCTTACGCTAATGTTATGTCAAGTGTTGTATATGTAGGTGGTAGTGTTGGAATAGTAGGTAGTGGTGCCGGAAATTGGGGGTACAATTCCATTCTTGGGTCTGTAACAAATTATAAATTTGACCAGCCTCATATTGTCAATGGATTTGTTCCATTCAATATGCCATCGCCTCATGGTGTAAAGCAGATTGTTGGCGCTTCAAGTTTTAAAGGAAGCAATGGTGAAATCTCCAGTTGA

Protein sequence

>Msa0519740

MNFKMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHLILGRKVEVRKAIPRSEQLQQNQLQNRGANSYSGYECGNEHIRTKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEDSVQSVMMTSFHDLNGRQVEVKRAVPREGNVDSEGFSKIRYKSDRGAAAESFHHSSPGNMFPAMAPLPLPTSDGVYGYGSNPYGCWYPTGGYGYGGNGYAAPSDVYRNLWYGGQMVTGPQAYHQVPYANVMSSVVYVGGSVGIVGSGAGNWGYNSILGSVTNYKFDQPHIVNGFVPFNMPSPHGVKQIVGASSFKGSNGEISS*