Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0750540 | XP_039690448.1 | 99.136 | 463 | 4 | 0 | 1 | 463 | 1 | 463 | 0.0 | 953 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0750540 | sp|Q54PW5|DPH1_DICDI | 46.117 | 412 | 175 | 6 | 30 | 438 | 102 | 469 | 1.44e-135 | 401 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0750540 | G7K6J3 | 99.136 | 463 | 4 | 0 | 1 | 463 | 1 | 463 | 0.0 | 953 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008410 | Msa0750540 | 0.829063 | 6.348684e-55 | -8.615850e-47 |
Msa0029260 | Msa0750540 | 0.804067 | 2.581192e-49 | -8.615850e-47 |
Msa0029630 | Msa0750540 | 0.830718 | 2.508108e-55 | -8.615850e-47 |
Msa0033880 | Msa0750540 | 0.820363 | 7.135945e-53 | -8.615850e-47 |
Msa0047980 | Msa0750540 | 0.803618 | 3.199591e-49 | -8.615850e-47 |
Msa0057140 | Msa0750540 | 0.813602 | 2.355949e-51 | -8.615850e-47 |
Msa0064350 | Msa0750540 | 0.802335 | 5.891303e-49 | -8.615850e-47 |
Msa0077900 | Msa0750540 | 0.823705 | 1.199380e-53 | -8.615850e-47 |
Msa0079920 | Msa0750540 | 0.827262 | 1.724291e-54 | -8.615850e-47 |
Msa0115990 | Msa0750540 | 0.806233 | 9.084328e-50 | -8.615850e-47 |
Msa0606810 | Msa0750540 | 0.800879 | 1.171364e-48 | -8.615850e-47 |
Msa0610390 | Msa0750540 | 0.819389 | 1.191687e-52 | -8.615850e-47 |
Msa0614510 | Msa0750540 | 0.819954 | 8.854841e-53 | -8.615850e-47 |
Msa0617260 | Msa0750540 | 0.807537 | 4.816037e-50 | -8.615850e-47 |
Msa0630950 | Msa0750540 | 0.806691 | 7.272710e-50 | -8.615850e-47 |
Msa0650920 | Msa0750540 | 0.814739 | 1.321192e-51 | -8.615850e-47 |
Msa0662630 | Msa0750540 | 0.801422 | 9.071449e-49 | -8.615850e-47 |
Msa0663900 | Msa0750540 | 0.802505 | 5.433758e-49 | -8.615850e-47 |
Msa0687630 | Msa0750540 | 0.805381 | 1.372220e-49 | -8.615850e-47 |
Msa0692840 | Msa0750540 | 0.824039 | 1.001469e-53 | -8.615850e-47 |
Msa0692940 | Msa0750540 | 0.822234 | 2.642155e-53 | -8.615850e-47 |
Msa0718740 | Msa0750540 | 0.803473 | 3.428276e-49 | -8.615850e-47 |
Msa0726830 | Msa0750540 | 0.808686 | 2.741583e-50 | -8.615850e-47 |
Msa0726860 | Msa0750540 | 0.809974 | 1.451345e-50 | -8.615850e-47 |
Msa0734960 | Msa0750540 | 0.817595 | 3.039260e-52 | -8.615850e-47 |
Msa0743530 | Msa0750540 | 0.808079 | 3.692939e-50 | -8.615850e-47 |
Msa0750540 | Msa0752700 | 0.802097 | 6.592934e-49 | -8.615850e-47 |
Msa0750540 | Msa0805500 | 0.800754 | 1.242651e-48 | -8.615850e-47 |
Msa0750540 | Msa0814250 | 0.811651 | 6.292905e-51 | -8.615850e-47 |
Msa0750540 | Msa0822170 | 0.822241 | 2.632367e-53 | -8.615850e-47 |
Msa0750540 | Msa0822180 | 0.817001 | 4.135724e-52 | -8.615850e-47 |
Msa0750540 | Msa0825270 | 0.804720 | 1.886290e-49 | -8.615850e-47 |
Msa0750540 | Msa0842830 | 0.805826 | 1.106861e-49 | -8.615850e-47 |
Msa0750540 | Msa0858440 | 0.808684 | 2.743631e-50 | -8.615850e-47 |
Msa0750540 | Msa0932570 | 0.801765 | 7.714890e-49 | -8.615850e-47 |
Msa0750540 | Msa0943170 | 0.803972 | 2.700962e-49 | -8.615850e-47 |
Msa0750540 | Msa0967370 | 0.817260 | 3.616972e-52 | -8.615850e-47 |
Msa0750540 | Msa0970600 | 0.816927 | 4.295394e-52 | -8.615850e-47 |
Msa0750540 | Msa0976330 | 0.801441 | 8.991668e-49 | -8.615850e-47 |
Msa0750540 | Msa0980940 | 0.810278 | 1.247724e-50 | -8.615850e-47 |
Msa0750540 | Msa1025940 | 0.813816 | 2.112965e-51 | -8.615850e-47 |
Msa0750540 | Msa1100720 | 0.817597 | 3.036701e-52 | -8.615850e-47 |
Msa0750540 | Msa1125470 | 0.808878 | 2.494793e-50 | -8.615850e-47 |
Msa0750540 | Msa1125550 | 0.800536 | 1.376580e-48 | -8.615850e-47 |
Msa0750540 | Msa1126830 | 0.804097 | 2.543985e-49 | -8.615850e-47 |
Msa0750540 | Msa1160360 | 0.801670 | 8.070468e-49 | -8.615850e-47 |
Msa0750540 | Msa1184370 | 0.806445 | 8.196913e-50 | -8.615850e-47 |
Msa0750540 | Msa1192850 | 0.824436 | 8.079116e-54 | -8.615850e-47 |
Msa0750540 | Msa1201830 | 0.816355 | 5.770687e-52 | -8.615850e-47 |
Msa0750540 | Msa1206650 | 0.817658 | 2.942563e-52 | -8.615850e-47 |
Msa0750540 | Msa1227690 | 0.815971 | 7.033790e-52 | -8.615850e-47 |
Msa0750540 | Msa1254510 | 0.808828 | 2.556871e-50 | -8.615850e-47 |
Msa0750540 | Msa1254710 | 0.804841 | 1.779700e-49 | -8.615850e-47 |
Msa0750540 | Msa1256470 | 0.807245 | 5.555193e-50 | -8.615850e-47 |
Msa0750540 | Msa1294840 | 0.811355 | 7.296295e-51 | -8.615850e-47 |
Msa0750540 | Msa1327490 | 0.821834 | 3.270979e-53 | -8.615850e-47 |
Msa0750540 | Msa1335940 | 0.803978 | 2.693610e-49 | -8.615850e-47 |
Msa0750540 | Msa1343290 | 0.800668 | 1.293971e-48 | -8.615850e-47 |
Msa0750540 | Msa1344850 | 0.819667 | 1.029781e-52 | -8.615850e-47 |
Msa0750540 | Msa1345450 | 0.817131 | 3.865167e-52 | -8.615850e-47 |
Msa0750540 | Msa1355700 | 0.800857 | 1.183747e-48 | -8.615850e-47 |
Msa0750540 | Msa1356610 | 0.814897 | 1.219128e-51 | -8.615850e-47 |
Msa0750540 | Msa1357190 | 0.802410 | 5.685183e-49 | -8.615850e-47 |
Msa0750540 | Msa1367590 | 0.808698 | 2.725786e-50 | -8.615850e-47 |
Msa0750540 | Msa1370860 | 0.804392 | 2.208552e-49 | -8.615850e-47 |
Msa0750540 | Msa1377800 | 0.812628 | 3.851872e-51 | -8.615850e-47 |
Msa0750540 | Msa1381780 | 0.804763 | 1.848302e-49 | -8.615850e-47 |
Msa0750540 | Msa1382780 | 0.834209 | 3.420908e-56 | -8.615850e-47 |
Msa0750540 | Msa1387190 | 0.804860 | 1.764090e-49 | -8.615850e-47 |
Msa0750540 | Msa1396940 | 0.808311 | 3.296110e-50 | -8.615850e-47 |
Msa0750540 | Msa1397940 | 0.822076 | 2.874778e-53 | -8.615850e-47 |
Msa0750540 | Msa1404190 | 0.814232 | 1.710896e-51 | -8.615850e-47 |
Msa0750540 | Msa1438640 | 0.801728 | 7.852720e-49 | -8.615850e-47 |
Msa0750540 | Msa1458810 | 0.829020 | 6.502648e-55 | -8.615850e-47 |
Msa0750540 | Msa1459960 | 0.817673 | 2.918248e-52 | -8.615850e-47 |
Msa0125450 | Msa0750540 | 0.825827 | 3.791579e-54 | -8.615850e-47 |
Msa0125540 | Msa0750540 | 0.822112 | 2.818911e-53 | -8.615850e-47 |
Msa0127040 | Msa0750540 | 0.812676 | 3.761053e-51 | -8.615850e-47 |
Msa0127850 | Msa0750540 | 0.823352 | 1.451061e-53 | -8.615850e-47 |
Msa0157100 | Msa0750540 | 0.806407 | 8.352340e-50 | -8.615850e-47 |
Msa0165950 | Msa0750540 | 0.804934 | 1.702005e-49 | -8.615850e-47 |
Msa0169300 | Msa0750540 | 0.802654 | 5.063764e-49 | -8.615850e-47 |
Msa0174000 | Msa0750540 | 0.824447 | 8.031036e-54 | -8.615850e-47 |
Msa0174770 | Msa0750540 | 0.808246 | 3.402955e-50 | -8.615850e-47 |
Msa0199690 | Msa0750540 | 0.826811 | 2.209647e-54 | -8.615850e-47 |
Msa0225180 | Msa0750540 | 0.803413 | 3.527923e-49 | -8.615850e-47 |
Msa0419520 | Msa0750540 | 0.814564 | 1.444709e-51 | -8.615850e-47 |
Msa0439890 | Msa0750540 | 0.802063 | 6.702261e-49 | -8.615850e-47 |
Msa0449820 | Msa0750540 | 0.817033 | 4.067394e-52 | -8.615850e-47 |
Msa0465550 | Msa0750540 | 0.808947 | 2.411464e-50 | -8.615850e-47 |
Msa0471590 | Msa0750540 | 0.805410 | 1.353115e-49 | -8.615850e-47 |
Msa0478580 | Msa0750540 | 0.804363 | 2.238940e-49 | -8.615850e-47 |
Msa0481480 | Msa0750540 | 0.812176 | 4.835598e-51 | -8.615850e-47 |
Msa0244980 | Msa0750540 | 0.801611 | 8.297473e-49 | -8.615850e-47 |
Msa0245430 | Msa0750540 | 0.802511 | 5.418857e-49 | -8.615850e-47 |
Msa0267870 | Msa0750540 | 0.812838 | 3.465601e-51 | -8.615850e-47 |
Msa0280430 | Msa0750540 | 0.819014 | 1.450483e-52 | -8.615850e-47 |
Msa0284820 | Msa0750540 | 0.810064 | 1.388048e-50 | -8.615850e-47 |
Msa0291520 | Msa0750540 | 0.801561 | 8.497785e-49 | -8.615850e-47 |
Msa0300120 | Msa0750540 | 0.820746 | 5.826879e-53 | -8.615850e-47 |
Msa0315850 | Msa0750540 | 0.813967 | 1.957138e-51 | -8.615850e-47 |
Msa0327410 | Msa0750540 | 0.816782 | 4.630207e-52 | -8.615850e-47 |
Msa0493920 | Msa0750540 | 0.800752 | 1.243685e-48 | -8.615850e-47 |
Msa0552810 | Msa0750540 | 0.820825 | 5.590404e-53 | -8.615850e-47 |
Msa0565620 | Msa0750540 | -0.813102 | 3.034266e-51 | -8.615850e-47 |
Msa0581070 | Msa0750540 | 0.810024 | 1.415975e-50 | -8.615850e-47 |
Msa0581110 | Msa0750540 | 0.803724 | 3.040505e-49 | -8.615850e-47 |
Msa0590650 | Msa0750540 | 0.809028 | 2.316939e-50 | -8.615850e-47 |
Msa0600610 | Msa0750540 | 0.808794 | 2.599824e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0750540 | MtrunA17_Chr5g0395801 | 99.136 | 463 | 4 | 0 | 1 | 463 | 1 | 463 | 0.0 | 953 |
Msa0750540 | MtrunA17_Chr1g0147211 | 24.064 | 374 | 222 | 10 | 64 | 383 | 16 | 381 | 2.93e-19 | 90.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0750540 | AT5G62030.1 | 71.205 | 448 | 114 | 6 | 10 | 450 | 6 | 445 | 0.0 | 641 |
Msa0750540 | AT3G59630.1 | 24.057 | 424 | 255 | 12 | 55 | 432 | 9 | 411 | 6.60e-24 | 104 |
Msa0750540 | AT3G59630.2 | 24.057 | 424 | 255 | 12 | 55 | 432 | 9 | 411 | 6.60e-24 | 104 |
Find 119 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTAAGGATTTAGGGTTTA+TGG | 0.120386 | 5_2:+3983244 | Msa0750540:CDS |
GGGACTATTCAGTTTGCTTC+TGG | 0.141078 | 5_2:+3983287 | Msa0750540:CDS |
AAGTTGAATTCTAAGGATTT+AGG | 0.180160 | 5_2:+3983236 | Msa0750540:CDS |
ACAAGGGAATCCTAAGATTT+TGG | 0.190611 | 5_2:+3983658 | Msa0750540:CDS |
GCTGAGATTCTTATTCATTA+TGG | 0.202025 | 5_2:+3983116 | Msa0750540:CDS |
GAAATTAGGGTTTAGGGTTT+TGG | 0.208843 | 5_2:+3983337 | Msa0750540:CDS |
GGAGAGATTGGAAATGAAAA+TGG | 0.217434 | 5_2:+3983679 | Msa0750540:CDS |
TTCAGTTTGCTTCTGGGATT+AGG | 0.232646 | 5_2:+3983294 | Msa0750540:CDS |
AACCCTAATTTCTCCAATTC+AGG | 0.233092 | 5_2:-3983326 | None:intergenic |
AAGCCTGAATTGGAGAAATT+AGG | 0.233864 | 5_2:+3983323 | Msa0750540:CDS |
ATTTAGGGTTTATGGGTAAA+AGG | 0.253235 | 5_2:+3983252 | Msa0750540:CDS |
TCCAATCTCTCCAAAATCTT+AGG | 0.253400 | 5_2:-3983668 | None:intergenic |
AATTGGAGAAATTAGGGTTT+AGG | 0.261421 | 5_2:+3983330 | Msa0750540:CDS |
GCCAAGGCGACTGAAGATTT+TGG | 0.283970 | 5_2:+3983989 | Msa0750540:CDS |
TCAGTTTGCTTCTGGGATTA+GGG | 0.286217 | 5_2:+3983295 | Msa0750540:CDS |
TCCTAGACTCTCTATTGATT+GGG | 0.286257 | 5_2:+3983805 | Msa0750540:CDS |
ATTGGAGAAATTAGGGTTTA+GGG | 0.295088 | 5_2:+3983331 | Msa0750540:CDS |
TCAAACAAAGAGATTCTATA+AGG | 0.295399 | 5_2:-3983749 | None:intergenic |
AGTTGAATTCTAAGGATTTA+GGG | 0.301959 | 5_2:+3983237 | Msa0750540:CDS |
TACTGTTAAGTTGAATTCTA+AGG | 0.302039 | 5_2:+3983229 | Msa0750540:CDS |
GATAGCGAATCCGGGGATTA+AGG | 0.306937 | 5_2:+3983496 | Msa0750540:CDS |
AGCCTGAATTGGAGAAATTA+GGG | 0.313853 | 5_2:+3983324 | Msa0750540:CDS |
GGACTATTCAGTTTGCTTCT+GGG | 0.318873 | 5_2:+3983288 | Msa0750540:CDS |
GAGTACATGAGAAGACCTTC+AGG | 0.320308 | 5_2:-3982978 | None:intergenic |
TCTAAGGATTTAGGGTTTAT+GGG | 0.324406 | 5_2:+3983245 | Msa0750540:CDS |
GTCCTAGACTCTCTATTGAT+TGG | 0.343341 | 5_2:+3983804 | Msa0750540:CDS |
GGTAAAAGGGTTATTCTTGC+TGG | 0.344947 | 5_2:+3983266 | Msa0750540:CDS |
TGAGGATTGAATCTGGGATT+TGG | 0.359458 | 5_2:-3982839 | None:intergenic |
AAGCGAAGGAGGCGAGGAAT+TGG | 0.363100 | 5_2:+3983609 | Msa0750540:CDS |
CAAGGTTGTGAAGATGTTAC+AGG | 0.372583 | 5_2:+3983923 | Msa0750540:CDS |
AGCGAAGGAGGCGAGGAATT+GGG | 0.382540 | 5_2:+3983610 | Msa0750540:CDS |
GAGAGATTGGAAATGAAAAT+GGG | 0.385615 | 5_2:+3983680 | Msa0750540:CDS |
ACTTCGAAAGAGTAGTTTGA+TGG | 0.388536 | 5_2:-3982897 | None:intergenic |
GATTTCTCTGCTATTGCTCT+TGG | 0.396289 | 5_2:+3983092 | Msa0750540:CDS |
AGCGTTTATGATAGCGAATC+CGG | 0.400296 | 5_2:+3983487 | Msa0750540:CDS |
CAAACAAAGAGATTCTATAA+GGG | 0.414212 | 5_2:-3983748 | None:intergenic |
TCGAAGTTCACAAATGCGTT+TGG | 0.417126 | 5_2:+3982913 | Msa0750540:CDS |
GGGTCGTTGAGGATTGAATC+TGG | 0.417738 | 5_2:-3982846 | None:intergenic |
GTAACTCACTGTTACGTTCT+CGG | 0.423153 | 5_2:+3983038 | Msa0750540:CDS |
TAGGGCTGTGAAGCCTGAAT+TGG | 0.423463 | 5_2:+3983313 | Msa0750540:CDS |
GGGGAAAGAGTTGGATGATA+AGG | 0.427023 | 5_2:+3983418 | Msa0750540:CDS |
TCCAACTCTTTCCCCACCTT+CGG | 0.427625 | 5_2:-3983410 | None:intergenic |
CAGTCGAAGCCGTTGTCTGC+TGG | 0.443942 | 5_2:+3983365 | Msa0750540:CDS |
CTCTTTGTTTGAAGATTCTG+TGG | 0.444587 | 5_2:+3983760 | Msa0750540:CDS |
GGAATCTTAGTAGAATCAAT+AGG | 0.450168 | 5_2:-3983155 | None:intergenic |
GCCTCAAAAGGAGTCAGAAC+TGG | 0.454686 | 5_2:-3983845 | None:intergenic |
TTGAAGATTCTGTGGATGCT+TGG | 0.461951 | 5_2:+3983768 | Msa0750540:CDS |
TTTAGGGTTTATGGGTAAAA+GGG | 0.464356 | 5_2:+3983253 | Msa0750540:CDS |
GTTGCTCTAACGGTAGCTGC+GGG | 0.466214 | 5_2:+3983963 | Msa0750540:CDS |
AGAAATAGTGATGGTGTTGT+TGG | 0.468978 | 5_2:-3982778 | None:intergenic |
ACCAAAATCTTCAGTCGCCT+TGG | 0.476477 | 5_2:-3983990 | None:intergenic |
TGATAAGGAAGAGAGTGTTT+TGG | 0.478103 | 5_2:+3983433 | Msa0750540:CDS |
AGGTTGTTCTGGAAATTCCA+TGG | 0.486487 | 5_2:-3982748 | None:intergenic |
ATATGATCATGTTGGTATGA+AGG | 0.487854 | 5_2:+3983562 | Msa0750540:CDS |
TGGTGTTTGTGTCGGATGGA+AGG | 0.488027 | 5_2:+3983453 | Msa0750540:CDS |
TGCGTTTAGCGGCGGTGGAA+CGG | 0.489236 | 5_2:-3982941 | None:intergenic |
GCGTTTATGATAGCGAATCC+GGG | 0.502842 | 5_2:+3983488 | Msa0750540:CDS |
TATGATCATGTTGGTATGAA+GGG | 0.506774 | 5_2:+3983563 | Msa0750540:CDS |
AGTGCTATCTCAGCCTCAAA+AGG | 0.509062 | 5_2:-3983857 | None:intergenic |
CGGTAGCTGCGGGGATGCCA+AGG | 0.510110 | 5_2:+3983973 | Msa0750540:CDS |
AAAACAACTTCCCCACATAA+GGG | 0.512334 | 5_2:-3983532 | None:intergenic |
TTGAAGAGCTATGCGTTTAG+CGG | 0.515595 | 5_2:-3982952 | None:intergenic |
GTAAAAGGGTTATTCTTGCT+GGG | 0.516662 | 5_2:+3983267 | Msa0750540:CDS |
TAGGAAAATTTCAGTAACTT+CGG | 0.516766 | 5_2:+3984093 | Msa0750540:CDS |
GAAATAGTGATGGTGTTGTT+GGG | 0.517684 | 5_2:-3982777 | None:intergenic |
GGGTGTACTGCGCCGAAGGT+GGG | 0.521160 | 5_2:+3983398 | Msa0750540:CDS |
GATATCTTCACCACCTTCGC+CGG | 0.525270 | 5_2:+3983014 | Msa0750540:CDS |
TTGGAGGAATATGATCATGT+TGG | 0.528489 | 5_2:+3983554 | Msa0750540:CDS |
GACTATTATGCTCAAGATGG+AGG | 0.530446 | 5_2:+3984028 | Msa0750540:CDS |
CGAAAGAGTAGTTTGATGGA+AGG | 0.531570 | 5_2:-3982893 | None:intergenic |
TTTAGGTATGACCCTTATGT+GGG | 0.532658 | 5_2:+3983521 | Msa0750540:CDS |
GCGAAGGAGGCGAGGAATTG+GGG | 0.533725 | 5_2:+3983611 | Msa0750540:CDS |
TGATGGAAGGATTGAGATTG+CGG | 0.540466 | 5_2:-3982880 | None:intergenic |
TACCTAAAAGCCTTAATCCC+CGG | 0.540870 | 5_2:-3983506 | None:intergenic |
GGTGTACTGCGCCGAAGGTG+GGG | 0.546341 | 5_2:+3983399 | Msa0750540:CDS |
AGATTGCGGCGTTGAGAAGT+GGG | 0.549039 | 5_2:-3982866 | None:intergenic |
GAGATTGCGGCGTTGAGAAG+TGG | 0.551098 | 5_2:-3982867 | None:intergenic |
AAGAGCGATTGTTGCTCTAA+CGG | 0.551801 | 5_2:+3983953 | Msa0750540:CDS |
GTTCTCGGTGATGTTACCTA+TGG | 0.552000 | 5_2:+3983053 | Msa0750540:CDS |
TTTAGGGTGTACTGCGCCGA+AGG | 0.552761 | 5_2:+3983394 | Msa0750540:CDS |
GGTCGTTGAGGATTGAATCT+GGG | 0.555765 | 5_2:-3982845 | None:intergenic |
CGTTGAGAAGTGGGTCGTTG+AGG | 0.563741 | 5_2:-3982857 | None:intergenic |
CCTAGACTCTCTATTGATTG+GGG | 0.565888 | 5_2:+3983806 | Msa0750540:CDS |
ACTATTATGCTCAAGATGGA+GGG | 0.566137 | 5_2:+3984029 | Msa0750540:CDS |
ATGCTCAAGATGGAGGGGAG+TGG | 0.569680 | 5_2:+3984035 | Msa0750540:CDS |
TCTTGAGCATAATAGTCCAT+TGG | 0.570183 | 5_2:-3984022 | None:intergenic |
GCAGACAACGGCTTCGACTG+CGG | 0.570442 | 5_2:-3983362 | None:intergenic |
ATGGACTATTATGCTCAAGA+TGG | 0.571439 | 5_2:+3984025 | Msa0750540:CDS |
TTCTTTGACAGAAATAGTGA+TGG | 0.575244 | 5_2:-3982787 | None:intergenic |
TTTGAGGCTGAGATAGCACT+GGG | 0.575711 | 5_2:+3983860 | Msa0750540:CDS |
CTATTATGCTCAAGATGGAG+GGG | 0.577204 | 5_2:+3984030 | Msa0750540:CDS |
AAAAGCCTAGTCGTCCTGCT+AGG | 0.588814 | 5_2:+3984074 | Msa0750540:CDS |
TGGGATTGATACCTGGATGG+TGG | 0.589217 | 5_2:+3983879 | Msa0750540:CDS |
TAAAGGATTTGATTATACTG+TGG | 0.592986 | 5_2:+3983706 | Msa0750540:CDS |
GGGATTGATACCTGGATGGT+GGG | 0.594275 | 5_2:+3983880 | Msa0750540:CDS |
ATCGATACAACAAGCACCAT+AGG | 0.598548 | 5_2:-3983069 | None:intergenic |
AGAGATTGGAAATGAAAATG+GGG | 0.600592 | 5_2:+3983681 | Msa0750540:CDS |
ATAGCACTGGGATTGATACC+TGG | 0.600649 | 5_2:+3983872 | Msa0750540:CDS |
TGTTGCTCTAACGGTAGCTG+CGG | 0.603328 | 5_2:+3983962 | Msa0750540:CDS |
CCCCAATCAATAGAGAGTCT+AGG | 0.603832 | 5_2:-3983806 | None:intergenic |
GCCGAAGGTGGGGAAAGAGT+TGG | 0.608987 | 5_2:+3983409 | Msa0750540:CDS |
ATAGCTCTTCAATTCCCTGA+AGG | 0.609428 | 5_2:+3982963 | Msa0750540:CDS |
GTGAGTTACACCGGCGAAGG+TGG | 0.617454 | 5_2:-3983024 | None:intergenic |
ATGATCATGTTGGTATGAAG+GGG | 0.622021 | 5_2:+3983564 | Msa0750540:CDS |
AAAACTCAGATGCAGAAACA+AGG | 0.622881 | 5_2:+3983905 | Msa0750540:CDS |
ATGTTGGTATGAAGGGGTCG+AGG | 0.623321 | 5_2:+3983570 | Msa0750540:CDS |
TTAGGGACTTTGGGTAGACA+AGG | 0.624346 | 5_2:+3983641 | Msa0750540:CDS |
GAGATTGGAAATGAAAATGG+GGG | 0.625888 | 5_2:+3983682 | Msa0750540:CDS |
AGTACATGAGAAGACCTTCA+GGG | 0.626061 | 5_2:-3982977 | None:intergenic |
AAGAGCTATGCGTTTAGCGG+CGG | 0.627002 | 5_2:-3982949 | None:intergenic |
ACAGTGAGTTACACCGGCGA+AGG | 0.629851 | 5_2:-3983027 | None:intergenic |
AACGTAACAGTGAGTTACAC+CGG | 0.640720 | 5_2:-3983033 | None:intergenic |
TAGGGACTTTGGGTAGACAA+GGG | 0.641045 | 5_2:+3983642 | Msa0750540:CDS |
CGTTTATGATAGCGAATCCG+GGG | 0.643038 | 5_2:+3983489 | Msa0750540:CDS |
CACTGGGATTGATACCTGGA+TGG | 0.644522 | 5_2:+3983876 | Msa0750540:CDS |
AAAATCTCACCAGCAGACAA+CGG | 0.661511 | 5_2:-3983374 | None:intergenic |
TTAGGTATGACCCTTATGTG+GGG | 0.683162 | 5_2:+3983522 | Msa0750540:CDS |
TTGCTCTAACGGTAGCTGCG+GGG | 0.685362 | 5_2:+3983964 | Msa0750540:CDS |
AGGTGGTGAAGATATCAGAG+AGG | 0.733119 | 5_2:-3983007 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TCAACAAAAACATAAAGACA+AGG | - | chr5_2:3983179-3983198 | None:intergenic | 25.0% |
!!! | TACTGTTAAGTTGAATTCTA+AGG | + | chr5_2:3983229-3983248 | Msa0750540:CDS | 25.0% |
!! | AAGTTGAATTCTAAGGATTT+AGG | + | chr5_2:3983236-3983255 | Msa0750540:CDS | 25.0% |
!! | AGTTGAATTCTAAGGATTTA+GGG | + | chr5_2:3983237-3983256 | Msa0750540:CDS | 25.0% |
! | TAAAGGATTTGATTATACTG+TGG | + | chr5_2:3983706-3983725 | Msa0750540:CDS | 25.0% |
! | CAAACAAAGAGATTCTATAA+GGG | - | chr5_2:3983751-3983770 | None:intergenic | 25.0% |
! | TCAAACAAAGAGATTCTATA+AGG | - | chr5_2:3983752-3983771 | None:intergenic | 25.0% |
! | TAGGAAAATTTCAGTAACTT+CGG | + | chr5_2:3984093-3984112 | Msa0750540:CDS | 25.0% |
! | TCAACAAAAACATAAAGACA+AGG | - | chr5_2:3983179-3983198 | None:intergenic | 25.0% |
!!! | TACTGTTAAGTTGAATTCTA+AGG | + | chr5_2:3983229-3983248 | Msa0750540:CDS | 25.0% |
!! | AAGTTGAATTCTAAGGATTT+AGG | + | chr5_2:3983236-3983255 | Msa0750540:CDS | 25.0% |
!! | AGTTGAATTCTAAGGATTTA+GGG | + | chr5_2:3983237-3983256 | Msa0750540:CDS | 25.0% |
! | TAAAGGATTTGATTATACTG+TGG | + | chr5_2:3983706-3983725 | Msa0750540:CDS | 25.0% |
! | CAAACAAAGAGATTCTATAA+GGG | - | chr5_2:3983751-3983770 | None:intergenic | 25.0% |
! | TCAAACAAAGAGATTCTATA+AGG | - | chr5_2:3983752-3983771 | None:intergenic | 25.0% |
! | TAGGAAAATTTCAGTAACTT+CGG | + | chr5_2:3984093-3984112 | Msa0750540:CDS | 25.0% |
TTCTTTGACAGAAATAGTGA+TGG | - | chr5_2:3982790-3982809 | None:intergenic | 30.0% | |
!!! | TTGATGAATCGTTTTGGTTT+TGG | - | chr5_2:3982816-3982835 | None:intergenic | 30.0% |
! | TGGTTTTTGATGAATCGTTT+TGG | - | chr5_2:3982822-3982841 | None:intergenic | 30.0% |
GCTGAGATTCTTATTCATTA+TGG | + | chr5_2:3983116-3983135 | Msa0750540:CDS | 30.0% | |
GGAATCTTAGTAGAATCAAT+AGG | - | chr5_2:3983158-3983177 | None:intergenic | 30.0% | |
! | TTCTAAGGATTTAGGGTTTA+TGG | + | chr5_2:3983244-3983263 | Msa0750540:CDS | 30.0% |
! | TCTAAGGATTTAGGGTTTAT+GGG | + | chr5_2:3983245-3983264 | Msa0750540:CDS | 30.0% |
! | ATTTAGGGTTTATGGGTAAA+AGG | + | chr5_2:3983252-3983271 | Msa0750540:CDS | 30.0% |
! | TTTAGGGTTTATGGGTAAAA+GGG | + | chr5_2:3983253-3983272 | Msa0750540:CDS | 30.0% |
AATTGGAGAAATTAGGGTTT+AGG | + | chr5_2:3983330-3983349 | Msa0750540:CDS | 30.0% | |
ATTGGAGAAATTAGGGTTTA+GGG | + | chr5_2:3983331-3983350 | Msa0750540:CDS | 30.0% | |
ATATGATCATGTTGGTATGA+AGG | + | chr5_2:3983562-3983581 | Msa0750540:CDS | 30.0% | |
TATGATCATGTTGGTATGAA+GGG | + | chr5_2:3983563-3983582 | Msa0750540:CDS | 30.0% | |
!! | AAATGCAATTTTGAAAGCGA+AGG | + | chr5_2:3983595-3983614 | Msa0750540:CDS | 30.0% |
GAGAGATTGGAAATGAAAAT+GGG | + | chr5_2:3983680-3983699 | Msa0750540:CDS | 30.0% | |
AGAGATTGGAAATGAAAATG+GGG | + | chr5_2:3983681-3983700 | Msa0750540:CDS | 30.0% | |
!!! | ACTAGGCTTTTTCATATAAG+AGG | - | chr5_2:3984065-3984084 | None:intergenic | 30.0% |
TTCTTTGACAGAAATAGTGA+TGG | - | chr5_2:3982790-3982809 | None:intergenic | 30.0% | |
!!! | TTGATGAATCGTTTTGGTTT+TGG | - | chr5_2:3982816-3982835 | None:intergenic | 30.0% |
! | TGGTTTTTGATGAATCGTTT+TGG | - | chr5_2:3982822-3982841 | None:intergenic | 30.0% |
GCTGAGATTCTTATTCATTA+TGG | + | chr5_2:3983116-3983135 | Msa0750540:CDS | 30.0% | |
GGAATCTTAGTAGAATCAAT+AGG | - | chr5_2:3983158-3983177 | None:intergenic | 30.0% | |
! | TTCTAAGGATTTAGGGTTTA+TGG | + | chr5_2:3983244-3983263 | Msa0750540:CDS | 30.0% |
! | TCTAAGGATTTAGGGTTTAT+GGG | + | chr5_2:3983245-3983264 | Msa0750540:CDS | 30.0% |
! | ATTTAGGGTTTATGGGTAAA+AGG | + | chr5_2:3983252-3983271 | Msa0750540:CDS | 30.0% |
! | TTTAGGGTTTATGGGTAAAA+GGG | + | chr5_2:3983253-3983272 | Msa0750540:CDS | 30.0% |
AATTGGAGAAATTAGGGTTT+AGG | + | chr5_2:3983330-3983349 | Msa0750540:CDS | 30.0% | |
ATTGGAGAAATTAGGGTTTA+GGG | + | chr5_2:3983331-3983350 | Msa0750540:CDS | 30.0% | |
ATATGATCATGTTGGTATGA+AGG | + | chr5_2:3983562-3983581 | Msa0750540:CDS | 30.0% | |
TATGATCATGTTGGTATGAA+GGG | + | chr5_2:3983563-3983582 | Msa0750540:CDS | 30.0% | |
!! | AAATGCAATTTTGAAAGCGA+AGG | + | chr5_2:3983595-3983614 | Msa0750540:CDS | 30.0% |
GAGAGATTGGAAATGAAAAT+GGG | + | chr5_2:3983680-3983699 | Msa0750540:CDS | 30.0% | |
AGAGATTGGAAATGAAAATG+GGG | + | chr5_2:3983681-3983700 | Msa0750540:CDS | 30.0% | |
!!! | ACTAGGCTTTTTCATATAAG+AGG | - | chr5_2:3984065-3984084 | None:intergenic | 30.0% |
!! | GAAATAGTGATGGTGTTGTT+GGG | - | chr5_2:3982780-3982799 | None:intergenic | 35.0% |
!! | AGAAATAGTGATGGTGTTGT+TGG | - | chr5_2:3982781-3982800 | None:intergenic | 35.0% |
ACTTCGAAAGAGTAGTTTGA+TGG | - | chr5_2:3982900-3982919 | None:intergenic | 35.0% | |
GTAAAAGGGTTATTCTTGCT+GGG | + | chr5_2:3983267-3983286 | Msa0750540:CDS | 35.0% | |
AAGCCTGAATTGGAGAAATT+AGG | + | chr5_2:3983323-3983342 | Msa0750540:CDS | 35.0% | |
AGCCTGAATTGGAGAAATTA+GGG | + | chr5_2:3983324-3983343 | Msa0750540:CDS | 35.0% | |
AACCCTAATTTCTCCAATTC+AGG | - | chr5_2:3983329-3983348 | None:intergenic | 35.0% | |
!! | GAAATTAGGGTTTAGGGTTT+TGG | + | chr5_2:3983337-3983356 | Msa0750540:CDS | 35.0% |
!!! | TGATAAGGAAGAGAGTGTTT+TGG | + | chr5_2:3983433-3983452 | Msa0750540:CDS | 35.0% |
!! | TTTTAGGTATGACCCTTATG+TGG | + | chr5_2:3983520-3983539 | Msa0750540:CDS | 35.0% |
TTTAGGTATGACCCTTATGT+GGG | + | chr5_2:3983521-3983540 | Msa0750540:CDS | 35.0% | |
AAAACAACTTCCCCACATAA+GGG | - | chr5_2:3983535-3983554 | None:intergenic | 35.0% | |
AAAAACAACTTCCCCACATA+AGG | - | chr5_2:3983536-3983555 | None:intergenic | 35.0% | |
!! | TTATGTGGGGAAGTTGTTTT+TGG | + | chr5_2:3983535-3983554 | Msa0750540:CDS | 35.0% |
TTGGAGGAATATGATCATGT+TGG | + | chr5_2:3983554-3983573 | Msa0750540:CDS | 35.0% | |
ATGATCATGTTGGTATGAAG+GGG | + | chr5_2:3983564-3983583 | Msa0750540:CDS | 35.0% | |
! | ACAAGGGAATCCTAAGATTT+TGG | + | chr5_2:3983658-3983677 | Msa0750540:CDS | 35.0% |
!! | TCCTAAGATTTTGGAGAGAT+TGG | + | chr5_2:3983667-3983686 | Msa0750540:CDS | 35.0% |
TCCAATCTCTCCAAAATCTT+AGG | - | chr5_2:3983671-3983690 | None:intergenic | 35.0% | |
GGAGAGATTGGAAATGAAAA+TGG | + | chr5_2:3983679-3983698 | Msa0750540:CDS | 35.0% | |
GAGATTGGAAATGAAAATGG+GGG | + | chr5_2:3983682-3983701 | Msa0750540:CDS | 35.0% | |
GAAATGAAAATGGGGGATAA+AGG | + | chr5_2:3983689-3983708 | Msa0750540:CDS | 35.0% | |
! | CTCTTTGTTTGAAGATTCTG+TGG | + | chr5_2:3983760-3983779 | Msa0750540:CDS | 35.0% |
! | TCCTAGACTCTCTATTGATT+GGG | + | chr5_2:3983805-3983824 | Msa0750540:CDS | 35.0% |
AAAACTCAGATGCAGAAACA+AGG | + | chr5_2:3983905-3983924 | Msa0750540:CDS | 35.0% | |
! | TTTTGGTGGAGATTATCCAA+TGG | + | chr5_2:3984006-3984025 | Msa0750540:CDS | 35.0% |
TCTTGAGCATAATAGTCCAT+TGG | - | chr5_2:3984025-3984044 | None:intergenic | 35.0% | |
! | ATGGACTATTATGCTCAAGA+TGG | + | chr5_2:3984025-3984044 | Msa0750540:CDS | 35.0% |
ACTATTATGCTCAAGATGGA+GGG | + | chr5_2:3984029-3984048 | Msa0750540:CDS | 35.0% | |
! | GTTACTGAAATTTTCCTAGC+AGG | - | chr5_2:3984091-3984110 | None:intergenic | 35.0% |
!! | GAAATAGTGATGGTGTTGTT+GGG | - | chr5_2:3982780-3982799 | None:intergenic | 35.0% |
!! | AGAAATAGTGATGGTGTTGT+TGG | - | chr5_2:3982781-3982800 | None:intergenic | 35.0% |
ACTTCGAAAGAGTAGTTTGA+TGG | - | chr5_2:3982900-3982919 | None:intergenic | 35.0% | |
GTAAAAGGGTTATTCTTGCT+GGG | + | chr5_2:3983267-3983286 | Msa0750540:CDS | 35.0% | |
AAGCCTGAATTGGAGAAATT+AGG | + | chr5_2:3983323-3983342 | Msa0750540:CDS | 35.0% | |
AGCCTGAATTGGAGAAATTA+GGG | + | chr5_2:3983324-3983343 | Msa0750540:CDS | 35.0% | |
AACCCTAATTTCTCCAATTC+AGG | - | chr5_2:3983329-3983348 | None:intergenic | 35.0% | |
!! | GAAATTAGGGTTTAGGGTTT+TGG | + | chr5_2:3983337-3983356 | Msa0750540:CDS | 35.0% |
!!! | TGATAAGGAAGAGAGTGTTT+TGG | + | chr5_2:3983433-3983452 | Msa0750540:CDS | 35.0% |
!! | TTTTAGGTATGACCCTTATG+TGG | + | chr5_2:3983520-3983539 | Msa0750540:CDS | 35.0% |
TTTAGGTATGACCCTTATGT+GGG | + | chr5_2:3983521-3983540 | Msa0750540:CDS | 35.0% | |
AAAACAACTTCCCCACATAA+GGG | - | chr5_2:3983535-3983554 | None:intergenic | 35.0% | |
AAAAACAACTTCCCCACATA+AGG | - | chr5_2:3983536-3983555 | None:intergenic | 35.0% | |
!! | TTATGTGGGGAAGTTGTTTT+TGG | + | chr5_2:3983535-3983554 | Msa0750540:CDS | 35.0% |
TTGGAGGAATATGATCATGT+TGG | + | chr5_2:3983554-3983573 | Msa0750540:CDS | 35.0% | |
ATGATCATGTTGGTATGAAG+GGG | + | chr5_2:3983564-3983583 | Msa0750540:CDS | 35.0% | |
! | ACAAGGGAATCCTAAGATTT+TGG | + | chr5_2:3983658-3983677 | Msa0750540:CDS | 35.0% |
!! | TCCTAAGATTTTGGAGAGAT+TGG | + | chr5_2:3983667-3983686 | Msa0750540:CDS | 35.0% |
TCCAATCTCTCCAAAATCTT+AGG | - | chr5_2:3983671-3983690 | None:intergenic | 35.0% | |
GGAGAGATTGGAAATGAAAA+TGG | + | chr5_2:3983679-3983698 | Msa0750540:CDS | 35.0% | |
GAGATTGGAAATGAAAATGG+GGG | + | chr5_2:3983682-3983701 | Msa0750540:CDS | 35.0% | |
GAAATGAAAATGGGGGATAA+AGG | + | chr5_2:3983689-3983708 | Msa0750540:CDS | 35.0% | |
! | CTCTTTGTTTGAAGATTCTG+TGG | + | chr5_2:3983760-3983779 | Msa0750540:CDS | 35.0% |
! | TCCTAGACTCTCTATTGATT+GGG | + | chr5_2:3983805-3983824 | Msa0750540:CDS | 35.0% |
AAAACTCAGATGCAGAAACA+AGG | + | chr5_2:3983905-3983924 | Msa0750540:CDS | 35.0% | |
! | TTTTGGTGGAGATTATCCAA+TGG | + | chr5_2:3984006-3984025 | Msa0750540:CDS | 35.0% |
TCTTGAGCATAATAGTCCAT+TGG | - | chr5_2:3984025-3984044 | None:intergenic | 35.0% | |
! | ATGGACTATTATGCTCAAGA+TGG | + | chr5_2:3984025-3984044 | Msa0750540:CDS | 35.0% |
ACTATTATGCTCAAGATGGA+GGG | + | chr5_2:3984029-3984048 | Msa0750540:CDS | 35.0% | |
! | GTTACTGAAATTTTCCTAGC+AGG | - | chr5_2:3984091-3984110 | None:intergenic | 35.0% |
!!! | TTGGGTTTTTCAGGTTGTTC+TGG | - | chr5_2:3982762-3982781 | None:intergenic | 40.0% |
!!! | ATGGTGTTGTTGGGTTTTTC+AGG | - | chr5_2:3982771-3982790 | None:intergenic | 40.0% |
! | TGAGGATTGAATCTGGGATT+TGG | - | chr5_2:3982842-3982861 | None:intergenic | 40.0% |
TGATGGAAGGATTGAGATTG+CGG | - | chr5_2:3982883-3982902 | None:intergenic | 40.0% | |
CGAAAGAGTAGTTTGATGGA+AGG | - | chr5_2:3982896-3982915 | None:intergenic | 40.0% | |
TCGAAGTTCACAAATGCGTT+TGG | + | chr5_2:3982913-3982932 | Msa0750540:CDS | 40.0% | |
TTGAAGAGCTATGCGTTTAG+CGG | - | chr5_2:3982955-3982974 | None:intergenic | 40.0% | |
ATAGCTCTTCAATTCCCTGA+AGG | + | chr5_2:3982963-3982982 | Msa0750540:CDS | 40.0% | |
AGTACATGAGAAGACCTTCA+GGG | - | chr5_2:3982980-3982999 | None:intergenic | 40.0% | |
AACGTAACAGTGAGTTACAC+CGG | - | chr5_2:3983036-3983055 | None:intergenic | 40.0% | |
GTAACTCACTGTTACGTTCT+CGG | + | chr5_2:3983038-3983057 | Msa0750540:CDS | 40.0% | |
ATCGATACAACAAGCACCAT+AGG | - | chr5_2:3983072-3983091 | None:intergenic | 40.0% | |
GATTTCTCTGCTATTGCTCT+TGG | + | chr5_2:3983092-3983111 | Msa0750540:CDS | 40.0% | |
GGTAAAAGGGTTATTCTTGC+TGG | + | chr5_2:3983266-3983285 | Msa0750540:CDS | 40.0% | |
! | GGACTATTCAGTTTGCTTCT+GGG | + | chr5_2:3983288-3983307 | Msa0750540:CDS | 40.0% |
!! | TTCAGTTTGCTTCTGGGATT+AGG | + | chr5_2:3983294-3983313 | Msa0750540:CDS | 40.0% |
!! | TCAGTTTGCTTCTGGGATTA+GGG | + | chr5_2:3983295-3983314 | Msa0750540:CDS | 40.0% |
AAAATCTCACCAGCAGACAA+CGG | - | chr5_2:3983377-3983396 | None:intergenic | 40.0% | |
! | TTGTCTGCTGGTGAGATTTT+AGG | + | chr5_2:3983377-3983396 | Msa0750540:CDS | 40.0% |
! | TGTCTGCTGGTGAGATTTTA+GGG | + | chr5_2:3983378-3983397 | Msa0750540:CDS | 40.0% |
!!! | GAGTGTTTTGGTGTTTGTGT+CGG | + | chr5_2:3983445-3983464 | Msa0750540:CDS | 40.0% |
! | AGCGTTTATGATAGCGAATC+CGG | + | chr5_2:3983487-3983506 | Msa0750540:CDS | 40.0% |
TACCTAAAAGCCTTAATCCC+CGG | - | chr5_2:3983509-3983528 | None:intergenic | 40.0% | |
TTAGGTATGACCCTTATGTG+GGG | + | chr5_2:3983522-3983541 | Msa0750540:CDS | 40.0% | |
!! | TGCAATTTTGAAAGCGAAGG+AGG | + | chr5_2:3983598-3983617 | Msa0750540:CDS | 40.0% |
TTGAAGATTCTGTGGATGCT+TGG | + | chr5_2:3983768-3983787 | Msa0750540:CDS | 40.0% | |
GTCCTAGACTCTCTATTGAT+TGG | + | chr5_2:3983804-3983823 | Msa0750540:CDS | 40.0% | |
! | CCTAGACTCTCTATTGATTG+GGG | + | chr5_2:3983806-3983825 | Msa0750540:CDS | 40.0% |
CAAGGTTGTGAAGATGTTAC+AGG | + | chr5_2:3983923-3983942 | Msa0750540:CDS | 40.0% | |
AAGAGCGATTGTTGCTCTAA+CGG | + | chr5_2:3983953-3983972 | Msa0750540:CDS | 40.0% | |
GACTATTATGCTCAAGATGG+AGG | + | chr5_2:3984028-3984047 | Msa0750540:CDS | 40.0% | |
CTATTATGCTCAAGATGGAG+GGG | + | chr5_2:3984030-3984049 | Msa0750540:CDS | 40.0% | |
!!! | TTGGGTTTTTCAGGTTGTTC+TGG | - | chr5_2:3982762-3982781 | None:intergenic | 40.0% |
!!! | ATGGTGTTGTTGGGTTTTTC+AGG | - | chr5_2:3982771-3982790 | None:intergenic | 40.0% |
! | TGAGGATTGAATCTGGGATT+TGG | - | chr5_2:3982842-3982861 | None:intergenic | 40.0% |
TGATGGAAGGATTGAGATTG+CGG | - | chr5_2:3982883-3982902 | None:intergenic | 40.0% | |
CGAAAGAGTAGTTTGATGGA+AGG | - | chr5_2:3982896-3982915 | None:intergenic | 40.0% | |
TCGAAGTTCACAAATGCGTT+TGG | + | chr5_2:3982913-3982932 | Msa0750540:CDS | 40.0% | |
TTGAAGAGCTATGCGTTTAG+CGG | - | chr5_2:3982955-3982974 | None:intergenic | 40.0% | |
ATAGCTCTTCAATTCCCTGA+AGG | + | chr5_2:3982963-3982982 | Msa0750540:CDS | 40.0% | |
AGTACATGAGAAGACCTTCA+GGG | - | chr5_2:3982980-3982999 | None:intergenic | 40.0% | |
AACGTAACAGTGAGTTACAC+CGG | - | chr5_2:3983036-3983055 | None:intergenic | 40.0% | |
GTAACTCACTGTTACGTTCT+CGG | + | chr5_2:3983038-3983057 | Msa0750540:CDS | 40.0% | |
ATCGATACAACAAGCACCAT+AGG | - | chr5_2:3983072-3983091 | None:intergenic | 40.0% | |
GATTTCTCTGCTATTGCTCT+TGG | + | chr5_2:3983092-3983111 | Msa0750540:CDS | 40.0% | |
GGTAAAAGGGTTATTCTTGC+TGG | + | chr5_2:3983266-3983285 | Msa0750540:CDS | 40.0% | |
! | GGACTATTCAGTTTGCTTCT+GGG | + | chr5_2:3983288-3983307 | Msa0750540:CDS | 40.0% |
!! | TTCAGTTTGCTTCTGGGATT+AGG | + | chr5_2:3983294-3983313 | Msa0750540:CDS | 40.0% |
!! | TCAGTTTGCTTCTGGGATTA+GGG | + | chr5_2:3983295-3983314 | Msa0750540:CDS | 40.0% |
AAAATCTCACCAGCAGACAA+CGG | - | chr5_2:3983377-3983396 | None:intergenic | 40.0% | |
! | TTGTCTGCTGGTGAGATTTT+AGG | + | chr5_2:3983377-3983396 | Msa0750540:CDS | 40.0% |
! | TGTCTGCTGGTGAGATTTTA+GGG | + | chr5_2:3983378-3983397 | Msa0750540:CDS | 40.0% |
!!! | GAGTGTTTTGGTGTTTGTGT+CGG | + | chr5_2:3983445-3983464 | Msa0750540:CDS | 40.0% |
! | AGCGTTTATGATAGCGAATC+CGG | + | chr5_2:3983487-3983506 | Msa0750540:CDS | 40.0% |
TACCTAAAAGCCTTAATCCC+CGG | - | chr5_2:3983509-3983528 | None:intergenic | 40.0% | |
TTAGGTATGACCCTTATGTG+GGG | + | chr5_2:3983522-3983541 | Msa0750540:CDS | 40.0% | |
!! | TGCAATTTTGAAAGCGAAGG+AGG | + | chr5_2:3983598-3983617 | Msa0750540:CDS | 40.0% |
TTGAAGATTCTGTGGATGCT+TGG | + | chr5_2:3983768-3983787 | Msa0750540:CDS | 40.0% | |
GTCCTAGACTCTCTATTGAT+TGG | + | chr5_2:3983804-3983823 | Msa0750540:CDS | 40.0% | |
! | CCTAGACTCTCTATTGATTG+GGG | + | chr5_2:3983806-3983825 | Msa0750540:CDS | 40.0% |
CAAGGTTGTGAAGATGTTAC+AGG | + | chr5_2:3983923-3983942 | Msa0750540:CDS | 40.0% | |
AAGAGCGATTGTTGCTCTAA+CGG | + | chr5_2:3983953-3983972 | Msa0750540:CDS | 40.0% | |
GACTATTATGCTCAAGATGG+AGG | + | chr5_2:3984028-3984047 | Msa0750540:CDS | 40.0% | |
CTATTATGCTCAAGATGGAG+GGG | + | chr5_2:3984030-3984049 | Msa0750540:CDS | 40.0% | |
GGTCGTTGAGGATTGAATCT+GGG | - | chr5_2:3982848-3982867 | None:intergenic | 45.0% | |
GAGTACATGAGAAGACCTTC+AGG | - | chr5_2:3982981-3983000 | None:intergenic | 45.0% | |
AGGTGGTGAAGATATCAGAG+AGG | - | chr5_2:3983010-3983029 | None:intergenic | 45.0% | |
GTTCTCGGTGATGTTACCTA+TGG | + | chr5_2:3983053-3983072 | Msa0750540:CDS | 45.0% | |
! | GGGACTATTCAGTTTGCTTC+TGG | + | chr5_2:3983287-3983306 | Msa0750540:CDS | 45.0% |
GGGGAAAGAGTTGGATGATA+AGG | + | chr5_2:3983418-3983437 | Msa0750540:CDS | 45.0% | |
!!! | GTTTTGGTGTTTGTGTCGGA+TGG | + | chr5_2:3983449-3983468 | Msa0750540:CDS | 45.0% |
! | GCGTTTATGATAGCGAATCC+GGG | + | chr5_2:3983488-3983507 | Msa0750540:CDS | 45.0% |
! | CGTTTATGATAGCGAATCCG+GGG | + | chr5_2:3983489-3983508 | Msa0750540:CDS | 45.0% |
! | ATCCGGGGATTAAGGCTTTT+AGG | + | chr5_2:3983504-3983523 | Msa0750540:CDS | 45.0% |
!!! | TGTGGGGAAGTTGTTTTTGG+AGG | + | chr5_2:3983538-3983557 | Msa0750540:CDS | 45.0% |
!!! | AGGAATTGGGGCGTTGTTTT+AGG | + | chr5_2:3983623-3983642 | Msa0750540:CDS | 45.0% |
!!! | GGAATTGGGGCGTTGTTTTA+GGG | + | chr5_2:3983624-3983643 | Msa0750540:CDS | 45.0% |
!!! | GGCGTTGTTTTAGGGACTTT+GGG | + | chr5_2:3983632-3983651 | Msa0750540:CDS | 45.0% |
TTAGGGACTTTGGGTAGACA+AGG | + | chr5_2:3983641-3983660 | Msa0750540:CDS | 45.0% | |
TAGGGACTTTGGGTAGACAA+GGG | + | chr5_2:3983642-3983661 | Msa0750540:CDS | 45.0% | |
CCCCAATCAATAGAGAGTCT+AGG | - | chr5_2:3983809-3983828 | None:intergenic | 45.0% | |
!! | ACCAGTTCTGACTCCTTTTG+AGG | + | chr5_2:3983844-3983863 | Msa0750540:CDS | 45.0% |
AGTGCTATCTCAGCCTCAAA+AGG | - | chr5_2:3983860-3983879 | None:intergenic | 45.0% | |
!!! | TTTTGAGGCTGAGATAGCAC+TGG | + | chr5_2:3983859-3983878 | Msa0750540:CDS | 45.0% |
! | TTTGAGGCTGAGATAGCACT+GGG | + | chr5_2:3983860-3983879 | Msa0750540:CDS | 45.0% |
! | ATAGCACTGGGATTGATACC+TGG | + | chr5_2:3983872-3983891 | Msa0750540:CDS | 45.0% |
ACCAAAATCTTCAGTCGCCT+TGG | - | chr5_2:3983993-3984012 | None:intergenic | 45.0% | |
! | AAGGCGACTGAAGATTTTGG+TGG | + | chr5_2:3983992-3984011 | Msa0750540:CDS | 45.0% |
! | ATTTTCCTAGCAGGACGACT+AGG | - | chr5_2:3984082-3984101 | None:intergenic | 45.0% |
GGTCGTTGAGGATTGAATCT+GGG | - | chr5_2:3982848-3982867 | None:intergenic | 45.0% | |
GAGTACATGAGAAGACCTTC+AGG | - | chr5_2:3982981-3983000 | None:intergenic | 45.0% | |
AGGTGGTGAAGATATCAGAG+AGG | - | chr5_2:3983010-3983029 | None:intergenic | 45.0% | |
GTTCTCGGTGATGTTACCTA+TGG | + | chr5_2:3983053-3983072 | Msa0750540:CDS | 45.0% | |
! | GGGACTATTCAGTTTGCTTC+TGG | + | chr5_2:3983287-3983306 | Msa0750540:CDS | 45.0% |
GGGGAAAGAGTTGGATGATA+AGG | + | chr5_2:3983418-3983437 | Msa0750540:CDS | 45.0% | |
!!! | GTTTTGGTGTTTGTGTCGGA+TGG | + | chr5_2:3983449-3983468 | Msa0750540:CDS | 45.0% |
! | GCGTTTATGATAGCGAATCC+GGG | + | chr5_2:3983488-3983507 | Msa0750540:CDS | 45.0% |
! | CGTTTATGATAGCGAATCCG+GGG | + | chr5_2:3983489-3983508 | Msa0750540:CDS | 45.0% |
! | ATCCGGGGATTAAGGCTTTT+AGG | + | chr5_2:3983504-3983523 | Msa0750540:CDS | 45.0% |
!!! | TGTGGGGAAGTTGTTTTTGG+AGG | + | chr5_2:3983538-3983557 | Msa0750540:CDS | 45.0% |
!!! | AGGAATTGGGGCGTTGTTTT+AGG | + | chr5_2:3983623-3983642 | Msa0750540:CDS | 45.0% |
!!! | GGAATTGGGGCGTTGTTTTA+GGG | + | chr5_2:3983624-3983643 | Msa0750540:CDS | 45.0% |
!!! | GGCGTTGTTTTAGGGACTTT+GGG | + | chr5_2:3983632-3983651 | Msa0750540:CDS | 45.0% |
TTAGGGACTTTGGGTAGACA+AGG | + | chr5_2:3983641-3983660 | Msa0750540:CDS | 45.0% | |
TAGGGACTTTGGGTAGACAA+GGG | + | chr5_2:3983642-3983661 | Msa0750540:CDS | 45.0% | |
CCCCAATCAATAGAGAGTCT+AGG | - | chr5_2:3983809-3983828 | None:intergenic | 45.0% | |
!! | ACCAGTTCTGACTCCTTTTG+AGG | + | chr5_2:3983844-3983863 | Msa0750540:CDS | 45.0% |
AGTGCTATCTCAGCCTCAAA+AGG | - | chr5_2:3983860-3983879 | None:intergenic | 45.0% | |
!!! | TTTTGAGGCTGAGATAGCAC+TGG | + | chr5_2:3983859-3983878 | Msa0750540:CDS | 45.0% |
! | TTTGAGGCTGAGATAGCACT+GGG | + | chr5_2:3983860-3983879 | Msa0750540:CDS | 45.0% |
! | ATAGCACTGGGATTGATACC+TGG | + | chr5_2:3983872-3983891 | Msa0750540:CDS | 45.0% |
ACCAAAATCTTCAGTCGCCT+TGG | - | chr5_2:3983993-3984012 | None:intergenic | 45.0% | |
! | AAGGCGACTGAAGATTTTGG+TGG | + | chr5_2:3983992-3984011 | Msa0750540:CDS | 45.0% |
! | ATTTTCCTAGCAGGACGACT+AGG | - | chr5_2:3984082-3984101 | None:intergenic | 45.0% |
GGGTCGTTGAGGATTGAATC+TGG | - | chr5_2:3982849-3982868 | None:intergenic | 50.0% | |
! | AGATTGCGGCGTTGAGAAGT+GGG | - | chr5_2:3982869-3982888 | None:intergenic | 50.0% |
AAGAGCTATGCGTTTAGCGG+CGG | - | chr5_2:3982952-3982971 | None:intergenic | 50.0% | |
GATATCTTCACCACCTTCGC+CGG | + | chr5_2:3983014-3983033 | Msa0750540:CDS | 50.0% | |
TAGGGCTGTGAAGCCTGAAT+TGG | + | chr5_2:3983313-3983332 | Msa0750540:CDS | 50.0% | |
TCCAACTCTTTCCCCACCTT+CGG | - | chr5_2:3983413-3983432 | None:intergenic | 50.0% | |
TGGTGTTTGTGTCGGATGGA+AGG | + | chr5_2:3983453-3983472 | Msa0750540:CDS | 50.0% | |
GATAGCGAATCCGGGGATTA+AGG | + | chr5_2:3983496-3983515 | Msa0750540:CDS | 50.0% | |
ATGTTGGTATGAAGGGGTCG+AGG | + | chr5_2:3983570-3983589 | Msa0750540:CDS | 50.0% | |
!! | TTTTGAAAGCGAAGGAGGCG+AGG | + | chr5_2:3983603-3983622 | Msa0750540:CDS | 50.0% |
!!! | GGGCGTTGTTTTAGGGACTT+TGG | + | chr5_2:3983631-3983650 | Msa0750540:CDS | 50.0% |
GCCTCAAAAGGAGTCAGAAC+TGG | - | chr5_2:3983848-3983867 | None:intergenic | 50.0% | |
CACTGGGATTGATACCTGGA+TGG | + | chr5_2:3983876-3983895 | Msa0750540:CDS | 50.0% | |
TGGGATTGATACCTGGATGG+TGG | + | chr5_2:3983879-3983898 | Msa0750540:CDS | 50.0% | |
GGGATTGATACCTGGATGGT+GGG | + | chr5_2:3983880-3983899 | Msa0750540:CDS | 50.0% | |
! | TGAGTTTTCTCCCACCATCC+AGG | - | chr5_2:3983893-3983912 | None:intergenic | 50.0% |
TGTTGCTCTAACGGTAGCTG+CGG | + | chr5_2:3983962-3983981 | Msa0750540:CDS | 50.0% | |
! | GCCAAGGCGACTGAAGATTT+TGG | + | chr5_2:3983989-3984008 | Msa0750540:CDS | 50.0% |
AAAAGCCTAGTCGTCCTGCT+AGG | + | chr5_2:3984074-3984093 | Msa0750540:CDS | 50.0% | |
GGGTCGTTGAGGATTGAATC+TGG | - | chr5_2:3982849-3982868 | None:intergenic | 50.0% | |
! | AGATTGCGGCGTTGAGAAGT+GGG | - | chr5_2:3982869-3982888 | None:intergenic | 50.0% |
AAGAGCTATGCGTTTAGCGG+CGG | - | chr5_2:3982952-3982971 | None:intergenic | 50.0% | |
GATATCTTCACCACCTTCGC+CGG | + | chr5_2:3983014-3983033 | Msa0750540:CDS | 50.0% | |
TAGGGCTGTGAAGCCTGAAT+TGG | + | chr5_2:3983313-3983332 | Msa0750540:CDS | 50.0% | |
TCCAACTCTTTCCCCACCTT+CGG | - | chr5_2:3983413-3983432 | None:intergenic | 50.0% | |
TGGTGTTTGTGTCGGATGGA+AGG | + | chr5_2:3983453-3983472 | Msa0750540:CDS | 50.0% | |
GATAGCGAATCCGGGGATTA+AGG | + | chr5_2:3983496-3983515 | Msa0750540:CDS | 50.0% | |
ATGTTGGTATGAAGGGGTCG+AGG | + | chr5_2:3983570-3983589 | Msa0750540:CDS | 50.0% | |
!! | TTTTGAAAGCGAAGGAGGCG+AGG | + | chr5_2:3983603-3983622 | Msa0750540:CDS | 50.0% |
!!! | GGGCGTTGTTTTAGGGACTT+TGG | + | chr5_2:3983631-3983650 | Msa0750540:CDS | 50.0% |
GCCTCAAAAGGAGTCAGAAC+TGG | - | chr5_2:3983848-3983867 | None:intergenic | 50.0% | |
CACTGGGATTGATACCTGGA+TGG | + | chr5_2:3983876-3983895 | Msa0750540:CDS | 50.0% | |
TGGGATTGATACCTGGATGG+TGG | + | chr5_2:3983879-3983898 | Msa0750540:CDS | 50.0% | |
GGGATTGATACCTGGATGGT+GGG | + | chr5_2:3983880-3983899 | Msa0750540:CDS | 50.0% | |
! | TGAGTTTTCTCCCACCATCC+AGG | - | chr5_2:3983893-3983912 | None:intergenic | 50.0% |
TGTTGCTCTAACGGTAGCTG+CGG | + | chr5_2:3983962-3983981 | Msa0750540:CDS | 50.0% | |
! | GCCAAGGCGACTGAAGATTT+TGG | + | chr5_2:3983989-3984008 | Msa0750540:CDS | 50.0% |
AAAAGCCTAGTCGTCCTGCT+AGG | + | chr5_2:3984074-3984093 | Msa0750540:CDS | 50.0% | |
CGTTGAGAAGTGGGTCGTTG+AGG | - | chr5_2:3982860-3982879 | None:intergenic | 55.0% | |
! | GAGATTGCGGCGTTGAGAAG+TGG | - | chr5_2:3982870-3982889 | None:intergenic | 55.0% |
ACAGTGAGTTACACCGGCGA+AGG | - | chr5_2:3983030-3983049 | None:intergenic | 55.0% | |
! | TTTAGGGTGTACTGCGCCGA+AGG | + | chr5_2:3983394-3983413 | Msa0750540:CDS | 55.0% |
AAGCGAAGGAGGCGAGGAAT+TGG | + | chr5_2:3983609-3983628 | Msa0750540:CDS | 55.0% | |
AGCGAAGGAGGCGAGGAATT+GGG | + | chr5_2:3983610-3983629 | Msa0750540:CDS | 55.0% | |
GTTGCTCTAACGGTAGCTGC+GGG | + | chr5_2:3983963-3983982 | Msa0750540:CDS | 55.0% | |
TTGCTCTAACGGTAGCTGCG+GGG | + | chr5_2:3983964-3983983 | Msa0750540:CDS | 55.0% | |
ATGCTCAAGATGGAGGGGAG+TGG | + | chr5_2:3984035-3984054 | Msa0750540:CDS | 55.0% | |
CGTTGAGAAGTGGGTCGTTG+AGG | - | chr5_2:3982860-3982879 | None:intergenic | 55.0% | |
! | GAGATTGCGGCGTTGAGAAG+TGG | - | chr5_2:3982870-3982889 | None:intergenic | 55.0% |
ACAGTGAGTTACACCGGCGA+AGG | - | chr5_2:3983030-3983049 | None:intergenic | 55.0% | |
! | TTTAGGGTGTACTGCGCCGA+AGG | + | chr5_2:3983394-3983413 | Msa0750540:CDS | 55.0% |
AAGCGAAGGAGGCGAGGAAT+TGG | + | chr5_2:3983609-3983628 | Msa0750540:CDS | 55.0% | |
AGCGAAGGAGGCGAGGAATT+GGG | + | chr5_2:3983610-3983629 | Msa0750540:CDS | 55.0% | |
GTTGCTCTAACGGTAGCTGC+GGG | + | chr5_2:3983963-3983982 | Msa0750540:CDS | 55.0% | |
TTGCTCTAACGGTAGCTGCG+GGG | + | chr5_2:3983964-3983983 | Msa0750540:CDS | 55.0% | |
ATGCTCAAGATGGAGGGGAG+TGG | + | chr5_2:3984035-3984054 | Msa0750540:CDS | 55.0% | |
TGCGTTTAGCGGCGGTGGAA+CGG | - | chr5_2:3982944-3982963 | None:intergenic | 60.0% | |
AGCTATGCGTTTAGCGGCGG+TGG | - | chr5_2:3982949-3982968 | None:intergenic | 60.0% | |
GTGAGTTACACCGGCGAAGG+TGG | - | chr5_2:3983027-3983046 | None:intergenic | 60.0% | |
GCAGACAACGGCTTCGACTG+CGG | - | chr5_2:3983365-3983384 | None:intergenic | 60.0% | |
CAGTCGAAGCCGTTGTCTGC+TGG | + | chr5_2:3983365-3983384 | Msa0750540:CDS | 60.0% | |
GCCGAAGGTGGGGAAAGAGT+TGG | + | chr5_2:3983409-3983428 | Msa0750540:CDS | 60.0% | |
GCGAAGGAGGCGAGGAATTG+GGG | + | chr5_2:3983611-3983630 | Msa0750540:CDS | 60.0% | |
TGCGTTTAGCGGCGGTGGAA+CGG | - | chr5_2:3982944-3982963 | None:intergenic | 60.0% | |
AGCTATGCGTTTAGCGGCGG+TGG | - | chr5_2:3982949-3982968 | None:intergenic | 60.0% | |
GTGAGTTACACCGGCGAAGG+TGG | - | chr5_2:3983027-3983046 | None:intergenic | 60.0% | |
GCAGACAACGGCTTCGACTG+CGG | - | chr5_2:3983365-3983384 | None:intergenic | 60.0% | |
CAGTCGAAGCCGTTGTCTGC+TGG | + | chr5_2:3983365-3983384 | Msa0750540:CDS | 60.0% | |
GCCGAAGGTGGGGAAAGAGT+TGG | + | chr5_2:3983409-3983428 | Msa0750540:CDS | 60.0% | |
GCGAAGGAGGCGAGGAATTG+GGG | + | chr5_2:3983611-3983630 | Msa0750540:CDS | 60.0% | |
AGGGTGTACTGCGCCGAAGG+TGG | + | chr5_2:3983397-3983416 | Msa0750540:CDS | 65.0% | |
GGGTGTACTGCGCCGAAGGT+GGG | + | chr5_2:3983398-3983417 | Msa0750540:CDS | 65.0% | |
GGTGTACTGCGCCGAAGGTG+GGG | + | chr5_2:3983399-3983418 | Msa0750540:CDS | 65.0% | |
AGGGTGTACTGCGCCGAAGG+TGG | + | chr5_2:3983397-3983416 | Msa0750540:CDS | 65.0% | |
GGGTGTACTGCGCCGAAGGT+GGG | + | chr5_2:3983398-3983417 | Msa0750540:CDS | 65.0% | |
GGTGTACTGCGCCGAAGGTG+GGG | + | chr5_2:3983399-3983418 | Msa0750540:CDS | 65.0% | |
CGGTAGCTGCGGGGATGCCA+AGG | + | chr5_2:3983973-3983992 | Msa0750540:CDS | 70.0% | |
CGGTAGCTGCGGGGATGCCA+AGG | + | chr5_2:3983973-3983992 | Msa0750540:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 3982750 | 3984141 | 3982750 | ID=Msa0750540;Name=Msa0750540 |
chr5_2 | mRNA | 3982750 | 3984141 | 3982750 | ID=Msa0750540-mRNA-1;Parent=Msa0750540;Name=Msa0750540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|463 |
chr5_2 | exon | 3982750 | 3984141 | 3982750 | ID=Msa0750540-mRNA-1:exon:1465;Parent=Msa0750540-mRNA-1 |
chr5_2 | CDS | 3982750 | 3984141 | 3982750 | ID=Msa0750540-mRNA-1:cds;Parent=Msa0750540-mRNA-1 |
Gene Sequence |
Protein sequence |