AlfalfaGEDB | Msa1080270

M. sativa cultivar zhongmu-4 / Msa1080270

KEGG: K14400|K14510
GO: GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080270	XP_024625845.1	97.881	236	3	1	1	234	614	849	1.19e-165	489

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080270	sp\|Q0WPF2\|PCFS4_ARATH	37.647	170	92	4	58	219	625	788	1.13e-33	131

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080270	A0A072U4Q6	97.881	236	3	1	1	234	793	1028	5.65e-164	489

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TFs/TRs:

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Gene ID	Type	Classification
Msa1080270	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1080270	0.814884	1.227405e-51	-8.615850e-47
Msa0003220	Msa1080270	0.809682	1.676910e-50	-8.615850e-47
Msa0003890	Msa1080270	0.817879	2.622064e-52	-8.615850e-47
Msa0004840	Msa1080270	0.819632	1.048930e-52	-8.615850e-47
Msa0005270	Msa1080270	0.814469	1.516301e-51	-8.615850e-47
Msa0006110	Msa1080270	0.835327	1.789665e-56	-8.615850e-47
Msa0007440	Msa1080270	0.823711	1.195457e-53	-8.615850e-47
Msa0010110	Msa1080270	0.806253	8.996900e-50	-8.615850e-47
Msa0010770	Msa1080270	0.820056	8.389206e-53	-8.615850e-47
Msa0011960	Msa1080270	0.816088	6.621920e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080270	MtrunA17_Chr7g0265781	97.881	236	3	1	1	234	793	1028	1.09e-167	489
Msa1080270	MtrunA17_Chr1g0179281	61.925	239	83	4	2	234	785	1021	1.68e-96	303
Msa1080270	MtrunA17_Chr6g0452881	34.392	189	116	5	40	224	632	816	1.28e-33	127
Msa1080270	MtrunA17_Chr4g0037071	32.620	187	120	4	42	224	2	186	7.36e-31	114
Msa1080270	MtrunA17_Chr6g0452891	37.931	145	74	6	86	221	80	217	2.43e-23	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080270	AT2G36480.2	40.930	215	120	3	11	225	741	948	2.03e-48	171
Msa1080270	AT2G36480.1	40.930	215	120	3	11	225	741	948	2.03e-48	171
Msa1080270	AT4G04885.1	37.647	170	92	4	58	219	625	788	1.15e-34	131
Msa1080270	AT1G66500.1	32.184	174	98	6	58	222	227	389	1.30e-23	98.2
Msa1080270	AT5G43620.1	32.370	173	100	5	58	222	220	383	6.52e-23	96.3

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Find 274 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCTCAACATTTGGG+TGG	0.617967	7_2:-79674455	Msa1080270:five_prime_UTR
AAAACCTCAGCAACAGCAGC+TGG	0.418357	7_2:-79674306	Msa1080270:five_prime_UTR
AAAAGAAAATCAAAGGAGTG+GGG	0.638637	7_2:+79672549	None:intergenic
AAAATTTGAAATTGGATTCA+AGG	0.374806	7_2:+79673873	None:intergenic
AAACAACTACCATCATCTGG+GGG	0.664219	7_2:-79674812	Msa1080270:five_prime_UTR
AAACCTCAGCAACAGCAGCT+GGG	0.621875	7_2:-79674305	Msa1080270:five_prime_UTR
AAACTACCGCAAGGGAAGGC+TGG	0.484966	7_2:-79673985	Msa1080270:five_prime_UTR
AAAGAAAATCAAAGGAGTGG+GGG	0.618293	7_2:+79672550	None:intergenic
AAAGAAGTTGCTAAAGATAA+CGG	0.508160	7_2:+79674335	None:intergenic
AAAGATGCCTCATACTTGAA+TGG	0.503245	7_2:+79677219	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATTGTTAAGAATATTGGG+CGG	-	chr7_2:79672344-79672363	Msa1080270:three_prime_UTR	30.0%
TATTGTTAAGAATATTGGGC+GGG	-	chr7_2:79672345-79672364	Msa1080270:three_prime_UTR	30.0%
TCTATCATCTTTCCTTCTAT+TGG	-	chr7_2:79672414-79672433	Msa1080270:intron	30.0%
ATCATCTAACCGTCAATAAA+TGG	-	chr7_2:79672599-79672618	Msa1080270:three_prime_UTR	30.0%
GCAGAATACCTAAAATGTAA+AGG	+	chr7_2:79672703-79672722	None:intergenic	30.0%
CGTTGCCTTTCTAAATATTT+GGG	+	chr7_2:79672933-79672952	None:intergenic	30.0%
ACGTTGCCTTTCTAAATATT+TGG	+	chr7_2:79672934-79672953	None:intergenic	30.0%
AATCTGTTGCATTAAAGGAT+TGG	+	chr7_2:79672996-79673015	None:intergenic	30.0%
GTGTTCCTTGAATAATGAAA+CGG	-	chr7_2:79673071-79673090	Msa1080270:intron	30.0%
AGAATTAAGTACCAGAGATA+GGG	+	chr7_2:79673570-79673589	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	79672281	79677712	79672281	ID=Msa1080270;Name=Msa1080270
chr7_2	mRNA	79672281	79677712	79672281	ID=Msa1080270-mRNA-1;Parent=Msa1080270;Name=Msa1080270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2005\|1\|1\|1\|0.66\|0.42\|7\|604\|234
chr7_2	exon	79672281	79672430	79672281	ID=Msa1080270-mRNA-1:exon:20046;Parent=Msa1080270-mRNA-1
chr7_2	exon	79672521	79672986	79672521	ID=Msa1080270-mRNA-1:exon:20045;Parent=Msa1080270-mRNA-1
chr7_2	exon	79673107	79674906	79673107	ID=Msa1080270-mRNA-1:exon:20044;Parent=Msa1080270-mRNA-1
chr7_2	exon	79675772	79676170	79675772	ID=Msa1080270-mRNA-1:exon:20043;Parent=Msa1080270-mRNA-1
chr7_2	exon	79676254	79676373	79676254	ID=Msa1080270-mRNA-1:exon:20042;Parent=Msa1080270-mRNA-1
chr7_2	exon	79677022	79677279	79677022	ID=Msa1080270-mRNA-1:exon:20041;Parent=Msa1080270-mRNA-1
chr7_2	exon	79677592	79677712	79677592	ID=Msa1080270-mRNA-1:exon:20040;Parent=Msa1080270-mRNA-1
chr7_2	five_prime_UTR	79677592	79677712	79677592	ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	five_prime_UTR	79677022	79677279	79677022	ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	five_prime_UTR	79676254	79676373	79676254	ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	five_prime_UTR	79675772	79676170	79675772	ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	five_prime_UTR	79673800	79674906	79673800	ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	CDS	79673107	79673799	79673107	ID=Msa1080270-mRNA-1:cds;Parent=Msa1080270-mRNA-1
chr7_2	CDS	79672975	79672986	79672975	ID=Msa1080270-mRNA-1:cds;Parent=Msa1080270-mRNA-1
chr7_2	three_prime_UTR	79672521	79672974	79672521	ID=Msa1080270-mRNA-1:three_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2	three_prime_UTR	79672281	79672430	79672281	ID=Msa1080270-mRNA-1:three_prime_utr;Parent=Msa1080270-mRNA-1

Gene Sequence

>Msa1080270

ATGCGATCGAAAGACCAAACTGAAAGCATTGCTGTCAGTTCCTCTTTACCAGTTGCTTCAGTTCCTGTTTCTTCAGCTGTCCCAGTAAAATCTTCCAGAATTGAGGCAGATGATGCTGCAAAGGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTCATTCGAGAAATGCACCCACATGTAATCGAAGAATTATTGGATGAACTCCCACATCATTGCGGTGATTGTGGTATTAGGCTTAAACAACAAGAACAGTTTAATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTGTAGCATCAAGAAGATGGTATGCAACATCAGATGACTGGATTGCTGGCAAGGCAGAATGTCTGTCTGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGATAATAAAACAGACGGGAGTCAATTGGACACTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACGAGTGGATGTTCAAGGGGGCTGTATACCTGAACAATCCAGATAGCGAGATGGAAAGTAGAAATGTGGGGCCCATCATTCATGCTAGATGCTTGTCAGATAACTCAATACTTGGTGTGACTAATACAGAACATGATTGA

Protein sequence

>Msa1080270

MRSKDQTESIAVSSSLPVASVPVSSAVPVKSSRIEADDAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKEREQNGLIVASRRWYATSDDWIAGKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPDSEMESRNVGPIIHARCLSDNSILGVTNTEHD*