AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080270 MtrunA17_Chr7g0265781 97.881 236 3 1 1 234 793 1028 1.09e-167 489
Msa1080270 MtrunA17_Chr1g0179281 61.925 239 83 4 2 234 785 1021 1.68e-96 303
Msa1080270 MtrunA17_Chr6g0452881 34.392 189 116 5 40 224 632 816 1.28e-33 127
Msa1080270 MtrunA17_Chr4g0037071 32.620 187 120 4 42 224 2 186 7.36e-31 114
Msa1080270 MtrunA17_Chr6g0452891 37.931 145 74 6 86 221 80 217 2.43e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080270 AT2G36480.2 40.930 215 120 3 11 225 741 948 2.03e-48 171
Msa1080270 AT2G36480.1 40.930 215 120 3 11 225 741 948 2.03e-48 171
Msa1080270 AT4G04885.1 37.647 170 92 4 58 219 625 788 1.15e-34 131
Msa1080270 AT1G66500.1 32.184 174 98 6 58 222 227 389 1.30e-23 98.2
Msa1080270 AT5G43620.1 32.370 173 100 5 58 222 220 383 6.52e-23 96.3

Find 274 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTCGTAATTGATTTAT+TGG 0.107243 7_2:+79674146 None:intergenic
ACGTTGCCTTTCTAAATATT+TGG 0.133248 7_2:+79677040 None:intergenic
TTGCTGCTGTCCCGTAATTT+TGG 0.160595 7_2:+79674613 None:intergenic
GACAGTATTGTTAAGAATAT+TGG 0.166316 7_2:-79677631 Msa1080270:five_prime_UTR
TGTCAAATCTACACATTCTT+TGG 0.193122 7_2:-79672527 Msa1080270:three_prime_UTR
AGCTGCTGTTGCTGAGGTTT+TGG 0.194493 7_2:+79674308 None:intergenic
TGGATTCAAGGTATTCTTAT+TGG 0.211269 7_2:+79673885 None:intergenic
CCCTCCTTCGATGCGTAATT+TGG 0.215915 7_2:-79674504 Msa1080270:five_prime_UTR
ACGAGCTTAAAATTTGAAAT+TGG 0.217586 7_2:+79673865 None:intergenic
ACCTGGCTTCATATTCAATT+TGG 0.235053 7_2:+79674745 None:intergenic
TTTATGCAGCTGATAAATTA+AGG 0.237610 7_2:+79672358 None:intergenic
ACATGTAATCGAAGAATTAT+TGG 0.248282 7_2:-79673562 Msa1080270:CDS
TTCTAGTGTTTCAAATAGTT+TGG 0.249454 7_2:-79676062 Msa1080270:five_prime_UTR
TCTTAAAACATCTCAACATT+TGG 0.272228 7_2:-79674459 Msa1080270:five_prime_UTR
TTATTAACCTTTGTTCCAAT+TGG 0.272469 7_2:+79674854 None:intergenic
CCCGACCACATTAATTTCTT+CGG 0.274359 7_2:-79674061 Msa1080270:five_prime_UTR
CTACTTTCCATCTCGCTATC+TGG 0.283979 7_2:+79673174 None:intergenic
AGTAACTGTCCATCTCAAAT+AGG 0.286697 7_2:-79674114 Msa1080270:five_prime_UTR
CGTTGCCTTTCTAAATATTT+GGG 0.287620 7_2:+79677041 None:intergenic
CCGACCACATTAATTTCTTC+GGG 0.290620 7_2:-79674060 Msa1080270:five_prime_UTR
TGCCATTCGTTCCAATGTTC+AGG 0.291207 7_2:-79674399 Msa1080270:five_prime_UTR
GCCTTCCCTTGCGGTAGTTT+TGG 0.294785 7_2:+79673988 None:intergenic
AGCACCGAAGTCTGTGAATT+TGG 0.302197 7_2:-79675933 Msa1080270:five_prime_UTR
ACAGTATTGTTAAGAATATT+GGG 0.313571 7_2:-79677630 Msa1080270:five_prime_UTR
GGAGGGTTGCGTATTGTTAC+TGG 0.318530 7_2:+79674521 None:intergenic
AATTATGTTAATGACTTTCC+AGG 0.320564 7_2:-79677692 Msa1080270:five_prime_UTR
GGGTACCCTTGATAAGCTTC+TGG 0.325665 7_2:+79672917 None:intergenic
GAGACTGAGAATCACTTCTA+AGG 0.328918 7_2:+79677093 None:intergenic
TTCCAATTGGGTGTGTGATT+TGG 0.329546 7_2:+79674867 None:intergenic
ATTGCGGTGATTGTGGTATT+AGG 0.330585 7_2:-79673524 Msa1080270:CDS
AATAGGAATGTCCAAAATTA+CGG 0.342563 7_2:-79674624 Msa1080270:five_prime_UTR
GTCAAATCTACACATTCTTT+GGG 0.348201 7_2:-79672526 Msa1080270:three_prime_UTR
TATTAACCTTTGTTCCAATT+GGG 0.351939 7_2:+79674855 None:intergenic
TAAAGGAGTATTTGATGATA+TGG 0.354621 7_2:-79676349 Msa1080270:five_prime_UTR
GATGGCCGATGAAGACAATT+TGG 0.356986 7_2:-79675771 Msa1080270:intron
ACCATTTCTTTGCCCGGATA+AGG 0.361597 7_2:+79675988 None:intergenic
GTTTCAAATAGTTTGGGTTC+AGG 0.366649 7_2:-79676055 Msa1080270:five_prime_UTR
ATATTTGTTTCTGCTCCTAA+TGG 0.366883 7_2:-79674713 Msa1080270:five_prime_UTR
GATAAAGCGAAGGCAGCTTT+TGG 0.368771 7_2:+79677659 None:intergenic
GAATGCTTGGGTAAGCCATT+AGG 0.372033 7_2:+79674698 None:intergenic
GGTGTTGCAGAGACCTTATC+CGG 0.374381 7_2:-79676001 Msa1080270:five_prime_UTR
AAAATTTGAAATTGGATTCA+AGG 0.374806 7_2:+79673873 None:intergenic
AGCCGAAGAATTTGAATGCT+TGG 0.380657 7_2:+79674685 None:intergenic
CTTAAAACATCTCAACATTT+GGG 0.380724 7_2:-79674458 Msa1080270:five_prime_UTR
ATTGGAACAAAGGTTAATAA+AGG 0.381415 7_2:-79674851 Msa1080270:five_prime_UTR
GGGTGCTGCACGTCCATGGC+TGG 0.382360 7_2:-79676274 Msa1080270:five_prime_UTR
TCTAGTGTTTCAAATAGTTT+GGG 0.389260 7_2:-79676061 Msa1080270:five_prime_UTR
CAAAATTTGTTTGACTGCTT+AGG 0.389354 7_2:+79672828 None:intergenic
AGCATCATCTGCCTCAATTC+TGG 0.390784 7_2:+79673683 None:intergenic
AGCTGATGCACCGCGATTGT+TGG 0.393455 7_2:+79673924 None:intergenic
ACCCAAGCATTCAAATTCTT+CGG 0.397635 7_2:-79674687 Msa1080270:five_prime_UTR
TGACAGCAATGCTTTCAGTT+TGG 0.399143 7_2:+79673763 None:intergenic
GCATAATATTATCCGCCGTT+TGG 0.399325 7_2:+79672601 None:intergenic
AAGAAACAACTACCATCATC+TGG 0.401863 7_2:-79674815 Msa1080270:five_prime_UTR
GTCACTTTGGCTTTGACTAA+AGG 0.406869 7_2:+79674227 None:intergenic
GAGAGGCCAGATCGAGCTTT+GGG 0.416284 7_2:-79676294 Msa1080270:five_prime_UTR
TCTATGCCGCATACAACAAT+AGG 0.416550 7_2:-79674641 Msa1080270:five_prime_UTR
ATTTGCATATTTAACACCTA+TGG 0.416585 7_2:-79672667 Msa1080270:three_prime_UTR
TTTAACACCTATGGGGATAC+CGG 0.416971 7_2:-79672658 Msa1080270:three_prime_UTR
AAAACCTCAGCAACAGCAGC+TGG 0.418357 7_2:-79674306 Msa1080270:five_prime_UTR
ACTGGGACAGCTGAAGAAAC+AGG 0.419209 7_2:+79673714 None:intergenic
AGAGAGGCCAGATCGAGCTT+TGG 0.423688 7_2:-79676295 Msa1080270:five_prime_UTR
ACAAAAGAAAGAGAACAAAA+TGG 0.424354 7_2:-79673456 Msa1080270:CDS
TAAATCAATTACGAGAAGTC+TGG 0.426887 7_2:-79674142 Msa1080270:five_prime_UTR
CAATTGGGTGTGTGATTTGG+AGG 0.427496 7_2:+79674870 None:intergenic
TAAAACAGACGGGAGTCAAT+TGG 0.428390 7_2:-79673319 Msa1080270:CDS
ATTCATAACTTGTATTGCAT+TGG 0.428430 7_2:-79672953 Msa1080270:three_prime_UTR
CCGAAGAAATTAATGTGGTC+GGG 0.430521 7_2:+79674061 None:intergenic
ACCTTATCCGGGCAAAGAAA+TGG 0.430710 7_2:-79675989 Msa1080270:five_prime_UTR
TCTCGCTATCTGGATTGTTC+AGG 0.430835 7_2:+79673184 None:intergenic
CTCCAAATCACACACCCAAT+TGG 0.432800 7_2:-79674869 Msa1080270:five_prime_UTR
TGCATTTCTCGAATGACATC+AGG 0.434562 7_2:+79673588 None:intergenic
GCCGAAGAATTTGAATGCTT+GGG 0.436198 7_2:+79674686 None:intergenic
TTCATATTCAATTTGGCACT+TGG 0.438918 7_2:+79674752 None:intergenic
GGGTTTAAGCCTACTCGGTC+AGG 0.439200 7_2:-79674093 Msa1080270:five_prime_UTR
GTAACTGTCCATCTCAAATA+GGG 0.440250 7_2:-79674113 Msa1080270:five_prime_UTR
CGATTGTTGGAGGAAGTAGA+TGG 0.441441 7_2:+79673937 None:intergenic
CGTTGCATACTAAAACTAGA+TGG 0.443364 7_2:-79672887 Msa1080270:three_prime_UTR
ACATCAGATGACTGGATTGC+TGG 0.443441 7_2:-79673402 Msa1080270:CDS
TTTAGTATGCAACGAGAACC+TGG 0.444406 7_2:+79672896 None:intergenic
GGTTCAGGTGTTGGAAGAAC+CGG 0.446940 7_2:-79676040 Msa1080270:five_prime_UTR
AAGAGCATCGGCGGAGCCTA+TGG 0.447109 7_2:-79676100 Msa1080270:five_prime_UTR
GCAGTGCAATGTCAAAGAAC+TGG 0.449666 7_2:-79675892 Msa1080270:five_prime_UTR
CACGTCCATGGCTGGATCCT+AGG 0.451919 7_2:-79676266 Msa1080270:five_prime_UTR
CTTTGGGTGCTGCACGTCCA+TGG 0.452816 7_2:-79676278 Msa1080270:five_prime_UTR
GCAGCACCCAAAGCTCGATC+TGG 0.453817 7_2:+79676288 None:intergenic
AGAGTAGGTGAATAATCATT+TGG 0.453893 7_2:+79674012 None:intergenic
GTAGCATAGCGCACAACATT+TGG 0.454690 7_2:+79672283 None:intergenic
CTCAAGTTGTTAGAGACATT+AGG 0.457050 7_2:+79675806 None:intergenic
AATCATTTCACCTACCCTGC+TGG 0.462666 7_2:+79677007 None:intergenic
TTTGCATATTTAACACCTAT+GGG 0.466087 7_2:-79672666 Msa1080270:three_prime_UTR
AACGTCTTCAGCAGTCCAGC+AGG 0.469296 7_2:-79677022 Msa1080270:five_prime_UTR
AGAGGAGTTCATGTGGGATG+AGG 0.471007 7_2:-79675855 Msa1080270:five_prime_UTR
CTTGTATTGCATTGGAGCCA+AGG 0.471717 7_2:-79672945 Msa1080270:three_prime_UTR
AACTTCAATCCCGCGGTCAA+TGG 0.473692 7_2:-79677137 Msa1080270:five_prime_UTR
ACAGAAATTAGAAATCTCAT+TGG 0.476065 7_2:-79673624 Msa1080270:CDS
ATAAGCTTCTGGCTTAACCT+TGG 0.478038 7_2:+79672928 None:intergenic
CTCCTGTCCATTCAAGTATG+AGG 0.480383 7_2:-79677226 Msa1080270:five_prime_UTR
ATCACAAGAGAAGGATATGC+GGG 0.481020 7_2:-79674360 Msa1080270:five_prime_UTR
AATAGTTTGGGTTCAGGTGT+TGG 0.482447 7_2:-79676049 Msa1080270:five_prime_UTR
AAACTACCGCAAGGGAAGGC+TGG 0.484966 7_2:-79673985 Msa1080270:five_prime_UTR
TTGTCTTCATCGGCCATCCA+TGG 0.488246 7_2:+79675776 None:intergenic
ACAAAAGAAAATCAAAGGAG+TGG 0.488685 7_2:+79672547 None:intergenic
CACAACATTTGGTCAAATGT+TGG 0.491776 7_2:+79672294 None:intergenic
TGAATCCCAAATATTTAGAA+AGG 0.497212 7_2:-79677046 Msa1080270:five_prime_UTR
GAAACAGGAACTGAAGCAAC+TGG 0.498254 7_2:+79673729 None:intergenic
AAGGGACGAGTGGATGTTCA+AGG 0.500865 7_2:-79673217 Msa1080270:CDS
AGATGACTGGATTGCTGGCA+AGG 0.501201 7_2:-79673397 Msa1080270:CDS
AAAGATGCCTCATACTTGAA+TGG 0.503245 7_2:+79677219 None:intergenic
ACAGCAGCTGGGTTCTTCAC+AGG 0.503314 7_2:-79674294 Msa1080270:five_prime_UTR
ATAGGAATGTCCAAAATTAC+GGG 0.506569 7_2:-79674623 Msa1080270:five_prime_UTR
CGTATTGTTACTGGCACTGT+TGG 0.506761 7_2:+79674530 None:intergenic
CGGGAGTCAATTGGACACTA+TGG 0.507853 7_2:-79673310 Msa1080270:CDS
GCTGAAACCATTTCTTTGCC+CGG 0.508129 7_2:+79675982 None:intergenic
AAAGAAGTTGCTAAAGATAA+CGG 0.508160 7_2:+79674335 None:intergenic
AACTGAAGCAACTGGTAAAG+AGG 0.508176 7_2:+79673737 None:intergenic
CTAAATATTTGGGATTCACA+TGG 0.508383 7_2:+79677051 None:intergenic
GTTAAGCCAGAAGCTTATCA+AGG 0.511104 7_2:-79672923 Msa1080270:three_prime_UTR
GCCAAATTGAATATGAAGCC+AGG 0.515735 7_2:-79674746 Msa1080270:five_prime_UTR
TCATATTCAATTTGGCACTT+GGG 0.516765 7_2:+79674753 None:intergenic
GGCTTAAACCCTATTTGAGA+TGG 0.516828 7_2:+79674105 None:intergenic
ACCGCCAATGAGCCTACTTC+CGG 0.517406 7_2:+79676021 None:intergenic
ATCATGGGAGTTGCAGAAGC+AGG 0.518761 7_2:-79674777 Msa1080270:five_prime_UTR
CAAGTTACCAACCTGAACAT+TGG 0.518895 7_2:+79674388 None:intergenic
ATTTGAAGATGTATACTGTC+AGG 0.519071 7_2:-79673241 Msa1080270:CDS
TCTACACATTCTTTGGGATA+GGG 0.519142 7_2:-79672520 Msa1080270:intron
AGTAAAATCTTCCAGAATTG+AGG 0.520874 7_2:-79673694 Msa1080270:CDS
GGAGTATTTGATGATATGGC+TGG 0.521125 7_2:-79676345 Msa1080270:five_prime_UTR
TTAACACCTATGGGGATACC+GGG 0.521435 7_2:-79672657 Msa1080270:three_prime_UTR
CAAAAGAAAATCAAAGGAGT+GGG 0.522899 7_2:+79672548 None:intergenic
GATCGCATCACCGTCTCACT+TGG 0.525025 7_2:+79673792 None:intergenic
TGATGCACCGCGATTGTTGG+AGG 0.525881 7_2:+79673927 None:intergenic
GAAATTAATGTGGTCGGGGA+AGG 0.526098 7_2:+79674066 None:intergenic
CCACATCATTGCGGTGATTG+TGG 0.527976 7_2:-79673531 Msa1080270:CDS
AGAACCGGAAGTAGGCTCAT+TGG 0.529221 7_2:-79676025 Msa1080270:five_prime_UTR
CACACAATACACACAAGCAT+TGG 0.529437 7_2:+79673271 None:intergenic
GCCAAATTACGCATCGAAGG+AGG 0.530494 7_2:+79674503 None:intergenic
ATTGGAACGAATGGCAGGCA+CGG 0.530926 7_2:+79674406 None:intergenic
CCCGAAGAAATTAATGTGGT+CGG 0.531341 7_2:+79674060 None:intergenic
CCACTCTTCACAGATGGAGC+TGG 0.531578 7_2:+79674176 None:intergenic
GCTTACCAAATTGTCTTCAT+CGG 0.532183 7_2:+79675766 None:intergenic
ATTCAAGGTATTCTTATTGG+CGG 0.532457 7_2:+79673888 None:intergenic
ATTTGGATGCACATAGCATA+AGG 0.533715 7_2:-79675916 Msa1080270:five_prime_UTR
ACTGCTTAGGAAAGCAGCTA+AGG 0.533771 7_2:+79672841 None:intergenic
TTATTGGCGGTATTTGAGCT+CGG 0.534346 7_2:+79673901 None:intergenic
GCGAAAGGTTTGATATCCGC+AGG 0.535645 7_2:-79673837 Msa1080270:five_prime_UTR
CAAGCATCTAGCATGAATGA+TGG 0.535680 7_2:+79673140 None:intergenic
GGTATGCAACATCAGATGAC+TGG 0.539121 7_2:-79673410 Msa1080270:CDS
ACAGCAGCAATTTGATTCTG+AGG 0.540664 7_2:-79674600 Msa1080270:five_prime_UTR
ATCTACACATTCTTTGGGAT+AGG 0.541739 7_2:-79672521 Msa1080270:three_prime_UTR
AACACCTATGGGGATACCGG+GGG 0.542948 7_2:-79672655 Msa1080270:three_prime_UTR
AGAAACAACTACCATCATCT+GGG 0.543785 7_2:-79674814 Msa1080270:five_prime_UTR
TTCACATGGATGCTATGAGA+TGG 0.547527 7_2:+79677065 None:intergenic
AATAATTCTTCGATTACATG+TGG 0.547916 7_2:+79673564 None:intergenic
TGTCTTCATCGGCCATCCAT+GGG 0.548954 7_2:+79675777 None:intergenic
TTAAGCTCGTTAGTTGCGAA+AGG 0.551333 7_2:-79673852 Msa1080270:five_prime_UTR
ATTATATCCATCGTCTCCAT+AGG 0.554348 7_2:+79676084 None:intergenic
CAAGGTCATCTTCATCCAAA+CGG 0.554505 7_2:-79672616 Msa1080270:three_prime_UTR
TGAACATTGGAACGAATGGC+AGG 0.555403 7_2:+79674401 None:intergenic
AATAATCAGCATACTCATAG+AGG 0.555522 7_2:-79676148 Msa1080270:five_prime_UTR
AGATGTATACTGTCAGGAAA+GGG 0.555729 7_2:-79673235 Msa1080270:CDS
GACATTCCTATTGTTGTATG+CGG 0.557470 7_2:+79674635 None:intergenic
AAGGTGAAGACTGTTCTGAA+GGG 0.558749 7_2:+79674567 None:intergenic
AACCTGAACATTGGAACGAA+TGG 0.559123 7_2:+79674397 None:intergenic
AAAGGTGAAGACTGTTCTGA+AGG 0.560794 7_2:+79674566 None:intergenic
CAGCAGCAATTTGATTCTGA+GGG 0.562116 7_2:-79674599 Msa1080270:five_prime_UTR
TATGATGATAATAAAACAGA+CGG 0.562220 7_2:-79673330 Msa1080270:CDS
CCAAATTACGCATCGAAGGA+GGG 0.563230 7_2:+79674504 None:intergenic
ATGATTCCACTCTTCACAGA+TGG 0.563534 7_2:+79674170 None:intergenic
TTGGAACGAATGGCAGGCAC+GGG 0.563880 7_2:+79674407 None:intergenic
TGATTGTAGCATCAAGAAGA+TGG 0.565765 7_2:-79673431 Msa1080270:CDS
TGCCTCATACTTGAATGGAC+AGG 0.566930 7_2:+79677224 None:intergenic
CACACACCCAATTGGAACAA+AGG 0.567583 7_2:-79674861 Msa1080270:five_prime_UTR
TATTGTTAAGAATATTGGGC+GGG 0.568077 7_2:-79677626 Msa1080270:five_prime_UTR
CCACAATCACCGCAATGATG+TGG 0.571121 7_2:+79673531 None:intergenic
CGAAGAAATTAATGTGGTCG+GGG 0.572323 7_2:+79674062 None:intergenic
ATTCGTTCCAATGTTCAGGT+TGG 0.573224 7_2:-79674395 Msa1080270:five_prime_UTR
CGAGATGGAAAGTAGAAATG+TGG 0.573826 7_2:-79673166 Msa1080270:CDS
GCATCCAAATTCACAGACTT+CGG 0.574943 7_2:+79675929 None:intergenic
TTGTCAGATAACTCAATACT+TGG 0.575179 7_2:-79673120 Msa1080270:CDS
TGAGGCAGATGATGCTGCAA+AGG 0.575199 7_2:-79673676 Msa1080270:CDS
AGACTGAGAATCACTTCTAA+GGG 0.576385 7_2:+79677094 None:intergenic
TCACATGGATGCTATGAGAT+GGG 0.576495 7_2:+79677066 None:intergenic
CTTGCGAAAATCACAAGAGA+AGG 0.578295 7_2:-79674369 Msa1080270:five_prime_UTR
CACAATCACCGCAATGATGT+GGG 0.578357 7_2:+79673532 None:intergenic
AAAGGAGCTTTAGATTTGAG+TGG 0.579334 7_2:+79674245 None:intergenic
ACCGGAAGTAGGCTCATTGG+CGG 0.579906 7_2:-79676022 Msa1080270:five_prime_UTR
AAGCATCTAGCATGAATGAT+GGG 0.581668 7_2:+79673141 None:intergenic
AAGATGTATACTGTCAGGAA+AGG 0.582076 7_2:-79673236 Msa1080270:CDS
GAACCCAGCTGCTGTTGCTG+AGG 0.583698 7_2:+79674302 None:intergenic
GAAGGCTGGAAAGAAGCAAA+AGG 0.584037 7_2:-79673971 Msa1080270:five_prime_UTR
GGAGAACCTAGTGACGCGGC+GGG 0.584551 7_2:+79674033 None:intergenic
TGGTAGTTGTTTCTTAACAG+TGG 0.585131 7_2:+79674823 None:intergenic
GAGATGGAAAGTAGAAATGT+GGG 0.585552 7_2:-79673165 Msa1080270:CDS
ATGTGGGATGAGGTGAACCC+TGG 0.587853 7_2:-79675845 Msa1080270:five_prime_UTR
AGAACAGTTTAATAGACACT+TGG 0.587882 7_2:-79673490 Msa1080270:CDS
GGCGGAGCCTATGGAGACGA+TGG 0.591159 7_2:-79676091 Msa1080270:five_prime_UTR
ATTTGACAAAAGAAAATCAA+AGG 0.591890 7_2:+79672542 None:intergenic
GGGACGAGTGGATGTTCAAG+GGG 0.591895 7_2:-79673215 Msa1080270:CDS
GTGTTGGAAGAACCGGAAGT+AGG 0.595103 7_2:-79676033 Msa1080270:five_prime_UTR
ACAAATATTTCTGAGTGACC+TGG 0.595652 7_2:+79674728 None:intergenic
CATACATGCATGTTAAGCCT+AGG 0.595796 7_2:+79676249 None:intergenic
TCAATTATCTGAAGAGTCTG+AGG 0.595989 7_2:+79677170 None:intergenic
GACTCTTCAGATAATTGAGA+AGG 0.596715 7_2:-79677165 Msa1080270:five_prime_UTR
CGACCACATTAATTTCTTCG+GGG 0.597538 7_2:-79674059 Msa1080270:five_prime_UTR
TTCTTTCCAGCCTTCCCTTG+CGG 0.598633 7_2:+79673979 None:intergenic
AAATAGGGTTTAAGCCTACT+CGG 0.599873 7_2:-79674098 Msa1080270:five_prime_UTR
CCAGCTCCATCTGTGAAGAG+TGG 0.601958 7_2:-79674176 Msa1080270:five_prime_UTR
GAAGCTGAACCATTGACCGC+GGG 0.604224 7_2:+79677128 None:intergenic
GGTACATTATCAGACAAACC+AGG 0.604517 7_2:+79675827 None:intergenic
TAGGAAAGCAGCTAAGGCAA+TGG 0.605790 7_2:+79672847 None:intergenic
ATTCTGCAATACATACAGAC+AGG 0.606020 7_2:-79677255 Msa1080270:five_prime_UTR
ACAACTTGAGCTCAGACCCA+TGG 0.607186 7_2:-79675793 Msa1080270:five_prime_UTR
AGGGACGAGTGGATGTTCAA+GGG 0.609571 7_2:-79673216 Msa1080270:CDS
CTCTGCCAAAACTACCGCAA+GGG 0.611035 7_2:-79673993 Msa1080270:five_prime_UTR
GCCAAAACTACCGCAAGGGA+AGG 0.612070 7_2:-79673989 Msa1080270:five_prime_UTR
TCTGTTCCTGAAAAGAGCAT+CGG 0.616052 7_2:-79676112 Msa1080270:five_prime_UTR
ATGATGATAATAAAACAGAC+GGG 0.617056 7_2:-79673329 Msa1080270:CDS
CGGAGGAAGAGGAGTTCATG+TGG 0.617778 7_2:-79675862 Msa1080270:five_prime_UTR
AAAACATCTCAACATTTGGG+TGG 0.617967 7_2:-79674455 Msa1080270:five_prime_UTR
AAAGAAAATCAAAGGAGTGG+GGG 0.618293 7_2:+79672550 None:intergenic
GAAGCTTATCAAGGGTACCC+AGG 0.619064 7_2:-79672914 Msa1080270:three_prime_UTR
ACTCTGCCAAAACTACCGCA+AGG 0.619475 7_2:-79673994 Msa1080270:five_prime_UTR
AACTACAGTGCCAAGTGAGA+CGG 0.621357 7_2:-79673802 Msa1080270:five_prime_UTR
AGGTGAAGACTGTTCTGAAG+GGG 0.621418 7_2:+79674568 None:intergenic
AAACCTCAGCAACAGCAGCT+GGG 0.621875 7_2:-79674305 Msa1080270:five_prime_UTR
TTTAAGCCTACTCGGTCAGG+TGG 0.622249 7_2:-79674090 Msa1080270:five_prime_UTR
GTTGGAGACTGTTGTCGCAA+AGG 0.627501 7_2:+79674548 None:intergenic
GGGGCATTCATCATTATCAT+GGG 0.628071 7_2:-79674792 Msa1080270:five_prime_UTR
AGTTTAATAGACACTTGGAA+TGG 0.631756 7_2:-79673485 Msa1080270:CDS
TTAAGCCAGAAGCTTATCAA+GGG 0.633280 7_2:-79672922 Msa1080270:three_prime_UTR
GTTCCTGAAAAGAGCATCGG+CGG 0.634573 7_2:-79676109 Msa1080270:five_prime_UTR
GTGTTGCAGAGACCTTATCC+GGG 0.636826 7_2:-79676000 Msa1080270:five_prime_UTR
CTTGAGCTCAGACCCATGGA+TGG 0.637419 7_2:-79675789 Msa1080270:five_prime_UTR
AAAAGAAAATCAAAGGAGTG+GGG 0.638637 7_2:+79672549 None:intergenic
ATAATTCTTCGATTACATGT+GGG 0.641758 7_2:+79673565 None:intergenic
ATTATCTGAAGAGTCTGAGG+AGG 0.642000 7_2:+79677173 None:intergenic
TCAGCCAAATTACGCATCGA+AGG 0.643348 7_2:+79674500 None:intergenic
AATTAAGGAAAGCAATACAC+GGG 0.646592 7_2:+79672373 None:intergenic
ATTCAAATTCTTCGGCTGCG+AGG 0.650495 7_2:-79674679 Msa1080270:five_prime_UTR
TGATTGAGACAAGGCAAGCG+AGG 0.653277 7_2:+79673653 None:intergenic
GAAGGACCACCTGACCGAGT+AGG 0.653335 7_2:+79674084 None:intergenic
GAAACAACTACCATCATCTG+GGG 0.656842 7_2:-79674813 Msa1080270:five_prime_UTR
TTAGTATGCAACGAGAACCT+GGG 0.656890 7_2:+79672897 None:intergenic
TTGCATATTTAACACCTATG+GGG 0.659037 7_2:-79672665 Msa1080270:three_prime_UTR
TGTGCTAGTTGATTGAGACA+AGG 0.659929 7_2:+79673644 None:intergenic
GAACAATCCAGATAGCGAGA+TGG 0.661154 7_2:-79673181 Msa1080270:CDS
ACTGTCAGGAAAGGGACGAG+TGG 0.661605 7_2:-79673227 Msa1080270:CDS
AAATTAAGGAAAGCAATACA+CGG 0.662373 7_2:+79672372 None:intergenic
AAACAACTACCATCATCTGG+GGG 0.664219 7_2:-79674812 Msa1080270:five_prime_UTR
GGAGGAAGAGGAGTTCATGT+GGG 0.666115 7_2:-79675861 Msa1080270:five_prime_UTR
CTGTCTAAGAGATAAAGCGA+AGG 0.669079 7_2:+79677649 None:intergenic
AATCACAAGAGAAGGATATG+CGG 0.670294 7_2:-79674361 Msa1080270:five_prime_UTR
ATGCAAATGAAGACGCAGAG+AGG 0.671037 7_2:-79676311 Msa1080270:five_prime_UTR
AGTTGCTGACTCTGTTCCTG+CGG 0.676828 7_2:+79673821 None:intergenic
AGCAGCAATTTGATTCTGAG+GGG 0.679911 7_2:-79674598 Msa1080270:five_prime_UTR
TCTACTTCCTCCAACAATCG+CGG 0.682019 7_2:-79673934 Msa1080270:five_prime_UTR
ACGTCTTCAGCAGTCCAGCA+GGG 0.683190 7_2:-79677021 Msa1080270:intron
GTATTGTTAAGAATATTGGG+CGG 0.684810 7_2:-79677627 Msa1080270:five_prime_UTR
GTACATTATCAGACAAACCA+GGG 0.685272 7_2:+79675828 None:intergenic
AGAAGCTGAACCATTGACCG+CGG 0.688294 7_2:+79677127 None:intergenic
TGGAGAACCTAGTGACGCGG+CGG 0.688959 7_2:+79674032 None:intergenic
GATGAACTCCCACATCATTG+CGG 0.690002 7_2:-79673540 Msa1080270:CDS
TTAAGCCTAGGATCCAGCCA+TGG 0.699790 7_2:+79676261 None:intergenic
GGAACTCAACTTCAATCCCG+CGG 0.701859 7_2:-79677144 Msa1080270:five_prime_UTR
AGACCCCGAAGAAATTAATG+TGG 0.705849 7_2:+79674056 None:intergenic
AGATGGAAAGTAGAAATGTG+GGG 0.706843 7_2:-79673164 Msa1080270:CDS
GGACGAGTGGATGTTCAAGG+GGG 0.711357 7_2:-79673214 Msa1080270:CDS
GGTCATCTTCATCCAAACGG+CGG 0.713284 7_2:-79672613 Msa1080270:three_prime_UTR
CAATGCTTGTGTGTATTGTG+TGG 0.715495 7_2:-79673270 Msa1080270:CDS
TCACAAGAGAAGGATATGCG+GGG 0.724395 7_2:-79674359 Msa1080270:five_prime_UTR
ATTTGGAGAACCTAGTGACG+CGG 0.733407 7_2:+79674029 None:intergenic
AACAACTACCATCATCTGGG+GGG 0.742353 7_2:-79674811 Msa1080270:five_prime_UTR
ACTTTGCTGTCAGACTACCG+AGG 0.796316 7_2:-79677591 Msa1080270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTATTTGATGAAAT+TGG - chr7_2:79673034-79673053 Msa1080270:intron 10.0%
!! TTATTAGTAATTTCATTAAT+TGG + chr7_2:79674931-79674950 None:intergenic 10.0%
!!! CATATTTTAGATATCAAAAA+AGG - chr7_2:79673362-79673381 Msa1080270:CDS 15.0%
!!! TATAACTTGTCAAATTTTAA+AGG + chr7_2:79673512-79673531 None:intergenic 15.0%
!!! GTTATCATATTTTAATAGAA+TGG - chr7_2:79673788-79673807 Msa1080270:exon 15.0%
!!! TTTTTTAAGTCAACAAAATT+AGG + chr7_2:79674816-79674835 None:intergenic 15.0%
!!! TTGATAACTTTATTTTATGA+TGG - chr7_2:79677270-79677289 Msa1080270:intron 15.0%
!! ACAGTATTGTTAAGAATATT+GGG - chr7_2:79672341-79672360 Msa1080270:three_prime_UTR 20.0%
!! TGAAATGTTTAGATTTGATT+TGG - chr7_2:79672529-79672548 Msa1080270:three_prime_UTR 20.0%
!!! GTTAGATGATTCATTTTTTA+TGG + chr7_2:79672589-79672608 None:intergenic 20.0%
!! TGAAAAATTCCATTTATTGA+CGG + chr7_2:79672611-79672630 None:intergenic 20.0%
!! TAAAATTAGAAAATACTCGA+AGG + chr7_2:79672645-79672664 None:intergenic 20.0%
!! TTAAGTCTGTAAAGATTATT+AGG + chr7_2:79673293-79673312 None:intergenic 20.0%
!! TTTGTAAATTTCTAACTTGA+AGG + chr7_2:79674361-79674380 None:intergenic 20.0%
!! AATTATGTCTTAGGTTTATT+AGG + chr7_2:79674862-79674881 None:intergenic 20.0%
!! AAATTAGGAAATTATGTCTT+AGG + chr7_2:79674871-79674890 None:intergenic 20.0%
!! CATAATTTCCTAATTTAACT+TGG - chr7_2:79674875-79674894 Msa1080270:five_prime_UTR 20.0%
!! GATAATTATGATTTAGTTAC+AGG + chr7_2:79674962-79674981 None:intergenic 20.0%
!!! AAAATTTGAAATTGGATTCA+AGG + chr7_2:79676101-79676120 None:intergenic 20.0%
!! TATGATGATAATAAAACAGA+CGG - chr7_2:79676641-79676660 Msa1080270:intron 20.0%
!!! TTAGTCTATTTGAATTTTGA+AGG - chr7_2:79676941-79676960 Msa1080270:intron 20.0%
!! ACAACAAAAAGAAACAAAAA+GGG + chr7_2:79677171-79677190 None:intergenic 20.0%
!! TACAACAAAAAGAAACAAAA+AGG + chr7_2:79677172-79677191 None:intergenic 20.0%
!! ATTTGACAAAAGAAAATCAA+AGG + chr7_2:79677432-79677451 None:intergenic 20.0%
! GACAGTATTGTTAAGAATAT+TGG - chr7_2:79672340-79672359 Msa1080270:three_prime_UTR 25.0%
!!! TTAGATTTGATTTGGTTACA+TGG - chr7_2:79672537-79672556 Msa1080270:three_prime_UTR 25.0%
!!! TTATACACGCATTTTTAACT+AGG - chr7_2:79672662-79672681 Msa1080270:three_prime_UTR 25.0%
! CTAAAATGTAAAGGAGTAAT+TGG + chr7_2:79672694-79672713 None:intergenic 25.0%
!! CAATTACTCCTTTACATTTT+AGG - chr7_2:79672692-79672711 Msa1080270:three_prime_UTR 25.0%
! TGAATCCCAAATATTTAGAA+AGG - chr7_2:79672925-79672944 Msa1080270:three_prime_UTR 25.0%
! TATGTAATCTGTTGCATTAA+AGG + chr7_2:79673001-79673020 None:intergenic 25.0%
!!! ATTTTTGGCCTACTATATTA+TGG - chr7_2:79673225-79673244 Msa1080270:CDS 25.0%
!!! TTTTTGGCCTACTATATTAT+GGG - chr7_2:79673226-79673245 Msa1080270:CDS 25.0%
! TTTGTTCATAGTATGACATA+TGG - chr7_2:79673259-79673278 Msa1080270:CDS 25.0%
!! TGATAATTTAAAGGCATAGA+GGG + chr7_2:79673433-79673452 None:intergenic 25.0%
!!! GTTGATTCGTGATAATTTAA+AGG + chr7_2:79673442-79673461 None:intergenic 25.0%
!!! TCAAATTTTAAAGGCATAGA+GGG + chr7_2:79673503-79673522 None:intergenic 25.0%
!!! TAAAGGAGTATTTGATGATA+TGG - chr7_2:79673622-79673641 Msa1080270:CDS 25.0%
! ACAGATTGAATAGTATAAAG+AGG + chr7_2:79673766-79673785 None:intergenic 25.0%
! TTCTAGTGTTTCAAATAGTT+TGG - chr7_2:79673909-79673928 Msa1080270:five_prime_UTR 25.0%
! TCTAGTGTTTCAAATAGTTT+GGG - chr7_2:79673910-79673929 Msa1080270:five_prime_UTR 25.0%
! GATTTGAAAAACTATGTTTG+AGG + chr7_2:79674014-79674033 None:intergenic 25.0%
! TAATTGGGAAAAAACTGAAT+TGG + chr7_2:79674278-79674297 None:intergenic 25.0%
!! TTTTTCCCAATTATGAAATG+AGG - chr7_2:79674285-79674304 Msa1080270:five_prime_UTR 25.0%
!! GATTGATTCTTCCAATTAAT+CGG + chr7_2:79674553-79674572 None:intergenic 25.0%
!!! ATGTCATCATATTTCAAGTT+GGG + chr7_2:79674576-79674595 None:intergenic 25.0%
! AAGTAAATGTCTATCACAAT+AGG - chr7_2:79674648-79674667 Msa1080270:five_prime_UTR 25.0%
! AGTAAATGTCTATCACAATA+GGG - chr7_2:79674649-79674668 Msa1080270:five_prime_UTR 25.0%
!! AGCAACAAAATTTTTGTATC+AGG - chr7_2:79674690-79674709 Msa1080270:five_prime_UTR 25.0%
! ATCTTATGCCAAGTTAAATT+AGG + chr7_2:79674886-79674905 None:intergenic 25.0%
! TATTAACCTTTGTTCCAATT+GGG + chr7_2:79675119-79675138 None:intergenic 25.0%
! TTATTAACCTTTGTTCCAAT+TGG + chr7_2:79675120-79675139 None:intergenic 25.0%
! ATTGGAACAAAGGTTAATAA+AGG - chr7_2:79675120-79675139 Msa1080270:intron 25.0%
! AATAGGAATGTCCAAAATTA+CGG - chr7_2:79675347-79675366 Msa1080270:intron 25.0%
! TCTTAAAACATCTCAACATT+TGG - chr7_2:79675512-79675531 Msa1080270:intron 25.0%
! CTTAAAACATCTCAACATTT+GGG - chr7_2:79675513-79675532 Msa1080270:intron 25.0%
! AAAGAAGTTGCTAAAGATAA+CGG + chr7_2:79675639-79675658 None:intergenic 25.0%
!! ACTTCTCGTAATTGATTTAT+TGG + chr7_2:79675828-79675847 None:intergenic 25.0%
!! ACGAGCTTAAAATTTGAAAT+TGG + chr7_2:79676109-79676128 None:intergenic 25.0%
! ACAGAAATTAGAAATCTCAT+TGG - chr7_2:79676347-79676366 Msa1080270:five_prime_UTR 25.0%
! ATAATTCTTCGATTACATGT+GGG + chr7_2:79676409-79676428 None:intergenic 25.0%
! AATAATTCTTCGATTACATG+TGG + chr7_2:79676410-79676429 None:intergenic 25.0%
! ACATGTAATCGAAGAATTAT+TGG - chr7_2:79676409-79676428 Msa1080270:intron 25.0%
! ACAAAAGAAAGAGAACAAAA+TGG - chr7_2:79676515-79676534 Msa1080270:intron 25.0%
! ATGATGATAATAAAACAGAC+GGG - chr7_2:79676642-79676661 Msa1080270:intron 25.0%
! AAGACTCATAGTTAATTGAA+TGG - chr7_2:79676889-79676908 Msa1080270:intron 25.0%
!!! GTTCAAATTTTTGTACTGAT+TGG - chr7_2:79676967-79676986 Msa1080270:intron 25.0%
!! ATTCATAACTTGTATTGCAT+TGG - chr7_2:79677018-79677037 Msa1080270:intron 25.0%
!!! CAATGGTTTTAAATGTGAAA+AGG + chr7_2:79677110-79677129 None:intergenic 25.0%
!!! ACTTTATTTTATGATGGTGA+TGG - chr7_2:79677276-79677295 Msa1080270:intron 25.0%
!!! CTTTATTTTATGATGGTGAT+GGG - chr7_2:79677277-79677296 Msa1080270:intron 25.0%
!!! TTTATTTTATGATGGTGATG+GGG - chr7_2:79677278-79677297 Msa1080270:intron 25.0%
! ATTTGCATATTTAACACCTA+TGG - chr7_2:79677304-79677323 Msa1080270:intron 25.0%
! TTTGCATATTTAACACCTAT+GGG - chr7_2:79677305-79677324 Msa1080270:intron 25.0%
! AAATTAAGGAAAGCAATACA+CGG + chr7_2:79677602-79677621 None:intergenic 25.0%
! TTTATGCAGCTGATAAATTA+AGG + chr7_2:79677616-79677635 None:intergenic 25.0%
GTATTGTTAAGAATATTGGG+CGG - chr7_2:79672344-79672363 Msa1080270:three_prime_UTR 30.0%
TATTGTTAAGAATATTGGGC+GGG - chr7_2:79672345-79672364 Msa1080270:three_prime_UTR 30.0%
TCTATCATCTTTCCTTCTAT+TGG - chr7_2:79672414-79672433 Msa1080270:intron 30.0%
!!! TTCATTTTTTATGGCAATGC+CGG + chr7_2:79672580-79672599 None:intergenic 30.0%
ATCATCTAACCGTCAATAAA+TGG - chr7_2:79672599-79672618 Msa1080270:three_prime_UTR 30.0%
GCAGAATACCTAAAATGTAA+AGG + chr7_2:79672703-79672722 None:intergenic 30.0%
! CTAAATATTTGGGATTCACA+TGG + chr7_2:79672923-79672942 None:intergenic 30.0%
CGTTGCCTTTCTAAATATTT+GGG + chr7_2:79672933-79672952 None:intergenic 30.0%
ACGTTGCCTTTCTAAATATT+TGG + chr7_2:79672934-79672953 None:intergenic 30.0%
AATCTGTTGCATTAAAGGAT+TGG + chr7_2:79672996-79673015 None:intergenic 30.0%
GTGTTCCTTGAATAATGAAA+CGG - chr7_2:79673071-79673090 Msa1080270:intron 30.0%
! CCTACTATATTATGGGTTTT+GGG - chr7_2:79673233-79673252 Msa1080270:CDS 30.0%
! CTACTATATTATGGGTTTTG+GGG - chr7_2:79673234-79673253 Msa1080270:CDS 30.0%
! GTGATAATTTAAAGGCATAG+AGG + chr7_2:79673434-79673453 None:intergenic 30.0%
!! GTCAAATTTTAAAGGCATAG+AGG + chr7_2:79673504-79673523 None:intergenic 30.0%
AGAATTAAGTACCAGAGATA+GGG + chr7_2:79673570-79673589 None:intergenic 30.0%
AAGAATTAAGTACCAGAGAT+AGG + chr7_2:79673571-79673590 None:intergenic 30.0%
!! TTTTGTTTCATGCAGACTAA+AGG - chr7_2:79673605-79673624 Msa1080270:CDS 30.0%
AATAATCAGCATACTCATAG+AGG - chr7_2:79673823-79673842 Msa1080270:five_prime_UTR 30.0%
GTCAAAGAACTGGAAAAATT+CGG - chr7_2:79674089-79674108 Msa1080270:five_prime_UTR 30.0%
CTGAATTGGACAAACAAATT+GGG + chr7_2:79674264-79674283 None:intergenic 30.0%
ACTGAATTGGACAAACAAAT+TGG + chr7_2:79674265-79674284 None:intergenic 30.0%
AAGCACCTCATTTCATAATT+GGG + chr7_2:79674293-79674312 None:intergenic 30.0%
! AAAGCACCTCATTTCATAAT+TGG + chr7_2:79674294-79674313 None:intergenic 30.0%
CAAAACAAGGTAGATCAAAT+TGG + chr7_2:79674317-79674336 None:intergenic 30.0%
!!! GATCTACCTTGTTTTGTTTT+TGG - chr7_2:79674321-79674340 Msa1080270:five_prime_UTR 30.0%
CACATTCCAAAAACAAAACA+AGG + chr7_2:79674330-79674349 None:intergenic 30.0%
ATTTCTAACTTGAAGGACAA+GGG + chr7_2:79674354-79674373 None:intergenic 30.0%
AATTTCTAACTTGAAGGACA+AGG + chr7_2:79674355-79674374 None:intergenic 30.0%
ATTGCCATAAAATTACTTGC+AGG + chr7_2:79674396-79674415 None:intergenic 30.0%
! ATTTTTATCAAAACCAGCCA+GGG + chr7_2:79674438-79674457 None:intergenic 30.0%
!! CACAAATGAATTTTCAAGAC+AGG + chr7_2:79674522-79674541 None:intergenic 30.0%
!! TGTCATCATATTTCAAGTTG+GGG + chr7_2:79674575-79674594 None:intergenic 30.0%
! GATGTCATCATATTTCAAGT+TGG + chr7_2:79674577-79674596 None:intergenic 30.0%
AGTAAAGCAAACTAAAGAAG+AGG - chr7_2:79674599-79674618 Msa1080270:five_prime_UTR 30.0%
GTAAAGCAAACTAAAGAAGA+GGG - chr7_2:79674600-79674619 Msa1080270:five_prime_UTR 30.0%
AACATGACAAAATGCTTGAT+CGG - chr7_2:79674624-79674643 Msa1080270:five_prime_UTR 30.0%
TAGGCATATTTATTATCCCA+CGG + chr7_2:79674797-79674816 None:intergenic 30.0%
CTGCATGCAAAAAACAAAAT+TGG + chr7_2:79675067-79675086 None:intergenic 30.0%
!!! CAATTTTGTTTTTTGCATGC+AGG - chr7_2:79675065-79675084 Msa1080270:intron 30.0%
TCATATTCAATTTGGCACTT+GGG + chr7_2:79675221-79675240 None:intergenic 30.0%
TTCATATTCAATTTGGCACT+TGG + chr7_2:79675222-79675241 None:intergenic 30.0%
!! ATATTTGTTTCTGCTCCTAA+TGG - chr7_2:79675258-79675277 Msa1080270:intron 30.0%
ATAGGAATGTCCAAAATTAC+GGG - chr7_2:79675348-79675367 Msa1080270:intron 30.0%
!!! TGAGATGTTTTAAGAGATGT+TGG + chr7_2:79675507-79675526 None:intergenic 30.0%
TAAATCAATTACGAGAAGTC+TGG - chr7_2:79675829-79675848 Msa1080270:five_prime_UTR 30.0%
AGAGTAGGTGAATAATCATT+TGG + chr7_2:79675962-79675981 None:intergenic 30.0%
! ATTCAAGGTATTCTTATTGG+CGG + chr7_2:79676086-79676105 None:intergenic 30.0%
! TGGATTCAAGGTATTCTTAT+TGG + chr7_2:79676089-79676108 None:intergenic 30.0%
!! CAATTCTGGAAGATTTTACT+GGG + chr7_2:79676277-79676296 None:intergenic 30.0%
!! TCAATTCTGGAAGATTTTAC+TGG + chr7_2:79676278-79676297 None:intergenic 30.0%
AGTAAAATCTTCCAGAATTG+AGG - chr7_2:79676277-79676296 Msa1080270:five_prime_UTR 30.0%
AGAACAGTTTAATAGACACT+TGG - chr7_2:79676481-79676500 Msa1080270:intron 30.0%
AGTTTAATAGACACTTGGAA+TGG - chr7_2:79676486-79676505 Msa1080270:intron 30.0%
ATTTGAAGATGTATACTGTC+AGG - chr7_2:79676730-79676749 Msa1080270:intron 30.0%
TTGTCAGATAACTCAATACT+TGG - chr7_2:79676851-79676870 Msa1080270:intron 30.0%
! CAAAATTTGTTTGACTGCTT+AGG + chr7_2:79677146-79677165 None:intergenic 30.0%
!! GTTTCTTTTTGTTGTACTTG+AGG - chr7_2:79677176-79677195 Msa1080270:five_prime_UTR 30.0%
TTGCATATTTAACACCTATG+GGG - chr7_2:79677306-79677325 Msa1080270:intron 30.0%
AAAAGAAAATCAAAGGAGTG+GGG + chr7_2:79677425-79677444 None:intergenic 30.0%
CAAAAGAAAATCAAAGGAGT+GGG + chr7_2:79677426-79677445 None:intergenic 30.0%
ACAAAAGAAAATCAAAGGAG+TGG + chr7_2:79677427-79677446 None:intergenic 30.0%
TGTCAAATCTACACATTCTT+TGG - chr7_2:79677444-79677463 Msa1080270:intron 30.0%
GTCAAATCTACACATTCTTT+GGG - chr7_2:79677445-79677464 Msa1080270:intron 30.0%
ACTTTGATGAAATCTACACT+TGG - chr7_2:79677537-79677556 Msa1080270:intron 30.0%
CTTTGATGAAATCTACACTT+GGG - chr7_2:79677538-79677557 Msa1080270:intron 30.0%
AATTAAGGAAAGCAATACAC+GGG + chr7_2:79677601-79677620 None:intergenic 30.0%
GATAGATAGATATCTGACCT+CGG + chr7_2:79672400-79672419 None:intergenic 35.0%
AAGGAAGTAATGCCAATAGA+AGG + chr7_2:79672429-79672448 None:intergenic 35.0%
! GGATGATAATGCAATAGTTC+CGG - chr7_2:79672558-79672577 Msa1080270:three_prime_UTR 35.0%
ATTCTGCAATACATACAGAC+AGG - chr7_2:79672716-79672735 Msa1080270:three_prime_UTR 35.0%
AAAGATGCCTCATACTTGAA+TGG + chr7_2:79672755-79672774 None:intergenic 35.0%
!! TCAAGTATGAGGCATCTTTT+TGG - chr7_2:79672756-79672775 Msa1080270:three_prime_UTR 35.0%
TCAATTATCTGAAGAGTCTG+AGG + chr7_2:79672804-79672823 None:intergenic 35.0%
GACTCTTCAGATAATTGAGA+AGG - chr7_2:79672806-79672825 Msa1080270:three_prime_UTR 35.0%
AGACTGAGAATCACTTCTAA+GGG + chr7_2:79672880-79672899 None:intergenic 35.0%
TAACCAAGCTCAAAAGTTGA+TGG + chr7_2:79673117-79673136 None:intergenic 35.0%
! GCGTGAACTGTTCTAATTTT+TGG - chr7_2:79673210-79673229 Msa1080270:CDS 35.0%
! GCCTACTATATTATGGGTTT+TGG - chr7_2:79673232-79673251 Msa1080270:CDS 35.0%
CCCAAAACCCATAATATAGT+AGG + chr7_2:79673236-79673255 None:intergenic 35.0%
AGATATCAAAAAAGGCCTTC+CGG - chr7_2:79673370-79673389 Msa1080270:CDS 35.0%
ATTATATCCATCGTCTCCAT+AGG + chr7_2:79673890-79673909 None:intergenic 35.0%
! GTTTCAAATAGTTTGGGTTC+AGG - chr7_2:79673916-79673935 Msa1080270:five_prime_UTR 35.0%
ATTTGGATGCACATAGCATA+AGG - chr7_2:79674055-79674074 Msa1080270:five_prime_UTR 35.0%
AAAGAACTGGAAAAATTCGG+AGG - chr7_2:79674092-79674111 Msa1080270:five_prime_UTR 35.0%
GTACATTATCAGACAAACCA+GGG + chr7_2:79674146-79674165 None:intergenic 35.0%
! CTCAAGTTGTTAGAGACATT+AGG + chr7_2:79674168-79674187 None:intergenic 35.0%
GCTTACCAAATTGTCTTCAT+CGG + chr7_2:79674208-79674227 None:intergenic 35.0%
!! TGGTAAGCTTGCTACAATAA+AGG - chr7_2:79674220-79674239 Msa1080270:five_prime_UTR 35.0%
!! GGTAAGCTTGCTACAATAAA+GGG - chr7_2:79674221-79674240 Msa1080270:five_prime_UTR 35.0%
! GCATCCTGCAAGTAATTTTA+TGG - chr7_2:79674389-79674408 Msa1080270:five_prime_UTR 35.0%
! CATTTTTATCAAAACCAGCC+AGG + chr7_2:79674439-79674458 None:intergenic 35.0%
!!! AGAAATTGACTTGTCGCTTT+TGG - chr7_2:79674466-79674485 Msa1080270:five_prime_UTR 35.0%
AAATGTCTATCACAATAGGG+TGG - chr7_2:79674652-79674671 Msa1080270:five_prime_UTR 35.0%
AATGTCTATCACAATAGGGT+GGG - chr7_2:79674653-79674672 Msa1080270:five_prime_UTR 35.0%
!! TGGTAGTTGTTTCTTAACAG+TGG + chr7_2:79675151-79675170 None:intergenic 35.0%
AAGAAACAACTACCATCATC+TGG - chr7_2:79675156-79675175 Msa1080270:intron 35.0%
AGAAACAACTACCATCATCT+GGG - chr7_2:79675157-79675176 Msa1080270:intron 35.0%
ACCTGGCTTCATATTCAATT+TGG + chr7_2:79675229-79675248 None:intergenic 35.0%
! ACAAATATTTCTGAGTGACC+TGG + chr7_2:79675246-79675265 None:intergenic 35.0%
ACCCAAGCATTCAAATTCTT+CGG - chr7_2:79675284-79675303 Msa1080270:intron 35.0%
GACATTCCTATTGTTGTATG+CGG + chr7_2:79675339-79675358 None:intergenic 35.0%
AAAACATCTCAACATTTGGG+TGG - chr7_2:79675516-79675535 Msa1080270:intron 35.0%
AATCACAAGAGAAGGATATG+CGG - chr7_2:79675610-79675629 Msa1080270:intron 35.0%
!! AAAGGAGCTTTAGATTTGAG+TGG + chr7_2:79675729-79675748 None:intergenic 35.0%
!!! TGACTTTTCTGAAGTCACTT+TGG + chr7_2:79675760-79675779 None:intergenic 35.0%
AGTAACTGTCCATCTCAAAT+AGG - chr7_2:79675857-79675876 Msa1080270:five_prime_UTR 35.0%
GTAACTGTCCATCTCAAATA+GGG - chr7_2:79675858-79675877 Msa1080270:five_prime_UTR 35.0%
AAATAGGGTTTAAGCCTACT+CGG - chr7_2:79675873-79675892 Msa1080270:five_prime_UTR 35.0%
TGATTGTAGCATCAAGAAGA+TGG - chr7_2:79676540-79676559 Msa1080270:intron 35.0%
AAGATGTATACTGTCAGGAA+AGG - chr7_2:79676735-79676754 Msa1080270:intron 35.0%
AGATGTATACTGTCAGGAAA+GGG - chr7_2:79676736-79676755 Msa1080270:intron 35.0%
GAGATGGAAAGTAGAAATGT+GGG - chr7_2:79676806-79676825 Msa1080270:intron 35.0%
AGATGGAAAGTAGAAATGTG+GGG - chr7_2:79676807-79676826 Msa1080270:intron 35.0%
AAGCATCTAGCATGAATGAT+GGG + chr7_2:79676833-79676852 None:intergenic 35.0%
TTAAGCCAGAAGCTTATCAA+GGG - chr7_2:79677049-79677068 Msa1080270:five_prime_UTR 35.0%
CGTTGCATACTAAAACTAGA+TGG - chr7_2:79677084-79677103 Msa1080270:five_prime_UTR 35.0%
AAAGAAAATCAAAGGAGTGG+GGG + chr7_2:79677424-79677443 None:intergenic 35.0%
!! ATCTACACATTCTTTGGGAT+AGG - chr7_2:79677450-79677469 Msa1080270:intron 35.0%
!! TCTACACATTCTTTGGGATA+GGG - chr7_2:79677451-79677470 Msa1080270:intron 35.0%
CACAACATTTGGTCAAATGT+TGG + chr7_2:79677680-79677699 None:intergenic 35.0%
CTGTCTAAGAGATAAAGCGA+AGG + chr7_2:79672325-79672344 None:intergenic 40.0%
!!! TGAGGCATCTTTTTGGAACT+TGG - chr7_2:79672763-79672782 Msa1080270:three_prime_UTR 40.0%
!!! CATCTTTTTGGAACTTGGAG+AGG - chr7_2:79672768-79672787 Msa1080270:three_prime_UTR 40.0%
ATTATCTGAAGAGTCTGAGG+AGG + chr7_2:79672801-79672820 None:intergenic 40.0%
GAGACTGAGAATCACTTCTA+AGG + chr7_2:79672881-79672900 None:intergenic 40.0%
TCACATGGATGCTATGAGAT+GGG + chr7_2:79672908-79672927 None:intergenic 40.0%
TTCACATGGATGCTATGAGA+TGG + chr7_2:79672909-79672928 None:intergenic 40.0%
CAGCACCGTTTCATTATTCA+AGG + chr7_2:79673079-79673098 None:intergenic 40.0%
CTTGAATAATGAAACGGTGC+TGG - chr7_2:79673077-79673096 Msa1080270:intron 40.0%
! TCGTGATAAGTACTGTGAAC+CGG + chr7_2:79673392-79673411 None:intergenic 40.0%
! GGAGTATTTGATGATATGGC+TGG - chr7_2:79673626-79673645 Msa1080270:CDS 40.0%
CATACATGCATGTTAAGCCT+AGG + chr7_2:79673725-79673744 None:intergenic 40.0%
! TCTGTTCCTGAAAAGAGCAT+CGG - chr7_2:79673859-79673878 Msa1080270:five_prime_UTR 40.0%
! AATAGTTTGGGTTCAGGTGT+TGG - chr7_2:79673922-79673941 Msa1080270:five_prime_UTR 40.0%
GCATCCAAATTCACAGACTT+CGG + chr7_2:79674045-79674064 None:intergenic 40.0%
GGTACATTATCAGACAAACC+AGG + chr7_2:79674147-79674166 None:intergenic 40.0%
GTGTGTGAGTTCCGATTAAT+TGG - chr7_2:79674539-79674558 Msa1080270:five_prime_UTR 40.0%
ATAGGGTGGGAAAGGATAAT+TGG - chr7_2:79674666-79674685 Msa1080270:five_prime_UTR 40.0%
CGTTTCTATGCATCATTCCT+TGG + chr7_2:79674738-79674757 None:intergenic 40.0%
GAGTCATGCATAGATGTGAT+TGG + chr7_2:79674771-79674790 None:intergenic 40.0%
TGGTGTAATTGTAGAGTCCT+GGG + chr7_2:79674911-79674930 None:intergenic 40.0%
TTGGTGTAATTGTAGAGTCC+TGG + chr7_2:79674912-79674931 None:intergenic 40.0%
TTCCAATTGGGTGTGTGATT+TGG + chr7_2:79675107-79675126 None:intergenic 40.0%
GAAACAACTACCATCATCTG+GGG - chr7_2:79675158-79675177 Msa1080270:intron 40.0%
AAACAACTACCATCATCTGG+GGG - chr7_2:79675159-79675178 Msa1080270:intron 40.0%
! GGGGCATTCATCATTATCAT+GGG - chr7_2:79675179-79675198 Msa1080270:intron 40.0%
GCCAAATTGAATATGAAGCC+AGG - chr7_2:79675225-79675244 Msa1080270:intron 40.0%
GCCGAAGAATTTGAATGCTT+GGG + chr7_2:79675288-79675307 None:intergenic 40.0%
AGCCGAAGAATTTGAATGCT+TGG + chr7_2:79675289-79675308 None:intergenic 40.0%
TCTATGCCGCATACAACAAT+AGG - chr7_2:79675330-79675349 Msa1080270:intron 40.0%
ACAGCAGCAATTTGATTCTG+AGG - chr7_2:79675371-79675390 Msa1080270:intron 40.0%
CAGCAGCAATTTGATTCTGA+GGG - chr7_2:79675372-79675391 Msa1080270:intron 40.0%
AGCAGCAATTTGATTCTGAG+GGG - chr7_2:79675373-79675392 Msa1080270:intron 40.0%
! AAGGTGAAGACTGTTCTGAA+GGG + chr7_2:79675407-79675426 None:intergenic 40.0%
AAAGGTGAAGACTGTTCTGA+AGG + chr7_2:79675408-79675427 None:intergenic 40.0%
AACCTGAACATTGGAACGAA+TGG + chr7_2:79675577-79675596 None:intergenic 40.0%
ATTCGTTCCAATGTTCAGGT+TGG - chr7_2:79675576-79675595 Msa1080270:intron 40.0%
CAAGTTACCAACCTGAACAT+TGG + chr7_2:79675586-79675605 None:intergenic 40.0%
CTTGCGAAAATCACAAGAGA+AGG - chr7_2:79675602-79675621 Msa1080270:intron 40.0%
ATCACAAGAGAAGGATATGC+GGG - chr7_2:79675611-79675630 Msa1080270:intron 40.0%
!! GTCACTTTGGCTTTGACTAA+AGG + chr7_2:79675747-79675766 None:intergenic 40.0%
ATGATTCCACTCTTCACAGA+TGG + chr7_2:79675804-79675823 None:intergenic 40.0%
GGCTTAAACCCTATTTGAGA+TGG + chr7_2:79675869-79675888 None:intergenic 40.0%
CGAAGAAATTAATGTGGTCG+GGG + chr7_2:79675912-79675931 None:intergenic 40.0%
CCGAAGAAATTAATGTGGTC+GGG + chr7_2:79675913-79675932 None:intergenic 40.0%
CCCGACCACATTAATTTCTT+CGG - chr7_2:79675910-79675929 Msa1080270:five_prime_UTR 40.0%
CCCGAAGAAATTAATGTGGT+CGG + chr7_2:79675914-79675933 None:intergenic 40.0%
CCGACCACATTAATTTCTTC+GGG - chr7_2:79675911-79675930 Msa1080270:five_prime_UTR 40.0%
CGACCACATTAATTTCTTCG+GGG - chr7_2:79675912-79675931 Msa1080270:five_prime_UTR 40.0%
AGACCCCGAAGAAATTAATG+TGG + chr7_2:79675918-79675937 None:intergenic 40.0%
TTATTGGCGGTATTTGAGCT+CGG + chr7_2:79676073-79676092 None:intergenic 40.0%
TTAAGCTCGTTAGTTGCGAA+AGG - chr7_2:79676119-79676138 Msa1080270:five_prime_UTR 40.0%
TGACAGCAATGCTTTCAGTT+TGG + chr7_2:79676211-79676230 None:intergenic 40.0%
AACTGAAGCAACTGGTAAAG+AGG + chr7_2:79676237-79676256 None:intergenic 40.0%
TGTGCTAGTTGATTGAGACA+AGG + chr7_2:79676330-79676349 None:intergenic 40.0%
TGCATTTCTCGAATGACATC+AGG + chr7_2:79676386-79676405 None:intergenic 40.0%
ATTGCGGTGATTGTGGTATT+AGG - chr7_2:79676447-79676466 Msa1080270:intron 40.0%
TAAAACAGACGGGAGTCAAT+TGG - chr7_2:79676652-79676671 Msa1080270:intron 40.0%
CACACAATACACACAAGCAT+TGG + chr7_2:79676703-79676722 None:intergenic 40.0%
CAATGCTTGTGTGTATTGTG+TGG - chr7_2:79676701-79676720 Msa1080270:intron 40.0%
CGAGATGGAAAGTAGAAATG+TGG - chr7_2:79676805-79676824 Msa1080270:intron 40.0%
CAAGCATCTAGCATGAATGA+TGG + chr7_2:79676834-79676853 None:intergenic 40.0%
!! ATAAGCTTCTGGCTTAACCT+TGG + chr7_2:79677046-79677065 None:intergenic 40.0%
GTTAAGCCAGAAGCTTATCA+AGG - chr7_2:79677048-79677067 Msa1080270:five_prime_UTR 40.0%
TTAGTATGCAACGAGAACCT+GGG + chr7_2:79677077-79677096 None:intergenic 40.0%
TTTAGTATGCAACGAGAACC+TGG + chr7_2:79677078-79677097 None:intergenic 40.0%
!!! ATTTTATGATGGTGATGGGG+CGG - chr7_2:79677281-79677300 Msa1080270:intron 40.0%
TTTAACACCTATGGGGATAC+CGG - chr7_2:79677313-79677332 Msa1080270:intron 40.0%
CAAGGTCATCTTCATCCAAA+CGG - chr7_2:79677355-79677374 Msa1080270:intron 40.0%
GCATAATATTATCCGCCGTT+TGG + chr7_2:79677373-79677392 None:intergenic 40.0%
CAAGGTCATCTTCATCCAAA+CGG - chr7_2:79677355-79677374 Msa1080270:intron 40.0%
TGATGAAATCTACACTTGGG+AGG - chr7_2:79677541-79677560 Msa1080270:intron 40.0%
! GATAAAGCGAAGGCAGCTTT+TGG + chr7_2:79672315-79672334 None:intergenic 45.0%
CTCCTGTCCATTCAAGTATG+AGG - chr7_2:79672745-79672764 Msa1080270:three_prime_UTR 45.0%
TGCCTCATACTTGAATGGAC+AGG + chr7_2:79672750-79672769 None:intergenic 45.0%
AATCATTTCACCTACCCTGC+TGG + chr7_2:79672967-79672986 None:intergenic 45.0%
! CTGCCATCAACTTTTGAGCT+TGG - chr7_2:79673111-79673130 Msa1080270:CDS 45.0%
! GATAAGTACTGTGAACCGGA+AGG + chr7_2:79673388-79673407 None:intergenic 45.0%
CCAGAGATAGGGTGTAGAAA+AGG + chr7_2:79673559-79673578 None:intergenic 45.0%
! CCTTTTCTACACCCTATCTC+TGG - chr7_2:79673556-79673575 Msa1080270:CDS 45.0%
ATGCAAATGAAGACGCAGAG+AGG - chr7_2:79673660-79673679 Msa1080270:CDS 45.0%
ACCTTATCCGGGCAAAGAAA+TGG - chr7_2:79673982-79674001 Msa1080270:five_prime_UTR 45.0%
ACCATTTCTTTGCCCGGATA+AGG + chr7_2:79673986-79674005 None:intergenic 45.0%
GCTGAAACCATTTCTTTGCC+CGG + chr7_2:79673992-79674011 None:intergenic 45.0%
! AGCACCGAAGTCTGTGAATT+TGG - chr7_2:79674038-79674057 Msa1080270:five_prime_UTR 45.0%
GCAGTGCAATGTCAAAGAAC+TGG - chr7_2:79674079-79674098 Msa1080270:five_prime_UTR 45.0%
CTGGAAAAATTCGGAGGAAG+AGG - chr7_2:79674098-79674117 Msa1080270:five_prime_UTR 45.0%
GATGGCCGATGAAGACAATT+TGG - chr7_2:79674200-79674219 Msa1080270:five_prime_UTR 45.0%
TAATCAAGACCCATTCACCC+TGG - chr7_2:79674418-79674437 Msa1080270:five_prime_UTR 45.0%
CTATCACAATAGGGTGGGAA+AGG - chr7_2:79674658-79674677 Msa1080270:five_prime_UTR 45.0%
GTAAGACAGAACTGTGACCA+AGG - chr7_2:79674718-79674737 Msa1080270:five_prime_UTR 45.0%
TCTATGCATGACTCTTTCCG+TGG - chr7_2:79674777-79674796 Msa1080270:five_prime_UTR 45.0%
CTATGCATGACTCTTTCCGT+GGG - chr7_2:79674778-79674797 Msa1080270:five_prime_UTR 45.0%
AACTTGGCATAAGATACCCC+AGG - chr7_2:79674891-79674910 Msa1080270:intron 45.0%
GGTGTAATTGTAGAGTCCTG+GGG + chr7_2:79674910-79674929 None:intergenic 45.0%
! CAATTGGGTGTGTGATTTGG+AGG + chr7_2:79675104-79675123 None:intergenic 45.0%
CTCCAAATCACACACCCAAT+TGG - chr7_2:79675102-79675121 Msa1080270:intron 45.0%
CACACACCCAATTGGAACAA+AGG - chr7_2:79675110-79675129 Msa1080270:intron 45.0%
AACAACTACCATCATCTGGG+GGG - chr7_2:79675160-79675179 Msa1080270:intron 45.0%
!! GGGGGCATTCATCATTATCA+TGG - chr7_2:79675178-79675197 Msa1080270:intron 45.0%
GAATGCTTGGGTAAGCCATT+AGG + chr7_2:79675276-79675295 None:intergenic 45.0%
ATTCAAATTCTTCGGCTGCG+AGG - chr7_2:79675292-79675311 Msa1080270:intron 45.0%
! TTGCTGCTGTCCCGTAATTT+TGG + chr7_2:79675361-79675380 None:intergenic 45.0%
!! AGGTGAAGACTGTTCTGAAG+GGG + chr7_2:79675406-79675425 None:intergenic 45.0%
CGTATTGTTACTGGCACTGT+TGG + chr7_2:79675444-79675463 None:intergenic 45.0%
CCAAATTACGCATCGAAGGA+GGG + chr7_2:79675470-79675489 None:intergenic 45.0%
TCAGCCAAATTACGCATCGA+AGG + chr7_2:79675474-79675493 None:intergenic 45.0%
TGAACATTGGAACGAATGGC+AGG + chr7_2:79675573-79675592 None:intergenic 45.0%
TGCCATTCGTTCCAATGTTC+AGG - chr7_2:79675572-79675591 Msa1080270:intron 45.0%
TCACAAGAGAAGGATATGCG+GGG - chr7_2:79675612-79675631 Msa1080270:intron 45.0%
GAAATTAATGTGGTCGGGGA+AGG + chr7_2:79675908-79675927 None:intergenic 45.0%
ATTTGGAGAACCTAGTGACG+CGG + chr7_2:79675945-79675964 None:intergenic 45.0%
GAAGGCTGGAAAGAAGCAAA+AGG - chr7_2:79676000-79676019 Msa1080270:five_prime_UTR 45.0%
CGATTGTTGGAGGAAGTAGA+TGG + chr7_2:79676037-79676056 None:intergenic 45.0%
TCTACTTCCTCCAACAATCG+CGG - chr7_2:79676037-79676056 Msa1080270:five_prime_UTR 45.0%
AACTACAGTGCCAAGTGAGA+CGG - chr7_2:79676169-79676188 Msa1080270:intron 45.0%
GAAACAGGAACTGAAGCAAC+TGG + chr7_2:79676245-79676264 None:intergenic 45.0%
AGCATCATCTGCCTCAATTC+TGG + chr7_2:79676291-79676310 None:intergenic 45.0%
GATGAACTCCCACATCATTG+CGG - chr7_2:79676431-79676450 Msa1080270:intron 45.0%
CACAATCACCGCAATGATGT+GGG + chr7_2:79676442-79676461 None:intergenic 45.0%
GGTATGCAACATCAGATGAC+TGG - chr7_2:79676561-79676580 Msa1080270:intron 45.0%
ACATCAGATGACTGGATTGC+TGG - chr7_2:79676569-79676588 Msa1080270:intron 45.0%
TCTCGCTATCTGGATTGTTC+AGG + chr7_2:79676790-79676809 None:intergenic 45.0%
GAACAATCCAGATAGCGAGA+TGG - chr7_2:79676790-79676809 Msa1080270:intron 45.0%
CTACTTTCCATCTCGCTATC+TGG + chr7_2:79676800-79676819 None:intergenic 45.0%
ATTGGACCTGCTCTTTATGC+AGG - chr7_2:79676985-79677004 Msa1080270:intron 45.0%
CATGTTCCTGCATAAAGAGC+AGG + chr7_2:79676994-79677013 None:intergenic 45.0%
CTTGTATTGCATTGGAGCCA+AGG - chr7_2:79677026-79677045 Msa1080270:five_prime_UTR 45.0%
TAGGAAAGCAGCTAAGGCAA+TGG + chr7_2:79677127-79677146 None:intergenic 45.0%
ACTGCTTAGGAAAGCAGCTA+AGG + chr7_2:79677133-79677152 None:intergenic 45.0%
TTAACACCTATGGGGATACC+GGG - chr7_2:79677314-79677333 Msa1080270:intron 45.0%
CAAGCTTATTATCCGCCGTT+TGG + chr7_2:79677498-79677517 None:intergenic 45.0%
GTAGCATAGCGCACAACATT+TGG + chr7_2:79677691-79677710 None:intergenic 45.0%
!! TATTATTATAATCAAATAAA+AGG + chr7_2:79672448-79672467 None:intergenic 5.0%
! GCTTTTGGTCACTTGGAACC+TGG + chr7_2:79672300-79672319 None:intergenic 50.0%
! GAAGGCAGCTTTTGGTCACT+TGG + chr7_2:79672307-79672326 None:intergenic 50.0%
! ACTTTGCTGTCAGACTACCG+AGG - chr7_2:79672380-79672399 Msa1080270:three_prime_UTR 50.0%
GGAACTCAACTTCAATCCCG+CGG - chr7_2:79672827-79672846 Msa1080270:three_prime_UTR 50.0%
AACTTCAATCCCGCGGTCAA+TGG - chr7_2:79672834-79672853 Msa1080270:three_prime_UTR 50.0%
AGAAGCTGAACCATTGACCG+CGG + chr7_2:79672847-79672866 None:intergenic 50.0%
TTAAGCCTAGGATCCAGCCA+TGG + chr7_2:79673713-79673732 None:intergenic 50.0%
!! GTTCCTGAAAAGAGCATCGG+CGG - chr7_2:79673862-79673881 Msa1080270:five_prime_UTR 50.0%
!! GGTTCAGGTGTTGGAAGAAC+CGG - chr7_2:79673931-79673950 Msa1080270:five_prime_UTR 50.0%
GTGTTGGAAGAACCGGAAGT+AGG - chr7_2:79673938-79673957 Msa1080270:five_prime_UTR 50.0%
AGAACCGGAAGTAGGCTCAT+TGG - chr7_2:79673946-79673965 Msa1080270:five_prime_UTR 50.0%
! GGTGTTGCAGAGACCTTATC+CGG - chr7_2:79673970-79673989 Msa1080270:five_prime_UTR 50.0%
GTGTTGCAGAGACCTTATCC+GGG - chr7_2:79673971-79673990 Msa1080270:five_prime_UTR 50.0%
GGAGGAAGAGGAGTTCATGT+GGG - chr7_2:79674110-79674129 Msa1080270:five_prime_UTR 50.0%
AGAGGAGTTCATGTGGGATG+AGG - chr7_2:79674116-79674135 Msa1080270:five_prime_UTR 50.0%
ACAACTTGAGCTCAGACCCA+TGG - chr7_2:79674178-79674197 Msa1080270:five_prime_UTR 50.0%
TGTCTTCATCGGCCATCCAT+GGG + chr7_2:79674197-79674216 None:intergenic 50.0%
TTGTCTTCATCGGCCATCCA+TGG + chr7_2:79674198-79674217 None:intergenic 50.0%
CAAAACCAGCCAGGGTGAAT+GGG + chr7_2:79674430-79674449 None:intergenic 50.0%
TCAAAACCAGCCAGGGTGAA+TGG + chr7_2:79674431-79674450 None:intergenic 50.0%
ATCATGGGAGTTGCAGAAGC+AGG - chr7_2:79675194-79675213 Msa1080270:intron 50.0%
GTTGGAGACTGTTGTCGCAA+AGG + chr7_2:79675426-79675445 None:intergenic 50.0%
GGAGGGTTGCGTATTGTTAC+TGG + chr7_2:79675453-79675472 None:intergenic 50.0%
CCCTCCTTCGATGCGTAATT+TGG - chr7_2:79675467-79675486 Msa1080270:intron 50.0%
GCCAAATTACGCATCGAAGG+AGG + chr7_2:79675471-79675490 None:intergenic 50.0%
ATTGGAACGAATGGCAGGCA+CGG + chr7_2:79675568-79675587 None:intergenic 50.0%
! AGCTGCTGTTGCTGAGGTTT+TGG + chr7_2:79675666-79675685 None:intergenic 50.0%
AAAACCTCAGCAACAGCAGC+TGG - chr7_2:79675665-79675684 Msa1080270:intron 50.0%
AAACCTCAGCAACAGCAGCT+GGG - chr7_2:79675666-79675685 Msa1080270:intron 50.0%
TTTAAGCCTACTCGGTCAGG+TGG - chr7_2:79675881-79675900 Msa1080270:five_prime_UTR 50.0%
!!! TGCGGTAGTTTTGGCAGAGT+AGG + chr7_2:79675977-79675996 None:intergenic 50.0%
ACTCTGCCAAAACTACCGCA+AGG - chr7_2:79675977-79675996 Msa1080270:five_prime_UTR 50.0%
CTCTGCCAAAACTACCGCAA+GGG - chr7_2:79675978-79675997 Msa1080270:five_prime_UTR 50.0%
TTCTTTCCAGCCTTCCCTTG+CGG + chr7_2:79675995-79676014 None:intergenic 50.0%
GCGAAAGGTTTGATATCCGC+AGG - chr7_2:79676134-79676153 Msa1080270:five_prime_UTR 50.0%
!! AGTTGCTGACTCTGTTCCTG+CGG + chr7_2:79676153-79676172 None:intergenic 50.0%
ACTGGGACAGCTGAAGAAAC+AGG + chr7_2:79676260-79676279 None:intergenic 50.0%
TGAGGCAGATGATGCTGCAA+AGG - chr7_2:79676295-79676314 Msa1080270:five_prime_UTR 50.0%
TGATTGAGACAAGGCAAGCG+AGG + chr7_2:79676321-79676340 None:intergenic 50.0%
CCACAATCACCGCAATGATG+TGG + chr7_2:79676443-79676462 None:intergenic 50.0%
CCACATCATTGCGGTGATTG+TGG - chr7_2:79676440-79676459 Msa1080270:intron 50.0%
AGATGACTGGATTGCTGGCA+AGG - chr7_2:79676574-79676593 Msa1080270:intron 50.0%
CGGGAGTCAATTGGACACTA+TGG - chr7_2:79676661-79676680 Msa1080270:intron 50.0%
AAGGGACGAGTGGATGTTCA+AGG - chr7_2:79676754-79676773 Msa1080270:intron 50.0%
AGGGACGAGTGGATGTTCAA+GGG - chr7_2:79676755-79676774 Msa1080270:intron 50.0%
GGGTACCCTTGATAAGCTTC+TGG + chr7_2:79677057-79677076 None:intergenic 50.0%
!! GAAGCTTATCAAGGGTACCC+AGG - chr7_2:79677057-79677076 Msa1080270:five_prime_UTR 50.0%
TAACACCTATGGGGATACCG+GGG - chr7_2:79677315-79677334 Msa1080270:intron 50.0%
GGTCATCTTCATCCAAACGG+CGG - chr7_2:79677358-79677377 Msa1080270:intron 50.0%
! TTTGGGATAGGGACACAGCA+AGG - chr7_2:79677462-79677481 Msa1080270:intron 50.0%
GGTCATCTTCATCCAAACGG+CGG - chr7_2:79677358-79677377 Msa1080270:intron 50.0%
GAAGCTGAACCATTGACCGC+GGG + chr7_2:79672846-79672865 None:intergenic 55.0%
AACGTCTTCAGCAGTCCAGC+AGG - chr7_2:79672949-79672968 Msa1080270:three_prime_UTR 55.0%
ACGTCTTCAGCAGTCCAGCA+GGG - chr7_2:79672950-79672969 Msa1080270:three_prime_UTR 55.0%
AGAGAGGCCAGATCGAGCTT+TGG - chr7_2:79673676-79673695 Msa1080270:CDS 55.0%
GAGAGGCCAGATCGAGCTTT+GGG - chr7_2:79673677-79673696 Msa1080270:CDS 55.0%
ACCGGAAGTAGGCTCATTGG+CGG - chr7_2:79673949-79673968 Msa1080270:five_prime_UTR 55.0%
ACCGCCAATGAGCCTACTTC+CGG + chr7_2:79673953-79673972 None:intergenic 55.0%
CGGAGGAAGAGGAGTTCATG+TGG - chr7_2:79674109-79674128 Msa1080270:five_prime_UTR 55.0%
ATGTGGGATGAGGTGAACCC+TGG - chr7_2:79674126-79674145 Msa1080270:five_prime_UTR 55.0%
CTTGAGCTCAGACCCATGGA+TGG - chr7_2:79674182-79674201 Msa1080270:five_prime_UTR 55.0%
GATGAATGCCCCCCAGATGA+TGG + chr7_2:79675171-79675190 None:intergenic 55.0%
TTGGAACGAATGGCAGGCAC+GGG + chr7_2:79675567-79675586 None:intergenic 55.0%
ACAGCAGCTGGGTTCTTCAC+AGG - chr7_2:79675677-79675696 Msa1080270:intron 55.0%
CCACTCTTCACAGATGGAGC+TGG + chr7_2:79675798-79675817 None:intergenic 55.0%
CCAGCTCCATCTGTGAAGAG+TGG - chr7_2:79675795-79675814 Msa1080270:five_prime_UTR 55.0%
GGGTTTAAGCCTACTCGGTC+AGG - chr7_2:79675878-79675897 Msa1080270:five_prime_UTR 55.0%
GCCAAAACTACCGCAAGGGA+AGG - chr7_2:79675982-79676001 Msa1080270:five_prime_UTR 55.0%
! GCCTTCCCTTGCGGTAGTTT+TGG + chr7_2:79675986-79676005 None:intergenic 55.0%
AAACTACCGCAAGGGAAGGC+TGG - chr7_2:79675986-79676005 Msa1080270:five_prime_UTR 55.0%
TGATGCACCGCGATTGTTGG+AGG + chr7_2:79676047-79676066 None:intergenic 55.0%
AGCTGATGCACCGCGATTGT+TGG + chr7_2:79676050-79676069 None:intergenic 55.0%
GATCGCATCACCGTCTCACT+TGG + chr7_2:79676182-79676201 None:intergenic 55.0%
ACTGTCAGGAAAGGGACGAG+TGG - chr7_2:79676744-79676763 Msa1080270:intron 55.0%
GGGACGAGTGGATGTTCAAG+GGG - chr7_2:79676756-79676775 Msa1080270:intron 55.0%
GGACGAGTGGATGTTCAAGG+GGG - chr7_2:79676757-79676776 Msa1080270:intron 55.0%
AACACCTATGGGGATACCGG+GGG - chr7_2:79677316-79677335 Msa1080270:intron 55.0%
CTTCAGCAGTCCAGCAGGGT+AGG - chr7_2:79672954-79672973 Msa1080270:three_prime_UTR 60.0%
GCAGCACCCAAAGCTCGATC+TGG + chr7_2:79673686-79673705 None:intergenic 60.0%
! CTTTGGGTGCTGCACGTCCA+TGG - chr7_2:79673693-79673712 Msa1080270:CDS 60.0%
CACGTCCATGGCTGGATCCT+AGG - chr7_2:79673705-79673724 Msa1080270:CDS 60.0%
! GCTCCGCCGATGCTCTTTTC+AGG + chr7_2:79673868-79673887 None:intergenic 60.0%
!! AAGAGCATCGGCGGAGCCTA+TGG - chr7_2:79673871-79673890 Msa1080270:five_prime_UTR 60.0%
CAAGACCCATTCACCCTGGC+TGG - chr7_2:79674422-79674441 Msa1080270:five_prime_UTR 60.0%
GAACCCAGCTGCTGTTGCTG+AGG + chr7_2:79675672-79675691 None:intergenic 60.0%
GAAGGACCACCTGACCGAGT+AGG + chr7_2:79675890-79675909 None:intergenic 60.0%
TGGAGAACCTAGTGACGCGG+CGG + chr7_2:79675942-79675961 None:intergenic 60.0%
ACACCTATGGGGATACCGGG+GGG - chr7_2:79677317-79677336 Msa1080270:intron 60.0%
GGCGGAGCCTATGGAGACGA+TGG - chr7_2:79673880-79673899 Msa1080270:five_prime_UTR 65.0%
GGAGAACCTAGTGACGCGGC+GGG + chr7_2:79675941-79675960 None:intergenic 65.0%
CACCTATGGGGATACCGGGG+GGG - chr7_2:79677318-79677337 Msa1080270:intron 65.0%
ACCTATGGGGATACCGGGGG+GGG - chr7_2:79677319-79677338 Msa1080270:intron 65.0%
! GGGTGCTGCACGTCCATGGC+TGG - chr7_2:79673697-79673716 Msa1080270:CDS 70.0%
CCTATGGGGATACCGGGGGG+GGG - chr7_2:79677320-79677339 Msa1080270:intron 70.0%
CTATGGGGATACCGGGGGGG+GGG - chr7_2:79677321-79677340 Msa1080270:intron 70.0%
TATGGGGATACCGGGGGGGG+GGG - chr7_2:79677322-79677341 Msa1080270:intron 70.0%
GGGGGGGGGGTAACACAGCA+AGG - chr7_2:79677337-79677356 Msa1080270:intron 70.0%
GGGTCTCCCGCCGCGTCACT+AGG - chr7_2:79675932-79675951 Msa1080270:five_prime_UTR 75.0%
CCCCCCCCCGGTATCCCCAT+AGG + chr7_2:79677323-79677342 None:intergenic 75.0%
ATGGGGATACCGGGGGGGGG+GGG - chr7_2:79677323-79677342 Msa1080270:intron 75.0%
CTGTGTTACCCCCCCCCCCC+CGG + chr7_2:79677335-79677354 None:intergenic 75.0%
! TGGGGATACCGGGGGGGGGG+GGG - chr7_2:79677324-79677343 Msa1080270:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79672281 79677712 79672281 ID=Msa1080270;Name=Msa1080270
chr7_2 mRNA 79672281 79677712 79672281 ID=Msa1080270-mRNA-1;Parent=Msa1080270;Name=Msa1080270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2005|1|1|1|0.66|0.42|7|604|234
chr7_2 exon 79672281 79672430 79672281 ID=Msa1080270-mRNA-1:exon:20046;Parent=Msa1080270-mRNA-1
chr7_2 exon 79672521 79672986 79672521 ID=Msa1080270-mRNA-1:exon:20045;Parent=Msa1080270-mRNA-1
chr7_2 exon 79673107 79674906 79673107 ID=Msa1080270-mRNA-1:exon:20044;Parent=Msa1080270-mRNA-1
chr7_2 exon 79675772 79676170 79675772 ID=Msa1080270-mRNA-1:exon:20043;Parent=Msa1080270-mRNA-1
chr7_2 exon 79676254 79676373 79676254 ID=Msa1080270-mRNA-1:exon:20042;Parent=Msa1080270-mRNA-1
chr7_2 exon 79677022 79677279 79677022 ID=Msa1080270-mRNA-1:exon:20041;Parent=Msa1080270-mRNA-1
chr7_2 exon 79677592 79677712 79677592 ID=Msa1080270-mRNA-1:exon:20040;Parent=Msa1080270-mRNA-1
chr7_2 five_prime_UTR 79677592 79677712 79677592 ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 five_prime_UTR 79677022 79677279 79677022 ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 five_prime_UTR 79676254 79676373 79676254 ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 five_prime_UTR 79675772 79676170 79675772 ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 five_prime_UTR 79673800 79674906 79673800 ID=Msa1080270-mRNA-1:five_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 CDS 79673107 79673799 79673107 ID=Msa1080270-mRNA-1:cds;Parent=Msa1080270-mRNA-1
chr7_2 CDS 79672975 79672986 79672975 ID=Msa1080270-mRNA-1:cds;Parent=Msa1080270-mRNA-1
chr7_2 three_prime_UTR 79672521 79672974 79672521 ID=Msa1080270-mRNA-1:three_prime_utr;Parent=Msa1080270-mRNA-1
chr7_2 three_prime_UTR 79672281 79672430 79672281 ID=Msa1080270-mRNA-1:three_prime_utr;Parent=Msa1080270-mRNA-1
Gene Sequence

>Msa1080270

ATGCGATCGAAAGACCAAACTGAAAGCATTGCTGTCAGTTCCTCTTTACCAGTTGCTTCAGTTCCTGTTTCTTCAGCTGTCCCAGTAAAATCTTCCAGAATTGAGGCAGATGATGCTGCAAAGGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTCATTCGAGAAATGCACCCACATGTAATCGAAGAATTATTGGATGAACTCCCACATCATTGCGGTGATTGTGGTATTAGGCTTAAACAACAAGAACAGTTTAATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTGTAGCATCAAGAAGATGGTATGCAACATCAGATGACTGGATTGCTGGCAAGGCAGAATGTCTGTCTGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGATAATAAAACAGACGGGAGTCAATTGGACACTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACGAGTGGATGTTCAAGGGGGCTGTATACCTGAACAATCCAGATAGCGAGATGGAAAGTAGAAATGTGGGGCCCATCATTCATGCTAGATGCTTGTCAGATAACTCAATACTTGGTGTGACTAATACAGAACATGATTGA
Protein sequence

>Msa1080270

MRSKDQTESIAVSSSLPVASVPVSSAVPVKSSRIEADDAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKEREQNGLIVASRRWYATSDDWIAGKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPDSEMESRNVGPIIHARCLSDNSILGVTNTEHD*