Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796260 | XP_003611304.2 | 68.622 | 341 | 9 | 4 | 1 | 278 | 1 | 306 | 1.03e-143 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796260 | sp|Q39079|DNJ13_ARATH | 43.976 | 332 | 88 | 3 | 10 | 278 | 13 | 309 | 1.97e-79 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796260 | G7JW29 | 68.622 | 341 | 9 | 4 | 1 | 278 | 1 | 306 | 4.92e-144 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0796260 | 0.806582 | 7.668381e-50 | -8.615850e-47 |
| Msa0026430 | Msa0796260 | 0.819161 | 1.343300e-52 | -8.615850e-47 |
| Msa0027770 | Msa0796260 | 0.813611 | 2.345190e-51 | -8.615850e-47 |
| Msa0051630 | Msa0796260 | 0.815540 | 8.771824e-52 | -8.615850e-47 |
| Msa0051740 | Msa0796260 | 0.816348 | 5.792633e-52 | -8.615850e-47 |
| Msa0051750 | Msa0796260 | 0.815339 | 9.726020e-52 | -8.615850e-47 |
| Msa0054440 | Msa0796260 | 0.810692 | 1.016060e-50 | -8.615850e-47 |
| Msa0054480 | Msa0796260 | 0.816818 | 4.545689e-52 | -8.615850e-47 |
| Msa0054820 | Msa0796260 | 0.811668 | 6.240178e-51 | -8.615850e-47 |
| Msa0061080 | Msa0796260 | 0.811447 | 6.967831e-51 | -8.615850e-47 |
| Msa0075500 | Msa0796260 | 0.824991 | 5.978604e-54 | -8.615850e-47 |
| Msa0076780 | Msa0796260 | 0.809276 | 2.050009e-50 | -8.615850e-47 |
| Msa0081650 | Msa0796260 | 0.801008 | 1.102818e-48 | -8.615850e-47 |
| Msa0105620 | Msa0796260 | 0.816278 | 6.004475e-52 | -8.615850e-47 |
| Msa0115400 | Msa0796260 | 0.804054 | 2.597112e-49 | -8.615850e-47 |
| Msa0605000 | Msa0796260 | 0.834438 | 2.996532e-56 | -8.615850e-47 |
| Msa0641730 | Msa0796260 | 0.805138 | 1.542556e-49 | -8.615850e-47 |
| Msa0651270 | Msa0796260 | 0.813257 | 2.804320e-51 | -8.615850e-47 |
| Msa0685140 | Msa0796260 | 0.838150 | 3.411677e-57 | -8.615850e-47 |
| Msa0689260 | Msa0796260 | 0.811881 | 5.606847e-51 | -8.615850e-47 |
| Msa0691290 | Msa0796260 | 0.828633 | 8.068088e-55 | -8.615850e-47 |
| Msa0702370 | Msa0796260 | 0.804841 | 1.779770e-49 | -8.615850e-47 |
| Msa0702550 | Msa0796260 | 0.802149 | 6.433952e-49 | -8.615850e-47 |
| Msa0709160 | Msa0796260 | 0.832755 | 7.889316e-56 | -8.615850e-47 |
| Msa0711780 | Msa0796260 | 0.842577 | 2.375932e-58 | -8.615850e-47 |
| Msa0721280 | Msa0796260 | 0.800299 | 1.538565e-48 | -8.615850e-47 |
| Msa0763890 | Msa0796260 | 0.803642 | 3.162748e-49 | -8.615850e-47 |
| Msa0794670 | Msa0796260 | 0.829512 | 4.939733e-55 | -8.615850e-47 |
| Msa0796210 | Msa0796260 | 0.804795 | 1.820099e-49 | -8.615850e-47 |
| Msa0796260 | Msa0830540 | 0.821628 | 3.650051e-53 | -8.615850e-47 |
| Msa0796260 | Msa0831530 | 0.804378 | 2.222762e-49 | -8.615850e-47 |
| Msa0796260 | Msa0832090 | 0.808252 | 3.393140e-50 | -8.615850e-47 |
| Msa0796260 | Msa0880040 | 0.856679 | 2.733896e-62 | -8.615850e-47 |
| Msa0796260 | Msa0923330 | 0.805177 | 1.513721e-49 | -8.615850e-47 |
| Msa0796260 | Msa0937150 | 0.815223 | 1.032040e-51 | -8.615850e-47 |
| Msa0796260 | Msa0945440 | 0.839981 | 1.144178e-57 | -8.615850e-47 |
| Msa0796260 | Msa0970530 | 0.837754 | 4.312598e-57 | -8.615850e-47 |
| Msa0796260 | Msa0970600 | 0.834709 | 2.561827e-56 | -8.615850e-47 |
| Msa0796260 | Msa1036410 | 0.818878 | 1.557896e-52 | -8.615850e-47 |
| Msa0796260 | Msa1077070 | 0.807138 | 5.852347e-50 | -8.615850e-47 |
| Msa0796260 | Msa1088290 | 0.801362 | 9.334321e-49 | -8.615850e-47 |
| Msa0796260 | Msa1100720 | 0.813305 | 2.738168e-51 | -8.615850e-47 |
| Msa0796260 | Msa1122780 | 0.805904 | 1.065455e-49 | -8.615850e-47 |
| Msa0796260 | Msa1128570 | 0.819903 | 9.094183e-53 | -8.615850e-47 |
| Msa0796260 | Msa1144040 | 0.819292 | 1.253840e-52 | -8.615850e-47 |
| Msa0796260 | Msa1160590 | 0.805627 | 1.218436e-49 | -8.615850e-47 |
| Msa0796260 | Msa1208880 | 0.811765 | 5.944099e-51 | -8.615850e-47 |
| Msa0796260 | Msa1209760 | 0.854556 | 1.137525e-61 | -8.615850e-47 |
| Msa0796260 | Msa1216720 | 0.805465 | 1.317702e-49 | -8.615850e-47 |
| Msa0796260 | Msa1219170 | 0.832240 | 1.058376e-55 | -8.615850e-47 |
| Msa0796260 | Msa1245930 | 0.822486 | 2.309239e-53 | -8.615850e-47 |
| Msa0796260 | Msa1259060 | 0.824211 | 9.124444e-54 | -8.615850e-47 |
| Msa0796260 | Msa1270730 | 0.804475 | 2.122335e-49 | -8.615850e-47 |
| Msa0796260 | Msa1294070 | 0.800738 | 1.251870e-48 | -8.615850e-47 |
| Msa0796260 | Msa1295930 | 0.815583 | 8.581303e-52 | -8.615850e-47 |
| Msa0796260 | Msa1333420 | 0.805498 | 1.296873e-49 | -8.615850e-47 |
| Msa0796260 | Msa1357890 | 0.800702 | 1.273467e-48 | -8.615850e-47 |
| Msa0796260 | Msa1358250 | 0.809896 | 1.508431e-50 | -8.615850e-47 |
| Msa0796260 | Msa1359560 | 0.801542 | 8.573767e-49 | -8.615850e-47 |
| Msa0796260 | Msa1381780 | 0.815631 | 8.373203e-52 | -8.615850e-47 |
| Msa0796260 | Msa1392780 | 0.801053 | 1.079511e-48 | -8.615850e-47 |
| Msa0796260 | Msa1400580 | 0.821121 | 4.776991e-53 | -8.615850e-47 |
| Msa0796260 | Msa1411750 | 0.810411 | 1.168420e-50 | -8.615850e-47 |
| Msa0796260 | Msa1419870 | 0.817033 | 4.067120e-52 | -8.615850e-47 |
| Msa0796260 | Msa1428780 | 0.802733 | 4.876497e-49 | -8.615850e-47 |
| Msa0796260 | Msa1457920 | 0.800527 | 1.382137e-48 | -8.615850e-47 |
| Msa0796260 | Msa1458810 | 0.826087 | 3.287637e-54 | -8.615850e-47 |
| Msa0127020 | Msa0796260 | 0.843995 | 9.942474e-59 | -8.615850e-47 |
| Msa0157100 | Msa0796260 | 0.803338 | 3.655743e-49 | -8.615850e-47 |
| Msa0168230 | Msa0796260 | 0.808117 | 3.625779e-50 | -8.615850e-47 |
| Msa0169280 | Msa0796260 | 0.846506 | 2.081600e-59 | -8.615850e-47 |
| Msa0179190 | Msa0796260 | 0.810562 | 1.083840e-50 | -8.615850e-47 |
| Msa0206010 | Msa0796260 | 0.816601 | 5.083735e-52 | -8.615850e-47 |
| Msa0212930 | Msa0796260 | 0.815679 | 8.170092e-52 | -8.615850e-47 |
| Msa0233370 | Msa0796260 | 0.810006 | 1.428242e-50 | -8.615850e-47 |
| Msa0387050 | Msa0796260 | 0.805378 | 1.373819e-49 | -8.615850e-47 |
| Msa0388700 | Msa0796260 | 0.809331 | 1.995028e-50 | -8.615850e-47 |
| Msa0430060 | Msa0796260 | 0.805496 | 1.297893e-49 | -8.615850e-47 |
| Msa0430150 | Msa0796260 | 0.803382 | 3.579887e-49 | -8.615850e-47 |
| Msa0481280 | Msa0796260 | 0.810244 | 1.269088e-50 | -8.615850e-47 |
| Msa0481530 | Msa0796260 | 0.802475 | 5.511819e-49 | -8.615850e-47 |
| Msa0241470 | Msa0796260 | 0.802630 | 5.120174e-49 | -8.615850e-47 |
| Msa0249100 | Msa0796260 | 0.811491 | 6.818986e-51 | -8.615850e-47 |
| Msa0253200 | Msa0796260 | 0.825114 | 5.593597e-54 | -8.615850e-47 |
| Msa0271530 | Msa0796260 | 0.854011 | 1.635363e-61 | -8.615850e-47 |
| Msa0292030 | Msa0796260 | 0.824748 | 6.822013e-54 | -8.615850e-47 |
| Msa0300150 | Msa0796260 | 0.825432 | 4.702259e-54 | -8.615850e-47 |
| Msa0309750 | Msa0796260 | 0.805888 | 1.073728e-49 | -8.615850e-47 |
| Msa0311720 | Msa0796260 | 0.801223 | 9.964374e-49 | -8.615850e-47 |
| Msa0326110 | Msa0796260 | 0.812247 | 4.666001e-51 | -8.615850e-47 |
| Msa0330310 | Msa0796260 | 0.824261 | 8.885097e-54 | -8.615850e-47 |
| Msa0484780 | Msa0796260 | 0.802016 | 6.851357e-49 | -8.615850e-47 |
| Msa0502090 | Msa0796260 | 0.810023 | 1.416690e-50 | -8.615850e-47 |
| Msa0542090 | Msa0796260 | 0.845023 | 5.258435e-59 | -8.615850e-47 |
| Msa0542130 | Msa0796260 | 0.842419 | 2.615827e-58 | -8.615850e-47 |
| Msa0554290 | Msa0796260 | 0.810268 | 1.254154e-50 | -8.615850e-47 |
| Msa0579130 | Msa0796260 | 0.803851 | 2.862201e-49 | -8.615850e-47 |
| Msa0585560 | Msa0796260 | 0.800859 | 1.182693e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796260 | MtrunA17_Chr5g0399201 | 68.622 | 341 | 9 | 4 | 1 | 278 | 1 | 306 | 9.48e-148 | 424 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796260 | AT2G35720.1 | 43.976 | 332 | 88 | 3 | 10 | 278 | 13 | 309 | 2.00e-80 | 252 |
Find 59 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGGTTTACGTTCACTAAT+TGG | 0.209362 | 5_3:-8327502 | Msa0796260:CDS |
| TCAATCTTCCGGGACGATTT+TGG | 0.212595 | 5_3:-8328777 | Msa0796260:CDS |
| GGCTGCATTGGAGGAAGATT+TGG | 0.245321 | 5_3:-8326366 | Msa0796260:CDS |
| GATTTCTTCGTCGGAGGATT+CGG | 0.296432 | 5_3:+8329071 | None:intergenic |
| AGGATTCGGGTGAGAGGTTA+AGG | 0.358466 | 5_3:+8329085 | None:intergenic |
| TTAGTATAGGAAAAGATAAA+AGG | 0.359274 | 5_3:+8326472 | None:intergenic |
| TCCAATTAGTGAACGTAAAC+CGG | 0.384708 | 5_3:+8327501 | None:intergenic |
| TGGAGAGGTTGAAGAGAAGA+AGG | 0.387919 | 5_3:-8328826 | Msa0796260:CDS |
| ATTTCTTCGTCGGAGGATTC+GGG | 0.394666 | 5_3:+8329072 | None:intergenic |
| GCTGCATTGGAGGAAGATTT+GGG | 0.396220 | 5_3:-8326365 | Msa0796260:CDS |
| GTTGAGAAAGAATTTAGTAT+AGG | 0.396964 | 5_3:+8326459 | None:intergenic |
| CATTTGTTGTTTCTGACAGC+TGG | 0.407604 | 5_3:+8327285 | None:intergenic |
| CCCATTGGCGATAAGCTTTG+CGG | 0.412096 | 5_3:+8329049 | None:intergenic |
| CGAAATGTTGTTGGGATTGG+CGG | 0.418527 | 5_3:-8327622 | Msa0796260:CDS |
| TGTCAAAACGAAATGTTGTT+GGG | 0.434109 | 5_3:-8327630 | Msa0796260:CDS |
| AAATCTCATGGCTGCATTGG+AGG | 0.439365 | 5_3:-8326375 | Msa0796260:CDS |
| CGTTGAATCTTTCTAATGCA+TGG | 0.443709 | 5_3:-8327313 | Msa0796260:CDS |
| TTGTCAAAACGAAATGTTGT+TGG | 0.453469 | 5_3:-8327631 | Msa0796260:CDS |
| GGCGGCAATTTAGCAGTTGA+AGG | 0.457018 | 5_3:-8327604 | Msa0796260:CDS |
| AAGAAGGGAACATGAGAAGA+TGG | 0.457897 | 5_3:-8328810 | Msa0796260:CDS |
| AAACGAAATGTTGTTGGGAT+TGG | 0.467280 | 5_3:-8327625 | Msa0796260:CDS |
| TGAAGAGATAAAAGCTGAGT+TGG | 0.476797 | 5_3:-8328846 | Msa0796260:CDS |
| TCTAAATCTCATGGCTGCAT+TGG | 0.480181 | 5_3:-8326378 | Msa0796260:CDS |
| TCCGCAAAGCTTATCGCCAA+TGG | 0.485282 | 5_3:-8329050 | Msa0796260:CDS |
| AAGGACCTGTGCCGAGCTAA+AGG | 0.487568 | 5_3:+8326435 | None:intergenic |
| TTTCAGATACAACTCATGTT+GGG | 0.497567 | 5_3:-8326752 | Msa0796260:intron |
| CCGCAAAGCTTATCGCCAAT+GGG | 0.499714 | 5_3:-8329049 | Msa0796260:CDS |
| TGTTGTTTCTGACAGCTGGC+GGG | 0.500265 | 5_3:+8327289 | None:intergenic |
| AGCTTTGCGGATTTCTTCGT+CGG | 0.502755 | 5_3:+8329062 | None:intergenic |
| GGAAGAAAGAAGACGAGAAA+AGG | 0.504085 | 5_3:-8326703 | Msa0796260:CDS |
| TTAACAATGTCTTTGAGAGA+TGG | 0.505493 | 5_3:-8327338 | Msa0796260:CDS |
| AGATAAAAGCTGAGTTGGAG+AGG | 0.513732 | 5_3:-8328841 | Msa0796260:CDS |
| GGAGAGGTTGAAGAGAAGAA+GGG | 0.521692 | 5_3:-8328825 | Msa0796260:CDS |
| ATTTCAGATACAACTCATGT+TGG | 0.526912 | 5_3:-8326753 | Msa0796260:intron |
| CTTTCTCAACTCCTTTAGCT+CGG | 0.528756 | 5_3:-8326446 | Msa0796260:CDS |
| CAACTCCTTTAGCTCGGCAC+AGG | 0.529594 | 5_3:-8326440 | Msa0796260:CDS |
| ATAGAATTTATTGCTTCAGC+CGG | 0.541957 | 5_3:-8327520 | Msa0796260:CDS |
| TTGTTGTTTCTGACAGCTGG+CGG | 0.544720 | 5_3:+8327288 | None:intergenic |
| ATTAAGTCATCAACTTTCTG+AGG | 0.548247 | 5_3:-8327551 | Msa0796260:CDS |
| TCACAACCATCTGTAGCTGT+AGG | 0.549045 | 5_3:-8326728 | Msa0796260:CDS |
| CAGCTGTCAGAAACAACAAA+TGG | 0.555163 | 5_3:-8327284 | Msa0796260:CDS |
| GTTGAAGGACATCAAGGTGG+TGG | 0.555707 | 5_3:-8327589 | Msa0796260:CDS |
| CGTCGGAGGATTCGGGTGAG+AGG | 0.562457 | 5_3:+8329079 | None:intergenic |
| GACTGCCACTGCAGATGTGA+AGG | 0.563742 | 5_3:-8326681 | Msa0796260:CDS |
| TCACACTCATCTGCAACAGC+AGG | 0.565108 | 5_3:-8327362 | Msa0796260:CDS |
| TTAGCAGTTGAAGGACATCA+AGG | 0.567675 | 5_3:-8327595 | Msa0796260:CDS |
| CACAACCATCTGTAGCTGTA+GGG | 0.573415 | 5_3:-8326727 | Msa0796260:CDS |
| TTCCACCCTACAGCTACAGA+TGG | 0.578527 | 5_3:+8326722 | None:intergenic |
| TTTGCGGATTTCTTCGTCGG+AGG | 0.586012 | 5_3:+8329065 | None:intergenic |
| GATGATAAGCTTGTGCCCAT+TGG | 0.590339 | 5_3:+8329034 | None:intergenic |
| CAAATTAGCCAAAATCGTCC+CGG | 0.603920 | 5_3:+8328769 | None:intergenic |
| AACCATCTGTAGCTGTAGGG+TGG | 0.613280 | 5_3:-8326724 | Msa0796260:CDS |
| ATACCGAGCTGATGTCTCGA+AGG | 0.639798 | 5_3:+8326416 | None:intergenic |
| TAATTGGAGTGCAGACATCA+CGG | 0.643892 | 5_3:-8327486 | Msa0796260:intron |
| AAGTACCTTCACATCTGCAG+TGG | 0.655070 | 5_3:+8326676 | None:intergenic |
| AAGGGAACATGAGAAGATGG+TGG | 0.692220 | 5_3:-8328807 | Msa0796260:CDS |
| GCAGTTGAAGGACATCAAGG+TGG | 0.714956 | 5_3:-8327592 | Msa0796260:CDS |
| GGTCCTTCGAGACATCAGCT+CGG | 0.722198 | 5_3:-8326419 | Msa0796260:CDS |
| GCATTGGAGGAAGATTTGGG+AGG | 0.723138 | 5_3:-8326362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTCTCTTTAATTTTTTAT+AGG | + | chr5_3:8327176-8327195 | None:intergenic | 15.0% |
| !!! | GAAACTTTTATTTATAAAAG+TGG | + | chr5_3:8327662-8327681 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATAATTGAGGAA+GGG | + | chr5_3:8327685-8327704 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATAATTGAGGA+AGG | + | chr5_3:8327686-8327705 | None:intergenic | 15.0% |
| !!! | AAATTATATTTTAAGGAACT+TGG | + | chr5_3:8328598-8328617 | None:intergenic | 15.0% |
| !!! | TACAACTTTTAATCAATATA+TGG | + | chr5_3:8328892-8328911 | None:intergenic | 15.0% |
| !! | TAAAAACCATTCTAACAAAA+AGG | + | chr5_3:8327034-8327053 | None:intergenic | 20.0% |
| !!! | GTTTATCTTATAGTTTTTCT+AGG | + | chr5_3:8327274-8327293 | None:intergenic | 20.0% |
| !!! | TTTTTATAGAAATATGTTCG+TGG | - | chr5_3:8327543-8327562 | Msa0796260:CDS | 20.0% |
| !!! | TTTTTAAATAATTGAGGAAG+GGG | + | chr5_3:8327684-8327703 | None:intergenic | 20.0% |
| !! | AACATTCAAATAAAATCCTA+AGG | + | chr5_3:8327782-8327801 | None:intergenic | 20.0% |
| !! | TTAGTATAGGAAAAGATAAA+AGG | + | chr5_3:8329028-8329047 | None:intergenic | 20.0% |
| ! | AGACAGGTTTATGATATTTA+TGG | - | chr5_3:8326579-8326598 | Msa0796260:intron | 25.0% |
| ! | GGTTTATGATATTTATGGTA+TGG | - | chr5_3:8326584-8326603 | Msa0796260:intron | 25.0% |
| ! | TATGATATTTATGGTATGGA+AGG | - | chr5_3:8326588-8326607 | Msa0796260:intron | 25.0% |
| ! | TAAAGAGAAACTACTAAGAA+AGG | - | chr5_3:8327185-8327204 | Msa0796260:intron | 25.0% |
| ! | TTAATGAGTTGTAGATTAGA+CGG | - | chr5_3:8327216-8327235 | Msa0796260:intron | 25.0% |
| ! | TAAACTATTAAGAAAAGTCC+AGG | - | chr5_3:8327289-8327308 | Msa0796260:CDS | 25.0% |
| ! | TTGCAATAGTTTATCGATAT+TGG | - | chr5_3:8327441-8327460 | Msa0796260:intron | 25.0% |
| ! | AAAATTCAATCAAGAACACA+GGG | + | chr5_3:8327527-8327546 | None:intergenic | 25.0% |
| ! | AAAAATTCAATCAAGAACAC+AGG | + | chr5_3:8327528-8327547 | None:intergenic | 25.0% |
| !! | CATTTTAAATTGTCTTAGGT+GGG | + | chr5_3:8327629-8327648 | None:intergenic | 25.0% |
| !! | TGACCATTTTAAATTGTCTT+AGG | + | chr5_3:8327633-8327652 | None:intergenic | 25.0% |
| ! | TCAAATAAAATCCTAAGGAT+GGG | + | chr5_3:8327777-8327796 | None:intergenic | 25.0% |
| ! | TTCAAATAAAATCCTAAGGA+TGG | + | chr5_3:8327778-8327797 | None:intergenic | 25.0% |
| ! | AAATTGTACATAACTTTGTG+CGG | - | chr5_3:8328298-8328317 | Msa0796260:intron | 25.0% |
| !! | GATCGATTTAATGATAACTA+TGG | - | chr5_3:8328346-8328365 | Msa0796260:intron | 25.0% |
| ! | TAAGCAACATACTAAATTCA+AGG | - | chr5_3:8328458-8328477 | Msa0796260:intron | 25.0% |
| ! | AAGCAACATACTAAATTCAA+GGG | - | chr5_3:8328459-8328478 | Msa0796260:intron | 25.0% |
| !! | TGGTTTAGAATTTCTAAATG+TGG | - | chr5_3:8328505-8328524 | Msa0796260:intron | 25.0% |
| !! | GGTTTAGAATTTCTAAATGT+GGG | - | chr5_3:8328506-8328525 | Msa0796260:intron | 25.0% |
| !! | GTTTAGAATTTCTAAATGTG+GGG | - | chr5_3:8328507-8328526 | Msa0796260:intron | 25.0% |
| !! | TTTAGAATTTCTAAATGTGG+GGG | - | chr5_3:8328508-8328527 | Msa0796260:intron | 25.0% |
| ! | GTTGAGAAAGAATTTAGTAT+AGG | + | chr5_3:8329041-8329060 | None:intergenic | 25.0% |
| CAAATCGTTGAAAATTCTCA+TGG | + | chr5_3:8326525-8326544 | None:intergenic | 30.0% | |
| ATCATAAACCTGTCTCTATT+CGG | + | chr5_3:8326574-8326593 | None:intergenic | 30.0% | |
| !! | GATTGAAATTGGTTTGAACT+TGG | - | chr5_3:8326610-8326629 | Msa0796260:intron | 30.0% |
| GATAAGCTAGTGTATTGAAA+TGG | - | chr5_3:8326917-8326936 | Msa0796260:intron | 30.0% | |
| ! | TGCATACCTTTTTGTTAGAA+TGG | - | chr5_3:8327025-8327044 | Msa0796260:intron | 30.0% |
| GATAGTAATCAAATCACTAG+AGG | - | chr5_3:8327238-8327257 | Msa0796260:intron | 30.0% | |
| ATGGATATGATAGAACATTG+CGG | - | chr5_3:8327327-8327346 | Msa0796260:CDS | 30.0% | |
| ATCGATAAACTATTGCAACA+AGG | + | chr5_3:8327439-8327458 | None:intergenic | 30.0% | |
| ! | CCATTTTAAATTGTCTTAGG+TGG | + | chr5_3:8327630-8327649 | None:intergenic | 30.0% |
| CCACCTAAGACAATTTAAAA+TGG | - | chr5_3:8327627-8327646 | Msa0796260:CDS | 30.0% | |
| GAAGCAATTATTTAACTGTC+AGG | + | chr5_3:8327724-8327743 | None:intergenic | 30.0% | |
| TTGTCAAAACGAAATGTTGT+TGG | - | chr5_3:8327866-8327885 | Msa0796260:intron | 30.0% | |
| TGTCAAAACGAAATGTTGTT+GGG | - | chr5_3:8327867-8327886 | Msa0796260:intron | 30.0% | |
| ATTAAGTCATCAACTTTCTG+AGG | - | chr5_3:8327946-8327965 | Msa0796260:intron | 30.0% | |
| ATAGAATTTATTGCTTCAGC+CGG | - | chr5_3:8327977-8327996 | Msa0796260:intron | 30.0% | |
| GAAACACATAAATCATCACT+AGG | + | chr5_3:8328087-8328106 | None:intergenic | 30.0% | |
| ! | TTAACAATGTCTTTGAGAGA+TGG | - | chr5_3:8328159-8328178 | Msa0796260:intron | 30.0% |
| TTGCTTATACAAAGTAATCC+TGG | + | chr5_3:8328445-8328464 | None:intergenic | 30.0% | |
| TACTAAATTCAAGGGAACAA+AGG | - | chr5_3:8328467-8328486 | Msa0796260:intron | 30.0% | |
| GTCAACAAAGTTTGTATGTT+TGG | - | chr5_3:8328560-8328579 | Msa0796260:intron | 30.0% | |
| ! | CTGGCGCAAATTATATTTTA+AGG | + | chr5_3:8328605-8328624 | None:intergenic | 30.0% |
| ! | AATATAATTTGCGCCAGAAT+TGG | - | chr5_3:8328608-8328627 | Msa0796260:intron | 30.0% |
| ATTTCAGATACAACTCATGT+TGG | - | chr5_3:8328744-8328763 | Msa0796260:intron | 30.0% | |
| TTTCAGATACAACTCATGTT+GGG | - | chr5_3:8328745-8328764 | Msa0796260:intron | 30.0% | |
| ATATATGGTCGTAAAATGTC+CGG | + | chr5_3:8328877-8328896 | None:intergenic | 30.0% | |
| CTAAGACCATTATCTAAAGA+TGG | + | chr5_3:8328976-8328995 | None:intergenic | 30.0% | |
| ! | CGATTTTCTTCTAAATCTCA+TGG | - | chr5_3:8329110-8329129 | Msa0796260:CDS | 30.0% |
| ! | CATCTTTCATGAGAGGATTT+TGG | + | chr5_3:8326499-8326518 | None:intergenic | 35.0% |
| TGGTATGGAAGGATTGAAAT+TGG | - | chr5_3:8326599-8326618 | Msa0796260:intron | 35.0% | |
| TGAAGAGATAAAAGCTGAGT+TGG | - | chr5_3:8326651-8326670 | Msa0796260:CDS | 35.0% | |
| ! | TTGATAAGCTAGCTTGTAGT+TGG | - | chr5_3:8326889-8326908 | Msa0796260:intron | 35.0% |
| TGTATTGAAATGGCAGTGTT+TGG | - | chr5_3:8326927-8326946 | Msa0796260:intron | 35.0% | |
| GATAGTGAATGAGCTTATAG+CGG | - | chr5_3:8327095-8327114 | Msa0796260:intron | 35.0% | |
| AAAGTCCAGGATTAATGAAC+TGG | - | chr5_3:8327302-8327321 | Msa0796260:CDS | 35.0% | |
| CATATCCAGTTCATTAATCC+TGG | + | chr5_3:8327310-8327329 | None:intergenic | 35.0% | |
| CAGGATTAATGAACTGGATA+TGG | - | chr5_3:8327308-8327327 | Msa0796260:CDS | 35.0% | |
| ! | AAGCTTTATCCCATTAAGTG+GGG | + | chr5_3:8327376-8327395 | None:intergenic | 35.0% |
| ! | CAAGCTTTATCCCATTAAGT+GGG | + | chr5_3:8327377-8327396 | None:intergenic | 35.0% |
| ! | TCAAGCTTTATCCCATTAAG+TGG | + | chr5_3:8327378-8327397 | None:intergenic | 35.0% |
| AGTGTTAATGTACGCAATGA+TGG | - | chr5_3:8327470-8327489 | Msa0796260:intron | 35.0% | |
| AAACGAAATGTTGTTGGGAT+TGG | - | chr5_3:8327872-8327891 | Msa0796260:intron | 35.0% | |
| TCCAATTAGTGAACGTAAAC+CGG | + | chr5_3:8327999-8328018 | None:intergenic | 35.0% | |
| CGTTGAATCTTTCTAATGCA+TGG | - | chr5_3:8328184-8328203 | Msa0796260:intron | 35.0% | |
| AGATGAGAAAGAAAAGTCCA+AGG | + | chr5_3:8328257-8328276 | None:intergenic | 35.0% | |
| AAAATAATGTCCACTGCATC+TGG | - | chr5_3:8328404-8328423 | Msa0796260:intron | 35.0% | |
| !! | ACAAAGTAATCCTGGTTTTC+TGG | + | chr5_3:8328437-8328456 | None:intergenic | 35.0% |
| ACACTCATCTATTACAAGGT+CGG | + | chr5_3:8328542-8328561 | None:intergenic | 35.0% | |
| GTTGACACTCATCTATTACA+AGG | + | chr5_3:8328546-8328565 | None:intergenic | 35.0% | |
| ACACTTATATGAGCCAATTC+TGG | + | chr5_3:8328624-8328643 | None:intergenic | 35.0% | |
| ! | GAATTGGCTCATATAAGTGT+TGG | - | chr5_3:8328624-8328643 | Msa0796260:intron | 35.0% |
| ! | AACTCACCAATGCTTTGAAT+TGG | + | chr5_3:8328650-8328669 | None:intergenic | 35.0% |
| !! | ATTCAAAGCATTGGTGAGTT+TGG | - | chr5_3:8328650-8328669 | Msa0796260:intron | 35.0% |
| AATCTGTTTCATAATCCCTG+AGG | + | chr5_3:8328686-8328705 | None:intergenic | 35.0% | |
| CAGGGATTATGAAACAGATT+TGG | - | chr5_3:8328686-8328705 | Msa0796260:intron | 35.0% | |
| GCAAAATCAGTCATTTGTAC+CGG | - | chr5_3:8328855-8328874 | Msa0796260:intron | 35.0% | |
| GTGCTTCCATCTTTAGATAA+TGG | - | chr5_3:8328967-8328986 | Msa0796260:intron | 35.0% | |
| !! | AGAGGATTTTGGTACTTGTC+TGG | + | chr5_3:8326488-8326507 | None:intergenic | 40.0% |
| TTCAGATTCCGAATAGAGAC+AGG | - | chr5_3:8326563-8326582 | Msa0796260:intron | 40.0% | |
| !! | ATTGGTTTGAACTTGGTTCG+AGG | - | chr5_3:8326617-8326636 | Msa0796260:intron | 40.0% |
| ! | AGATAAAAGCTGAGTTGGAG+AGG | - | chr5_3:8326656-8326675 | Msa0796260:CDS | 40.0% |
| AAGAAGGGAACATGAGAAGA+TGG | - | chr5_3:8326687-8326706 | Msa0796260:CDS | 40.0% | |
| ! | GTGGCAAGTTTTCAATCTTC+CGG | - | chr5_3:8326709-8326728 | Msa0796260:CDS | 40.0% |
| ! | TGGCAAGTTTTCAATCTTCC+GGG | - | chr5_3:8326710-8326729 | Msa0796260:CDS | 40.0% |
| CAAATTAGCCAAAATCGTCC+CGG | + | chr5_3:8326731-8326750 | None:intergenic | 40.0% | |
| !! | AGCTAGCTTGTAGTTGATAG+TGG | - | chr5_3:8327128-8327147 | Msa0796260:intron | 40.0% |
| TTTATCCCATTAAGTGGGGT+CGG | + | chr5_3:8327372-8327391 | None:intergenic | 40.0% | |
| TGGACAAAACTGAAATCTCC+TGG | - | chr5_3:8327490-8327509 | Msa0796260:CDS | 40.0% | |
| AAATATGTTCGTGGTCCAAG+AGG | - | chr5_3:8327552-8327571 | Msa0796260:CDS | 40.0% | |
| TACCATTAACTGACACCTCT+TGG | + | chr5_3:8327570-8327589 | None:intergenic | 40.0% | |
| AGCTGGACTTTGTAATCTCA+AGG | - | chr5_3:8327589-8327608 | Msa0796260:CDS | 40.0% | |
| GCTGGACTTTGTAATCTCAA+GGG | - | chr5_3:8327590-8327609 | Msa0796260:CDS | 40.0% | |
| ! | GATGTTTCTGAGCATCAGAA+TGG | - | chr5_3:8327817-8327836 | Msa0796260:intron | 40.0% |
| TTAGCAGTTGAAGGACATCA+AGG | - | chr5_3:8327902-8327921 | Msa0796260:intron | 40.0% | |
| TAATTGGAGTGCAGACATCA+CGG | - | chr5_3:8328011-8328030 | Msa0796260:intron | 40.0% | |
| AGTGTGATGATATAACGCTG+GGG | + | chr5_3:8328122-8328141 | None:intergenic | 40.0% | |
| GAGTGTGATGATATAACGCT+GGG | + | chr5_3:8328123-8328142 | None:intergenic | 40.0% | |
| TGAGTGTGATGATATAACGC+TGG | + | chr5_3:8328124-8328143 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTTTCTGACAGC+TGG | + | chr5_3:8328215-8328234 | None:intergenic | 40.0% |
| CAGCTGTCAGAAACAACAAA+TGG | - | chr5_3:8328213-8328232 | Msa0796260:intron | 40.0% | |
| AAAGGAATGATCTGTCTGCA+TGG | - | chr5_3:8328485-8328504 | Msa0796260:intron | 40.0% | |
| TGTTGGCCAATTCAAAGCAT+TGG | - | chr5_3:8328641-8328660 | Msa0796260:intron | 40.0% | |
| !!! | TTTGGCTTTTTGTTGCCTCA+GGG | - | chr5_3:8328668-8328687 | Msa0796260:intron | 40.0% |
| GGAAGAAAGAAGACGAGAAA+AGG | - | chr5_3:8328794-8328813 | Msa0796260:CDS | 40.0% | |
| ! | TCCACCATTCTACTCTGAAA+AGG | - | chr5_3:8328920-8328939 | Msa0796260:intron | 40.0% |
| ! | CCACCATTCTACTCTGAAAA+GGG | - | chr5_3:8328921-8328940 | Msa0796260:intron | 40.0% |
| ! | CACCATTCTACTCTGAAAAG+GGG | - | chr5_3:8328922-8328941 | Msa0796260:intron | 40.0% |
| CTTTCTCAACTCCTTTAGCT+CGG | - | chr5_3:8329051-8329070 | Msa0796260:CDS | 40.0% | |
| TCTAAATCTCATGGCTGCAT+TGG | - | chr5_3:8329119-8329138 | Msa0796260:CDS | 40.0% | |
| ATTTCTTCGTCGGAGGATTC+GGG | + | chr5_3:8326428-8326447 | None:intergenic | 45.0% | |
| GATTTCTTCGTCGGAGGATT+CGG | + | chr5_3:8326429-8326448 | None:intergenic | 45.0% | |
| AGCTTTGCGGATTTCTTCGT+CGG | + | chr5_3:8326438-8326457 | None:intergenic | 45.0% | |
| GATGATAAGCTTGTGCCCAT+TGG | + | chr5_3:8326466-8326485 | None:intergenic | 45.0% | |
| ATGGCAGCATCTTTCATGAG+AGG | + | chr5_3:8326506-8326525 | None:intergenic | 45.0% | |
| ! | GTTTGAACTTGGTTCGAGGT+TGG | - | chr5_3:8326621-8326640 | Msa0796260:intron | 45.0% |
| TGGAGAGGTTGAAGAGAAGA+AGG | - | chr5_3:8326671-8326690 | Msa0796260:CDS | 45.0% | |
| GGAGAGGTTGAAGAGAAGAA+GGG | - | chr5_3:8326672-8326691 | Msa0796260:CDS | 45.0% | |
| AAGGGAACATGAGAAGATGG+TGG | - | chr5_3:8326690-8326709 | Msa0796260:CDS | 45.0% | |
| ! | TCAATCTTCCGGGACGATTT+TGG | - | chr5_3:8326720-8326739 | Msa0796260:CDS | 45.0% |
| TCTGTGCCGCAGTATTTAGA+TGG | - | chr5_3:8326751-8326770 | Msa0796260:intron | 45.0% | |
| CCGTCACCATCTAAATACTG+CGG | + | chr5_3:8326760-8326779 | None:intergenic | 45.0% | |
| CCGCAGTATTTAGATGGTGA+CGG | - | chr5_3:8326757-8326776 | Msa0796260:intron | 45.0% | |
| !! | ATGGTGACGGTCTCTTTAGA+GGG | - | chr5_3:8326770-8326789 | Msa0796260:intron | 45.0% |
| ! | GTTGATAAGCGAACTGATCG+TGG | - | chr5_3:8326848-8326867 | Msa0796260:intron | 45.0% |
| CACAGGGCATAATATCATCC+AGG | + | chr5_3:8327511-8327530 | None:intergenic | 45.0% | |
| !! | GTCCAAGAGGTGTCAGTTAA+TGG | - | chr5_3:8327565-8327584 | Msa0796260:CDS | 45.0% |
| AGGTGTCAGTTAATGGTAGC+TGG | - | chr5_3:8327572-8327591 | Msa0796260:CDS | 45.0% | |
| GAGTTGAGATACCCATCCTT+AGG | - | chr5_3:8327763-8327782 | Msa0796260:intron | 45.0% | |
| CGAAATGTTGTTGGGATTGG+CGG | - | chr5_3:8327875-8327894 | Msa0796260:intron | 45.0% | |
| ! | GCCGGTTTACGTTCACTAAT+TGG | - | chr5_3:8327995-8328014 | Msa0796260:intron | 45.0% |
| !! | TTGTTGTTTCTGACAGCTGG+CGG | + | chr5_3:8328212-8328231 | None:intergenic | 45.0% |
| CATGTATGCTCTCTATGCCT+TGG | - | chr5_3:8328237-8328256 | Msa0796260:intron | 45.0% | |
| TGGCTTTCAACCAGAAAACC+AGG | - | chr5_3:8328424-8328443 | Msa0796260:intron | 45.0% | |
| !!! | GTTTGGCTTTTTGTTGCCTC+AGG | - | chr5_3:8328667-8328686 | Msa0796260:intron | 45.0% |
| TCACAACCATCTGTAGCTGT+AGG | - | chr5_3:8328769-8328788 | Msa0796260:CDS | 45.0% | |
| CACAACCATCTGTAGCTGTA+GGG | - | chr5_3:8328770-8328789 | Msa0796260:CDS | 45.0% | |
| AAGTACCTTCACATCTGCAG+TGG | + | chr5_3:8328824-8328843 | None:intergenic | 45.0% | |
| ! | CCCTTTTCAGAGTAGAATGG+TGG | + | chr5_3:8328924-8328943 | None:intergenic | 45.0% |
| ! | CTCCCCTTTTCAGAGTAGAA+TGG | + | chr5_3:8328927-8328946 | None:intergenic | 45.0% |
| AAATCTCATGGCTGCATTGG+AGG | - | chr5_3:8329122-8329141 | Msa0796260:CDS | 45.0% | |
| !!! | TTTATTTTTTTAAATAATTG+AGG | + | chr5_3:8327690-8327709 | None:intergenic | 5.0% |
| AGGATTCGGGTGAGAGGTTA+AGG | + | chr5_3:8326415-8326434 | None:intergenic | 50.0% | |
| TTTGCGGATTTCTTCGTCGG+AGG | + | chr5_3:8326435-8326454 | None:intergenic | 50.0% | |
| TCCGCAAAGCTTATCGCCAA+TGG | - | chr5_3:8326447-8326466 | Msa0796260:CDS | 50.0% | |
| CCCATTGGCGATAAGCTTTG+CGG | + | chr5_3:8326451-8326470 | None:intergenic | 50.0% | |
| CCGCAAAGCTTATCGCCAAT+GGG | - | chr5_3:8326448-8326467 | Msa0796260:CDS | 50.0% | |
| !! | GATGGTGACGGTCTCTTTAG+AGG | - | chr5_3:8326769-8326788 | Msa0796260:intron | 50.0% |
| ! | GACGGTCTCTTTAGAGGGTA+TGG | - | chr5_3:8326775-8326794 | Msa0796260:intron | 50.0% |
| ! | AGCTAGCTTGTAGTTGGCAG+CGG | - | chr5_3:8326895-8326914 | Msa0796260:intron | 50.0% |
| ATGTAGCCGACCCCACTTAA+TGG | - | chr5_3:8327363-8327382 | Msa0796260:CDS | 50.0% | |
| TGTAGCCGACCCCACTTAAT+GGG | - | chr5_3:8327364-8327383 | Msa0796260:CDS | 50.0% | |
| GGCGGCAATTTAGCAGTTGA+AGG | - | chr5_3:8327893-8327912 | Msa0796260:intron | 50.0% | |
| GCAGTTGAAGGACATCAAGG+TGG | - | chr5_3:8327905-8327924 | Msa0796260:intron | 50.0% | |
| GTTGAAGGACATCAAGGTGG+TGG | - | chr5_3:8327908-8327927 | Msa0796260:intron | 50.0% | |
| TCACACTCATCTGCAACAGC+AGG | - | chr5_3:8328135-8328154 | Msa0796260:intron | 50.0% | |
| !! | TGTTGTTTCTGACAGCTGGC+GGG | + | chr5_3:8328211-8328230 | None:intergenic | 50.0% |
| TGGTTGAAAGCCAGATGCAG+TGG | + | chr5_3:8328417-8328436 | None:intergenic | 50.0% | |
| AACCATCTGTAGCTGTAGGG+TGG | - | chr5_3:8328773-8328792 | Msa0796260:CDS | 50.0% | |
| TTCCACCCTACAGCTACAGA+TGG | + | chr5_3:8328778-8328797 | None:intergenic | 50.0% | |
| ATACCGAGCTGATGTCTCGA+AGG | + | chr5_3:8329084-8329103 | None:intergenic | 50.0% | |
| GGCTGCATTGGAGGAAGATT+TGG | - | chr5_3:8329131-8329150 | Msa0796260:CDS | 50.0% | |
| TGGAGTGCAGACATCACGGT+TGG | - | chr5_3:8328015-8328034 | Msa0796260:intron | 55.0% | |
| GACTGCCACTGCAGATGTGA+AGG | - | chr5_3:8328816-8328835 | Msa0796260:CDS | 55.0% | |
| ! | CAACTCCTTTAGCTCGGCAC+AGG | - | chr5_3:8329057-8329076 | Msa0796260:CDS | 55.0% |
| AAGGACCTGTGCCGAGCTAA+AGG | + | chr5_3:8329065-8329084 | None:intergenic | 55.0% | |
| GGTCCTTCGAGACATCAGCT+CGG | - | chr5_3:8329078-8329097 | Msa0796260:CDS | 55.0% | |
| CGTCGGAGGATTCGGGTGAG+AGG | + | chr5_3:8326421-8326440 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8326365 | 8329154 | 8326365 | ID=Msa0796260;Name=Msa0796260 |
| chr5_3 | mRNA | 8326365 | 8329154 | 8326365 | ID=Msa0796260-mRNA-1;Parent=Msa0796260;Name=Msa0796260-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.4|0.33|1|0.8|0.66|6|0|278 |
| chr5_3 | exon | 8329027 | 8329154 | 8329027 | ID=Msa0796260-mRNA-1:exon:3479;Parent=Msa0796260-mRNA-1 |
| chr5_3 | exon | 8328758 | 8328871 | 8328758 | ID=Msa0796260-mRNA-1:exon:3478;Parent=Msa0796260-mRNA-1 |
| chr5_3 | exon | 8327487 | 8327684 | 8327487 | ID=Msa0796260-mRNA-1:exon:3477;Parent=Msa0796260-mRNA-1 |
| chr5_3 | exon | 8327280 | 8327394 | 8327280 | ID=Msa0796260-mRNA-1:exon:3476;Parent=Msa0796260-mRNA-1 |
| chr5_3 | exon | 8326649 | 8326768 | 8326649 | ID=Msa0796260-mRNA-1:exon:3475;Parent=Msa0796260-mRNA-1 |
| chr5_3 | exon | 8326365 | 8326523 | 8326365 | ID=Msa0796260-mRNA-1:exon:3474;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8329027 | 8329154 | 8329027 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8328758 | 8328871 | 8328758 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8327487 | 8327684 | 8327487 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8327280 | 8327394 | 8327280 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8326649 | 8326768 | 8326649 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| chr5_3 | CDS | 8326365 | 8326523 | 8326365 | ID=Msa0796260-mRNA-1:cds;Parent=Msa0796260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
