AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337060 MtrunA17_Chr2g0324061 94.154 479 19 1 1 479 1 470 0.0 885
Msa0337060 MtrunA17_Chr4g0022171 80.247 486 73 6 1 479 1 470 0.0 767
Msa0337060 MtrunA17_Chr7g0249421 50.110 453 191 6 45 476 50 488 3.02e-146 427
Msa0337060 MtrunA17_Chr7g0221691 48.712 427 191 9 1 415 42 452 1.34e-130 386
Msa0337060 MtrunA17_Chr7g0243571 44.630 419 188 7 56 473 57 432 1.78e-115 347
Msa0337060 MtrunA17_Chr8g0342431 46.961 362 129 7 45 372 40 372 1.64e-103 315
Msa0337060 MtrunA17_Chr7g0272061 45.732 328 163 4 55 380 55 369 3.38e-102 310
Msa0337060 MtrunA17_Chr4g0067711 47.267 311 142 5 63 372 63 352 4.27e-102 310
Msa0337060 MtrunA17_Chr2g0295401 48.243 313 140 5 61 372 62 353 1.14e-101 308
Msa0337060 MtrunA17_Chr4g0004971 46.341 328 150 6 51 373 38 344 2.12e-100 305
Msa0337060 MtrunA17_Chr1g0192421 45.141 319 153 4 55 372 53 350 7.94e-100 303
Msa0337060 MtrunA17_Chr1g0151781 47.664 321 146 4 55 375 33 331 7.23e-89 275
Msa0337060 MtrunA17_Chr4g0066371 27.414 321 168 10 73 374 68 342 9.87e-26 108
Msa0337060 MtrunA17_Chr6g0486661 29.938 324 159 12 73 374 106 383 2.09e-25 110
Msa0337060 MtrunA17_Chr5g0396731 31.457 302 141 10 44 334 54 300 8.35e-24 102
Msa0337060 MtrunA17_Chr2g0286951 28.267 329 171 11 73 382 69 351 1.16e-22 100
Msa0337060 MtrunA17_Chr3g0135961 27.742 310 160 12 25 331 236 484 4.78e-19 90.1
Msa0337060 MtrunA17_Chr3g0136711 30.672 238 129 8 147 381 87 291 7.59e-18 84.0
Msa0337060 MtrunA17_Chr5g0435721 35.294 187 83 7 159 332 258 419 1.13e-17 85.5
Msa0337060 MtrunA17_Chr6g0483411 29.565 230 114 8 160 371 119 318 1.92e-17 83.2
Msa0337060 MtrunA17_Chr1g0150451 32.353 204 111 6 147 349 130 307 4.86e-17 82.4
Msa0337060 MtrunA17_Chr4g0070871 28.279 244 126 8 88 331 251 445 2.12e-16 81.6
Msa0337060 MtrunA17_Chr1g0212961 29.811 265 112 11 90 349 126 321 3.57e-16 79.7
Msa0337060 MtrunA17_Chr1g0150781 26.415 318 165 12 17 331 237 488 8.43e-15 76.6
Msa0337060 MtrunA17_Chr2g0279151 31.068 206 115 8 147 351 87 266 1.30e-14 74.3
Msa0337060 MtrunA17_Chr4g0050381 30.583 206 110 10 148 349 84 260 2.61e-14 73.2
Msa0337060 MtrunA17_Chr2g0299981 27.907 258 151 8 76 327 248 476 2.72e-14 75.1
Msa0337060 MtrunA17_Chr1g0175381 26.524 328 174 16 87 385 76 365 5.18e-14 73.6
Msa0337060 MtrunA17_Chr1g0194191 28.676 272 130 13 90 351 118 335 6.91e-14 73.2
Msa0337060 MtrunA17_Chr2g0317021 34.921 189 88 9 186 372 177 332 1.05e-13 72.0
Msa0337060 MtrunA17_Chr3g0115851 33.019 212 101 11 165 371 106 281 1.21e-13 71.2
Msa0337060 MtrunA17_Chr8g0360351 33.163 196 101 9 158 349 96 265 1.50e-13 70.9
Msa0337060 MtrunA17_Chr3g0136811 27.458 295 152 12 65 332 28 287 6.42e-13 70.1
Msa0337060 MtrunA17_Chr1g0158781 31.609 174 92 5 159 332 184 330 1.10e-12 69.7
Msa0337060 MtrunA17_Chr3g0126511 27.799 259 125 8 92 349 127 324 3.27e-12 67.8
Msa0337060 MtrunA17_Chr4g0051661 32.984 191 98 8 161 349 219 381 4.03e-12 67.8
Msa0337060 MtrunA17_Chr8g0371321 25.449 334 157 14 90 381 79 362 4.93e-12 67.4
Msa0337060 MtrunA17_Chr5g0407161 26.178 191 104 6 149 332 148 308 1.72e-11 65.9
Msa0337060 MtrunA17_Chr3g0144111 29.064 203 95 9 162 351 47 213 1.82e-11 64.3
Msa0337060 MtrunA17_Chr4g0001761 26.441 295 155 12 65 332 28 287 9.10e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337060 AT4G03415.1 73.144 458 101 6 21 476 28 465 0.0 629
Msa0337060 AT4G03415.3 73.144 458 101 6 21 476 28 465 0.0 629
Msa0337060 AT4G03415.2 73.144 458 101 6 21 476 28 465 0.0 629
Msa0337060 AT1G03590.1 66.183 482 140 5 1 479 1 462 0.0 622
Msa0337060 AT1G16220.1 48.678 454 188 10 42 472 46 477 1.81e-144 423
Msa0337060 AT3G02750.2 47.316 503 219 9 1 472 1 488 3.11e-142 417
Msa0337060 AT3G02750.1 47.316 503 219 9 1 472 1 488 3.11e-142 417
Msa0337060 AT1G79630.1 47.894 451 188 8 51 472 58 490 3.42e-141 415
Msa0337060 AT1G79630.8 47.894 451 188 8 51 472 54 486 5.47e-141 414
Msa0337060 AT5G36250.2 47.778 450 169 8 45 472 52 457 7.57e-139 407
Msa0337060 AT5G36250.1 47.416 445 164 8 45 472 52 443 3.27e-136 400
Msa0337060 AT3G02750.3 44.238 538 219 10 1 472 1 523 9.02e-134 397
Msa0337060 AT1G79630.2 47.031 421 176 8 81 472 18 420 1.68e-125 372
Msa0337060 AT1G79630.7 47.031 421 176 8 81 472 18 420 1.68e-125 372
Msa0337060 AT1G79630.6 45.729 398 170 7 103 472 1 380 1.76e-111 335
Msa0337060 AT1G79630.3 45.729 398 170 7 103 472 1 380 1.76e-111 335
Msa0337060 AT1G79630.4 45.729 398 170 7 103 472 1 380 1.76e-111 335
Msa0337060 AT1G79630.5 45.729 398 170 7 103 472 1 380 1.76e-111 335
Msa0337060 AT5G36250.3 53.873 284 117 3 45 314 52 335 1.23e-106 321
Msa0337060 AT3G05640.2 45.963 322 147 4 52 372 54 349 1.76e-101 308
Msa0337060 AT3G05640.1 45.963 322 147 4 52 372 54 349 1.76e-101 308
Msa0337060 AT3G05640.3 45.963 322 147 4 52 372 54 349 1.76e-101 308
Msa0337060 AT5G01700.2 48.773 326 141 5 52 375 39 340 3.51e-101 308
Msa0337060 AT5G01700.1 50.321 312 129 5 66 375 4 291 1.14e-100 305
Msa0337060 AT5G27930.1 46.106 321 146 4 55 371 56 353 3.13e-100 305
Msa0337060 AT5G27930.2 46.106 321 146 4 55 371 56 353 3.13e-100 305
Msa0337060 AT3G16800.2 41.121 321 159 4 54 372 56 348 8.82e-82 257
Msa0337060 AT3G16800.1 41.121 321 159 4 54 372 56 348 8.82e-82 257
Msa0337060 AT3G16800.3 41.121 321 159 4 54 372 56 348 8.82e-82 257
Msa0337060 AT5G27930.3 45.038 262 126 3 56 313 57 304 1.52e-81 256
Msa0337060 AT4G32950.1 40.052 382 167 9 1 379 1 323 7.17e-78 246
Msa0337060 AT5G26010.1 42.767 318 149 6 59 375 42 327 8.76e-76 241
Msa0337060 AT3G16800.4 40.214 281 139 3 93 372 1 253 3.53e-69 221
Msa0337060 AT3G16800.6 40.214 281 139 3 93 372 1 253 3.53e-69 221
Msa0337060 AT4G32950.2 40.127 314 135 8 1 311 1 264 1.73e-60 200
Msa0337060 AT3G16800.5 35.519 183 97 3 54 234 56 219 3.27e-32 123
Msa0337060 AT2G20050.1 30.000 340 167 12 73 392 125 413 1.02e-28 120
Msa0337060 AT2G20050.2 30.000 340 167 12 73 392 125 413 1.10e-28 120
Msa0337060 AT3G11410.1 35.472 265 125 11 68 326 112 336 3.99e-21 95.5
Msa0337060 AT3G06270.1 26.645 304 153 11 73 355 70 324 1.35e-19 90.5
Msa0337060 AT5G59220.1 32.056 287 110 14 68 332 119 342 3.24e-19 90.1
Msa0337060 AT1G07430.1 29.467 319 165 13 34 340 92 362 1.55e-18 88.2
Msa0337060 AT5G10740.1 33.654 208 107 6 147 351 86 265 2.06e-18 87.0
Msa0337060 AT5G10740.2 33.654 208 107 6 147 351 86 265 2.06e-18 87.0
Msa0337060 AT4G28400.3 34.804 204 106 9 147 349 67 244 2.91e-18 85.1
Msa0337060 AT5G24940.1 33.010 206 111 6 147 351 86 265 4.41e-18 87.0
Msa0337060 AT4G28400.1 34.804 204 106 9 147 349 89 266 4.73e-18 84.7
Msa0337060 AT4G31750.2 32.093 215 110 8 162 373 101 282 4.30e-17 82.4
Msa0337060 AT4G31750.1 31.925 213 113 7 162 373 101 282 5.19e-17 82.0
Msa0337060 AT4G31750.3 31.925 213 113 7 162 373 101 282 5.19e-17 82.0
Msa0337060 AT1G72770.4 31.405 242 133 8 90 331 238 446 1.12e-16 82.8
Msa0337060 AT1G72770.1 31.405 242 133 8 90 331 238 446 1.12e-16 82.8
Msa0337060 AT1G72770.3 31.405 242 133 8 90 331 238 446 1.12e-16 82.8
Msa0337060 AT2G29380.1 30.282 284 119 14 68 331 85 309 2.24e-16 80.9
Msa0337060 AT1G43900.1 30.502 259 117 9 90 347 154 350 1.12e-15 79.0
Msa0337060 AT1G78200.5 33.161 193 105 6 160 351 54 223 4.07e-15 75.5
Msa0337060 AT1G78200.4 33.161 193 105 6 160 351 54 223 4.07e-15 75.5
Msa0337060 AT1G78200.1 32.394 213 114 7 160 371 99 282 5.06e-15 75.9
Msa0337060 AT1G78200.3 32.394 213 114 7 160 371 99 282 5.06e-15 75.9
Msa0337060 AT1G78200.2 32.394 213 114 7 160 371 99 282 5.06e-15 75.9
Msa0337060 AT2G20630.1 32.843 204 110 9 147 349 85 262 3.71e-14 73.2
Msa0337060 AT2G20630.2 32.843 204 110 9 147 349 85 262 5.25e-14 72.8
Msa0337060 AT5G53140.1 29.902 204 116 5 147 349 154 331 7.71e-14 73.6
Msa0337060 AT5G53140.2 29.902 204 116 5 147 349 154 331 7.71e-14 73.6
Msa0337060 AT3G15260.2 32.995 197 102 9 157 349 102 272 1.98e-12 68.2
Msa0337060 AT3G15260.1 32.995 197 102 9 157 349 102 272 1.98e-12 68.2
Msa0337060 AT1G18030.1 26.522 230 121 8 160 371 149 348 5.68e-12 67.4
Msa0337060 AT4G28400.2 34.104 173 94 9 147 317 89 243 7.68e-12 65.9
Msa0337060 AT2G34740.3 35.429 175 88 10 140 310 131 284 1.83e-11 65.5
Msa0337060 AT2G34740.2 35.429 175 88 10 140 310 149 302 2.21e-11 65.5
Msa0337060 AT1G07160.1 28.241 216 128 6 157 372 188 376 5.43e-11 64.7

Find 127 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTGAAACTAGCTTTAT+TGG 0.084396 2_4:+56841044 None:intergenic
TCTTTCTGGAACTGAGAAAA+TGG 0.194323 2_4:-56841573 Msa0337060:exon
GCTGAAGTCTCATGCAAATT+TGG 0.195372 2_4:-56840914 Msa0337060:CDS
TTCTATAGTGAGAGGATCTT+TGG 0.223060 2_4:-56841706 Msa0337060:five_prime_UTR
TAAATATCCAACTTCGAAAA+TGG 0.246853 2_4:-56839860 Msa0337060:CDS
GATGAGGTCAATGTGAATTC+TGG 0.264414 2_4:-56842017 Msa0337060:five_prime_UTR
AATTTAATATTTAATATATA+TGG 0.273123 2_4:+56841857 None:intergenic
TGCCTGAATGCCTGTTGCTT+TGG 0.290415 2_4:+56839746 None:intergenic
TTGAAAATTGTTTATTCAGC+TGG 0.344033 2_4:-56839488 Msa0337060:exon
TATGACACACTTGGCAAATC+AGG 0.348941 2_4:+56840498 None:intergenic
ACCTAGTTGCACGCAAAGTT+AGG 0.349058 2_4:-56841128 Msa0337060:CDS
CTTTCTGGAACTGAGAAAAT+GGG 0.350287 2_4:-56841572 Msa0337060:exon
TGACCATCATCTGACTCAAC+TGG 0.351058 2_4:+56839721 None:intergenic
GTGAGAGGATCTTTGGAATC+AGG 0.358603 2_4:-56841699 Msa0337060:five_prime_UTR
AATTTGTTCATGGGCAATAT+CGG 0.379510 2_4:-56840597 Msa0337060:CDS
TCTAGATGTTCATTTAATCT+TGG 0.380127 2_4:-56842152 Msa0337060:five_prime_UTR
TTAGCAATGGCTAGAGCATT+TGG 0.381409 2_4:-56840287 Msa0337060:CDS
ACTCCATCTTGTCTTGAAAT+CGG 0.382346 2_4:-56841506 Msa0337060:CDS
TCAGGGTTCAAATTTGTTCA+TGG 0.382381 2_4:-56840607 Msa0337060:intron
ATCAAGATGCCATGATTGTA+TGG 0.384111 2_4:-56841337 Msa0337060:CDS
CCATTACTAAATATTCTGTT+TGG 0.386029 2_4:+56841410 None:intergenic
TTCTTGTATATTTACGCAGC+AGG 0.386376 2_4:-56841375 Msa0337060:CDS
TTATCCATTCATATAGCTTA+CGG 0.391785 2_4:-56841804 Msa0337060:five_prime_UTR
CACACAAATTTAGATATTTG+TGG 0.393174 2_4:+56842126 None:intergenic
ATCTGTGACGGTAGTGAAAC+AGG 0.395381 2_4:-56840869 Msa0337060:intron
ACATGTGTAGGAGGAGGAAA+AGG 0.396810 2_4:-56839640 Msa0337060:CDS
AACCACACCCTACAAACTTC+TGG 0.399419 2_4:+56840332 None:intergenic
TTTACTCAGTTGACCAAGCT+TGG 0.408492 2_4:-56841672 Msa0337060:five_prime_UTR
CGGTGACTCAAGAGCAATCA+TGG 0.408942 2_4:-56840577 Msa0337060:CDS
CATCAAGTCATTGCTGTCCT+TGG 0.412532 2_4:+56840551 None:intergenic
CTATTAAATTAAATCAAATC+CGG 0.415351 2_4:+56842058 None:intergenic
CAAGGACAGCAATGACTTGA+TGG 0.418227 2_4:-56840550 Msa0337060:CDS
TGAATGCCTGTTGCTTTGGA+TGG 0.421566 2_4:+56839750 None:intergenic
ATCATCGGCAGCGAGGGTTC+TGG 0.421788 2_4:-56839911 Msa0337060:CDS
ATCCAAAGCAACAGGCATTC+AGG 0.423868 2_4:-56839748 Msa0337060:CDS
AGAAGCCGGTGCGTAAATTC+AGG 0.424088 2_4:+56840227 None:intergenic
CAAAACTGGTTAGGTCTAGA+AGG 0.426937 2_4:-56839571 Msa0337060:CDS
CATCAGCTGAAGATCAAAAC+TGG 0.432537 2_4:-56839585 Msa0337060:CDS
AGGATGAACCAGAAGTTTGT+AGG 0.433167 2_4:-56840340 Msa0337060:CDS
ACTAAATATTCTGTTTGGTA+AGG 0.434667 2_4:+56841415 None:intergenic
TTCATTGTTCTTGCCTCGGA+TGG 0.438125 2_4:-56840188 Msa0337060:CDS
TTGTAATGCTTAAAACAATA+CGG 0.440204 2_4:-56839456 Msa0337060:three_prime_UTR
ATGAGGTCAATGTGAATTCT+GGG 0.447942 2_4:-56842016 Msa0337060:five_prime_UTR
GTGAAGTTCCTTCGCAAAGA+TGG 0.450703 2_4:+56839688 None:intergenic
AATTCACACCTTGTTGCTGT+TGG 0.452894 2_4:+56841742 None:intergenic
GCTGAAGATCAAAACTGGTT+AGG 0.453850 2_4:-56839580 Msa0337060:CDS
CAGGGTTCAAATTTGTTCAT+GGG 0.454152 2_4:-56840606 Msa0337060:CDS
AAACTCTGAGATTCCAAGCT+TGG 0.454604 2_4:+56841659 None:intergenic
CCGCAACCATCCAAAGCAAC+AGG 0.458483 2_4:-56839756 Msa0337060:CDS
ATCCAATAAAGCTAGTTTCA+AGG 0.466709 2_4:-56841046 Msa0337060:CDS
TGTGTCTTCTTCTGTTCAGC+CGG 0.478288 2_4:-56841832 Msa0337060:five_prime_UTR
AGACTTCAGCTCTTTGTCCA+TGG 0.483435 2_4:+56840927 None:intergenic
CCAAACAGAATATTTAGTAA+TGG 0.485067 2_4:-56841410 Msa0337060:CDS
CAATAGAAGTAATGACGGTT+CGG 0.486094 2_4:-56841531 Msa0337060:CDS
ATATGAATGGATAAAGAAAC+CGG 0.487229 2_4:+56841813 None:intergenic
AACCAGAAGTTTGTAGGGTG+TGG 0.487786 2_4:-56840334 Msa0337060:CDS
ATTTACGCAGCAGGGTCGTA+AGG 0.489572 2_4:-56841366 Msa0337060:CDS
GGCCGTTCTTCAGAAAATCT+AGG 0.491219 2_4:+56839517 None:intergenic
CAAGGGTAGGGTATTTGCAT+TGG 0.493438 2_4:-56840363 Msa0337060:CDS
GGGTAGGGTATTTGCATTGG+AGG 0.495563 2_4:-56840360 Msa0337060:CDS
TCAGTTCATTGTTCTTGCCT+CGG 0.500431 2_4:-56840192 Msa0337060:CDS
TGCGGTGTGTTCGATGGCCA+TGG 0.500762 2_4:-56841162 Msa0337060:CDS
TGTGTAGGAGGAGGAAAAGG+AGG 0.506060 2_4:-56839637 Msa0337060:CDS
TCTAGCTTCATTCTTAATGT+CGG 0.507918 2_4:+56839353 None:intergenic
CCTAGTTGCACGCAAAGTTA+GGG 0.510651 2_4:-56841127 Msa0337060:CDS
TAATTTATCTGCTGAGGATG+AGG 0.511259 2_4:-56840992 Msa0337060:CDS
AGCTTTCATGAAGGCATACA+AGG 0.511427 2_4:-56840950 Msa0337060:CDS
TTTGCCGTAAGCTATATGAA+TGG 0.512854 2_4:+56841800 None:intergenic
CAAGAACAATGAACTGATCT+CGG 0.513831 2_4:+56840198 None:intergenic
TTCGATGGCCATGGTCCATA+TGG 0.516140 2_4:-56841153 Msa0337060:CDS
CGTGCAACTAGGTGACCATA+TGG 0.519449 2_4:+56841138 None:intergenic
CTCGCTGCCGATGATCGACT+TGG 0.523251 2_4:+56839919 None:intergenic
GCTGTACCAGTGAGTTTACT+CGG 0.525049 2_4:+56839542 None:intergenic
ATCTTCTGCGGTGTGTTCGA+TGG 0.528423 2_4:-56841168 Msa0337060:CDS
GCTCTAGCCATTGCTAATCC+AGG 0.531526 2_4:+56840293 None:intergenic
CCCTAACTTTGCGTGCAACT+AGG 0.533155 2_4:+56841127 None:intergenic
AAGGACATGAAGCTTGAAAG+TGG 0.537072 2_4:-56841027 Msa0337060:CDS
AATCCAGGTGCATCATCAAA+AGG 0.541135 2_4:+56840308 None:intergenic
TTAATACTTTCTATAGTGAG+AGG 0.541580 2_4:-56841714 Msa0337060:five_prime_UTR
AAGTCGATCATCGGCAGCGA+GGG 0.548909 2_4:-56839917 Msa0337060:CDS
GTTCCTTCGCAAAGATGGCT+CGG 0.550410 2_4:+56839693 None:intergenic
GATCTCGGTCTGTGAGAAGC+CGG 0.551873 2_4:+56840213 None:intergenic
ACTTACTTCCCATACAATCA+TGG 0.552828 2_4:+56841328 None:intergenic
TATAATGAGACATGTGTAGG+AGG 0.553514 2_4:-56839649 Msa0337060:CDS
TATTAAATTAAATCAAATCC+GGG 0.554787 2_4:+56842059 None:intergenic
ATCAGCACCAAGTCGATCAT+CGG 0.562467 2_4:-56839926 Msa0337060:CDS
CCTGTTGCTTTGGATGGTTG+CGG 0.563383 2_4:+56839756 None:intergenic
AAGAGCAATCATGGGATCCA+AGG 0.564131 2_4:-56840568 Msa0337060:CDS
GGATGAACCAGAAGTTTGTA+GGG 0.564180 2_4:-56840339 Msa0337060:CDS
GAAATTTCTTACACCATCCG+AGG 0.565735 2_4:+56840175 None:intergenic
ATCGGCAGCGAGGGTTCTGG+TGG 0.567760 2_4:-56839908 Msa0337060:CDS
AATCCAGTTGAGTCAGATGA+TGG 0.571512 2_4:-56839724 Msa0337060:CDS
TGGAATCTGCCGCACGAGAG+TGG 0.576177 2_4:-56839888 Msa0337060:CDS
AATGAGACATGTGTAGGAGG+AGG 0.580853 2_4:-56839646 Msa0337060:CDS
TGAGAATAATTTATCTGCTG+AGG 0.584211 2_4:-56840998 Msa0337060:CDS
TCTTGTATATTTACGCAGCA+GGG 0.584645 2_4:-56841374 Msa0337060:CDS
AATCCGATTTCAAGACAAGA+TGG 0.585814 2_4:+56841503 None:intergenic
ACATGTCTCATTATATTCTG+AGG 0.588314 2_4:+56839657 None:intergenic
AATTAGTTTACATTAAGCAA+AGG 0.589217 2_4:-56841895 Msa0337060:five_prime_UTR
TCAAGATGCCATGATTGTAT+GGG 0.591058 2_4:-56841336 Msa0337060:CDS
GTCAATGTGAATTCTGGGGA+AGG 0.595148 2_4:-56842011 Msa0337060:five_prime_UTR
TTTCTGGAACTGAGAAAATG+GGG 0.601120 2_4:-56841571 Msa0337060:exon
CTGTACCTGAATTTACGCAC+CGG 0.609120 2_4:-56840232 Msa0337060:CDS
TTTACGCAGCAGGGTCGTAA+GGG 0.610094 2_4:-56841365 Msa0337060:CDS
CATGAAGGCATACAAGGCCA+TGG 0.610791 2_4:-56840944 Msa0337060:CDS
AGTCCGAGCCATCTTTGCGA+AGG 0.615130 2_4:-56839696 Msa0337060:CDS
GAATATAATGAGACATGTGT+AGG 0.617364 2_4:-56839652 Msa0337060:CDS
GAGTCTGTCGATGTTGAAGA+CGG 0.621885 2_4:-56839613 Msa0337060:CDS
ACAAGCAATAGAAGTAATGA+CGG 0.628828 2_4:-56841536 Msa0337060:CDS
TAGTGGAAGCACATCTGTGA+CGG 0.631139 2_4:-56840881 Msa0337060:CDS
CTGTACCAGTGAGTTTACTC+GGG 0.631787 2_4:+56839543 None:intergenic
TATTTAGTAATGGAAAGAGT+CGG 0.646864 2_4:-56841400 Msa0337060:CDS
GTGGAGAGAAGCTTTCATGA+AGG 0.651868 2_4:-56840959 Msa0337060:CDS
GCTAGTTTCCAACAGCAACA+AGG 0.652102 2_4:-56841750 Msa0337060:five_prime_UTR
TCAGAAGATGCGATCTTCTG+CGG 0.654370 2_4:-56841180 Msa0337060:CDS
GGTGACTCAAGAGCAATCAT+GGG 0.657492 2_4:-56840576 Msa0337060:CDS
CAAGTCGATCATCGGCAGCG+AGG 0.659177 2_4:-56839918 Msa0337060:CDS
TGTCTTGAAATCGGATTGTG+TGG 0.666044 2_4:-56841497 Msa0337060:CDS
TGTCACCCGAGTAAACTCAC+TGG 0.671131 2_4:-56839548 Msa0337060:CDS
CATGAAGCTTGAAAGTGGAG+AGG 0.671148 2_4:-56841022 Msa0337060:CDS
ACATTGACCTCATCGAAATG+CGG 0.674333 2_4:+56842026 None:intergenic
AGGATGAGGTGAATTCTATG+TGG 0.681140 2_4:-56840978 Msa0337060:CDS
TGATGCACCTGGATTAGCAA+TGG 0.684010 2_4:-56840300 Msa0337060:CDS
TGAGGTCAATGTGAATTCTG+GGG 0.688531 2_4:-56842015 Msa0337060:five_prime_UTR
CTAGGTGACCATATGGACCA+TGG 0.689718 2_4:+56841145 None:intergenic
TTTAAGTTTCCACTCTCGTG+CGG 0.690625 2_4:+56839879 None:intergenic
TCAAACTCCGCATTTCGATG+AGG 0.703059 2_4:-56842033 Msa0337060:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATATTTAATATATA+TGG + chr2_4:56839784-56839803 None:intergenic 0.0%
!! AAAAAACATAAATTTAAACA+TGG + chr2_4:56841182-56841201 None:intergenic 10.0%
!! TCATAAATATTATTTATATG+AGG - chr2_4:56841548-56841567 Msa0337060:CDS 10.0%
!!! AAGAAGAATTATTTTTTATT+TGG - chr2_4:56842212-56842231 Msa0337060:five_prime_UTR 10.0%
!!! ATAAATGTTTTATTCTCATT+TGG - chr2_4:56839400-56839419 Msa0337060:three_prime_UTR 15.0%
!! TATTAAATTAAATCAAATCC+GGG + chr2_4:56839582-56839601 None:intergenic 15.0%
!! CTATTAAATTAAATCAAATC+CGG + chr2_4:56839583-56839602 None:intergenic 15.0%
!!! TTTTGATTTTTGTTTTCATT+AGG - chr2_4:56840427-56840446 Msa0337060:intron 15.0%
!!! TATATGTTTTCTTTTGTATA+AGG - chr2_4:56840971-56840990 Msa0337060:CDS 15.0%
!!! ATATGTTTTCTTTTGTATAA+GGG - chr2_4:56840972-56840991 Msa0337060:CDS 15.0%
!!! AATTAGTTTACATTAAGCAA+AGG - chr2_4:56839743-56839762 Msa0337060:CDS 20.0%
!! TGAAAACAAAAATCAAAACT+AGG + chr2_4:56840425-56840444 None:intergenic 20.0%
!!! AAAAACGAAAGCAATTTTAT+CGG + chr2_4:56840545-56840564 None:intergenic 20.0%
!! AAAGAAAACATATACAGAAA+AGG + chr2_4:56840965-56840984 None:intergenic 20.0%
!! TGATGCAATAATATTCTTAT+AGG - chr2_4:56841228-56841247 Msa0337060:intron 20.0%
!!! ATAAACAATTTTCAAGAGTT+TGG + chr2_4:56842145-56842164 None:intergenic 20.0%
!! TTGTAATGCTTAAAACAATA+CGG - chr2_4:56842182-56842201 Msa0337060:five_prime_UTR 20.0%
! TCTAGATGTTCATTTAATCT+TGG - chr2_4:56839486-56839505 Msa0337060:three_prime_UTR 25.0%
! CACACAAATTTAGATATTTG+TGG + chr2_4:56839515-56839534 None:intergenic 25.0%
! ATATGAATGGATAAAGAAAC+CGG + chr2_4:56839828-56839847 None:intergenic 25.0%
! TTATCCATTCATATAGCTTA+CGG - chr2_4:56839834-56839853 Msa0337060:CDS 25.0%
! TTAATACTTTCTATAGTGAG+AGG - chr2_4:56839924-56839943 Msa0337060:CDS 25.0%
!!! ATCTAAAGTGTTTTTCTTTC+TGG - chr2_4:56840051-56840070 Msa0337060:intron 25.0%
! ACTAAATATTCTGTTTGGTA+AGG + chr2_4:56840226-56840245 None:intergenic 25.0%
! CCATTACTAAATATTCTGTT+TGG + chr2_4:56840231-56840250 None:intergenic 25.0%
! CCAAACAGAATATTTAGTAA+TGG - chr2_4:56840228-56840247 Msa0337060:CDS 25.0%
!! TATTTAGTAATGGAAAGAGT+CGG - chr2_4:56840238-56840257 Msa0337060:CDS 25.0%
!! AGTAAGTATGTTTCATGTTT+TGG - chr2_4:56840326-56840345 Msa0337060:CDS 25.0%
!! GATAAAATTGCTTTCGTTTT+TGG - chr2_4:56840544-56840563 Msa0337060:CDS 25.0%
!!! AATTTGGATTGTTTTTGTAG+TGG - chr2_4:56840740-56840759 Msa0337060:intron 25.0%
!!! TCATTTTCTTCACTTTTTCA+GGG - chr2_4:56841014-56841033 Msa0337060:CDS 25.0%
!! TGAAAGAATTAAAAAGTGCA+AGG - chr2_4:56841257-56841276 Msa0337060:intron 25.0%
!! GAAAGAATTAAAAAGTGCAA+GGG - chr2_4:56841258-56841277 Msa0337060:intron 25.0%
! TAAATATCCAACTTCGAAAA+TGG - chr2_4:56841778-56841797 Msa0337060:five_prime_UTR 25.0%
! TTGAAAATTGTTTATTCAGC+TGG - chr2_4:56842150-56842169 Msa0337060:five_prime_UTR 25.0%
!!! AAACTAGCTCCTTTTTTACT+CGG + chr2_4:56839876-56839895 None:intergenic 30.0%
ACAAGCAATAGAAGTAATGA+CGG - chr2_4:56840102-56840121 Msa0337060:intron 30.0%
! ATCCAATAAAGCTAGTTTCA+AGG - chr2_4:56840592-56840611 Msa0337060:CDS 30.0%
TGAGAATAATTTATCTGCTG+AGG - chr2_4:56840640-56840659 Msa0337060:intron 30.0%
AAGATCAGCATCTATCATAT+TGG - chr2_4:56840799-56840818 Msa0337060:intron 30.0%
TCACGAGTAATCTTGTAATT+TGG - chr2_4:56840891-56840910 Msa0337060:CDS 30.0%
ATTACGGGGTTAAAATACTA+CGG + chr2_4:56840918-56840937 None:intergenic 30.0%
!!! CTCATTTTCTTCACTTTTTC+AGG - chr2_4:56841013-56841032 Msa0337060:CDS 30.0%
! AATTTGTTCATGGGCAATAT+CGG - chr2_4:56841041-56841060 Msa0337060:CDS 30.0%
ATGATTTCATATGACACACT+TGG + chr2_4:56841152-56841171 None:intergenic 30.0%
! AATTAAAAAGTGCAAGGGTA+GGG - chr2_4:56841263-56841282 Msa0337060:intron 30.0%
!!! TTGTGTGTCTATTTTTGGAT+GGG - chr2_4:56841813-56841832 Msa0337060:five_prime_UTR 30.0%
!!! TCTATTTTTGGATGGGAAAA+TGG - chr2_4:56841820-56841839 Msa0337060:five_prime_UTR 30.0%
ACATGTCTCATTATATTCTG+AGG + chr2_4:56841984-56842003 None:intergenic 30.0%
GAATATAATGAGACATGTGT+AGG - chr2_4:56841986-56842005 Msa0337060:five_prime_UTR 30.0%
!! TTCCTAGATTTTCTGAAGAA+CGG - chr2_4:56842119-56842138 Msa0337060:five_prime_UTR 30.0%
! TCTAGCTTCATTCTTAATGT+CGG + chr2_4:56842288-56842307 None:intergenic 30.0%
!!! AGTTTTAATTGCACAGTTCC+CGG - chr2_4:56839561-56839580 Msa0337060:CDS 35.0%
ATGAGGTCAATGTGAATTCT+GGG - chr2_4:56839622-56839641 Msa0337060:CDS 35.0%
TTTGCCGTAAGCTATATGAA+TGG + chr2_4:56839841-56839860 None:intergenic 35.0%
TTCTATAGTGAGAGGATCTT+TGG - chr2_4:56839932-56839951 Msa0337060:CDS 35.0%
!! TCTTTCTGGAACTGAGAAAA+TGG - chr2_4:56840065-56840084 Msa0337060:intron 35.0%
!! CTTTCTGGAACTGAGAAAAT+GGG - chr2_4:56840066-56840085 Msa0337060:intron 35.0%
!! TTTCTGGAACTGAGAAAATG+GGG - chr2_4:56840067-56840086 Msa0337060:intron 35.0%
CAATAGAAGTAATGACGGTT+CGG - chr2_4:56840107-56840126 Msa0337060:intron 35.0%
ACTCCATCTTGTCTTGAAAT+CGG - chr2_4:56840132-56840151 Msa0337060:intron 35.0%
AATCCGATTTCAAGACAAGA+TGG + chr2_4:56840138-56840157 None:intergenic 35.0%
TTCTTGTATATTTACGCAGC+AGG - chr2_4:56840263-56840282 Msa0337060:CDS 35.0%
TCTTGTATATTTACGCAGCA+GGG - chr2_4:56840264-56840283 Msa0337060:CDS 35.0%
ATCAAGATGCCATGATTGTA+TGG - chr2_4:56840301-56840320 Msa0337060:CDS 35.0%
TCAAGATGCCATGATTGTAT+GGG - chr2_4:56840302-56840321 Msa0337060:CDS 35.0%
ACTTACTTCCCATACAATCA+TGG + chr2_4:56840313-56840332 None:intergenic 35.0%
TCATTGAATGAAGACAGACT+TGG - chr2_4:56840371-56840390 Msa0337060:CDS 35.0%
!! GTCCTTGAAACTAGCTTTAT+TGG + chr2_4:56840597-56840616 None:intergenic 35.0%
TAATTTATCTGCTGAGGATG+AGG - chr2_4:56840646-56840665 Msa0337060:intron 35.0%
TAGTTTACTGATAAGTGAGC+AGG - chr2_4:56840860-56840879 Msa0337060:intron 35.0%
! TCAGGGTTCAAATTTGTTCA+TGG - chr2_4:56841031-56841050 Msa0337060:CDS 35.0%
! CAGGGTTCAAATTTGTTCAT+GGG - chr2_4:56841032-56841051 Msa0337060:CDS 35.0%
! GAATTAAAAAGTGCAAGGGT+AGG - chr2_4:56841262-56841281 Msa0337060:intron 35.0%
! ATTTGGCGATTTTTGCTTGA+AGG - chr2_4:56841368-56841387 Msa0337060:CDS 35.0%
! GATTTTTGCTTGAAGGAGTA+TGG - chr2_4:56841375-56841394 Msa0337060:CDS 35.0%
CAAGAACAATGAACTGATCT+CGG + chr2_4:56841443-56841462 None:intergenic 35.0%
CTCAAACCTTTGTCTTCTTT+CGG - chr2_4:56841636-56841655 Msa0337060:five_prime_UTR 35.0%
! TGCTGTTGTGTGTCTATTTT+TGG - chr2_4:56841808-56841827 Msa0337060:five_prime_UTR 35.0%
!!! GTTGTGTGTCTATTTTTGGA+TGG - chr2_4:56841812-56841831 Msa0337060:five_prime_UTR 35.0%
TATAATGAGACATGTGTAGG+AGG - chr2_4:56841989-56842008 Msa0337060:five_prime_UTR 35.0%
ACATTGACCTCATCGAAATG+CGG + chr2_4:56839615-56839634 None:intergenic 40.0%
GATGAGGTCAATGTGAATTC+TGG - chr2_4:56839621-56839640 Msa0337060:CDS 40.0%
TGAGGTCAATGTGAATTCTG+GGG - chr2_4:56839623-56839642 Msa0337060:CDS 40.0%
CGCATTTGACCGAGTAAAAA+AGG - chr2_4:56839864-56839883 Msa0337060:CDS 40.0%
AATTCACACCTTGTTGCTGT+TGG + chr2_4:56839899-56839918 None:intergenic 40.0%
TTTACTCAGTTGACCAAGCT+TGG - chr2_4:56839966-56839985 Msa0337060:CDS 40.0%
!! AAACTCTGAGATTCCAAGCT+TGG + chr2_4:56839982-56840001 None:intergenic 40.0%
TGTCTTGAAATCGGATTGTG+TGG - chr2_4:56840141-56840160 Msa0337060:intron 40.0%
TGAAGACAGACTTGGAATCT+TGG - chr2_4:56840379-56840398 Msa0337060:CDS 40.0%
! CGAAAGCAATTTTATCGGCA+AGG + chr2_4:56840540-56840559 None:intergenic 40.0%
AAGGACATGAAGCTTGAAAG+TGG - chr2_4:56840611-56840630 Msa0337060:intron 40.0%
AGGATGAGGTGAATTCTATG+TGG - chr2_4:56840660-56840679 Msa0337060:intron 40.0%
! AGCTTTCATGAAGGCATACA+AGG - chr2_4:56840688-56840707 Msa0337060:intron 40.0%
GCTGAAGTCTCATGCAAATT+TGG - chr2_4:56840724-56840743 Msa0337060:intron 40.0%
AACACACGCGATTTGATTAC+GGG + chr2_4:56840933-56840952 None:intergenic 40.0%
GAACACACGCGATTTGATTA+CGG + chr2_4:56840934-56840953 None:intergenic 40.0%
TATGACACACTTGGCAAATC+AGG + chr2_4:56841143-56841162 None:intergenic 40.0%
AGGATGAACCAGAAGTTTGT+AGG - chr2_4:56841298-56841317 Msa0337060:intron 40.0%
GGATGAACCAGAAGTTTGTA+GGG - chr2_4:56841299-56841318 Msa0337060:intron 40.0%
!!! TTACCTTTTGATGATGCACC+TGG - chr2_4:56841327-56841346 Msa0337060:intron 40.0%
AATCCAGGTGCATCATCAAA+AGG + chr2_4:56841333-56841352 None:intergenic 40.0%
! TTAGCAATGGCTAGAGCATT+TGG - chr2_4:56841351-56841370 Msa0337060:CDS 40.0%
TCAGTTCATTGTTCTTGCCT+CGG - chr2_4:56841446-56841465 Msa0337060:CDS 40.0%
GAAATTTCTTACACCATCCG+AGG + chr2_4:56841466-56841485 None:intergenic 40.0%
!! GGATGTTTTGAGCAATGAAG+AGG - chr2_4:56841673-56841692 Msa0337060:five_prime_UTR 40.0%
!! TGTTTTGAGCAATGAAGAGG+TGG - chr2_4:56841676-56841695 Msa0337060:five_prime_UTR 40.0%
! TTTAAGTTTCCACTCTCGTG+CGG + chr2_4:56841762-56841781 None:intergenic 40.0%
! CAGTCATCCATTTTCGAAGT+TGG + chr2_4:56841788-56841807 None:intergenic 40.0%
AATCCAGTTGAGTCAGATGA+TGG - chr2_4:56841914-56841933 Msa0337060:five_prime_UTR 40.0%
CATCAGCTGAAGATCAAAAC+TGG - chr2_4:56842053-56842072 Msa0337060:five_prime_UTR 40.0%
GCTGAAGATCAAAACTGGTT+AGG - chr2_4:56842058-56842077 Msa0337060:five_prime_UTR 40.0%
CAAAACTGGTTAGGTCTAGA+AGG - chr2_4:56842067-56842086 Msa0337060:five_prime_UTR 40.0%
TCAAACTCCGCATTTCGATG+AGG - chr2_4:56839605-56839624 Msa0337060:CDS 45.0%
! GTCAATGTGAATTCTGGGGA+AGG - chr2_4:56839627-56839646 Msa0337060:CDS 45.0%
TGTGTCTTCTTCTGTTCAGC+CGG - chr2_4:56839806-56839825 Msa0337060:CDS 45.0%
! GCTAGTTTCCAACAGCAACA+AGG - chr2_4:56839888-56839907 Msa0337060:CDS 45.0%
!! GTGAGAGGATCTTTGGAATC+AGG - chr2_4:56839939-56839958 Msa0337060:CDS 45.0%
TCAGAAGATGCGATCTTCTG+CGG - chr2_4:56840458-56840477 Msa0337060:intron 45.0%
ACCTAGTTGCACGCAAAGTT+AGG - chr2_4:56840510-56840529 Msa0337060:CDS 45.0%
CCTAGTTGCACGCAAAGTTA+GGG - chr2_4:56840511-56840530 Msa0337060:CDS 45.0%
CATGAAGCTTGAAAGTGGAG+AGG - chr2_4:56840616-56840635 Msa0337060:intron 45.0%
GTGGAGAGAAGCTTTCATGA+AGG - chr2_4:56840679-56840698 Msa0337060:intron 45.0%
AGACTTCAGCTCTTTGTCCA+TGG + chr2_4:56840714-56840733 None:intergenic 45.0%
! TAGTGGAAGCACATCTGTGA+CGG - chr2_4:56840757-56840776 Msa0337060:intron 45.0%
ATCTGTGACGGTAGTGAAAC+AGG - chr2_4:56840769-56840788 Msa0337060:intron 45.0%
ACACACGCGATTTGATTACG+GGG + chr2_4:56840932-56840951 None:intergenic 45.0%
GGTGACTCAAGAGCAATCAT+GGG - chr2_4:56841062-56841081 Msa0337060:CDS 45.0%
AAGAGCAATCATGGGATCCA+AGG - chr2_4:56841070-56841089 Msa0337060:CDS 45.0%
CATCAAGTCATTGCTGTCCT+TGG + chr2_4:56841090-56841109 None:intergenic 45.0%
CAAGGACAGCAATGACTTGA+TGG - chr2_4:56841088-56841107 Msa0337060:CDS 45.0%
! CAAGGGTAGGGTATTTGCAT+TGG - chr2_4:56841275-56841294 Msa0337060:intron 45.0%
AACCAGAAGTTTGTAGGGTG+TGG - chr2_4:56841304-56841323 Msa0337060:intron 45.0%
AACCACACCCTACAAACTTC+TGG + chr2_4:56841309-56841328 None:intergenic 45.0%
!! TGATGCACCTGGATTAGCAA+TGG - chr2_4:56841338-56841357 Msa0337060:CDS 45.0%
CTGTACCTGAATTTACGCAC+CGG - chr2_4:56841406-56841425 Msa0337060:CDS 45.0%
TTCATTGTTCTTGCCTCGGA+TGG - chr2_4:56841450-56841469 Msa0337060:CDS 45.0%
CAGAGACCGAAAGAAGACAA+AGG + chr2_4:56841645-56841664 None:intergenic 45.0%
TCTTTCGGTCTCTGCAGATA+TGG - chr2_4:56841651-56841670 Msa0337060:five_prime_UTR 45.0%
CTTTCGGTCTCTGCAGATAT+GGG - chr2_4:56841652-56841671 Msa0337060:five_prime_UTR 45.0%
ATCAGCACCAAGTCGATCAT+CGG - chr2_4:56841712-56841731 Msa0337060:five_prime_UTR 45.0%
!! TGAATGCCTGTTGCTTTGGA+TGG + chr2_4:56841891-56841910 None:intergenic 45.0%
ATCCAAAGCAACAGGCATTC+AGG - chr2_4:56841890-56841909 Msa0337060:five_prime_UTR 45.0%
TGACCATCATCTGACTCAAC+TGG + chr2_4:56841920-56841939 None:intergenic 45.0%
GTGAAGTTCCTTCGCAAAGA+TGG + chr2_4:56841953-56841972 None:intergenic 45.0%
AATGAGACATGTGTAGGAGG+AGG - chr2_4:56841992-56842011 Msa0337060:five_prime_UTR 45.0%
ACATGTGTAGGAGGAGGAAA+AGG - chr2_4:56841998-56842017 Msa0337060:five_prime_UTR 45.0%
GAGTCTGTCGATGTTGAAGA+CGG - chr2_4:56842025-56842044 Msa0337060:five_prime_UTR 45.0%
CTGTACCAGTGAGTTTACTC+GGG + chr2_4:56842098-56842117 None:intergenic 45.0%
GCTGTACCAGTGAGTTTACT+CGG + chr2_4:56842099-56842118 None:intergenic 45.0%
GGCCGTTCTTCAGAAAATCT+AGG + chr2_4:56842124-56842143 None:intergenic 45.0%
ATTTACGCAGCAGGGTCGTA+AGG - chr2_4:56840272-56840291 Msa0337060:CDS 50.0%
TTTACGCAGCAGGGTCGTAA+GGG - chr2_4:56840273-56840292 Msa0337060:CDS 50.0%
ATCTTCTGCGGTGTGTTCGA+TGG - chr2_4:56840470-56840489 Msa0337060:intron 50.0%
TTCGATGGCCATGGTCCATA+TGG - chr2_4:56840485-56840504 Msa0337060:intron 50.0%
CTAGGTGACCATATGGACCA+TGG + chr2_4:56840496-56840515 None:intergenic 50.0%
CGTGCAACTAGGTGACCATA+TGG + chr2_4:56840503-56840522 None:intergenic 50.0%
CCCTAACTTTGCGTGCAACT+AGG + chr2_4:56840514-56840533 None:intergenic 50.0%
! CATGAAGGCATACAAGGCCA+TGG - chr2_4:56840694-56840713 Msa0337060:intron 50.0%
CGGTGACTCAAGAGCAATCA+TGG - chr2_4:56841061-56841080 Msa0337060:CDS 50.0%
! GGGTAGGGTATTTGCATTGG+AGG - chr2_4:56841278-56841297 Msa0337060:intron 50.0%
GCTCTAGCCATTGCTAATCC+AGG + chr2_4:56841348-56841367 None:intergenic 50.0%
AGAAGCCGGTGCGTAAATTC+AGG + chr2_4:56841414-56841433 None:intergenic 50.0%
!! CCTGTTGCTTTGGATGGTTG+CGG + chr2_4:56841885-56841904 None:intergenic 50.0%
! TGCCTGAATGCCTGTTGCTT+TGG + chr2_4:56841895-56841914 None:intergenic 50.0%
GTTCCTTCGCAAAGATGGCT+CGG + chr2_4:56841948-56841967 None:intergenic 50.0%
TGTGTAGGAGGAGGAAAAGG+AGG - chr2_4:56842001-56842020 Msa0337060:five_prime_UTR 50.0%
TGTCACCCGAGTAAACTCAC+TGG - chr2_4:56842090-56842109 Msa0337060:five_prime_UTR 50.0%
GATCTCGGTCTGTGAGAAGC+CGG + chr2_4:56841428-56841447 None:intergenic 55.0%
AAGTCGATCATCGGCAGCGA+GGG - chr2_4:56841721-56841740 Msa0337060:five_prime_UTR 55.0%
CCGCAACCATCCAAAGCAAC+AGG - chr2_4:56841882-56841901 Msa0337060:five_prime_UTR 55.0%
AGTCCGAGCCATCTTTGCGA+AGG - chr2_4:56841942-56841961 Msa0337060:five_prime_UTR 55.0%
TGCGGTGTGTTCGATGGCCA+TGG - chr2_4:56840476-56840495 Msa0337060:intron 60.0%
CTCGCTGCCGATGATCGACT+TGG + chr2_4:56841722-56841741 None:intergenic 60.0%
CAAGTCGATCATCGGCAGCG+AGG - chr2_4:56841720-56841739 Msa0337060:five_prime_UTR 60.0%
ATCATCGGCAGCGAGGGTTC+TGG - chr2_4:56841727-56841746 Msa0337060:five_prime_UTR 60.0%
TGGAATCTGCCGCACGAGAG+TGG - chr2_4:56841750-56841769 Msa0337060:five_prime_UTR 60.0%
! ATCGGCAGCGAGGGTTCTGG+TGG - chr2_4:56841730-56841749 Msa0337060:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 56839349 56842311 56839349 ID=Msa0337060;Name=Msa0337060
chr2_4 mRNA 56839349 56842311 56839349 ID=Msa0337060-mRNA-1;Parent=Msa0337060;Name=Msa0337060-mRNA-1;_AED=0.15;_eAED=0.15;_QI=695|0.8|0.83|1|0.8|0.66|6|158|479
chr2_4 exon 56839349 56839992 56839349 ID=Msa0337060-mRNA-1:exon:17308;Parent=Msa0337060-mRNA-1
chr2_4 exon 56840160 56840410 56840160 ID=Msa0337060-mRNA-1:exon:17307;Parent=Msa0337060-mRNA-1
chr2_4 exon 56840508 56840625 56840508 ID=Msa0337060-mRNA-1:exon:17306;Parent=Msa0337060-mRNA-1
chr2_4 exon 56840870 56841211 56840870 ID=Msa0337060-mRNA-1:exon:17305;Parent=Msa0337060-mRNA-1
chr2_4 exon 56841334 56842258 56841334 ID=Msa0337060-mRNA-1:exon:17304;Parent=Msa0337060-mRNA-1
chr2_4 exon 56842299 56842311 56842299 ID=Msa0337060-mRNA-1:exon:17303;Parent=Msa0337060-mRNA-1
chr2_4 five_prime_UTR 56842299 56842311 56842299 ID=Msa0337060-mRNA-1:five_prime_utr;Parent=Msa0337060-mRNA-1
chr2_4 five_prime_UTR 56841577 56842258 56841577 ID=Msa0337060-mRNA-1:five_prime_utr;Parent=Msa0337060-mRNA-1
chr2_4 CDS 56841334 56841576 56841334 ID=Msa0337060-mRNA-1:cds;Parent=Msa0337060-mRNA-1
chr2_4 CDS 56840870 56841211 56840870 ID=Msa0337060-mRNA-1:cds;Parent=Msa0337060-mRNA-1
chr2_4 CDS 56840508 56840625 56840508 ID=Msa0337060-mRNA-1:cds;Parent=Msa0337060-mRNA-1
chr2_4 CDS 56840160 56840410 56840160 ID=Msa0337060-mRNA-1:cds;Parent=Msa0337060-mRNA-1
chr2_4 CDS 56839507 56839992 56839507 ID=Msa0337060-mRNA-1:cds;Parent=Msa0337060-mRNA-1
chr2_4 three_prime_UTR 56839349 56839506 56839349 ID=Msa0337060-mRNA-1:three_prime_utr;Parent=Msa0337060-mRNA-1
Gene Sequence

>Msa0337060

ATGGGGTGTTGTGTCTCAACAAGCAATAGAAGTAATGACGGTTCGGTTACTCCATCTTGTCTTGAAATCGGATTGTGTGGTCAAAAGAAAGCAAGAAGAACATTCTCTGATCATGTTGTCTCTCTGAACAAGTTAGCATCCTTACCAAACAGAATATTTAGTAATGGAAAGAGTCGGTCTTCTTGTATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAAGATGCCATGATTGTATGGGAAGATTTTGTGTCAGAAGATGCGATCTTCTGCGGTGTGTTCGATGGCCATGGTCCATATGGTCACCTAGTTGCACGCAAAGTTAGGGATGCCTTGCCGATAAAATTGCTTTCGTTTTTGGATTCATCTGAGTCGAAGCGAAATGAATCCAATAAAGCTAGTTTCAAGGACATGAAGCTTGAAAGTGGAGAGGCTGAGAATAATTTATCTGCTGAGGATGAGGTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCCATGGACAAAGAGCTGAAGTCTCATGCAAATTTGGATTGTTTTTGTAGTGGAAGCACATCTGTGACGGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATCGGTGACTCAAGAGCAATCATGGGATCCAAGGACAGCAATGACTTGATGGTTGCAATTCAGCTGACAGTTGATTTAAAACCTGATTTGCCAAGAGAAGCTGAAAGAATTAAAAAGTGCAAGGGTAGGGTATTTGCATTGGAGGATGAACCAGAAGTTTGTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTGTACCTGAATTTACGCACCGGCTTCTCACAGACCGAGATCAGTTCATTGTTCTTGCCTCGGATGGTGTAAGAAATTTCAATTTCATATCTACTATATGGGATGTTTTGAGCAATGAAGAGGTGGTAGAAATAGTATCATCAGCACCAAGTCGATCATCGGCAGCGAGGGTTCTGGTGGAATCTGCCGCACGAGAGTGGAAACTTAAATATCCAACTTCGAAAATGGATGACTGTGCTGTTGTGTGTCTATTTTTGGATGGGAAAATGGACTCAGAAGAATCTGATTGTGATGAACAATGCTATTCTTCCGCAACCATCCAAAGCAACAGGCATTCAGGCAATCCAGTTGAGTCAGATGATGGTCAAAAGTCCGAGCCATCTTTGCGAAGGAACTTCACTGTGAGAACCTCAGAATATAATGAGACATGTGTAGGAGGAGGAAAAGGAGGAGAGTCTGTCGATGTTGAAGACGGAACATCATCAGCTGAAGATCAAAACTGGTTAGGTCTAGAAGGTGTCACCCGAGTAAACTCACTGGTACAGCTTCCTAGATTTTCTGAAGAACGGCCAAACTCTTGA

Protein sequence

>Msa0337060

MGCCVSTSNRSNDGSVTPSCLEIGLCGQKKARRTFSDHVVSLNKLASLPNRIFSNGKSRSSCIFTQQGRKGVNQDAMIVWEDFVSEDAIFCGVFDGHGPYGHLVARKVRDALPIKLLSFLDSSESKRNESNKASFKDMKLESGEAENNLSAEDEVNSMWREAFMKAYKAMDKELKSHANLDCFCSGSTSVTVVKQGSNLFMGNIGDSRAIMGSKDSNDLMVAIQLTVDLKPDLPREAERIKKCKGRVFALEDEPEVCRVWLPFDDAPGLAMARAFGDFCLKEYGVISVPEFTHRLLTDRDQFIVLASDGVRNFNFISTIWDVLSNEEVVEIVSSAPSRSSAARVLVESAAREWKLKYPTSKMDDCAVVCLFLDGKMDSEESDCDEQCYSSATIQSNRHSGNPVESDDGQKSEPSLRRNFTVRTSEYNETCVGGGKGGESVDVEDGTSSAEDQNWLGLEGVTRVNSLVQLPRFSEERPNS*