Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383190 | XP_003603966.1 | 97.978 | 544 | 11 | 0 | 1 | 544 | 19 | 562 | 0.0 | 1108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383190 | sp|Q93ZE9|SFH3_ARATH | 63.722 | 532 | 165 | 6 | 4 | 529 | 20 | 529 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383190 | G7J768 | 97.978 | 544 | 11 | 0 | 1 | 544 | 19 | 562 | 0.0 | 1108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1383190 | 0.841399 | 4.866751e-58 | -8.615850e-47 |
| Msa0052780 | Msa1383190 | 0.818314 | 2.090790e-52 | -8.615850e-47 |
| Msa0076640 | Msa1383190 | 0.809421 | 1.908460e-50 | -8.615850e-47 |
| Msa0081700 | Msa1383190 | -0.800259 | 1.567499e-48 | -8.615850e-47 |
| Msa0092220 | Msa1383190 | 0.843744 | 1.160584e-58 | -8.615850e-47 |
| Msa0097570 | Msa1383190 | 0.814050 | 1.877086e-51 | -8.615850e-47 |
| Msa1361040 | Msa1383190 | 0.943170 | 1.948773e-102 | -8.615850e-47 |
| Msa1366480 | Msa1383190 | 0.800812 | 1.209061e-48 | -8.615850e-47 |
| Msa1368400 | Msa1383190 | 0.926454 | 4.584059e-91 | -8.615850e-47 |
| Msa1383190 | Msa1401110 | 0.815264 | 1.010723e-51 | -8.615850e-47 |
| Msa1383190 | Msa1413150 | 0.806002 | 1.016338e-49 | -8.615850e-47 |
| Msa1383190 | Msa1429470 | 0.803718 | 3.050337e-49 | -8.615850e-47 |
| Msa1383190 | Msa1459920 | 0.817865 | 2.642232e-52 | -8.615850e-47 |
| Msa1383190 | Msa1464140 | 0.800696 | 1.276918e-48 | -8.615850e-47 |
| Msa0619300 | Msa1383190 | 0.805615 | 1.225639e-49 | -8.615850e-47 |
| Msa0657340 | Msa1383190 | 0.812391 | 4.340894e-51 | -8.615850e-47 |
| Msa0672090 | Msa1383190 | 0.813377 | 2.639872e-51 | -8.615850e-47 |
| Msa0682110 | Msa1383190 | 0.810629 | 1.048057e-50 | -8.615850e-47 |
| Msa0682160 | Msa1383190 | 0.826888 | 2.119026e-54 | -8.615850e-47 |
| Msa0704690 | Msa1383190 | 0.805242 | 1.466926e-49 | -8.615850e-47 |
| Msa0715040 | Msa1383190 | 0.802004 | 6.891901e-49 | -8.615850e-47 |
| Msa0120860 | Msa1383190 | 0.809258 | 2.068537e-50 | -8.615850e-47 |
| Msa0127910 | Msa1383190 | -0.822298 | 2.553349e-53 | -8.615850e-47 |
| Msa0145430 | Msa1383190 | 0.828276 | 9.835655e-55 | -8.615850e-47 |
| Msa0164560 | Msa1383190 | 0.805743 | 1.151730e-49 | -8.615850e-47 |
| Msa0174060 | Msa1383190 | -0.804089 | 2.553894e-49 | -8.615850e-47 |
| Msa0177320 | Msa1383190 | 0.835852 | 1.317937e-56 | -8.615850e-47 |
| Msa0216150 | Msa1383190 | -0.807912 | 4.008705e-50 | -8.615850e-47 |
| Msa0224210 | Msa1383190 | 0.810556 | 1.087118e-50 | -8.615850e-47 |
| Msa0238140 | Msa1383190 | 0.831081 | 2.043546e-55 | -8.615850e-47 |
| Msa1254910 | Msa1383190 | 0.801286 | 9.673663e-49 | -8.615850e-47 |
| Msa1299200 | Msa1383190 | 0.831145 | 1.970657e-55 | -8.615850e-47 |
| Msa1304790 | Msa1383190 | 0.807380 | 5.200752e-50 | -8.615850e-47 |
| Msa1317740 | Msa1383190 | 0.812507 | 4.095185e-51 | -8.615850e-47 |
| Msa1326180 | Msa1383190 | 0.807504 | 4.893884e-50 | -8.615850e-47 |
| Msa1340440 | Msa1383190 | 0.806811 | 6.861091e-50 | -8.615850e-47 |
| Msa0369990 | Msa1383190 | 0.806209 | 9.191355e-50 | -8.615850e-47 |
| Msa0386890 | Msa1383190 | 0.926959 | 2.285524e-91 | -8.615850e-47 |
| Msa0390590 | Msa1383190 | -0.823759 | 1.165169e-53 | -8.615850e-47 |
| Msa0390790 | Msa1383190 | 0.814511 | 1.484355e-51 | -8.615850e-47 |
| Msa0403740 | Msa1383190 | -0.802552 | 5.315240e-49 | -8.615850e-47 |
| Msa0405200 | Msa1383190 | 0.801060 | 1.076111e-48 | -8.615850e-47 |
| Msa0429600 | Msa1383190 | 0.807861 | 4.109725e-50 | -8.615850e-47 |
| Msa0458220 | Msa1383190 | 0.809019 | 2.326340e-50 | -8.615850e-47 |
| Msa1041250 | Msa1383190 | 0.808611 | 2.845095e-50 | -8.615850e-47 |
| Msa0242720 | Msa1383190 | 0.820924 | 5.304221e-53 | -8.615850e-47 |
| Msa0265480 | Msa1383190 | 0.800664 | 1.295878e-48 | -8.615850e-47 |
| Msa0285420 | Msa1383190 | 0.804562 | 2.035433e-49 | -8.615850e-47 |
| Msa0294200 | Msa1383190 | 0.835203 | 1.923975e-56 | -8.615850e-47 |
| Msa0299340 | Msa1383190 | 0.823029 | 1.725734e-53 | -8.615850e-47 |
| Msa0303900 | Msa1383190 | 0.817461 | 3.259120e-52 | -8.615850e-47 |
| Msa0307430 | Msa1383190 | 0.804833 | 1.786423e-49 | -8.615850e-47 |
| Msa0324220 | Msa1383190 | 0.801416 | 9.096986e-49 | -8.615850e-47 |
| Msa0333770 | Msa1383190 | 0.824616 | 7.327729e-54 | -8.615850e-47 |
| Msa0340270 | Msa1383190 | 0.804771 | 1.841175e-49 | -8.615850e-47 |
| Msa0340370 | Msa1383190 | 0.813284 | 2.767239e-51 | -8.615850e-47 |
| Msa0364030 | Msa1383190 | -0.800695 | 1.277224e-48 | -8.615850e-47 |
| Msa1110900 | Msa1383190 | 0.800045 | 1.732308e-48 | -8.615850e-47 |
| Msa1131120 | Msa1383190 | 0.805731 | 1.158733e-49 | -8.615850e-47 |
| Msa1157200 | Msa1383190 | 0.823004 | 1.749016e-53 | -8.615850e-47 |
| Msa1173150 | Msa1383190 | 0.816352 | 5.781236e-52 | -8.615850e-47 |
| Msa1174280 | Msa1383190 | 0.806278 | 8.890462e-50 | -8.615850e-47 |
| Msa1177650 | Msa1383190 | 0.808475 | 3.041584e-50 | -8.615850e-47 |
| Msa1202470 | Msa1383190 | 0.807380 | 5.200752e-50 | -8.615850e-47 |
| Msa0531050 | Msa1383190 | 0.817847 | 2.666352e-52 | -8.615850e-47 |
| Msa0563440 | Msa1383190 | 0.808153 | 3.561381e-50 | -8.615850e-47 |
| Msa0565180 | Msa1383190 | 0.811641 | 6.325829e-51 | -8.615850e-47 |
| Msa0873880 | Msa1383190 | 0.807957 | 3.921862e-50 | -8.615850e-47 |
| Msa0873940 | Msa1383190 | 0.807906 | 4.021322e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383190 | MtrunA17_Chr3g0144891 | 97.978 | 544 | 11 | 0 | 1 | 544 | 19 | 562 | 0.0 | 1108 |
| Msa1383190 | MtrunA17_Chr4g0035361 | 71.983 | 464 | 118 | 7 | 79 | 536 | 1 | 458 | 0.0 | 653 |
| Msa1383190 | MtrunA17_Chr8g0372651 | 58.106 | 549 | 191 | 10 | 7 | 536 | 13 | 541 | 0.0 | 602 |
| Msa1383190 | MtrunA17_Chr4g0035391 | 53.608 | 582 | 196 | 12 | 23 | 545 | 48 | 614 | 0.0 | 563 |
| Msa1383190 | MtrunA17_Chr1g0155521 | 51.520 | 592 | 230 | 12 | 1 | 543 | 30 | 613 | 0.0 | 558 |
| Msa1383190 | MtrunA17_Chr3g0144911 | 63.391 | 407 | 139 | 5 | 1 | 398 | 29 | 434 | 0.0 | 530 |
| Msa1383190 | MtrunA17_Chr5g0404711 | 72.810 | 331 | 89 | 1 | 13 | 342 | 10 | 340 | 0.0 | 525 |
| Msa1383190 | MtrunA17_Chr5g0404711 | 49.398 | 83 | 41 | 1 | 463 | 544 | 388 | 470 | 7.64e-17 | 83.2 |
| Msa1383190 | MtrunA17_Chr3g0141821 | 49.135 | 578 | 235 | 10 | 2 | 543 | 13 | 567 | 3.97e-175 | 506 |
| Msa1383190 | MtrunA17_Chr7g0236461 | 60.067 | 298 | 117 | 1 | 20 | 315 | 39 | 336 | 1.86e-135 | 405 |
| Msa1383190 | MtrunA17_Chr3g0080051 | 39.667 | 600 | 296 | 14 | 1 | 543 | 20 | 610 | 4.24e-130 | 392 |
| Msa1383190 | MtrunA17_Chr4g0035381 | 59.044 | 293 | 111 | 2 | 51 | 336 | 49 | 339 | 4.77e-126 | 374 |
| Msa1383190 | MtrunA17_Chr8g0369291 | 38.272 | 567 | 303 | 11 | 19 | 543 | 33 | 594 | 5.50e-117 | 358 |
| Msa1383190 | MtrunA17_Chr5g0399151 | 51.815 | 303 | 144 | 1 | 16 | 318 | 54 | 354 | 5.74e-111 | 338 |
| Msa1383190 | MtrunA17_Chr3g0131581 | 31.349 | 252 | 152 | 9 | 44 | 294 | 36 | 267 | 7.31e-21 | 92.8 |
| Msa1383190 | MtrunA17_Chr4g0076441 | 30.622 | 209 | 137 | 3 | 80 | 286 | 34 | 236 | 3.36e-20 | 92.0 |
| Msa1383190 | MtrunA17_Chr2g0290661 | 30.516 | 213 | 132 | 4 | 80 | 286 | 39 | 241 | 5.58e-20 | 91.3 |
| Msa1383190 | MtrunA17_Chr3g0144901 | 34.536 | 194 | 97 | 7 | 371 | 543 | 4 | 188 | 1.80e-19 | 86.7 |
| Msa1383190 | MtrunA17_Chr3g0102691 | 30.144 | 209 | 139 | 3 | 79 | 286 | 33 | 235 | 3.37e-19 | 89.4 |
| Msa1383190 | MtrunA17_Chr8g0385691 | 33.790 | 219 | 126 | 5 | 72 | 289 | 42 | 242 | 3.40e-19 | 87.4 |
| Msa1383190 | MtrunA17_Chr8g0385681 | 32.420 | 219 | 129 | 7 | 72 | 289 | 45 | 245 | 4.27e-18 | 84.3 |
| Msa1383190 | MtrunA17_Chr4g0004981 | 29.204 | 226 | 137 | 8 | 79 | 295 | 125 | 336 | 3.19e-17 | 84.3 |
| Msa1383190 | MtrunA17_Chr8g0385291 | 27.064 | 218 | 140 | 6 | 79 | 289 | 181 | 386 | 9.17e-15 | 77.0 |
| Msa1383190 | MtrunA17_Chr1g0161441 | 29.224 | 219 | 135 | 9 | 74 | 289 | 27 | 228 | 4.23e-13 | 69.3 |
| Msa1383190 | MtrunA17_Chr3g0131071 | 29.333 | 225 | 128 | 11 | 79 | 289 | 249 | 456 | 1.10e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383190 | AT2G21540.6 | 63.722 | 532 | 165 | 6 | 4 | 529 | 20 | 529 | 0.0 | 694 |
| Msa1383190 | AT2G21540.2 | 63.722 | 532 | 165 | 6 | 4 | 529 | 20 | 529 | 0.0 | 694 |
| Msa1383190 | AT2G21540.1 | 63.722 | 532 | 165 | 6 | 4 | 529 | 20 | 529 | 0.0 | 694 |
| Msa1383190 | AT2G21540.4 | 63.722 | 532 | 165 | 6 | 4 | 529 | 20 | 529 | 0.0 | 694 |
| Msa1383190 | AT2G21540.3 | 63.636 | 528 | 166 | 4 | 4 | 529 | 20 | 523 | 0.0 | 692 |
| Msa1383190 | AT2G21540.5 | 63.636 | 528 | 166 | 4 | 4 | 529 | 20 | 523 | 0.0 | 692 |
| Msa1383190 | AT4G36490.1 | 61.835 | 545 | 173 | 13 | 7 | 537 | 8 | 531 | 0.0 | 649 |
| Msa1383190 | AT4G39180.3 | 59.116 | 543 | 198 | 8 | 1 | 537 | 17 | 541 | 0.0 | 649 |
| Msa1383190 | AT4G39180.2 | 59.116 | 543 | 198 | 8 | 1 | 537 | 17 | 541 | 0.0 | 649 |
| Msa1383190 | AT4G39180.1 | 58.932 | 543 | 200 | 8 | 1 | 537 | 17 | 542 | 0.0 | 647 |
| Msa1383190 | AT4G34580.2 | 60.545 | 550 | 189 | 12 | 1 | 537 | 8 | 542 | 0.0 | 644 |
| Msa1383190 | AT4G34580.1 | 60.545 | 550 | 189 | 12 | 1 | 537 | 8 | 542 | 0.0 | 644 |
| Msa1383190 | AT2G18180.1 | 59.890 | 546 | 181 | 12 | 8 | 538 | 13 | 535 | 0.0 | 633 |
| Msa1383190 | AT2G18180.2 | 59.890 | 546 | 181 | 12 | 8 | 538 | 13 | 535 | 0.0 | 632 |
| Msa1383190 | AT4G39170.1 | 53.807 | 591 | 219 | 12 | 1 | 545 | 29 | 611 | 0.0 | 592 |
| Msa1383190 | AT4G39170.2 | 53.729 | 590 | 219 | 13 | 1 | 545 | 29 | 609 | 0.0 | 587 |
| Msa1383190 | AT2G16380.2 | 54.189 | 561 | 216 | 10 | 1 | 545 | 8 | 543 | 0.0 | 581 |
| Msa1383190 | AT2G16380.1 | 54.189 | 561 | 216 | 10 | 1 | 545 | 8 | 543 | 0.0 | 581 |
| Msa1383190 | AT2G21520.1 | 52.122 | 589 | 233 | 13 | 1 | 541 | 29 | 616 | 0.0 | 580 |
| Msa1383190 | AT2G21520.2 | 52.122 | 589 | 233 | 13 | 1 | 541 | 33 | 620 | 0.0 | 580 |
| Msa1383190 | AT2G21520.3 | 52.122 | 589 | 233 | 13 | 1 | 541 | 33 | 620 | 0.0 | 580 |
| Msa1383190 | AT2G18180.4 | 60.417 | 480 | 157 | 9 | 80 | 545 | 11 | 471 | 0.0 | 564 |
| Msa1383190 | AT2G18180.3 | 60.417 | 480 | 157 | 9 | 80 | 545 | 11 | 471 | 0.0 | 563 |
| Msa1383190 | AT2G18180.5 | 60.259 | 463 | 151 | 9 | 97 | 545 | 1 | 444 | 0.0 | 538 |
| Msa1383190 | AT1G19650.1 | 48.370 | 583 | 253 | 11 | 1 | 543 | 26 | 600 | 1.95e-174 | 506 |
| Msa1383190 | AT2G16380.3 | 54.212 | 463 | 173 | 8 | 97 | 545 | 1 | 438 | 8.02e-166 | 478 |
| Msa1383190 | AT1G75370.1 | 50.168 | 594 | 235 | 15 | 1 | 545 | 29 | 610 | 1.35e-165 | 484 |
| Msa1383190 | AT1G75370.2 | 49.915 | 587 | 238 | 14 | 1 | 543 | 29 | 603 | 7.86e-165 | 484 |
| Msa1383190 | AT1G19650.3 | 68.438 | 320 | 99 | 2 | 1 | 319 | 26 | 344 | 9.61e-160 | 462 |
| Msa1383190 | AT3G24840.1 | 45.931 | 553 | 253 | 11 | 1 | 532 | 22 | 549 | 5.53e-158 | 463 |
| Msa1383190 | AT3G24840.6 | 45.931 | 553 | 253 | 11 | 1 | 532 | 22 | 549 | 5.53e-158 | 463 |
| Msa1383190 | AT3G24840.4 | 45.931 | 553 | 253 | 11 | 1 | 532 | 22 | 549 | 5.53e-158 | 463 |
| Msa1383190 | AT3G24840.2 | 45.931 | 553 | 253 | 11 | 1 | 532 | 22 | 549 | 5.53e-158 | 463 |
| Msa1383190 | AT3G24840.7 | 45.848 | 554 | 253 | 11 | 1 | 532 | 22 | 550 | 1.32e-157 | 462 |
| Msa1383190 | AT3G24840.3 | 45.848 | 554 | 253 | 11 | 1 | 532 | 22 | 550 | 1.32e-157 | 462 |
| Msa1383190 | AT3G24840.5 | 45.848 | 554 | 253 | 11 | 1 | 532 | 22 | 550 | 1.32e-157 | 462 |
| Msa1383190 | AT1G19650.2 | 47.913 | 503 | 216 | 9 | 80 | 543 | 33 | 528 | 3.56e-152 | 447 |
| Msa1383190 | AT5G56160.1 | 38.840 | 569 | 304 | 16 | 5 | 544 | 19 | 572 | 2.72e-128 | 387 |
| Msa1383190 | AT5G56160.3 | 38.840 | 569 | 304 | 16 | 5 | 544 | 19 | 572 | 2.72e-128 | 387 |
| Msa1383190 | AT1G55690.3 | 38.358 | 597 | 292 | 12 | 1 | 532 | 20 | 605 | 3.67e-124 | 378 |
| Msa1383190 | AT1G55690.2 | 38.358 | 597 | 292 | 12 | 1 | 532 | 20 | 605 | 5.57e-124 | 377 |
| Msa1383190 | AT1G55690.4 | 38.358 | 597 | 292 | 12 | 1 | 532 | 20 | 605 | 5.57e-124 | 377 |
| Msa1383190 | AT1G55690.1 | 38.358 | 597 | 292 | 12 | 1 | 532 | 20 | 605 | 5.57e-124 | 377 |
| Msa1383190 | AT1G55690.5 | 38.358 | 597 | 292 | 12 | 1 | 532 | 20 | 605 | 5.57e-124 | 377 |
| Msa1383190 | AT5G56160.2 | 52.848 | 316 | 147 | 2 | 5 | 318 | 19 | 334 | 3.43e-121 | 366 |
| Msa1383190 | AT5G47510.2 | 51.685 | 267 | 127 | 1 | 46 | 312 | 20 | 284 | 1.14e-103 | 315 |
| Msa1383190 | AT5G47510.4 | 51.685 | 267 | 127 | 1 | 46 | 312 | 20 | 284 | 2.35e-103 | 316 |
| Msa1383190 | AT5G47510.1 | 51.685 | 267 | 127 | 1 | 46 | 312 | 19 | 283 | 2.76e-103 | 316 |
| Msa1383190 | AT5G47510.3 | 53.097 | 226 | 106 | 0 | 87 | 312 | 2 | 227 | 2.91e-93 | 288 |
| Msa1383190 | AT5G47730.4 | 28.631 | 241 | 157 | 5 | 55 | 286 | 7 | 241 | 3.77e-21 | 95.5 |
| Msa1383190 | AT5G47730.1 | 28.631 | 241 | 157 | 5 | 55 | 286 | 7 | 241 | 3.77e-21 | 95.5 |
| Msa1383190 | AT1G55840.2 | 28.708 | 209 | 141 | 3 | 80 | 286 | 12 | 214 | 4.73e-18 | 85.5 |
| Msa1383190 | AT1G55840.1 | 28.708 | 209 | 141 | 3 | 80 | 286 | 39 | 241 | 8.03e-18 | 85.1 |
| Msa1383190 | AT5G47730.2 | 29.167 | 192 | 128 | 3 | 97 | 286 | 1 | 186 | 1.48e-16 | 80.9 |
| Msa1383190 | AT5G47730.3 | 29.167 | 192 | 128 | 3 | 97 | 286 | 1 | 186 | 1.48e-16 | 80.9 |
| Msa1383190 | AT1G72160.1 | 27.193 | 228 | 139 | 7 | 79 | 293 | 166 | 379 | 4.35e-16 | 81.6 |
| Msa1383190 | AT1G01630.1 | 30.137 | 219 | 134 | 5 | 72 | 289 | 45 | 245 | 5.75e-16 | 78.6 |
| Msa1383190 | AT1G75170.2 | 30.841 | 214 | 120 | 9 | 82 | 289 | 49 | 240 | 2.91e-13 | 71.2 |
| Msa1383190 | AT1G75170.1 | 30.841 | 214 | 120 | 9 | 82 | 289 | 49 | 240 | 2.91e-13 | 71.2 |
| Msa1383190 | AT3G51670.1 | 26.695 | 236 | 145 | 9 | 79 | 306 | 84 | 299 | 3.39e-12 | 68.9 |
| Msa1383190 | AT4G09160.3 | 24.779 | 226 | 147 | 8 | 79 | 293 | 316 | 529 | 1.35e-11 | 67.8 |
| Msa1383190 | AT4G09160.2 | 24.779 | 226 | 147 | 8 | 79 | 293 | 316 | 529 | 1.38e-11 | 67.8 |
| Msa1383190 | AT4G09160.1 | 24.779 | 226 | 147 | 8 | 79 | 293 | 341 | 554 | 1.50e-11 | 67.8 |
| Msa1383190 | AT4G36640.1 | 28.311 | 219 | 131 | 9 | 80 | 293 | 44 | 241 | 6.51e-11 | 63.9 |
| Msa1383190 | AT4G36640.3 | 28.311 | 219 | 131 | 9 | 80 | 293 | 44 | 241 | 6.51e-11 | 63.9 |
Find 113 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCAAAGCACAACTATTT+TGG | 0.160946 | tig0020577:-3733 | Msa1383190:CDS |
| TCAATGCTGGTTCTGGATTT+AGG | 0.204254 | tig0020577:-2748 | Msa1383190:CDS |
| ACAATTTGTTGGTGGAATTA+TGG | 0.206593 | tig0020577:-1346 | Msa1383190:CDS |
| ATCACAGAAGCAGCACTTTA+TGG | 0.247624 | tig0020577:-1267 | Msa1383190:CDS |
| CTTAAGTGGAGGAAGGAATT+TGG | 0.250834 | tig0020577:-4153 | Msa1383190:CDS |
| AAAACTTACACCATAGGATT+TGG | 0.251608 | tig0020577:+2023 | None:intergenic |
| TTCATCATCAATGCTGGTTC+TGG | 0.265601 | tig0020577:-2755 | Msa1383190:CDS |
| CTTGACCGACCTGTCAAAAT+TGG | 0.280566 | tig0020577:-5697 | Msa1383190:intron |
| GACACTTGATGTTCATTGTT+TGG | 0.296140 | tig0020577:-2052 | Msa1383190:CDS |
| TTGAGGTGGTCTTGGGATCT+AGG | 0.297103 | tig0020577:+2699 | None:intergenic |
| TACTCATTGTTTGAAATTGC+AGG | 0.299234 | tig0020577:+1204 | None:intergenic |
| TGGAATTATGGCACTTGTTA+TGG | 0.309546 | tig0020577:-1334 | Msa1383190:CDS |
| CAGTGAACTTCCAGAGTTCT+TGG | 0.325219 | tig0020577:-2371 | Msa1383190:CDS |
| ACCTGTTTACATTGAAAGAT+TGG | 0.335171 | tig0020577:-3886 | Msa1383190:CDS |
| GCTACTTGTCATGCGAATTA+TGG | 0.337136 | tig0020577:+1302 | None:intergenic |
| GATTGTTACTCCAACAATAA+TGG | 0.338457 | tig0020577:-1393 | Msa1383190:CDS |
| AACAATAATGGAATGAATTC+TGG | 0.350361 | tig0020577:-1381 | Msa1383190:CDS |
| CAAGTTCTACTTGTCGAGTA+AGG | 0.352182 | tig0020577:+704 | None:intergenic |
| AATTTCAAACAATGAGTATA+TGG | 0.354504 | tig0020577:-1199 | Msa1383190:CDS |
| CCCAATCTTTCAATGTAAAC+AGG | 0.377140 | tig0020577:+3885 | None:intergenic |
| TACACAATAAAAGCTTTATC+CGG | 0.383318 | tig0020577:-2144 | Msa1383190:CDS |
| AAACTTACACCATAGGATTT+GGG | 0.384470 | tig0020577:+2024 | None:intergenic |
| CAATGAACATCAAGTGTCTC+TGG | 0.400837 | tig0020577:+2057 | None:intergenic |
| TGATGATGAACATACGGTTC+AGG | 0.404329 | tig0020577:+2768 | None:intergenic |
| AGAATTCATTCCATTATTGT+TGG | 0.414930 | tig0020577:+1383 | None:intergenic |
| ATGAATTAGATGGCTCAAAA+TGG | 0.425006 | tig0020577:-2177 | Msa1383190:intron |
| GGAATTATGGCACTTGTTAT+GGG | 0.425311 | tig0020577:-1333 | Msa1383190:CDS |
| GGAGTTGGGTGCAACCAAAA+AGG | 0.425560 | tig0020577:-1052 | Msa1383190:intron |
| ACTTGTACTTGTGCTGATAA+AGG | 0.426503 | tig0020577:-2343 | Msa1383190:CDS |
| CCTGTTTACATTGAAAGATT+GGG | 0.431538 | tig0020577:-3885 | Msa1383190:CDS |
| AAAACTACCTTCAAGATCTC+TGG | 0.441339 | tig0020577:+2283 | None:intergenic |
| CATCCAAAATAGTTGTGCTT+TGG | 0.441578 | tig0020577:+3730 | None:intergenic |
| GTTCTGGATTTAGGCTATTG+TGG | 0.444798 | tig0020577:-2739 | Msa1383190:CDS |
| CAGAGGCTTCAGAAGATTGA+TGG | 0.450399 | tig0020577:-3370 | Msa1383190:CDS |
| ACAAAGCAGTTGATTCTTCG+TGG | 0.451912 | tig0020577:-1783 | Msa1383190:CDS |
| CAGGGTCAGTACTCTTGAAC+AGG | 0.455630 | tig0020577:-1073 | Msa1383190:CDS |
| CATCAATCTTCTGAAGCCTC+TGG | 0.457843 | tig0020577:+3371 | None:intergenic |
| CAGTACTCTTGAACAGGAGT+TGG | 0.465953 | tig0020577:-1067 | Msa1383190:CDS |
| CTAATTGGACTTTAGGCACT+AGG | 0.474315 | tig0020577:-733 | Msa1383190:intron |
| TGATTCATTGACCAGGTCCT+AGG | 0.474555 | tig0020577:-2589 | Msa1383190:intron |
| TACTATCCACAAGGACATCA+TGG | 0.474884 | tig0020577:-3927 | Msa1383190:CDS |
| AAAAGCTTTATCCGGGGTTG+AGG | 0.482536 | tig0020577:-2136 | Msa1383190:CDS |
| TGCTTGAAGTCATTGATGCC+AGG | 0.484512 | tig0020577:-2546 | Msa1383190:intron |
| TCAACTGCTTTGTCAAGTAC+TGG | 0.487930 | tig0020577:+1793 | None:intergenic |
| TTTGCTGCAATTGAACATGC+AGG | 0.488698 | tig0020577:+3765 | None:intergenic |
| AGGACATCATGGAGTTGATA+AGG | 0.489174 | tig0020577:-3916 | Msa1383190:CDS |
| AGTGAACTTCCAGAGTTCTT+GGG | 0.490368 | tig0020577:-2370 | Msa1383190:CDS |
| TGACTTCAAGCAACTTGCTC+TGG | 0.490990 | tig0020577:+2557 | None:intergenic |
| TGCTATCTGACAAGGGTCCA+TGG | 0.491415 | tig0020577:-2312 | Msa1383190:CDS |
| ACTCGACAAGTAGAACTTGA+AGG | 0.493504 | tig0020577:-700 | Msa1383190:CDS |
| ATGAGGATCATCATGCTTTG+AGG | 0.497087 | tig0020577:+5058 | None:intergenic |
| ACACAATAAAAGCTTTATCC+GGG | 0.498005 | tig0020577:-2143 | Msa1383190:CDS |
| GATGATGAACATACGGTTCA+GGG | 0.502765 | tig0020577:+2769 | None:intergenic |
| GGATTTAGCAAACAATTTGT+TGG | 0.503430 | tig0020577:-1357 | Msa1383190:CDS |
| TGCTCTGGTATTTGTTACCT+AGG | 0.510194 | tig0020577:+2572 | None:intergenic |
| TTGGATCAACCCAAATCCTA+TGG | 0.511616 | tig0020577:-2033 | Msa1383190:CDS |
| AATTGCAGGTGCTTTCATCA+TGG | 0.511679 | tig0020577:+1218 | None:intergenic |
| AGTACTCTTGAACAGGAGTT+GGG | 0.513262 | tig0020577:-1066 | Msa1383190:CDS |
| ATTTGGTGCTGACACTATCA+TGG | 0.514322 | tig0020577:-4136 | Msa1383190:CDS |
| TTTCCTAAAACTTACACCAT+AGG | 0.515333 | tig0020577:+2017 | None:intergenic |
| TTTAGCAAACAATTTGTTGG+TGG | 0.520699 | tig0020577:-1354 | Msa1383190:CDS |
| ACAGGTCGGTCAAGAGGTGC+GGG | 0.532165 | tig0020577:+5706 | None:intergenic |
| CAAGTACCACCCAAGAACTC+TGG | 0.533812 | tig0020577:+2361 | None:intergenic |
| TGCTTAATAATGCTCTAACC+AGG | 0.535342 | tig0020577:-1092 | Msa1383190:CDS |
| CCCTCTCAAACTCTCGTACA+TGG | 0.536103 | tig0020577:+3805 | None:intergenic |
| TGAGGATCATCATGCTTTGA+GGG | 0.539591 | tig0020577:+5059 | None:intergenic |
| TGTGGACAGATATGCTTAAG+TGG | 0.542108 | tig0020577:-4167 | Msa1383190:CDS |
| AAGATCTCTGGATCATTCCA+TGG | 0.542169 | tig0020577:+2295 | None:intergenic |
| TTCAGCCATGCGCTTCATCA+TGG | 0.544493 | tig0020577:+1176 | None:intergenic |
| TGTTACCTTAGCATCATATG+AGG | 0.545245 | tig0020577:+5041 | None:intergenic |
| AAGTTCTACTTGTCGAGTAA+GGG | 0.546049 | tig0020577:+705 | None:intergenic |
| CGTATGTTCATCATCAATGC+TGG | 0.547791 | tig0020577:-2761 | Msa1383190:CDS |
| GACAAATACGTGCTTTCGAA+AGG | 0.549204 | tig0020577:-1742 | Msa1383190:intron |
| GACAGGTCGGTCAAGAGGTG+CGG | 0.549720 | tig0020577:+5705 | None:intergenic |
| AAGGGTTGGGTCTATAAAGA+AGG | 0.550214 | tig0020577:-5240 | Msa1383190:CDS |
| TTTGTCAAGTACTGGAACAA+AGG | 0.552073 | tig0020577:+1801 | None:intergenic |
| ATGATCCTCATATGATGCTA+AGG | 0.554588 | tig0020577:-5046 | Msa1383190:intron |
| AGAAGAAACTGCATATCAGA+AGG | 0.555317 | tig0020577:-2097 | Msa1383190:CDS |
| AGTTATGTCTATCTGTATTG+AGG | 0.566228 | tig0020577:-5153 | Msa1383190:CDS |
| CATCATGGAGTTGATAAGGA+TGG | 0.566925 | tig0020577:-3912 | Msa1383190:CDS |
| AAGTATGAACAAAGCTGCAA+GGG | 0.567227 | tig0020577:-3401 | Msa1383190:CDS |
| CAGCATTGATGATGAACATA+CGG | 0.574837 | tig0020577:+2762 | None:intergenic |
| GAATGATCCAGAGATCTTGA+AGG | 0.575374 | tig0020577:-2290 | Msa1383190:intron |
| GAAGTATGAACAAAGCTGCA+AGG | 0.578601 | tig0020577:-3402 | Msa1383190:CDS |
| TAGATGGCTCAAAATGGTGT+TGG | 0.582857 | tig0020577:-2171 | Msa1383190:CDS |
| TCATGAGATGGAACATTCTG+AGG | 0.585895 | tig0020577:-5276 | Msa1383190:exon |
| GGCAACTCAGTGTATTATGA+TGG | 0.587600 | tig0020577:-1243 | Msa1383190:CDS |
| TGTAAACAAAGGTCATGAGA+TGG | 0.590589 | tig0020577:-5288 | Msa1383190:intron |
| TCAACTCCATGATGTCCTTG+TGG | 0.593727 | tig0020577:+3921 | None:intergenic |
| GCTTAATAATGCTCTAACCA+GGG | 0.597448 | tig0020577:-1091 | Msa1383190:CDS |
| AATAATGGAATGAATTCTGG+TGG | 0.608682 | tig0020577:-1378 | Msa1383190:CDS |
| CAATCTTCTGAAGCCTCTGG+AGG | 0.609585 | tig0020577:+3374 | None:intergenic |
| ACCATGTACGAGAGTTTGAG+AGG | 0.609926 | tig0020577:-3806 | Msa1383190:CDS |
| TAGAGAAAACAAAACAAATG+TGG | 0.610144 | tig0020577:-4185 | Msa1383190:CDS |
| CACAATAAAAGCTTTATCCG+GGG | 0.611558 | tig0020577:-2142 | Msa1383190:CDS |
| AGATATGCTTAAGTGGAGGA+AGG | 0.618590 | tig0020577:-4160 | Msa1383190:CDS |
| GAAGAAACTGCATATCAGAA+GGG | 0.622435 | tig0020577:-2096 | Msa1383190:CDS |
| TGGATGCATGCTATCTGACA+AGG | 0.622907 | tig0020577:-2320 | Msa1383190:CDS |
| CTGCAAGGGATCTCCTCCAG+AGG | 0.649316 | tig0020577:-3387 | Msa1383190:CDS |
| TGTACTTGTGCTGATAAAGG+TGG | 0.649664 | tig0020577:-2340 | Msa1383190:CDS |
| GCATGACAAGTAGCATGCCA+AGG | 0.652880 | tig0020577:-1293 | Msa1383190:CDS |
| GAACTTCCAGAGTTCTTGGG+TGG | 0.657539 | tig0020577:-2367 | Msa1383190:CDS |
| GGTTGGGTCTATAAAGAAGG+TGG | 0.673399 | tig0020577:-5237 | Msa1383190:CDS |
| CCATGTACGAGAGTTTGAGA+GGG | 0.676404 | tig0020577:-3805 | Msa1383190:CDS |
| GTTGTTGCAAGTAACATCAG+TGG | 0.679229 | tig0020577:-3844 | Msa1383190:CDS |
| ACAGAAGCAGCACTTTATGG+TGG | 0.688016 | tig0020577:-1264 | Msa1383190:CDS |
| CTGTTCAAGAGTACTGACCC+TGG | 0.690920 | tig0020577:+1074 | None:intergenic |
| GGACAGATATGCTTAAGTGG+AGG | 0.704066 | tig0020577:-4164 | Msa1383190:CDS |
| GTTCTAAAATACTATCCACA+AGG | 0.704171 | tig0020577:-3936 | Msa1383190:CDS |
| GGATGCATGCTATCTGACAA+GGG | 0.704740 | tig0020577:-2319 | Msa1383190:CDS |
| TGATGGTGACAACTATCCTG+AGG | 0.705159 | tig0020577:-3353 | Msa1383190:intron |
| TATGGCCATGATGAAGCGCA+TGG | 0.713241 | tig0020577:-1181 | Msa1383190:CDS |
| TGGTGCTGACACTATCATGG+AGG | 0.730519 | tig0020577:-4133 | Msa1383190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATTTTATTTTTT+TGG | + | tig0020577:1032-1051 | None:intergenic | 0.0% |
| !!! | ATTTTTTATTTATTTTTTTT+AGG | - | tig0020577:2297-2316 | Msa1383190:CDS | 0.0% |
| !!! | TTTTTTATTTATTTTTTTTA+GGG | - | tig0020577:2298-2317 | Msa1383190:CDS | 0.0% |
| !!! | TTTTTATTTATTTTTAATAA+TGG | + | tig0020577:4947-4966 | None:intergenic | 0.0% |
| !!! | ATGATTTATTTATTTTTCAT+TGG | + | tig0020577:2273-2292 | None:intergenic | 10.0% |
| !! | TTTATTACAAGTTATTATTA+CGG | - | tig0020577:2869-2888 | Msa1383190:intron | 10.0% |
| !!! | AAAAATCAATGAATTTTATA+AGG | + | tig0020577:3922-3941 | None:intergenic | 10.0% |
| !!! | TTCTATGTTATTTATTGATA+AGG | - | tig0020577:994-1013 | Msa1383190:intron | 15.0% |
| !! | TTATTTATTGATAAGGTAAA+AGG | - | tig0020577:1001-1020 | Msa1383190:intron | 15.0% |
| !!! | TTTTTTTATCAATTGATGTT+TGG | + | tig0020577:1822-1841 | None:intergenic | 15.0% |
| !!! | TGATTTTGTAAAATAGATTT+TGG | + | tig0020577:1974-1993 | None:intergenic | 15.0% |
| !!! | AAATAGTTTTTTCTTCTAAT+TGG | + | tig0020577:2737-2756 | None:intergenic | 15.0% |
| !! | TTAAAAATATTATGTCACAA+AGG | + | tig0020577:4137-4156 | None:intergenic | 15.0% |
| !!! | AAATTTAAGATAAACAAACA+AGG | + | tig0020577:4390-4409 | None:intergenic | 15.0% |
| !! | TTTCATTAACTAATGAAATT+CGG | + | tig0020577:4479-4498 | None:intergenic | 15.0% |
| !!! | AACACACAATATTTTAAAAA+AGG | + | tig0020577:4533-4552 | None:intergenic | 15.0% |
| !! | AGCTTATAAGTATATAAAAA+TGG | + | tig0020577:4765-4784 | None:intergenic | 15.0% |
| !!! | ATTGCTTCTTTATTTTATTT+TGG | - | tig0020577:5352-5371 | Msa1383190:intron | 15.0% |
| !!! | TTGCTTCTTTATTTTATTTT+GGG | - | tig0020577:5353-5372 | Msa1383190:intron | 15.0% |
| !! | TGAAATGTTAATGTTATGAT+TGG | - | tig0020577:837-856 | Msa1383190:intron | 20.0% |
| !!! | TTTCTTTTTCTTGTAAACAA+AGG | - | tig0020577:1075-1094 | Msa1383190:CDS | 20.0% |
| !! | AAAAATTCATTCACCAAAAA+GGG | - | tig0020577:1183-1202 | Msa1383190:CDS | 20.0% |
| !! | CAAACTTGAATCAATTATAA+AGG | + | tig0020577:1437-1456 | None:intergenic | 20.0% |
| !! | GAATCAATTCTCAAATTTAT+TGG | - | tig0020577:1508-1527 | Msa1383190:intron | 20.0% |
| !!! | GATATAATTGATTTTGAAAC+TGG | + | tig0020577:1733-1752 | None:intergenic | 20.0% |
| !!! | AAATCGATTCTCAAATTTAT+TGG | - | tig0020577:1786-1805 | Msa1383190:CDS | 20.0% |
| !!! | TTTTGGTTTAAATCAAATCA+AGG | + | tig0020577:1957-1976 | None:intergenic | 20.0% |
| !!! | ATTTGATTTCAATGGTATAA+TGG | - | tig0020577:2111-2130 | Msa1383190:CDS | 20.0% |
| !! | TTTATGGTAACTATCATTTA+AGG | + | tig0020577:2765-2784 | None:intergenic | 20.0% |
| !! | TTCTAATTGTTATGTTCATA+TGG | - | tig0020577:2898-2917 | Msa1383190:intron | 20.0% |
| !! | TAATTACTAATTAGCATGAT+TGG | - | tig0020577:2935-2954 | Msa1383190:intron | 20.0% |
| !! | ATAGTTAGTTAATGAATATC+AGG | - | tig0020577:3132-3151 | Msa1383190:intron | 20.0% |
| !! | TTAACACCTAATAAAAACTA+TGG | - | tig0020577:3248-3267 | Msa1383190:intron | 20.0% |
| !!! | CAAGAAAATTTTTCTACATT+TGG | + | tig0020577:3410-3429 | None:intergenic | 20.0% |
| !!! | CAAATGTAGAAAAATTTTCT+TGG | - | tig0020577:3408-3427 | Msa1383190:CDS | 20.0% |
| !! | TAAAGCAAAGAAAAACAATA+AGG | - | tig0020577:4157-4176 | Msa1383190:CDS | 20.0% |
| !! | ATAAGGTAATTATATTTCCT+TGG | - | tig0020577:4174-4193 | Msa1383190:CDS | 20.0% |
| !!! | TATTTTAAAAAAGGTAGCAA+TGG | + | tig0020577:4524-4543 | None:intergenic | 20.0% |
| !! | AATTTCAAACAATGAGTATA+TGG | - | tig0020577:5175-5194 | Msa1383190:CDS | 20.0% |
| !!! | TAACTTTTGCAAAATAAAAG+TGG | - | tig0020577:5458-5477 | Msa1383190:intron | 20.0% |
| ! | TAATCATGCACTATTCTATA+TGG | - | tig0020577:790-809 | Msa1383190:intron | 25.0% |
| ! | TGCCTATTATAAAAATGTAC+AGG | - | tig0020577:945-964 | Msa1383190:intron | 25.0% |
| ! | GCCTATTATAAAAATGTACA+GGG | - | tig0020577:946-965 | Msa1383190:intron | 25.0% |
| !! | TCCCTGTACATTTTTATAAT+AGG | + | tig0020577:950-969 | None:intergenic | 25.0% |
| ! | TTTATTGATAAGGTAAAAGG+TGG | - | tig0020577:1004-1023 | Msa1383190:intron | 25.0% |
| ! | TGAGGATGAAAAAAAGAAAA+GGG | - | tig0020577:1116-1135 | Msa1383190:CDS | 25.0% |
| ! | ATGAAAAAAAGAAAAGGGTT+GGG | - | tig0020577:1121-1140 | Msa1383190:CDS | 25.0% |
| ! | CAAAAATTCATTCACCAAAA+AGG | - | tig0020577:1182-1201 | Msa1383190:CDS | 25.0% |
| ! | AAAATTCATTCACCAAAAAG+GGG | - | tig0020577:1184-1203 | Msa1383190:CDS | 25.0% |
| ! | TTTATGTCTGAATAGTAGTT+TGG | + | tig0020577:1564-1583 | None:intergenic | 25.0% |
| ! | AAGCCAAACATAACAATTTA+CGG | + | tig0020577:1692-1711 | None:intergenic | 25.0% |
| !! | ATACCTTGATTTGATTTCAA+TGG | - | tig0020577:2103-2122 | Msa1383190:CDS | 25.0% |
| ! | ATACCATTGAAATCAAATCA+AGG | + | tig0020577:2109-2128 | None:intergenic | 25.0% |
| ! | TAGAGAAAACAAAACAAATG+TGG | - | tig0020577:2189-2208 | Msa1383190:intron | 25.0% |
| !!! | GCTTGTTTTGTTTTTCTATA+AGG | - | tig0020577:2389-2408 | Msa1383190:intron | 25.0% |
| ! | CTTCTAATTGGTTATTCTTT+AGG | + | tig0020577:2725-2744 | None:intergenic | 25.0% |
| ! | TACCATAAATCTAACCAAAT+TGG | - | tig0020577:2776-2795 | Msa1383190:intron | 25.0% |
| ! | ATCCAATTTGGTTAGATTTA+TGG | + | tig0020577:2781-2800 | None:intergenic | 25.0% |
| ! | AATAAACATTATTGCCTTGT+TGG | + | tig0020577:2855-2874 | None:intergenic | 25.0% |
| !! | AATTAGCATGATTGGTAATT+AGG | - | tig0020577:2943-2962 | Msa1383190:intron | 25.0% |
| !! | ATTAGCATGATTGGTAATTA+GGG | - | tig0020577:2944-2963 | Msa1383190:intron | 25.0% |
| ! | ATTTGAACACATGATAATTG+TGG | + | tig0020577:3217-3236 | None:intergenic | 25.0% |
| !! | AGTCAACCATAGTTTTTATT+AGG | + | tig0020577:3257-3276 | None:intergenic | 25.0% |
| ! | ACTTTCATGAAAACGTAAAT+TGG | + | tig0020577:3284-3303 | None:intergenic | 25.0% |
| ! | AATCATTTCTCTTCTATCTT+AGG | - | tig0020577:3327-3346 | Msa1383190:intron | 25.0% |
| ! | ACAAGTTAAGAAGCTTAAAA+TGG | + | tig0020577:3502-3521 | None:intergenic | 25.0% |
| ! | TGGAAAGAAAAGTTCAATTA+GGG | + | tig0020577:3579-3598 | None:intergenic | 25.0% |
| !! | AATGCTTACATGAATTTTTG+AGG | + | tig0020577:3695-3714 | None:intergenic | 25.0% |
| ! | AAACTACTTACACATTTCTA+TGG | - | tig0020577:3718-3737 | Msa1383190:intron | 25.0% |
| !!! | TTTAGTTAACTTGTTAAGCA+AGG | - | tig0020577:3747-3766 | Msa1383190:CDS | 25.0% |
| ! | TAAGGAAGAATTAAGTTTAC+CGG | + | tig0020577:3904-3923 | None:intergenic | 25.0% |
| !! | TACACAATAAAAGCTTTATC+CGG | - | tig0020577:4230-4249 | Msa1383190:intron | 25.0% |
| ! | TTAAGATAAACAAACAAGGA+AGG | + | tig0020577:4386-4405 | None:intergenic | 25.0% |
| ! | AGATGAATGCTTAAGATATA+TGG | - | tig0020577:4420-4439 | Msa1383190:intron | 25.0% |
| !! | TTTAAAATATTGTGTGTTGC+AGG | - | tig0020577:4535-4554 | Msa1383190:intron | 25.0% |
| ! | AATAAGATGAAAACAGCTTA+TGG | - | tig0020577:4817-4836 | Msa1383190:intron | 25.0% |
| ! | AGAATTCATTCCATTATTGT+TGG | + | tig0020577:4994-5013 | None:intergenic | 25.0% |
| !! | AACAATAATGGAATGAATTC+TGG | - | tig0020577:4993-5012 | Msa1383190:intron | 25.0% |
| ! | TCTAGCAACGAAAAATAAAT+TGG | + | tig0020577:5411-5430 | None:intergenic | 25.0% |
| ! | TGCTTAGTATCTAAAAATGA+TGG | + | tig0020577:5436-5455 | None:intergenic | 25.0% |
| !! | TTTTGCAAAATAAAAGTGGT+TGG | - | tig0020577:5462-5481 | Msa1383190:intron | 25.0% |
| ! | TCTGTTTTGTACTAGCTAAA+AGG | - | tig0020577:814-833 | Msa1383190:intron | 30.0% |
| AATAACATAGAATGCAAGAC+AGG | + | tig0020577:986-1005 | None:intergenic | 30.0% | |
| CTGAGGATGAAAAAAAGAAA+AGG | - | tig0020577:1115-1134 | Msa1383190:CDS | 30.0% | |
| GATGAAAAAAAGAAAAGGGT+TGG | - | tig0020577:1120-1139 | Msa1383190:CDS | 30.0% | |
| AGTTATGTCTATCTGTATTG+AGG | - | tig0020577:1221-1240 | Msa1383190:CDS | 30.0% | |
| !! | CATGTTTGTACCTTTAGAAT+TGG | - | tig0020577:1370-1389 | Msa1383190:CDS | 30.0% |
| TCATACTTGACCAATTCTAA+AGG | + | tig0020577:1383-1402 | None:intergenic | 30.0% | |
| AAACATATTTCCAACCAATG+TGG | - | tig0020577:1480-1499 | Msa1383190:intron | 30.0% | |
| TGTCCGTAAATTGTTATGTT+TGG | - | tig0020577:1686-1705 | Msa1383190:intron | 30.0% | |
| ! | CTATAAGGATTTTGAATTCG+AGG | - | tig0020577:2404-2423 | Msa1383190:intron | 30.0% |
| !! | GTTCTAAAATACTATCCACA+AGG | - | tig0020577:2438-2457 | Msa1383190:intron | 30.0% |
| ACCTGTTTACATTGAAAGAT+TGG | - | tig0020577:2488-2507 | Msa1383190:intron | 30.0% | |
| CCTGTTTACATTGAAAGATT+GGG | - | tig0020577:2489-2508 | Msa1383190:intron | 30.0% | |
| TGGATAAATCAATATACCTC+AGG | + | tig0020577:3040-3059 | None:intergenic | 30.0% | |
| TGTTCTTAAAACACAACTGA+TGG | + | tig0020577:3060-3079 | None:intergenic | 30.0% | |
| CAAATCTCATCAACCATTAA+TGG | - | tig0020577:3158-3177 | Msa1383190:intron | 30.0% | |
| ATTAGGTGTTAAACTACATG+TGG | + | tig0020577:3240-3259 | None:intergenic | 30.0% | |
| CATGAAAGTTGTCAAAAACA+TGG | - | tig0020577:3295-3314 | Msa1383190:intron | 30.0% | |
| TTTCTTAACTTATGCCTCAA+GGG | + | tig0020577:3387-3406 | None:intergenic | 30.0% | |
| AACATGACCCATAGTTTAAA+TGG | - | tig0020577:3540-3559 | Msa1383190:intron | 30.0% | |
| TGGAAGTCCATTTAAACTAT+GGG | + | tig0020577:3550-3569 | None:intergenic | 30.0% | |
| TTGGAAGTCCATTTAAACTA+TGG | + | tig0020577:3551-3570 | None:intergenic | 30.0% | |
| AAGTTCAATTAGGGTGAATT+TGG | + | tig0020577:3570-3589 | None:intergenic | 30.0% | |
| GTGGAAAGAAAAGTTCAATT+AGG | + | tig0020577:3580-3599 | None:intergenic | 30.0% | |
| ACATTAATGATTCATTGACC+AGG | - | tig0020577:3778-3797 | Msa1383190:CDS | 30.0% | |
| ! | GAAAGGAGATAAATTTTACC+TGG | + | tig0020577:3849-3868 | None:intergenic | 30.0% |
| ! | ACGCTAATTTTCAATGAGAA+AGG | + | tig0020577:3866-3885 | None:intergenic | 30.0% |
| ATTTCCTTGGATGAATTAGA+TGG | - | tig0020577:4187-4206 | Msa1383190:CDS | 30.0% | |
| ATGAATTAGATGGCTCAAAA+TGG | - | tig0020577:4197-4216 | Msa1383190:CDS | 30.0% | |
| ! | ACACAATAAAAGCTTTATCC+GGG | - | tig0020577:4231-4250 | Msa1383190:intron | 30.0% |
| AAACTTACACCATAGGATTT+GGG | + | tig0020577:4353-4372 | None:intergenic | 30.0% | |
| AAAACTTACACCATAGGATT+TGG | + | tig0020577:4354-4373 | None:intergenic | 30.0% | |
| ! | AATCCTATGGTGTAAGTTTT+AGG | - | tig0020577:4354-4373 | Msa1383190:intron | 30.0% |
| TTTCCTAAAACTTACACCAT+AGG | + | tig0020577:4360-4379 | None:intergenic | 30.0% | |
| CTTAAGATATATGGCACAAT+TGG | - | tig0020577:4429-4448 | Msa1383190:intron | 30.0% | |
| TCTAATTCTGCTTGAAAAGA+AGG | + | tig0020577:4456-4475 | None:intergenic | 30.0% | |
| ATAGGCATTTATGCTATAAG+TGG | + | tig0020577:4686-4705 | None:intergenic | 30.0% | |
| ! | ACTTAAACGCAAACACTTTT+AGG | + | tig0020577:4709-4728 | None:intergenic | 30.0% |
| GTAGAAATGAAAGAACGAAA+TGG | + | tig0020577:4925-4944 | None:intergenic | 30.0% | |
| GATTGTTACTCCAACAATAA+TGG | - | tig0020577:4981-5000 | Msa1383190:intron | 30.0% | |
| ! | AATAATGGAATGAATTCTGG+TGG | - | tig0020577:4996-5015 | Msa1383190:intron | 30.0% |
| GGATTTAGCAAACAATTTGT+TGG | - | tig0020577:5017-5036 | Msa1383190:intron | 30.0% | |
| !! | TTTAGCAAACAATTTGTTGG+TGG | - | tig0020577:5020-5039 | Msa1383190:intron | 30.0% |
| !! | ACAATTTGTTGGTGGAATTA+TGG | - | tig0020577:5028-5047 | Msa1383190:intron | 30.0% |
| ! | TACTCATTGTTTGAAATTGC+AGG | + | tig0020577:5173-5192 | None:intergenic | 30.0% |
| ! | TTAAGCATTTCCTCTTTTTC+AGG | + | tig0020577:5269-5288 | None:intergenic | 30.0% |
| ! | AAGCAATACTAGTACCTTTT+TGG | + | tig0020577:5339-5358 | None:intergenic | 30.0% |
| AATTGGAGAGACTAAATTGA+TGG | + | tig0020577:5394-5413 | None:intergenic | 30.0% | |
| AATGAATTTGACTCCCTAAT+TGG | - | tig0020577:5626-5645 | Msa1383190:intron | 30.0% | |
| AAATGCATACTATACTCTGC+AGG | - | tig0020577:743-762 | Msa1383190:intron | 35.0% | |
| TGTAAACAAAGGTCATGAGA+TGG | - | tig0020577:1086-1105 | Msa1383190:CDS | 35.0% | |
| !! | TGAATTTTTGAACTTGCTCG+AGG | + | tig0020577:1172-1191 | None:intergenic | 35.0% |
| ATGATCCTCATATGATGCTA+AGG | - | tig0020577:1328-1347 | Msa1383190:CDS | 35.0% | |
| TGTTACCTTAGCATCATATG+AGG | + | tig0020577:1336-1355 | None:intergenic | 35.0% | |
| GCTAAGGTAACATTTGTGTT+TGG | - | tig0020577:1344-1363 | Msa1383190:CDS | 35.0% | |
| ! | AATTGATTCCATCACCACAT+TGG | + | tig0020577:1497-1516 | None:intergenic | 35.0% |
| TAACTCAAACGCGATTCTAA+AGG | + | tig0020577:1653-1672 | None:intergenic | 35.0% | |
| TCATCACATAATCGAACAAG+AGG | - | tig0020577:2022-2041 | Msa1383190:intron | 35.0% | |
| ACATAATCGAACAAGAGGAT+AGG | - | tig0020577:2027-2046 | Msa1383190:intron | 35.0% | |
| CATAATCGAACAAGAGGATA+GGG | - | tig0020577:2028-2047 | Msa1383190:intron | 35.0% | |
| ! | TACCATGGTCTAGATTTTTG+AGG | - | tig0020577:2150-2169 | Msa1383190:CDS | 35.0% |
| ! | ACCATGGTCTAGATTTTTGA+GGG | - | tig0020577:2151-2170 | Msa1383190:CDS | 35.0% |
| CCCAATCTTTCAATGTAAAC+AGG | + | tig0020577:2492-2511 | None:intergenic | 35.0% | |
| ! | TGACCAAAGCACAACTATTT+TGG | - | tig0020577:2641-2660 | Msa1383190:intron | 35.0% |
| CATCCAAAATAGTTGTGCTT+TGG | + | tig0020577:2647-2666 | None:intergenic | 35.0% | |
| !! | ACAACTATTTTGGATGTGCA+AGG | - | tig0020577:2651-2670 | Msa1383190:intron | 35.0% |
| AAGTATGAACAAAGCTGCAA+GGG | - | tig0020577:2973-2992 | Msa1383190:intron | 35.0% | |
| TTCTGTGACAACAATCTAAG+TGG | - | tig0020577:3095-3114 | Msa1383190:intron | 35.0% | |
| TTTCTCTTCTATCTTAGGCA+TGG | - | tig0020577:3332-3351 | Msa1383190:intron | 35.0% | |
| TTAGGCATGGCAATAGTTTA+AGG | - | tig0020577:3345-3364 | Msa1383190:intron | 35.0% | |
| TAGGCATGGCAATAGTTTAA+GGG | - | tig0020577:3346-3365 | Msa1383190:intron | 35.0% | |
| GTTTCTTAACTTATGCCTCA+AGG | + | tig0020577:3388-3407 | None:intergenic | 35.0% | |
| !! | CAGCATTGATGATGAACATA+CGG | + | tig0020577:3615-3634 | None:intergenic | 35.0% |
| !!! | TGAATTTTTGAGGTGGTCTT+GGG | + | tig0020577:3685-3704 | None:intergenic | 35.0% |
| !!! | ATGAATTTTTGAGGTGGTCT+TGG | + | tig0020577:3686-3705 | None:intergenic | 35.0% |
| !! | GCTTACATGAATTTTTGAGG+TGG | + | tig0020577:3692-3711 | None:intergenic | 35.0% |
| ! | ACTTGTACTTGTGCTGATAA+AGG | - | tig0020577:4031-4050 | Msa1383190:intron | 35.0% |
| AAAACTACCTTCAAGATCTC+TGG | + | tig0020577:4094-4113 | None:intergenic | 35.0% | |
| ! | CACAATAAAAGCTTTATCCG+GGG | - | tig0020577:4232-4251 | Msa1383190:intron | 35.0% |
| AGAAGAAACTGCATATCAGA+AGG | - | tig0020577:4277-4296 | Msa1383190:intron | 35.0% | |
| GAAGAAACTGCATATCAGAA+GGG | - | tig0020577:4278-4297 | Msa1383190:intron | 35.0% | |
| GACACTTGATGTTCATTGTT+TGG | - | tig0020577:4322-4341 | Msa1383190:intron | 35.0% | |
| AAAAAAGGTAGCAATGGAGT+TGG | + | tig0020577:4518-4537 | None:intergenic | 35.0% | |
| !! | TTTGTCAAGTACTGGAACAA+AGG | + | tig0020577:4576-4595 | None:intergenic | 35.0% |
| !!! | AACGCAAACACTTTTAGGAT+AGG | + | tig0020577:4704-4723 | None:intergenic | 35.0% |
| !! | GCTGTTTTCGTAAGTTATCA+TGG | - | tig0020577:4782-4801 | Msa1383190:intron | 35.0% |
| AGACTATGTCAGAGAGTTTA+TGG | + | tig0020577:4861-4880 | None:intergenic | 35.0% | |
| ! | TGGAATTATGGCACTTGTTA+TGG | - | tig0020577:5040-5059 | Msa1383190:intron | 35.0% |
| !! | GGAATTATGGCACTTGTTAT+GGG | - | tig0020577:5041-5060 | Msa1383190:intron | 35.0% |
| TGCTTAATAATGCTCTAACC+AGG | - | tig0020577:5282-5301 | Msa1383190:intron | 35.0% | |
| GCTTAATAATGCTCTAACCA+GGG | - | tig0020577:5283-5302 | Msa1383190:intron | 35.0% | |
| TAGTGCCTAAAGTCCAATTA+GGG | + | tig0020577:5642-5661 | None:intergenic | 35.0% | |
| AAGTTCTACTTGTCGAGTAA+GGG | + | tig0020577:5672-5691 | None:intergenic | 35.0% | |
| !! | ACTCACCAATTTTGACAGGT+CGG | + | tig0020577:685-704 | None:intergenic | 40.0% |
| !! | GACTACTCACCAATTTTGAC+AGG | + | tig0020577:689-708 | None:intergenic | 40.0% |
| TCATGAGATGGAACATTCTG+AGG | - | tig0020577:1098-1117 | Msa1383190:CDS | 40.0% | |
| AAGGGTTGGGTCTATAAAGA+AGG | - | tig0020577:1134-1153 | Msa1383190:CDS | 40.0% | |
| ATTCATTCACCAAAAAGGGG+AGG | - | tig0020577:1187-1206 | Msa1383190:CDS | 40.0% | |
| ! | TTTTGATGCAGAAGAGTTGC+AGG | - | tig0020577:1248-1267 | Msa1383190:CDS | 40.0% |
| TGAGGATCATCATGCTTTGA+GGG | + | tig0020577:1318-1337 | None:intergenic | 40.0% | |
| ATGAGGATCATCATGCTTTG+AGG | + | tig0020577:1319-1338 | None:intergenic | 40.0% | |
| AAGTCAAACCTAACAGCTCA+CGG | + | tig0020577:1411-1430 | None:intergenic | 40.0% | |
| ATTTCCAACCAATGTGGTGA+TGG | - | tig0020577:1486-1505 | Msa1383190:intron | 40.0% | |
| CACATACGTACATGAGCTTT+GGG | - | tig0020577:1880-1899 | Msa1383190:intron | 40.0% | |
| CCATGGTACATTAACGTTAC+AGG | + | tig0020577:2138-2157 | None:intergenic | 40.0% | |
| CCTGTAACGTTAATGTACCA+TGG | - | tig0020577:2135-2154 | Msa1383190:CDS | 40.0% | |
| TGTGGACAGATATGCTTAAG+TGG | - | tig0020577:2207-2226 | Msa1383190:intron | 40.0% | |
| AGATATGCTTAAGTGGAGGA+AGG | - | tig0020577:2214-2233 | Msa1383190:intron | 40.0% | |
| CTTAAGTGGAGGAAGGAATT+TGG | - | tig0020577:2221-2240 | Msa1383190:intron | 40.0% | |
| !! | ATTTGGTGCTGACACTATCA+TGG | - | tig0020577:2238-2257 | Msa1383190:intron | 40.0% |
| TACTATCCACAAGGACATCA+TGG | - | tig0020577:2447-2466 | Msa1383190:intron | 40.0% | |
| !! | AGGACATCATGGAGTTGATA+AGG | - | tig0020577:2458-2477 | Msa1383190:intron | 40.0% |
| !! | CATCATGGAGTTGATAAGGA+TGG | - | tig0020577:2462-2481 | Msa1383190:intron | 40.0% |
| GTTGTTGCAAGTAACATCAG+TGG | - | tig0020577:2530-2549 | Msa1383190:intron | 40.0% | |
| TTTGCTGCAATTGAACATGC+AGG | + | tig0020577:2612-2631 | None:intergenic | 40.0% | |
| !! | TATTTTGGATGTGCAAGGAG+TGG | - | tig0020577:2656-2675 | Msa1383190:intron | 40.0% |
| CAATGGTAGAGGATCCAATT+TGG | + | tig0020577:2793-2812 | None:intergenic | 40.0% | |
| ATCCAGGTTCAAATCCAACA+AGG | - | tig0020577:2838-2857 | Msa1383190:intron | 40.0% | |
| GAAGTATGAACAAAGCTGCA+AGG | - | tig0020577:2972-2991 | Msa1383190:intron | 40.0% | |
| ! | CGCTAATGAAGCACCATTAA+TGG | + | tig0020577:3174-3193 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+AGG | - | tig0020577:3370-3389 | Msa1383190:CDS | 40.0% |
| !! | CTTCTTAACTTGTGCCCTAA+GGG | - | tig0020577:3509-3528 | Msa1383190:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | tig0020577:3526-3545 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | tig0020577:3527-3546 | None:intergenic | 40.0% |
| GATGATGAACATACGGTTCA+GGG | + | tig0020577:3608-3627 | None:intergenic | 40.0% | |
| ! | TGATGATGAACATACGGTTC+AGG | + | tig0020577:3609-3628 | None:intergenic | 40.0% |
| CGTATGTTCATCATCAATGC+TGG | - | tig0020577:3613-3632 | Msa1383190:intron | 40.0% | |
| !! | TTCATCATCAATGCTGGTTC+TGG | - | tig0020577:3619-3638 | Msa1383190:intron | 40.0% |
| !! | TCAATGCTGGTTCTGGATTT+AGG | - | tig0020577:3626-3645 | Msa1383190:intron | 40.0% |
| ! | GTTCTGGATTTAGGCTATTG+TGG | - | tig0020577:3635-3654 | Msa1383190:intron | 40.0% |
| ! | TGCTCTGGTATTTGTTACCT+AGG | + | tig0020577:3805-3824 | None:intergenic | 40.0% |
| GCGTGACTTAATTAAGAAGC+CGG | - | tig0020577:3882-3901 | Msa1383190:CDS | 40.0% | |
| AGTGAACTTCCAGAGTTCTT+GGG | - | tig0020577:4004-4023 | Msa1383190:intron | 40.0% | |
| ! | TGTACTTGTGCTGATAAAGG+TGG | - | tig0020577:4034-4053 | Msa1383190:intron | 40.0% |
| AAGATCTCTGGATCATTCCA+TGG | + | tig0020577:4082-4101 | None:intergenic | 40.0% | |
| GAATGATCCAGAGATCTTGA+AGG | - | tig0020577:4084-4103 | Msa1383190:intron | 40.0% | |
| TGAGCCATCTAATTCATCCA+AGG | + | tig0020577:4194-4213 | None:intergenic | 40.0% | |
| TAGATGGCTCAAAATGGTGT+TGG | - | tig0020577:4203-4222 | Msa1383190:CDS | 40.0% | |
| CAATGAACATCAAGTGTCTC+TGG | + | tig0020577:4320-4339 | None:intergenic | 40.0% | |
| TTGGATCAACCCAAATCCTA+TGG | - | tig0020577:4341-4360 | Msa1383190:intron | 40.0% | |
| TCAACTGCTTTGTCAAGTAC+TGG | + | tig0020577:4584-4603 | None:intergenic | 40.0% | |
| ! | ACAAAGCAGTTGATTCTTCG+TGG | - | tig0020577:4591-4610 | Msa1383190:intron | 40.0% |
| GACAAATACGTGCTTTCGAA+AGG | - | tig0020577:4632-4651 | Msa1383190:intron | 40.0% | |
| AATACGTGCTTTCGAAAGGT+AGG | - | tig0020577:4636-4655 | Msa1383190:intron | 40.0% | |
| GAGTAACAATCTGCAGCATA+AGG | + | tig0020577:4972-4991 | None:intergenic | 40.0% | |
| GCTACTTGTCATGCGAATTA+TGG | + | tig0020577:5075-5094 | None:intergenic | 40.0% | |
| ATCACAGAAGCAGCACTTTA+TGG | - | tig0020577:5107-5126 | Msa1383190:CDS | 40.0% | |
| GGCAACTCAGTGTATTATGA+TGG | - | tig0020577:5131-5150 | Msa1383190:CDS | 40.0% | |
| !!! | AGCATTTCCTCTTTTTCAGG+AGG | + | tig0020577:5266-5285 | None:intergenic | 40.0% |
| AGTACTCTTGAACAGGAGTT+GGG | - | tig0020577:5308-5327 | Msa1383190:intron | 40.0% | |
| TGACTCCCTAATTGGACTTT+AGG | - | tig0020577:5634-5653 | Msa1383190:intron | 40.0% | |
| CTAGTGCCTAAAGTCCAATT+AGG | + | tig0020577:5643-5662 | None:intergenic | 40.0% | |
| CTAATTGGACTTTAGGCACT+AGG | - | tig0020577:5641-5660 | Msa1383190:intron | 40.0% | |
| CAAGTTCTACTTGTCGAGTA+AGG | + | tig0020577:5673-5692 | None:intergenic | 40.0% | |
| ACTCGACAAGTAGAACTTGA+AGG | - | tig0020577:5674-5693 | Msa1383190:intron | 40.0% | |
| !! | ATTTTGACAGGTCGGTCAAG+AGG | + | tig0020577:677-696 | None:intergenic | 45.0% |
| CTTGACCGACCTGTCAAAAT+TGG | - | tig0020577:677-696 | Msa1383190:CDS | 45.0% | |
| GGTTGGGTCTATAAAGAAGG+TGG | - | tig0020577:1137-1156 | Msa1383190:CDS | 45.0% | |
| TGATTTGACCGTGAGCTGTT+AGG | - | tig0020577:1400-1419 | Msa1383190:intron | 45.0% | |
| GATTCCATCACCACATTGGT+TGG | + | tig0020577:1493-1512 | None:intergenic | 45.0% | |
| CCAAAGCTCATGTACGTATG+TGG | + | tig0020577:1882-1901 | None:intergenic | 45.0% | |
| CCACATACGTACATGAGCTT+TGG | - | tig0020577:1879-1898 | Msa1383190:intron | 45.0% | |
| GCCCTCAAAAATCTAGACCA+TGG | + | tig0020577:2155-2174 | None:intergenic | 45.0% | |
| GGACAGATATGCTTAAGTGG+AGG | - | tig0020577:2210-2229 | Msa1383190:intron | 45.0% | |
| TCAACTCCATGATGTCCTTG+TGG | + | tig0020577:2456-2475 | None:intergenic | 45.0% | |
| ACCATGTACGAGAGTTTGAG+AGG | - | tig0020577:2568-2587 | Msa1383190:CDS | 45.0% | |
| CCATGTACGAGAGTTTGAGA+GGG | - | tig0020577:2569-2588 | Msa1383190:CDS | 45.0% | |
| GCATCATACTGCAATGGTAG+AGG | + | tig0020577:2804-2823 | None:intergenic | 45.0% | |
| ATTGCAGTATGATGCTGCAG+CGG | - | tig0020577:2809-2828 | Msa1383190:intron | 45.0% | |
| ! | TGCCTTGTTGGATTTGAACC+TGG | + | tig0020577:2843-2862 | None:intergenic | 45.0% |
| !! | CATCAATCTTCTGAAGCCTC+TGG | + | tig0020577:3006-3025 | None:intergenic | 45.0% |
| CAGAGGCTTCAGAAGATTGA+TGG | - | tig0020577:3004-3023 | Msa1383190:intron | 45.0% | |
| ! | TGATGGTGACAACTATCCTG+AGG | - | tig0020577:3021-3040 | Msa1383190:intron | 45.0% |
| !! | GCTTCTTAACTTGTGCCCTA+AGG | - | tig0020577:3508-3527 | Msa1383190:intron | 45.0% |
| TGATTCATTGACCAGGTCCT+AGG | - | tig0020577:3785-3804 | Msa1383190:CDS | 45.0% | |
| ! | GGTATTTGTTACCTAGGACC+TGG | + | tig0020577:3799-3818 | None:intergenic | 45.0% |
| ! | TGACTTCAAGCAACTTGCTC+TGG | + | tig0020577:3820-3839 | None:intergenic | 45.0% |
| TGCTTGAAGTCATTGATGCC+AGG | - | tig0020577:3828-3847 | Msa1383190:CDS | 45.0% | |
| ! | CAAGAACTCTGGAAGTTCAC+TGG | + | tig0020577:4005-4024 | None:intergenic | 45.0% |
| CAGTGAACTTCCAGAGTTCT+TGG | - | tig0020577:4003-4022 | Msa1383190:intron | 45.0% | |
| TGGATGCATGCTATCTGACA+AGG | - | tig0020577:4054-4073 | Msa1383190:intron | 45.0% | |
| GGATGCATGCTATCTGACAA+GGG | - | tig0020577:4055-4074 | Msa1383190:intron | 45.0% | |
| ! | AAAAGCTTTATCCGGGGTTG+AGG | - | tig0020577:4238-4257 | Msa1383190:intron | 45.0% |
| ! | GATTGTTTTCTCCTCAACCC+CGG | + | tig0020577:4252-4271 | None:intergenic | 45.0% |
| ! | GCTGCTTCTGTGATTTTCCT+TGG | + | tig0020577:5101-5120 | None:intergenic | 45.0% |
| ACAGAAGCAGCACTTTATGG+TGG | - | tig0020577:5110-5129 | Msa1383190:CDS | 45.0% | |
| !!! | TCTTTTTCAGGAGGCATGAC+AGG | + | tig0020577:5257-5276 | None:intergenic | 45.0% |
| TGTCATGCCTCCTGAAAAAG+AGG | - | tig0020577:5256-5275 | Msa1383190:CDS | 45.0% | |
| CAGTACTCTTGAACAGGAGT+TGG | - | tig0020577:5307-5326 | Msa1383190:intron | 45.0% | |
| !! | TGGTGCTGACACTATCATGG+AGG | - | tig0020577:2241-2260 | Msa1383190:intron | 50.0% |
| CCCTCTCAAACTCTCGTACA+TGG | + | tig0020577:2572-2591 | None:intergenic | 50.0% | |
| GCTGCAGCATCATACTGCAA+TGG | + | tig0020577:2810-2829 | None:intergenic | 50.0% | |
| !! | CAATCTTCTGAAGCCTCTGG+AGG | + | tig0020577:3003-3022 | None:intergenic | 50.0% |
| ! | TTGAGGTGGTCTTGGGATCT+AGG | + | tig0020577:3678-3697 | None:intergenic | 50.0% |
| GAACTTCCAGAGTTCTTGGG+TGG | - | tig0020577:4007-4026 | Msa1383190:intron | 50.0% | |
| CAAGTACCACCCAAGAACTC+TGG | + | tig0020577:4016-4035 | None:intergenic | 50.0% | |
| TGCTATCTGACAAGGGTCCA+TGG | - | tig0020577:4062-4081 | Msa1383190:intron | 50.0% | |
| GCATGACAAGTAGCATGCCA+AGG | - | tig0020577:5081-5100 | Msa1383190:CDS | 50.0% | |
| TATGGCCATGATGAAGCGCA+TGG | - | tig0020577:5193-5212 | Msa1383190:CDS | 50.0% | |
| TTCAGCCATGCGCTTCATCA+TGG | + | tig0020577:5201-5220 | None:intergenic | 50.0% | |
| !! | CTGTTCAAGAGTACTGACCC+TGG | + | tig0020577:5303-5322 | None:intergenic | 50.0% |
| CAGGGTCAGTACTCTTGAAC+AGG | - | tig0020577:5301-5320 | Msa1383190:intron | 50.0% | |
| GGAGTTGGGTGCAACCAAAA+AGG | - | tig0020577:5322-5341 | Msa1383190:intron | 50.0% | |
| ! | GCTGTGCTTCCTCCCCTTTT+TGG | + | tig0020577:1199-1218 | None:intergenic | 55.0% |
| GTATGATGCTGCAGCGGTAG+AGG | - | tig0020577:2815-2834 | Msa1383190:intron | 55.0% | |
| CATACGGTTCAGGGACTGTG+TGG | + | tig0020577:3599-3618 | None:intergenic | 55.0% | |
| ! | ACAGGTCGGTCAAGAGGTGC+GGG | + | tig0020577:671-690 | None:intergenic | 60.0% |
| GACAGGTCGGTCAAGAGGTG+CGG | + | tig0020577:672-691 | None:intergenic | 60.0% | |
| CTGCAAGGGATCTCCTCCAG+AGG | - | tig0020577:2987-3006 | Msa1383190:intron | 60.0% | |
| GCTGCAGCGGTAGAGGATCC+AGG | - | tig0020577:2822-2841 | Msa1383190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020577 | gene | 666 | 5730 | 666 | ID=Msa1383190;Name=Msa1383190 |
| tig0020577 | mRNA | 666 | 5730 | 666 | ID=Msa1383190-mRNA-1;Parent=Msa1383190;Name=Msa1383190-mRNA-1;_AED=0.12;_eAED=0.12;_QI=41|0.45|0.33|1|0.90|0.83|12|0|545 |
| tig0020577 | exon | 666 | 740 | 666 | ID=Msa1383190-mRNA-1:exon:8503;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 1053 | 1414 | 1053 | ID=Msa1383190-mRNA-1:exon:8502;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 1743 | 1839 | 1743 | ID=Msa1383190-mRNA-1:exon:8501;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 2032 | 2190 | 2032 | ID=Msa1383190-mRNA-1:exon:8500;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 2291 | 2390 | 2291 | ID=Msa1383190-mRNA-1:exon:8499;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 2547 | 2596 | 2547 | ID=Msa1383190-mRNA-1:exon:8498;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 2691 | 2792 | 2691 | ID=Msa1383190-mRNA-1:exon:8497;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 3354 | 3431 | 3354 | ID=Msa1383190-mRNA-1:exon:8496;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 3719 | 3985 | 3719 | ID=Msa1383190-mRNA-1:exon:8495;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 4134 | 4233 | 4134 | ID=Msa1383190-mRNA-1:exon:8494;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 5047 | 5299 | 5047 | ID=Msa1383190-mRNA-1:exon:8493;Parent=Msa1383190-mRNA-1 |
| tig0020577 | exon | 5698 | 5730 | 5698 | ID=Msa1383190-mRNA-1:exon:8492;Parent=Msa1383190-mRNA-1 |
| tig0020577 | five_prime_UTR | 5698 | 5730 | 5698 | ID=Msa1383190-mRNA-1:five_prime_utr;Parent=Msa1383190-mRNA-1 |
| tig0020577 | five_prime_UTR | 5292 | 5299 | 5292 | ID=Msa1383190-mRNA-1:five_prime_utr;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 5047 | 5291 | 5047 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 4134 | 4233 | 4134 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 3719 | 3985 | 3719 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 3354 | 3431 | 3354 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 2691 | 2792 | 2691 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 2547 | 2596 | 2547 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 2291 | 2390 | 2291 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 2032 | 2190 | 2032 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 1743 | 1839 | 1743 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 1053 | 1414 | 1053 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| tig0020577 | CDS | 666 | 740 | 666 | ID=Msa1383190-mRNA-1:cds;Parent=Msa1383190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
