AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177650 MtrunA17_Chr8g0348311 94.675 338 16 2 1 336 1 338 3.54e-179 499
Msa1177650 MtrunA17_Chr7g0248691 54.678 342 114 9 1 331 1 312 9.62e-104 307
Msa1177650 MtrunA17_Chr2g0293481 39.051 274 118 7 95 324 191 459 2.98e-48 169
Msa1177650 MtrunA17_Chr1g0202461 67.544 114 34 2 130 242 237 348 1.79e-46 162
Msa1177650 MtrunA17_Chr8g0387501 40.323 248 115 8 69 310 49 269 5.55e-39 139
Msa1177650 MtrunA17_Chr7g0270051 54.310 116 39 3 133 237 24 136 5.41e-35 128
Msa1177650 MtrunA17_Chr2g0284321 57.732 97 34 2 127 217 4 99 1.54e-32 120
Msa1177650 MtrunA17_Chr8g0379461 53.608 97 32 3 134 218 46 141 1.33e-28 110
Msa1177650 MtrunA17_Chr5g0401821 59.036 83 29 1 133 210 174 256 5.11e-28 110
Msa1177650 MtrunA17_Chr2g0319961 55.682 88 33 1 132 213 53 140 1.07e-27 108
Msa1177650 MtrunA17_Chr4g0071521 60.241 83 28 1 133 210 220 302 4.56e-27 108
Msa1177650 MtrunA17_Chr2g0289181 50.549 91 42 2 143 232 4 92 1.15e-26 105
Msa1177650 MtrunA17_Chr1g0147881 57.317 82 30 1 134 210 238 319 1.87e-26 107
Msa1177650 MtrunA17_Chr4g0053281 58.537 82 29 2 134 210 242 323 1.52e-25 104
Msa1177650 MtrunA17_Chr1g0184691 66.667 57 19 0 154 210 294 350 6.42e-23 97.8
Msa1177650 MtrunA17_Chr7g0228941 58.333 60 25 0 151 210 50 109 4.03e-22 90.1
Msa1177650 MtrunA17_Chr3g0139021 45.055 91 44 2 134 218 290 380 5.15e-21 92.8
Msa1177650 MtrunA17_Chr1g0194481 50.667 75 35 2 154 227 159 232 1.59e-20 90.5
Msa1177650 MtrunA17_Chr4g0051881 56.522 69 26 2 154 222 179 243 7.38e-20 89.0
Msa1177650 MtrunA17_Chr7g0218081 40.741 108 62 2 130 236 386 492 1.16e-19 89.7
Msa1177650 MtrunA17_Chr7g0218081 45.714 70 34 3 149 216 224 291 1.87e-11 65.1
Msa1177650 MtrunA17_Chr7g0270191 47.191 89 43 2 154 239 146 233 4.62e-19 85.9
Msa1177650 MtrunA17_Chr7g0270831 49.315 73 37 0 151 223 214 286 1.20e-18 86.3
Msa1177650 MtrunA17_Chr4g0051181 42.045 88 48 1 127 214 220 304 3.14e-18 85.5
Msa1177650 MtrunA17_Chr5g0443131 58.333 60 24 1 154 213 158 216 3.32e-18 84.0
Msa1177650 MtrunA17_Chr7g0238921 34.545 165 96 4 137 292 106 267 4.83e-18 83.6
Msa1177650 MtrunA17_Chr4g0075201 53.968 63 29 0 151 213 265 327 6.13e-18 84.7
Msa1177650 MtrunA17_Chr5g0418191 43.137 102 40 4 129 213 279 379 7.11e-18 84.0
Msa1177650 MtrunA17_Chr5g0418191 35.938 128 67 7 92 216 99 214 8.57e-12 65.9
Msa1177650 MtrunA17_Chr4g0001361 45.946 74 40 0 151 224 160 233 1.89e-17 81.6
Msa1177650 MtrunA17_Chr5g0418781 57.895 57 23 1 154 210 125 180 2.16e-17 80.9
Msa1177650 MtrunA17_Chr2g0288871 50.794 63 31 0 151 213 303 365 2.50e-17 82.8
Msa1177650 MtrunA17_Chr2g0294231 53.333 60 27 1 154 213 204 262 2.90e-17 82.0
Msa1177650 MtrunA17_Chr3g0099641 45.205 73 40 0 151 223 249 321 3.83e-17 82.0
Msa1177650 MtrunA17_Chr7g0263531 52.941 68 30 2 146 213 355 420 4.98e-17 81.6
Msa1177650 MtrunA17_Chr7g0263531 46.053 76 39 2 148 223 184 257 1.94e-14 73.9
Msa1177650 MtrunA17_Chr4g0042831 50.794 63 30 1 151 213 276 337 8.15e-17 80.5
Msa1177650 MtrunA17_Chr4g0042831 37.500 112 50 3 146 257 138 229 2.16e-13 70.5
Msa1177650 MtrunA17_Chr2g0333851 40.244 82 47 1 151 230 167 248 1.03e-16 79.7
Msa1177650 MtrunA17_Chr2g0302391 38.679 106 60 1 118 223 181 281 1.38e-16 80.1
Msa1177650 MtrunA17_Chr3g0101131 39.604 101 47 3 131 218 380 479 1.82e-16 80.5
Msa1177650 MtrunA17_Chr3g0101131 34.454 119 76 2 146 264 236 352 3.29e-12 67.4
Msa1177650 MtrunA17_Chr1g0150801 53.226 62 28 1 150 211 99 159 2.25e-16 75.5
Msa1177650 MtrunA17_Chr4g0025051 45.333 75 41 0 149 223 331 405 2.39e-16 80.1
Msa1177650 MtrunA17_Chr3g0126391 36.667 120 69 3 154 271 134 248 2.42e-16 79.0
Msa1177650 MtrunA17_Chr7g0216891 39.560 91 52 1 133 223 202 289 2.57e-16 79.7
Msa1177650 MtrunA17_Chr7g0275531 35.965 114 63 3 100 209 69 176 2.61e-16 78.6
Msa1177650 MtrunA17_Chr2g0322391 49.206 63 32 0 151 213 347 409 3.79e-16 79.3
Msa1177650 MtrunA17_Chr4g0068541 49.180 61 30 1 154 214 209 268 4.47e-16 78.6
Msa1177650 MtrunA17_Chr5g0445311 49.231 65 32 1 154 218 365 428 5.97e-16 78.6
Msa1177650 MtrunA17_Chr5g0445311 32.215 149 81 7 152 290 199 337 4.58e-11 63.9
Msa1177650 MtrunA17_Chr8g0387981 41.860 86 42 2 132 209 105 190 7.75e-16 77.4
Msa1177650 MtrunA17_Chr4g0025061 41.176 85 46 2 142 223 347 430 1.37e-15 77.8
Msa1177650 MtrunA17_Chr7g0249311 38.462 91 51 3 129 218 370 456 1.49e-15 77.8
Msa1177650 MtrunA17_Chr7g0249311 44.000 75 40 2 139 213 165 237 5.05e-13 70.1
Msa1177650 MtrunA17_Chr4g0074001 38.318 107 59 3 113 217 323 424 1.71e-15 77.4
Msa1177650 MtrunA17_Chr7g0224801 47.541 61 31 1 151 211 91 150 2.00e-15 73.2
Msa1177650 MtrunA17_Chr3g0129321 45.455 66 35 1 150 215 115 179 2.10e-15 73.9
Msa1177650 MtrunA17_Chr1g0189391 45.833 96 41 6 140 225 83 177 2.75e-15 75.9
Msa1177650 MtrunA17_Chr8g0383251 48.438 64 32 1 150 213 105 167 2.80e-15 73.2
Msa1177650 MtrunA17_Chr6g0485431 47.887 71 34 3 144 213 146 214 3.98e-15 75.5
Msa1177650 MtrunA17_Chr5g0447701 49.275 69 34 1 151 219 250 317 4.19e-15 75.5
Msa1177650 MtrunA17_Chr1g0150281 47.368 57 30 0 154 210 141 197 5.99e-15 73.9
Msa1177650 MtrunA17_Chr4g0060271 50.820 61 30 0 153 213 255 315 6.98e-15 75.5
Msa1177650 MtrunA17_Chr3g0136961 32.704 159 88 4 68 210 40 195 7.00e-15 73.9
Msa1177650 MtrunA17_Chr7g0249301 42.353 85 44 3 135 216 272 354 8.13e-15 74.7
Msa1177650 MtrunA17_Chr7g0249301 40.789 76 43 2 139 214 48 121 6.48e-13 68.9
Msa1177650 MtrunA17_Chr3g0079691 38.614 101 46 3 133 218 460 559 8.44e-15 75.5
Msa1177650 MtrunA17_Chr3g0079691 45.455 88 40 4 152 238 279 359 1.12e-12 68.9
Msa1177650 MtrunA17_Chr1g0150271 47.619 63 33 0 151 213 99 161 1.08e-14 72.8
Msa1177650 MtrunA17_Chr4g0004911 49.206 63 31 1 154 216 337 398 1.19e-14 74.7
Msa1177650 MtrunA17_Chr4g0004911 44.776 67 36 1 147 213 178 243 9.90e-13 68.9
Msa1177650 MtrunA17_Chr8g0383351 52.632 57 26 1 154 210 161 216 1.23e-14 72.4
Msa1177650 MtrunA17_Chr3g0106491 46.154 78 40 2 154 231 366 441 1.47e-14 74.3
Msa1177650 MtrunA17_Chr3g0106491 46.154 65 33 2 150 214 195 257 4.26e-11 63.9
Msa1177650 MtrunA17_Chr7g0243891 41.860 86 40 2 154 230 375 459 1.49e-14 74.3
Msa1177650 MtrunA17_Chr7g0243891 37.241 145 80 6 146 285 209 347 1.65e-13 71.2
Msa1177650 MtrunA17_Chr3g0129361 52.632 57 26 1 154 210 145 200 1.82e-14 71.6
Msa1177650 MtrunA17_Chr8g0335811 43.590 78 41 3 135 210 134 210 4.14e-14 70.9
Msa1177650 MtrunA17_Chr7g0244981 44.872 78 39 2 134 209 105 180 7.03e-14 70.9
Msa1177650 MtrunA17_Chr8g0347251 33.108 148 89 4 148 285 131 278 1.79e-13 70.5
Msa1177650 MtrunA17_Chr5g0432161 36.111 108 54 2 154 247 422 528 2.74e-13 70.9
Msa1177650 MtrunA17_Chr3g0128671 39.286 84 46 2 134 215 111 191 4.40e-13 68.9
Msa1177650 MtrunA17_Chr4g0024391 41.333 75 44 0 149 223 225 299 5.90e-13 69.3
Msa1177650 MtrunA17_Chr1g0188941 47.541 61 31 1 154 214 52 111 6.03e-13 64.7
Msa1177650 MtrunA17_Chr8g0386241 36.842 76 46 2 138 212 87 161 8.80e-13 65.9
Msa1177650 MtrunA17_Chr8g0334541 42.308 78 41 2 134 209 86 161 2.21e-12 66.6
Msa1177650 MtrunA17_Chr5g0428351 50.909 55 25 1 157 209 187 241 3.69e-12 66.2
Msa1177650 MtrunA17_Chr7g0244971 39.744 78 43 2 134 209 106 181 6.68e-12 65.5
Msa1177650 MtrunA17_Chr2g0315361 42.466 73 40 1 145 215 140 212 5.54e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177650 AT4G01250.1 46.273 322 125 9 1 315 1 281 1.66e-76 237
Msa1177650 AT5G52830.1 56.863 153 51 4 132 281 143 283 3.77e-49 168
Msa1177650 AT1G30650.1 46.047 215 84 7 134 322 188 396 7.95e-44 156
Msa1177650 AT2G34830.1 45.320 203 81 4 134 306 186 388 8.88e-42 150
Msa1177650 AT2G34830.2 45.320 203 81 4 134 306 195 397 9.52e-42 150
Msa1177650 AT4G23550.1 43.590 234 98 7 6 231 11 218 1.39e-41 147
Msa1177650 AT5G45050.1 61.290 93 33 1 132 221 1156 1248 2.77e-33 130
Msa1177650 AT5G45050.2 61.290 93 33 1 132 221 1128 1220 3.09e-33 130
Msa1177650 AT5G45050.4 61.290 93 33 1 132 221 1017 1109 3.35e-33 130
Msa1177650 AT1G29280.1 50.427 117 41 3 120 225 31 141 1.61e-32 122
Msa1177650 AT3G58710.1 50.435 115 39 3 130 226 38 152 3.60e-30 116
Msa1177650 AT3G58710.2 51.304 115 37 4 130 226 38 151 2.37e-29 114
Msa1177650 AT2G23320.1 45.312 128 63 3 88 210 172 297 1.43e-26 107
Msa1177650 AT2G30590.1 54.762 84 33 1 133 211 288 371 1.08e-24 103
Msa1177650 AT4G31550.2 54.878 82 32 1 134 210 221 302 1.30e-24 102
Msa1177650 AT4G24240.1 56.627 83 31 1 133 210 256 338 1.34e-24 102
Msa1177650 AT4G31550.1 54.878 82 32 1 134 210 222 303 4.24e-24 100
Msa1177650 AT5G28650.1 55.422 83 32 1 133 210 237 319 1.16e-23 99.8
Msa1177650 AT3G04670.1 55.422 83 32 1 133 210 237 319 1.37e-23 99.8
Msa1177650 AT5G45260.1 53.488 86 37 2 141 224 1197 1281 1.94e-23 102
Msa1177650 AT2G24570.1 53.659 82 33 1 134 210 219 300 1.97e-22 96.3
Msa1177650 AT1G29860.1 56.522 69 28 2 154 221 137 204 8.26e-20 88.2
Msa1177650 AT5G46350.1 52.778 72 31 2 154 223 184 254 1.10e-19 88.6
Msa1177650 AT4G18170.1 58.065 62 25 1 154 215 173 233 1.47e-19 88.2
Msa1177650 AT3G62340.1 53.012 83 33 3 136 213 96 177 3.59e-19 86.3
Msa1177650 AT5G49520.1 58.333 60 24 1 154 213 222 280 4.12e-19 87.8
Msa1177650 AT2G04880.2 54.054 74 28 2 151 219 281 353 6.90e-19 87.8
Msa1177650 AT2G04880.2 46.667 75 33 3 149 223 107 174 1.54e-12 68.6
Msa1177650 AT2G04880.1 54.054 74 28 2 151 219 305 377 7.15e-19 87.8
Msa1177650 AT2G04880.1 46.667 75 33 3 149 223 107 174 1.46e-12 68.6
Msa1177650 AT4G04450.2 41.176 102 55 2 122 223 172 268 2.99e-18 85.5
Msa1177650 AT4G04450.1 34.194 155 89 3 82 223 208 362 3.70e-18 85.9
Msa1177650 AT1G62300.1 53.968 63 29 0 151 213 310 372 5.44e-18 85.1
Msa1177650 AT4G22070.4 53.968 63 29 0 151 213 295 357 6.57e-18 85.1
Msa1177650 AT4G22070.3 53.968 63 29 0 151 213 295 357 6.57e-18 85.1
Msa1177650 AT4G22070.2 53.968 63 29 0 151 213 295 357 6.57e-18 85.1
Msa1177650 AT4G22070.1 53.968 63 29 0 151 213 295 357 6.57e-18 85.1
Msa1177650 AT1G68150.1 46.053 76 41 0 153 228 235 310 1.46e-17 83.2
Msa1177650 AT1G69310.4 57.895 57 23 1 154 210 148 203 1.59e-17 82.0
Msa1177650 AT1G69310.2 57.895 57 23 1 154 210 148 203 1.59e-17 82.0
Msa1177650 AT1G69310.1 57.895 57 23 1 154 210 148 203 1.59e-17 82.0
Msa1177650 AT1G80840.1 45.070 71 39 0 154 224 147 217 3.34e-17 81.3
Msa1177650 AT2G21900.1 50.820 61 29 1 154 214 110 169 3.78e-17 79.3
Msa1177650 AT5G15130.2 42.222 90 49 1 134 223 169 255 5.15e-17 82.4
Msa1177650 AT5G15130.1 42.222 90 49 1 134 223 211 297 5.69e-17 82.0
Msa1177650 AT5G26170.1 47.297 74 35 2 137 210 100 169 5.82e-17 77.8
Msa1177650 AT4G39410.1 42.424 99 52 3 135 229 203 300 8.99e-17 80.1
Msa1177650 AT1G13960.2 50.794 63 30 1 151 213 254 315 9.58e-17 80.5
Msa1177650 AT1G13960.2 42.105 76 42 2 138 213 61 134 3.17e-13 70.1
Msa1177650 AT2G47260.1 53.333 60 27 1 154 213 175 233 1.55e-16 79.7
Msa1177650 AT2G03340.1 48.529 68 34 1 151 218 413 479 1.76e-16 80.5
Msa1177650 AT2G03340.1 33.333 135 78 3 148 272 245 377 1.11e-13 72.0
Msa1177650 AT1G13960.1 50.794 63 30 1 151 213 407 468 1.97e-16 80.5
Msa1177650 AT1G13960.1 42.105 76 42 2 138 213 214 287 2.35e-13 71.2
Msa1177650 AT4G01720.1 50.820 61 30 0 153 213 239 299 5.79e-16 79.0
Msa1177650 AT2G25000.2 50.000 60 30 0 154 213 104 163 6.56e-16 76.3
Msa1177650 AT2G25000.4 50.000 60 30 0 154 213 104 163 6.56e-16 76.3
Msa1177650 AT1G18860.1 43.750 80 42 1 134 213 223 299 1.13e-15 78.2
Msa1177650 AT4G31800.2 48.333 60 31 0 154 213 112 171 1.15e-15 75.9
Msa1177650 AT2G25000.3 50.000 60 30 0 154 213 126 185 1.16e-15 75.9
Msa1177650 AT4G26640.5 31.098 164 98 4 55 218 121 269 1.35e-15 77.4
Msa1177650 AT4G26640.5 41.250 80 43 3 151 228 33 110 9.03e-11 62.8
Msa1177650 AT4G26640.6 31.098 164 98 4 55 218 121 269 1.35e-15 77.4
Msa1177650 AT4G26640.6 41.250 80 43 3 151 228 33 110 9.03e-11 62.8
Msa1177650 AT4G26640.4 31.098 164 98 4 55 218 121 269 1.35e-15 77.4
Msa1177650 AT4G26640.4 41.250 80 43 3 151 228 33 110 9.03e-11 62.8
Msa1177650 AT4G26640.3 31.098 164 98 4 55 218 121 269 1.35e-15 77.4
Msa1177650 AT4G26640.3 41.250 80 43 3 151 228 33 110 9.03e-11 62.8
Msa1177650 AT1G69810.1 47.222 72 37 1 153 223 203 274 1.36e-15 77.4
Msa1177650 AT2G37260.1 48.837 86 34 4 132 210 323 405 1.43e-15 77.8
Msa1177650 AT2G37260.1 42.424 99 48 4 148 241 160 254 6.28e-11 63.5
Msa1177650 AT2G37260.3 48.837 86 34 4 132 210 243 325 1.61e-15 77.0
Msa1177650 AT2G37260.3 42.424 99 48 4 148 241 80 174 9.02e-11 62.8
Msa1177650 AT2G37260.2 48.837 86 34 4 132 210 241 323 1.66e-15 77.0
Msa1177650 AT2G37260.2 42.424 99 48 4 148 241 78 172 9.28e-11 62.8
Msa1177650 AT4G31800.1 48.333 60 31 0 154 213 177 236 1.70e-15 76.6
Msa1177650 AT2G25000.1 50.000 60 30 0 154 213 147 206 1.83e-15 75.9
Msa1177650 AT4G26640.2 40.426 94 55 1 125 218 353 445 2.06e-15 77.4
Msa1177650 AT4G26640.7 40.426 94 55 1 125 218 313 405 2.09e-15 77.4
Msa1177650 AT1G69810.2 47.222 72 37 1 153 223 145 216 2.12e-15 76.3
Msa1177650 AT4G26640.1 40.426 94 55 1 125 218 281 373 2.43e-15 77.0
Msa1177650 AT2G40740.1 44.681 94 43 3 125 209 138 231 2.52e-15 75.9
Msa1177650 AT1G64000.1 44.444 72 39 1 154 225 115 185 2.55e-15 73.9
Msa1177650 AT4G26440.1 47.619 84 38 3 154 232 373 455 2.95e-15 77.0
Msa1177650 AT4G26440.1 46.575 73 35 3 152 222 177 247 4.98e-13 70.5
Msa1177650 AT2G40740.3 44.681 94 43 3 125 209 147 240 3.00e-15 75.5
Msa1177650 AT5G07100.2 50.000 66 32 1 151 216 139 203 3.04e-15 74.3
Msa1177650 AT5G07100.2 43.939 66 36 1 148 213 19 83 5.44e-11 62.0
Msa1177650 AT5G07100.4 50.000 66 32 1 151 216 139 203 3.04e-15 74.3
Msa1177650 AT5G07100.4 43.939 66 36 1 148 213 19 83 5.44e-11 62.0
Msa1177650 AT5G07100.5 50.000 66 32 1 151 216 139 203 3.04e-15 74.3
Msa1177650 AT5G07100.5 43.939 66 36 1 148 213 19 83 5.44e-11 62.0
Msa1177650 AT5G07100.3 50.000 66 32 1 151 216 139 203 3.04e-15 74.3
Msa1177650 AT5G07100.3 43.939 66 36 1 148 213 19 83 5.44e-11 62.0
Msa1177650 AT4G11070.2 44.706 85 39 2 133 209 83 167 3.46e-15 75.1
Msa1177650 AT5G13080.1 49.180 61 30 1 151 211 65 124 3.74e-15 72.0
Msa1177650 AT4G11070.1 44.706 85 39 2 133 209 115 199 4.41e-15 75.1
Msa1177650 AT1G66600.1 30.172 232 107 10 87 300 33 227 4.65e-15 73.9
Msa1177650 AT2G38470.1 39.423 104 52 3 154 247 363 465 5.10e-15 76.3
Msa1177650 AT5G07100.1 50.000 66 32 1 151 216 232 296 5.44e-15 75.1
Msa1177650 AT5G07100.1 42.647 68 38 1 146 213 110 176 7.86e-11 62.8
Msa1177650 AT1G80590.1 29.341 167 107 3 117 272 40 206 6.20e-15 73.6
Msa1177650 AT4G30935.1 34.532 139 69 5 151 270 329 464 8.23e-15 75.5
Msa1177650 AT3G01080.2 42.105 95 42 4 131 213 310 403 8.83e-15 75.5
Msa1177650 AT3G01080.2 46.575 73 37 2 149 221 201 271 1.05e-13 72.0
Msa1177650 AT3G01080.1 42.105 95 42 4 131 213 272 365 1.21e-14 74.7
Msa1177650 AT3G01080.1 46.575 73 37 2 149 221 163 233 1.02e-13 72.0
Msa1177650 AT3G01970.1 46.667 60 31 1 151 210 63 121 1.71e-14 70.5
Msa1177650 AT5G41570.1 44.444 72 39 1 154 225 99 169 1.79e-14 71.2
Msa1177650 AT2G40750.1 42.500 80 41 2 135 212 137 213 2.28e-14 73.6
Msa1177650 AT2G44745.1 43.590 78 41 3 135 210 125 201 2.61e-14 71.6
Msa1177650 AT1G66560.1 28.837 215 118 7 87 290 33 223 4.07e-14 71.6
Msa1177650 AT5G56270.1 49.206 63 31 1 154 216 488 549 4.13e-14 73.6
Msa1177650 AT5G56270.1 45.588 68 33 3 154 219 274 339 2.76e-11 65.1
Msa1177650 AT4G23810.1 42.105 95 46 3 123 209 123 216 4.24e-14 72.4
Msa1177650 AT5G43290.1 48.052 77 37 2 151 227 112 185 5.67e-14 71.6
Msa1177650 AT2G46130.1 50.847 59 28 1 154 212 31 88 5.72e-14 67.8
Msa1177650 AT3G01080.3 46.575 73 37 2 149 221 201 271 7.44e-14 71.6
Msa1177650 AT1G55600.1 45.902 61 32 1 153 213 307 366 8.37e-14 72.4
Msa1177650 AT3G56400.1 41.026 78 41 3 134 209 104 178 1.01e-13 71.2
Msa1177650 AT2G30250.1 50.820 61 29 1 154 214 329 388 1.04e-13 72.0
Msa1177650 AT2G46400.1 53.704 54 23 1 158 209 109 162 2.42e-13 70.1
Msa1177650 AT5G64810.1 49.153 59 29 1 154 212 111 168 3.74e-13 67.8
Msa1177650 AT1G66550.1 35.507 138 68 5 87 208 33 165 4.40e-13 68.6
Msa1177650 AT1G69310.3 52.632 57 22 2 154 210 148 199 7.82e-13 68.2
Msa1177650 AT5G24110.1 50.000 58 27 1 154 209 114 171 1.01e-12 68.2
Msa1177650 AT1G66550.2 31.792 173 85 6 87 236 33 195 8.34e-12 64.7
Msa1177650 AT5G01900.1 46.667 60 30 1 151 208 108 167 1.14e-11 64.7

Find 87 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGTCTCCACTAATTT+TGG 0.187343 8_1:-10027198 Msa1177650:three_prime_UTR
GACCTTGTCTTTAACGGTTA+TGG 0.227776 8_1:-10029081 Msa1177650:exon
TTAGAGGAATTGGTACATTA+TGG 0.247413 8_1:-10027084 Msa1177650:three_prime_UTR
GGTTGTATGTGAGGTGATTT+TGG 0.253557 8_1:+10028747 None:intergenic
TGAATTTGAGTTATCTGATA+TGG 0.292666 8_1:-10027534 Msa1177650:CDS
GTCAGAGAGCAAAGATGATT+TGG 0.293031 8_1:-10027588 Msa1177650:CDS
TCTAATCCCTATTCTCTATA+AGG 0.299926 8_1:+10027145 None:intergenic
CTTTCAGACCTTGTCTTTAA+CGG 0.308252 8_1:-10029087 Msa1177650:five_prime_UTR
GGATCGTGTTGGTGCTTTAT+TGG 0.324244 8_1:+10027366 None:intergenic
TTATTAACCAGAAGCTGTTT+TGG 0.328825 8_1:+10028726 None:intergenic
CATACAACCAAAACAGCTTC+TGG 0.352693 8_1:-10028733 Msa1177650:CDS
TTTGTACATTACCAAAAGTA+TGG 0.353893 8_1:+10026945 None:intergenic
GGTTGTTGAGGTGGTGGAGG+AGG 0.354712 8_1:+10028995 None:intergenic
GTGATTGATAGCCATACTTT+TGG 0.355960 8_1:-10026956 Msa1177650:three_prime_UTR
TAACGGTTATGGAGGTAGAT+TGG 0.366756 8_1:-10029070 Msa1177650:exon
TCATCTGGTGGTGACTGTTT+TGG 0.371167 8_1:-10027446 Msa1177650:CDS
GGTGGAGGAGGAGGAAGAGG+AGG 0.375401 8_1:+10029007 None:intergenic
ACTCACAGAAATTCTCTTGC+TGG 0.378623 8_1:-10027746 Msa1177650:CDS
GGTGGTGGAGGAGGAGGAAG+AGG 0.383063 8_1:+10029004 None:intergenic
ATATGGGCATGGAGGAAATA+TGG 0.384293 8_1:-10028349 Msa1177650:CDS
GGAAGAGGAGGAGGTGAGGT+TGG 0.390083 8_1:+10029019 None:intergenic
TGTTGAGGTGGTGGAGGAGG+AGG 0.393969 8_1:+10028998 None:intergenic
GGATATGGTGAGCCTTTGAT+TGG 0.398953 8_1:+10028319 None:intergenic
AACGGTTATGGAGGTAGATT+GGG 0.399198 8_1:-10029069 Msa1177650:exon
GGTGGTTGTTGAGGTGGTGG+AGG 0.404929 8_1:+10028992 None:intergenic
GGAGGAGGAGGAAGAGGAGG+AGG 0.406513 8_1:+10029010 None:intergenic
ACTTGACTTGTTTGTTCTGT+AGG 0.409675 8_1:+10028906 None:intergenic
AGAAGCTCTCATCAGACATA+TGG 0.410207 8_1:-10028366 Msa1177650:CDS
TTTATTGGTGGCAACATCAT+TGG 0.410233 8_1:+10027381 None:intergenic
GTAACAGATGATTTCTTTGA+AGG 0.418155 8_1:-10027509 Msa1177650:CDS
AGAGCAATACTAGCAGCAAA+AGG 0.441287 8_1:+10027419 None:intergenic
GGCTAAGGTGGTTGTTGAGG+TGG 0.445368 8_1:+10028986 None:intergenic
GAATTTCTGTGAGTTGGAGC+AGG 0.445905 8_1:+10027755 None:intergenic
AAGTTCATGCAATTCTTCAA+TGG 0.450245 8_1:+10028848 None:intergenic
TCTTCAGCAGTGTCAGTTTG+TGG 0.454123 8_1:+10027698 None:intergenic
GCAAGAGAATTTCTGTGAGT+TGG 0.458253 8_1:+10027749 None:intergenic
AGGAGGAAGAGGAGGAGGTG+AGG 0.460777 8_1:+10029015 None:intergenic
CTTGACTTGTTTGTTCTGTA+GGG 0.462771 8_1:+10028907 None:intergenic
GATGATGATTTGAATAAGAA+AGG 0.465082 8_1:+10028819 None:intergenic
TCAGCTACCACCAAAATTAG+TGG 0.476180 8_1:+10027188 None:intergenic
GAGAGAGATAGAGAGAAAAG+AGG 0.482478 8_1:+10029142 None:intergenic
TTACTATAAGATGTTGAAGA+AGG 0.482849 8_1:+10028951 None:intergenic
TACAGATGTAGCAGTTCAAA+AGG 0.483623 8_1:-10027860 Msa1177650:CDS
GAAGGTTTAGATGAATTGAC+AGG 0.487690 8_1:-10027491 Msa1177650:CDS
TAGGAAGATTCAGCATAAGA+AGG 0.490182 8_1:-10028407 Msa1177650:CDS
TAAGGTGGTTGTTGAGGTGG+TGG 0.491931 8_1:+10028989 None:intergenic
ACAATTTCAATTTAAAGTGT+CGG 0.492795 8_1:-10027225 Msa1177650:three_prime_UTR
TTCCTCTTCAGCTTCTGATG+TGG 0.499055 8_1:+10027637 None:intergenic
GGTGGCTAAGGTGGTTGTTG+AGG 0.500842 8_1:+10028983 None:intergenic
AACTAACAATGCTATGTGAA+GGG 0.504246 8_1:-10027052 Msa1177650:three_prime_UTR
ATCAGAAGCTGAAGAGGAAG+AGG 0.515216 8_1:-10027633 Msa1177650:CDS
TATGTAACTATGAACATTGA+TGG 0.516786 8_1:+10027797 None:intergenic
TCAGTGTCCTGTCAGACATA+AGG 0.518379 8_1:+10027345 None:intergenic
GAGAAGGAAGTTGAAGAGAG+AGG 0.518420 8_1:+10028786 None:intergenic
AGTATTGCTCTTCCTGCTTG+TGG 0.519938 8_1:-10027407 Msa1177650:CDS
GAAGCTCTCATCAGACATAT+GGG 0.541248 8_1:-10028365 Msa1177650:CDS
ATCCACATCAGAAGCTGAAG+AGG 0.543617 8_1:-10027639 Msa1177650:CDS
TGTTGATGAGGTGGCTAAGG+TGG 0.549800 8_1:+10028974 None:intergenic
TAACTAACAATGCTATGTGA+AGG 0.552278 8_1:-10027053 Msa1177650:three_prime_UTR
AGGTGTTGATGAGGTGGCTA+AGG 0.558620 8_1:+10028971 None:intergenic
TCGTGTTGGTGCTTTATTGG+TGG 0.561734 8_1:+10027369 None:intergenic
ACACGATCCTTATGTCTGAC+AGG 0.564606 8_1:-10027352 Msa1177650:three_prime_UTR
CTCCATAACCGTTAAAGACA+AGG 0.576458 8_1:+10029079 None:intergenic
GAGCAATACTAGCAGCAAAA+GGG 0.577414 8_1:+10027420 None:intergenic
ATTGCTCTTCCTGCTTGTGG+TGG 0.580832 8_1:-10027404 Msa1177650:CDS
GAGGAATTGGTACATTATGG+AGG 0.585375 8_1:-10027081 Msa1177650:three_prime_UTR
TCACACCAAGATCCAAAAGA+AGG 0.586020 8_1:-10028677 Msa1177650:intron
CATCATTGGCCACCACAAGC+AGG 0.589284 8_1:+10027395 None:intergenic
CTTGTCTTTAACGGTTATGG+AGG 0.592755 8_1:-10029078 Msa1177650:exon
AGAGAGATAGAGAGAAAAGA+GGG 0.593790 8_1:+10029143 None:intergenic
AATTTCTGTGAGTTGGAGCA+GGG 0.599997 8_1:+10027756 None:intergenic
ACTAACAATGCTATGTGAAG+GGG 0.600258 8_1:-10027051 Msa1177650:three_prime_UTR
AATGATGAATGATGATGATG+AGG 0.613568 8_1:-10027561 Msa1177650:CDS
GATCTACATGCTGTAGTCAG+AGG 0.619206 8_1:-10029047 Msa1177650:CDS
GTGTCAGTTTGTGGTGACAA+TGG 0.619638 8_1:+10027707 None:intergenic
TCAAAGGCTCACCATATCCA+AGG 0.623779 8_1:-10028315 Msa1177650:intron
ATGTAACTATGAACATTGAT+GGG 0.626118 8_1:+10027798 None:intergenic
ATGTTCATAGTTACATACAC+TGG 0.626605 8_1:-10027791 Msa1177650:CDS
CAGCTAAGAAACAAGTTGAG+AGG 0.631582 8_1:-10027832 Msa1177650:CDS
GTCAGACATAAGGATCGTGT+TGG 0.640474 8_1:+10027355 None:intergenic
TGAAGAAGGTGTTGATGAGG+TGG 0.640780 8_1:+10028965 None:intergenic
GCTATGTGTCAGTGTCGTGT+CGG 0.659359 8_1:-10027273 Msa1177650:three_prime_UTR
TCTCATCAGACATATGGGCA+TGG 0.674402 8_1:-10028360 Msa1177650:CDS
CATCAGACATATGGGCATGG+AGG 0.678030 8_1:-10028357 Msa1177650:CDS
TGTTGAAGAAGGTGTTGATG+AGG 0.693091 8_1:+10028962 None:intergenic
TGATGGTGATGAATAAGAGA+AGG 0.705900 8_1:+10028770 None:intergenic
AAAACAGTAGCATCATCTGG+TGG 0.715149 8_1:-10027458 Msa1177650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATATTGTATATATAA+TGG + chr8_1:10027484-10027503 None:intergenic 10.0%
!!! TCAATAAAAATCATATATTT+TGG - chr8_1:10027539-10027558 Msa1177650:CDS 10.0%
!!! AAAATCATTTTTCTTTAAAT+GGG + chr8_1:10027909-10027928 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_1:10028191-10028210 Msa1177650:intron 10.0%
!! ATTCTATATTGTATATATAA+TGG + chr8_1:10027484-10027503 None:intergenic 10.0%
!!! TCAATAAAAATCATATATTT+TGG - chr8_1:10027539-10027558 Msa1177650:CDS 10.0%
!!! AAAATCATTTTTCTTTAAAT+GGG + chr8_1:10027909-10027928 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_1:10028191-10028210 Msa1177650:intron 10.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_1:10027636-10027655 None:intergenic 15.0%
!!! AAATTTTTAAAAACTAACCT+TGG + chr8_1:10027813-10027832 None:intergenic 15.0%
!!! TAAATTTGCAAAATACTTTT+GGG + chr8_1:10027852-10027871 None:intergenic 15.0%
!!! TTAAATTTGCAAAATACTTT+TGG + chr8_1:10027853-10027872 None:intergenic 15.0%
!! TTTGCAAATTTAAAGAAAAA+TGG - chr8_1:10027860-10027879 Msa1177650:CDS 15.0%
!!! GAAAATCATTTTTCTTTAAA+TGG + chr8_1:10027910-10027929 None:intergenic 15.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_1:10027636-10027655 None:intergenic 15.0%
!!! AAATTTTTAAAAACTAACCT+TGG + chr8_1:10027813-10027832 None:intergenic 15.0%
!!! TAAATTTGCAAAATACTTTT+GGG + chr8_1:10027852-10027871 None:intergenic 15.0%
!!! TTAAATTTGCAAAATACTTT+TGG + chr8_1:10027853-10027872 None:intergenic 15.0%
!! TTTGCAAATTTAAAGAAAAA+TGG - chr8_1:10027860-10027879 Msa1177650:CDS 15.0%
!!! GAAAATCATTTTTCTTTAAA+TGG + chr8_1:10027910-10027929 None:intergenic 15.0%
!!! GACTTAAATTTTCCATATTT+AGG - chr8_1:10027569-10027588 Msa1177650:CDS 20.0%
!! AATTTGCATAATCCTAAATA+TGG + chr8_1:10027584-10027603 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_1:10027652-10027671 Msa1177650:CDS 20.0%
!!! AAATTTGCAAAATACTTTTG+GGG + chr8_1:10027851-10027870 None:intergenic 20.0%
!! TCAAATAAGTCGATATAAAT+AGG + chr8_1:10027957-10027976 None:intergenic 20.0%
!! ATGTAAGACATATCAATAAA+CGG - chr8_1:10028017-10028036 Msa1177650:intron 20.0%
!!! CTTATTTTCATAAGTTCTTT+AGG - chr8_1:10028047-10028066 Msa1177650:intron 20.0%
!!! ACAATTTCAATTTAAAGTGT+CGG - chr8_1:10028883-10028902 Msa1177650:CDS 20.0%
!!! TTTCTTGTTTTTGTTTTTTG+AGG - chr8_1:10029001-10029020 Msa1177650:CDS 20.0%
!!! GACTTAAATTTTCCATATTT+AGG - chr8_1:10027569-10027588 Msa1177650:CDS 20.0%
!! AATTTGCATAATCCTAAATA+TGG + chr8_1:10027584-10027603 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_1:10027652-10027671 Msa1177650:CDS 20.0%
!!! AAATTTGCAAAATACTTTTG+GGG + chr8_1:10027851-10027870 None:intergenic 20.0%
!! TCAAATAAGTCGATATAAAT+AGG + chr8_1:10027957-10027976 None:intergenic 20.0%
!! ATGTAAGACATATCAATAAA+CGG - chr8_1:10028017-10028036 Msa1177650:intron 20.0%
!!! CTTATTTTCATAAGTTCTTT+AGG - chr8_1:10028047-10028066 Msa1177650:intron 20.0%
!!! ACAATTTCAATTTAAAGTGT+CGG - chr8_1:10028883-10028902 Msa1177650:CDS 20.0%
!!! TTTCTTGTTTTTGTTTTTTG+AGG - chr8_1:10029001-10029020 Msa1177650:CDS 20.0%
! TTACTATAAGATGTTGAAGA+AGG + chr8_1:10027160-10027179 None:intergenic 25.0%
!!! ATGGAACTTTTAGTTTCAAA+GGG + chr8_1:10027244-10027263 None:intergenic 25.0%
!!! AATGGAACTTTTAGTTTCAA+AGG + chr8_1:10027245-10027264 None:intergenic 25.0%
! GATGATGATTTGAATAAGAA+AGG + chr8_1:10027292-10027311 None:intergenic 25.0%
!!! AACTCTTTTTTACCTTCTTT+TGG + chr8_1:10027446-10027465 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_1:10027682-10027701 Msa1177650:CDS 25.0%
! TTAAAAACTAACCTTGGATA+TGG + chr8_1:10027807-10027826 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_1:10028313-10028332 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_1:10028314-10028333 None:intergenic 25.0%
!!! TTGTTTTGTAAAAGGTTGTT+GGG + chr8_1:10028441-10028460 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+AGG + chr8_1:10028449-10028468 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_1:10028574-10028593 Msa1177650:intron 25.0%
!!! TTTTTGTTTTTTGAGGTTAG+AGG - chr8_1:10029008-10029027 Msa1177650:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_1:10029166-10029185 None:intergenic 25.0%
! TTACTATAAGATGTTGAAGA+AGG + chr8_1:10027160-10027179 None:intergenic 25.0%
!!! ATGGAACTTTTAGTTTCAAA+GGG + chr8_1:10027244-10027263 None:intergenic 25.0%
!!! AATGGAACTTTTAGTTTCAA+AGG + chr8_1:10027245-10027264 None:intergenic 25.0%
! GATGATGATTTGAATAAGAA+AGG + chr8_1:10027292-10027311 None:intergenic 25.0%
!!! AACTCTTTTTTACCTTCTTT+TGG + chr8_1:10027446-10027465 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_1:10027682-10027701 Msa1177650:CDS 25.0%
! TTAAAAACTAACCTTGGATA+TGG + chr8_1:10027807-10027826 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_1:10028313-10028332 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_1:10028314-10028333 None:intergenic 25.0%
!!! TTGTTTTGTAAAAGGTTGTT+GGG + chr8_1:10028441-10028460 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+AGG + chr8_1:10028449-10028468 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_1:10028574-10028593 Msa1177650:intron 25.0%
!!! TTTTTGTTTTTTGAGGTTAG+AGG - chr8_1:10029008-10029027 Msa1177650:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_1:10029166-10029185 None:intergenic 25.0%
!!! TGGAACTTTTAGTTTCAAAG+GGG + chr8_1:10027243-10027262 None:intergenic 30.0%
AAGTTCATGCAATTCTTCAA+TGG + chr8_1:10027263-10027282 None:intergenic 30.0%
! TTATTAACCAGAAGCTGTTT+TGG + chr8_1:10027385-10027404 None:intergenic 30.0%
! TTTTACCTTCTTTTGGATCT+TGG + chr8_1:10027439-10027458 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_1:10027777-10027796 Msa1177650:CDS 30.0%
! TATTTTCCGAAACCAACTTA+CGG - chr8_1:10028110-10028129 Msa1177650:intron 30.0%
! TTTTCATATGAACCGTAAGT+TGG + chr8_1:10028125-10028144 None:intergenic 30.0%
! CAAACTTTGTTTGATTCACA+GGG - chr8_1:10028220-10028239 Msa1177650:intron 30.0%
! AAACTTTGTTTGATTCACAG+GGG - chr8_1:10028221-10028240 Msa1177650:intron 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_1:10028317-10028336 Msa1177650:CDS 30.0%
!!! CTTGTTTTGTAAAAGGTTGT+TGG + chr8_1:10028442-10028461 None:intergenic 30.0%
! AATGATGAATGATGATGATG+AGG - chr8_1:10028547-10028566 Msa1177650:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_1:10028599-10028618 Msa1177650:intron 30.0%
! AGATATGTCTCCACTAATTT+TGG - chr8_1:10028910-10028929 Msa1177650:CDS 30.0%
! AGCTTTTCCTTATAGAGAAT+AGG - chr8_1:10028956-10028975 Msa1177650:CDS 30.0%
! GCTTTTCCTTATAGAGAATA+GGG - chr8_1:10028957-10028976 Msa1177650:CDS 30.0%
TCTAATCCCTATTCTCTATA+AGG + chr8_1:10028966-10028985 None:intergenic 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_1:10029014-10029033 Msa1177650:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_1:10029024-10029043 Msa1177650:CDS 30.0%
TAACTAACAATGCTATGTGA+AGG - chr8_1:10029055-10029074 Msa1177650:CDS 30.0%
AACTAACAATGCTATGTGAA+GGG - chr8_1:10029056-10029075 Msa1177650:CDS 30.0%
!!! TGGAACTTTTAGTTTCAAAG+GGG + chr8_1:10027243-10027262 None:intergenic 30.0%
AAGTTCATGCAATTCTTCAA+TGG + chr8_1:10027263-10027282 None:intergenic 30.0%
! TTATTAACCAGAAGCTGTTT+TGG + chr8_1:10027385-10027404 None:intergenic 30.0%
! TTTTACCTTCTTTTGGATCT+TGG + chr8_1:10027439-10027458 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_1:10027777-10027796 Msa1177650:CDS 30.0%
! TATTTTCCGAAACCAACTTA+CGG - chr8_1:10028110-10028129 Msa1177650:intron 30.0%
! TTTTCATATGAACCGTAAGT+TGG + chr8_1:10028125-10028144 None:intergenic 30.0%
! CAAACTTTGTTTGATTCACA+GGG - chr8_1:10028220-10028239 Msa1177650:intron 30.0%
! AAACTTTGTTTGATTCACAG+GGG - chr8_1:10028221-10028240 Msa1177650:intron 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_1:10028317-10028336 Msa1177650:CDS 30.0%
!!! CTTGTTTTGTAAAAGGTTGT+TGG + chr8_1:10028442-10028461 None:intergenic 30.0%
! AATGATGAATGATGATGATG+AGG - chr8_1:10028547-10028566 Msa1177650:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_1:10028599-10028618 Msa1177650:intron 30.0%
! AGATATGTCTCCACTAATTT+TGG - chr8_1:10028910-10028929 Msa1177650:CDS 30.0%
! AGCTTTTCCTTATAGAGAAT+AGG - chr8_1:10028956-10028975 Msa1177650:CDS 30.0%
! GCTTTTCCTTATAGAGAATA+GGG - chr8_1:10028957-10028976 Msa1177650:CDS 30.0%
TCTAATCCCTATTCTCTATA+AGG + chr8_1:10028966-10028985 None:intergenic 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_1:10029014-10029033 Msa1177650:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_1:10029024-10029043 Msa1177650:CDS 30.0%
TAACTAACAATGCTATGTGA+AGG - chr8_1:10029055-10029074 Msa1177650:CDS 30.0%
AACTAACAATGCTATGTGAA+GGG - chr8_1:10029056-10029075 Msa1177650:CDS 30.0%
AGAGAGATAGAGAGAAAAGA+GGG + chr8_1:10026968-10026987 None:intergenic 35.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_1:10027021-10027040 Msa1177650:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_1:10027204-10027223 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_1:10027205-10027224 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_1:10027341-10027360 None:intergenic 35.0%
TAGGAAGATTCAGCATAAGA+AGG - chr8_1:10027701-10027720 Msa1177650:CDS 35.0%
!! TATGAACCGTAAGTTGGTTT+CGG + chr8_1:10028119-10028138 None:intergenic 35.0%
CCTGTGAATCAAACAAAGTT+TGG + chr8_1:10028222-10028241 None:intergenic 35.0%
! CCAAACTTTGTTTGATTCAC+AGG - chr8_1:10028219-10028238 Msa1177650:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_1:10028248-10028267 Msa1177650:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_1:10028617-10028636 Msa1177650:intron 35.0%
! TTTATTGGTGGCAACATCAT+TGG + chr8_1:10028730-10028749 None:intergenic 35.0%
! TATGTCTCCACTAATTTTGG+TGG - chr8_1:10028913-10028932 Msa1177650:CDS 35.0%
ACTAACAATGCTATGTGAAG+GGG - chr8_1:10029057-10029076 Msa1177650:CDS 35.0%
!! GTGATTGATAGCCATACTTT+TGG - chr8_1:10029152-10029171 Msa1177650:five_prime_UTR 35.0%
AGAGAGATAGAGAGAAAAGA+GGG + chr8_1:10026968-10026987 None:intergenic 35.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_1:10027021-10027040 Msa1177650:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_1:10027204-10027223 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_1:10027205-10027224 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_1:10027341-10027360 None:intergenic 35.0%
TAGGAAGATTCAGCATAAGA+AGG - chr8_1:10027701-10027720 Msa1177650:CDS 35.0%
!! TATGAACCGTAAGTTGGTTT+CGG + chr8_1:10028119-10028138 None:intergenic 35.0%
CCTGTGAATCAAACAAAGTT+TGG + chr8_1:10028222-10028241 None:intergenic 35.0%
! CCAAACTTTGTTTGATTCAC+AGG - chr8_1:10028219-10028238 Msa1177650:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_1:10028248-10028267 Msa1177650:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_1:10028617-10028636 Msa1177650:intron 35.0%
! TTTATTGGTGGCAACATCAT+TGG + chr8_1:10028730-10028749 None:intergenic 35.0%
! TATGTCTCCACTAATTTTGG+TGG - chr8_1:10028913-10028932 Msa1177650:CDS 35.0%
ACTAACAATGCTATGTGAAG+GGG - chr8_1:10029057-10029076 Msa1177650:CDS 35.0%
!! GTGATTGATAGCCATACTTT+TGG - chr8_1:10029152-10029171 Msa1177650:five_prime_UTR 35.0%
GAGAGAGATAGAGAGAAAAG+AGG + chr8_1:10026969-10026988 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_1:10027027-10027046 Msa1177650:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_1:10027032-10027051 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_1:10027030-10027049 Msa1177650:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_1:10027038-10027057 Msa1177650:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_1:10027039-10027058 Msa1177650:three_prime_UTR 40.0%
!! TGTTGAAGAAGGTGTTGATG+AGG + chr8_1:10027149-10027168 None:intergenic 40.0%
!! ATGTGAGGTGATTTTGGTGA+TGG + chr8_1:10027358-10027377 None:intergenic 40.0%
! GGTTGTATGTGAGGTGATTT+TGG + chr8_1:10027364-10027383 None:intergenic 40.0%
!!! AGCTGTTTTGGTTGTATGTG+AGG + chr8_1:10027373-10027392 None:intergenic 40.0%
CATACAACCAAAACAGCTTC+TGG - chr8_1:10027375-10027394 Msa1177650:three_prime_UTR 40.0%
!! TCTTTTGGATCTTGGTGTGA+TGG + chr8_1:10027431-10027450 None:intergenic 40.0%
TCACACCAAGATCCAAAAGA+AGG - chr8_1:10027431-10027450 Msa1177650:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_1:10027742-10027761 Msa1177650:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_1:10027743-10027762 Msa1177650:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_1:10027759-10027778 Msa1177650:CDS 40.0%
! CAGCTAAGAAACAAGTTGAG+AGG - chr8_1:10028276-10028295 Msa1177650:intron 40.0%
! AATTTCTGTGAGTTGGAGCA+GGG + chr8_1:10028355-10028374 None:intergenic 40.0%
GCAAGAGAATTTCTGTGAGT+TGG + chr8_1:10028362-10028381 None:intergenic 40.0%
ACTCACAGAAATTCTCTTGC+TGG - chr8_1:10028362-10028381 Msa1177650:CDS 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_1:10028520-10028539 Msa1177650:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_1:10028626-10028645 Msa1177650:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_1:10028647-10028666 Msa1177650:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_1:10028650-10028669 Msa1177650:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_1:10028691-10028710 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_1:10028692-10028711 None:intergenic 40.0%
TCAGCTACCACCAAAATTAG+TGG + chr8_1:10028923-10028942 None:intergenic 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_1:10029027-10029046 Msa1177650:CDS 40.0%
GAGAGAGATAGAGAGAAAAG+AGG + chr8_1:10026969-10026988 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_1:10027027-10027046 Msa1177650:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_1:10027032-10027051 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_1:10027030-10027049 Msa1177650:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_1:10027038-10027057 Msa1177650:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_1:10027039-10027058 Msa1177650:three_prime_UTR 40.0%
!! TGTTGAAGAAGGTGTTGATG+AGG + chr8_1:10027149-10027168 None:intergenic 40.0%
!! ATGTGAGGTGATTTTGGTGA+TGG + chr8_1:10027358-10027377 None:intergenic 40.0%
! GGTTGTATGTGAGGTGATTT+TGG + chr8_1:10027364-10027383 None:intergenic 40.0%
!!! AGCTGTTTTGGTTGTATGTG+AGG + chr8_1:10027373-10027392 None:intergenic 40.0%
CATACAACCAAAACAGCTTC+TGG - chr8_1:10027375-10027394 Msa1177650:three_prime_UTR 40.0%
!! TCTTTTGGATCTTGGTGTGA+TGG + chr8_1:10027431-10027450 None:intergenic 40.0%
TCACACCAAGATCCAAAAGA+AGG - chr8_1:10027431-10027450 Msa1177650:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_1:10027742-10027761 Msa1177650:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_1:10027743-10027762 Msa1177650:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_1:10027759-10027778 Msa1177650:CDS 40.0%
! CAGCTAAGAAACAAGTTGAG+AGG - chr8_1:10028276-10028295 Msa1177650:intron 40.0%
! AATTTCTGTGAGTTGGAGCA+GGG + chr8_1:10028355-10028374 None:intergenic 40.0%
GCAAGAGAATTTCTGTGAGT+TGG + chr8_1:10028362-10028381 None:intergenic 40.0%
ACTCACAGAAATTCTCTTGC+TGG - chr8_1:10028362-10028381 Msa1177650:CDS 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_1:10028520-10028539 Msa1177650:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_1:10028626-10028645 Msa1177650:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_1:10028647-10028666 Msa1177650:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_1:10028650-10028669 Msa1177650:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_1:10028691-10028710 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_1:10028692-10028711 None:intergenic 40.0%
TCAGCTACCACCAAAATTAG+TGG + chr8_1:10028923-10028942 None:intergenic 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_1:10029027-10029046 Msa1177650:CDS 40.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_1:10027061-10027080 Msa1177650:three_prime_UTR 45.0%
!! TGAAGAAGGTGTTGATGAGG+TGG + chr8_1:10027146-10027165 None:intergenic 45.0%
GAGAAGGAAGTTGAAGAGAG+AGG + chr8_1:10027325-10027344 None:intergenic 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_1:10027748-10027767 Msa1177650:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_1:10027792-10027811 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_1:10027793-10027812 Msa1177650:CDS 45.0%
! GAATTTCTGTGAGTTGGAGC+AGG + chr8_1:10028356-10028375 None:intergenic 45.0%
GTGTCAGTTTGTGGTGACAA+TGG + chr8_1:10028404-10028423 None:intergenic 45.0%
TCTTCAGCAGTGTCAGTTTG+TGG + chr8_1:10028413-10028432 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_1:10028469-10028488 Msa1177650:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_1:10028474-10028493 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_1:10028475-10028494 Msa1177650:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_1:10028662-10028681 Msa1177650:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_1:10028701-10028720 Msa1177650:CDS 45.0%
! TCGTGTTGGTGCTTTATTGG+TGG + chr8_1:10028742-10028761 None:intergenic 45.0%
! GGATCGTGTTGGTGCTTTAT+TGG + chr8_1:10028745-10028764 None:intergenic 45.0%
GTCAGACATAAGGATCGTGT+TGG + chr8_1:10028756-10028775 None:intergenic 45.0%
ACACGATCCTTATGTCTGAC+AGG - chr8_1:10028756-10028775 Msa1177650:CDS 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_1:10028766-10028785 None:intergenic 45.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_1:10027061-10027080 Msa1177650:three_prime_UTR 45.0%
!! TGAAGAAGGTGTTGATGAGG+TGG + chr8_1:10027146-10027165 None:intergenic 45.0%
GAGAAGGAAGTTGAAGAGAG+AGG + chr8_1:10027325-10027344 None:intergenic 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_1:10027748-10027767 Msa1177650:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_1:10027792-10027811 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_1:10027793-10027812 Msa1177650:CDS 45.0%
! GAATTTCTGTGAGTTGGAGC+AGG + chr8_1:10028356-10028375 None:intergenic 45.0%
GTGTCAGTTTGTGGTGACAA+TGG + chr8_1:10028404-10028423 None:intergenic 45.0%
TCTTCAGCAGTGTCAGTTTG+TGG + chr8_1:10028413-10028432 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_1:10028469-10028488 Msa1177650:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_1:10028474-10028493 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_1:10028475-10028494 Msa1177650:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_1:10028662-10028681 Msa1177650:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_1:10028701-10028720 Msa1177650:CDS 45.0%
! TCGTGTTGGTGCTTTATTGG+TGG + chr8_1:10028742-10028761 None:intergenic 45.0%
! GGATCGTGTTGGTGCTTTAT+TGG + chr8_1:10028745-10028764 None:intergenic 45.0%
GTCAGACATAAGGATCGTGT+TGG + chr8_1:10028756-10028775 None:intergenic 45.0%
ACACGATCCTTATGTCTGAC+AGG - chr8_1:10028756-10028775 Msa1177650:CDS 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_1:10028766-10028785 None:intergenic 45.0%
!!! AAAGAGGGCGCTGACTTTTG+AGG + chr8_1:10026953-10026972 None:intergenic 50.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_1:10027122-10027141 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_1:10027137-10027156 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_1:10027140-10027159 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_1:10027751-10027770 Msa1177650:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_1:10028704-10028723 Msa1177650:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_1:10028835-10028854 Msa1177650:CDS 50.0%
!!! AAAGAGGGCGCTGACTTTTG+AGG + chr8_1:10026953-10026972 None:intergenic 50.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_1:10027122-10027141 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_1:10027137-10027156 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_1:10027140-10027159 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_1:10027751-10027770 Msa1177650:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_1:10028704-10028723 Msa1177650:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_1:10028835-10028854 Msa1177650:CDS 50.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_1:10027125-10027144 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_1:10027128-10027147 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_1:10028716-10028735 None:intergenic 55.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_1:10027125-10027144 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_1:10027128-10027147 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_1:10028716-10028735 None:intergenic 55.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_1:10027092-10027111 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_1:10027096-10027115 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_1:10027113-10027132 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_1:10027116-10027135 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_1:10027119-10027138 None:intergenic 60.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_1:10027092-10027111 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_1:10027096-10027115 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_1:10027113-10027132 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_1:10027116-10027135 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_1:10027119-10027138 None:intergenic 60.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_1:10027101-10027120 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_1:10027104-10027123 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_1:10027107-10027126 None:intergenic 65.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_1:10027101-10027120 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_1:10027104-10027123 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_1:10027107-10027126 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10026933 10029197 10026933 ID=Msa1177650;Name=Msa1177650
chr8_1 mRNA 10026933 10029197 10026933 ID=Msa1177650-mRNA-1;Parent=Msa1177650;Name=Msa1177650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|3|464|336
chr8_1 exon 10026933 10027889 10026933 ID=Msa1177650-mRNA-1:exon:3469;Parent=Msa1177650-mRNA-1
chr8_1 exon 10028316 10028426 10028316 ID=Msa1177650-mRNA-1:exon:3468;Parent=Msa1177650-mRNA-1
chr8_1 exon 10028678 10029197 10028678 ID=Msa1177650-mRNA-1:exon:3467;Parent=Msa1177650-mRNA-1
chr8_1 five_prime_UTR 10029085 10029197 10029085 ID=Msa1177650-mRNA-1:five_prime_utr;Parent=Msa1177650-mRNA-1
chr8_1 CDS 10028678 10029084 10028678 ID=Msa1177650-mRNA-1:cds;Parent=Msa1177650-mRNA-1
chr8_1 CDS 10028316 10028426 10028316 ID=Msa1177650-mRNA-1:cds;Parent=Msa1177650-mRNA-1
chr8_1 CDS 10027397 10027889 10027397 ID=Msa1177650-mRNA-1:cds;Parent=Msa1177650-mRNA-1
chr8_1 three_prime_UTR 10026933 10027396 10026933 ID=Msa1177650-mRNA-1:three_prime_utr;Parent=Msa1177650-mRNA-1
Gene Sequence

>Msa1177650

ATGGAGGTAGATTGGGATCTACATGCTGTAGTCAGAGGCTATACCAACCTCACCTCCTCCTCTTCCTCCTCCTCCACCACCTCAACAACCACCTTAGCCACCTCATCAACACCTTCTTCAACATCTTATAGTAATAATAACTTTTTCTCTATTTACCCTACAGAACAAACAAGTCAAGTTTTTTCACTTTCAAACCCCTTTGAAACTAAAAGTTCCATTGAAGAATTGCATGAACTTTGCAAACCTTTCTTATTCAAATCATCATCATCATCACAACCTCTCTCTTCAACTTCCTTCTCTTATTCATCACCATCACCAAAATCACCTCACATACAACCAAAACAGCTTCTGGTTAATAACAAGCTTCATCATGCTGCTTCTGCCATCACACCAAGATCCAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGCTCACCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAAGGATGTTCAGCTAAGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCACAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGACACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTCTTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCTTGTGGTGGCCAATGA
Protein sequence

>Msa1177650

MEVDWDLHAVVRGYTNLTSSSSSSSTTSTTTLATSSTPSSTSYSNNNFFSIYPTEQTSQVFSLSNPFETKSSIEELHELCKPFLFKSSSSSQPLSSTSFSYSSPSPKSPHIQPKQLLVNNKLHHAASAITPRSKRRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSAKKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTDTAEDSSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*