AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0935730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935730 MtrunA17_Chr6g0451471 92.568 148 10 1 31 177 31 178 3.41e-77 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935730 AT5G14910.1 48.634 183 83 5 1 181 1 174 1.72e-46 150
Msa0935730 AT5G14910.2 48.634 183 83 5 1 181 1 174 1.72e-46 150

Find 46 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTTTAATCAGGAAAATT+TGG 0.159312 6_3:-6358086 None:intergenic
TACTCTCACCATGCTCTTTC+AGG 0.186580 6_3:+6354663 Msa0935730:CDS
GTAGAAACCATACAAGGTTT+AGG 0.262884 6_3:+6357943 Msa0935730:CDS
ACCTTTGACCAAAGCTTTAG+AGG 0.283689 6_3:+6356379 Msa0935730:CDS
ACTTTGTATAGGCCTGATTA+AGG 0.290609 6_3:+6358114 Msa0935730:three_prime_UTR
AAAATTGTGGCAATTGGTTT+TGG 0.326078 6_3:-6354338 None:intergenic
TGTTTCATCTTCAACTGCTT+TGG 0.327503 6_3:-6354539 None:intergenic
AGAGTATCAGATGGAGAAAT+AGG 0.349041 6_3:-6354646 None:intergenic
ATTAATTCATACCCTTAATC+AGG 0.349579 6_3:-6358126 None:intergenic
TAGAAACCATACAAGGTTTA+GGG 0.352194 6_3:+6357944 Msa0935730:CDS
AAGCCTACTGCACTTTGTAT+AGG 0.363217 6_3:+6358103 Msa0935730:three_prime_UTR
TGAGGGACTCGCAACTTTAG+AGG 0.364918 6_3:+6356954 Msa0935730:CDS
TTTGAACCCTAAACCTTGTA+TGG 0.367059 6_3:-6357950 None:intergenic
TAGAGCTACCTCTAAAGCTT+TGG 0.398332 6_3:-6356387 None:intergenic
TTTGAAGGTTAATGTATTTG+AGG 0.412702 6_3:+6356936 Msa0935730:CDS
TTGAAGGTTAATGTATTTGA+GGG 0.430100 6_3:+6356937 Msa0935730:CDS
TACAGGAGTGGCTTCTAGTC+TGG 0.436605 6_3:+6357921 Msa0935730:CDS
TGATTGAAAATTGTGGCAAT+TGG 0.440887 6_3:-6354344 None:intergenic
AAGTGCAGTAGGCTTTAATC+AGG 0.447682 6_3:-6358095 None:intergenic
CTTTGTATAGGCCTGATTAA+GGG 0.464318 6_3:+6358115 Msa0935730:three_prime_UTR
TGTTGATAAAACTTTGGATA+GGG 0.467540 6_3:+6354282 Msa0935730:five_prime_UTR
GAAGAAGTAGAAGATGAAGA+AGG 0.473631 6_3:-6354430 None:intergenic
TTGTTGATAAAACTTTGGAT+AGG 0.477074 6_3:+6354281 Msa0935730:five_prime_UTR
TTAATCAGGAAAATTTGGAC+AGG 0.501117 6_3:-6358081 None:intergenic
ACCTCTAAAGCTTTGGTCAA+AGG 0.511214 6_3:-6356380 None:intergenic
AAGAAGTAGAAGATGAAGAA+GGG 0.513038 6_3:-6354429 None:intergenic
TTCATGCCACTCTCGCATGA+AGG 0.521160 6_3:+6354477 Msa0935730:CDS
GGAGAAATAGGAACAACAAC+AGG 0.526893 6_3:-6354634 None:intergenic
TTTCAATGTTTGAAGGCAGA+GGG 0.537717 6_3:+6356332 Msa0935730:intron
GCTGGTTACTTTAATGCCAA+TGG 0.540349 6_3:-6358292 None:intergenic
CAGACAACAATTCAAGCTAC+AGG 0.545265 6_3:+6357904 Msa0935730:CDS
GTTGCCTAGACTAAATCTGC+TGG 0.584216 6_3:+6358018 Msa0935730:exon
CTTAAATGAGAAGACACCAT+TGG 0.587707 6_3:+6358276 Msa0935730:three_prime_UTR
AGCATGGTGAGAGTATCAGA+TGG 0.591718 6_3:-6354655 None:intergenic
TACACCAGCAGATTTAGTCT+AGG 0.594029 6_3:-6358022 None:intergenic
TCTAAAGCTTTGGTCAAAGG+TGG 0.599903 6_3:-6356377 None:intergenic
AGAGTGCCTTCATGCGAGAG+TGG 0.612644 6_3:-6354483 None:intergenic
AGGCCTATACAAAGTGCAGT+AGG 0.612753 6_3:-6358106 None:intergenic
CTTTGGTCACAAATAAACAA+CGG 0.624612 6_3:-6354522 None:intergenic
AGTCTGGTAGAAACCATACA+AGG 0.626902 6_3:+6357937 Msa0935730:CDS
GCAACAAACATCAGTAACCT+CGG 0.649971 6_3:+6354603 Msa0935730:CDS
AGATGAAGATGAAAGTAGTG+TGG 0.655193 6_3:-6354374 None:intergenic
GAAATAGGAACAACAACAGG+TGG 0.659550 6_3:-6354631 None:intergenic
AACAATTCAAGCTACAGGAG+TGG 0.666112 6_3:+6357909 Msa0935730:CDS
GTGTTATACCTGAAAGAGCA+TGG 0.678714 6_3:-6354671 None:intergenic
AACAACAGGTGGTTGCTCCG+AGG 0.710522 6_3:-6354620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCAAATTTTTTCAAAT+GGG - chr6_3:6354760-6354779 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAA+TGG - chr6_3:6354761-6354780 None:intergenic 10.0%
!!! AAATCAAATTTTTTTCATAT+GGG - chr6_3:6354883-6354902 None:intergenic 10.0%
!!! AAAATCAAATTTTTTTCATA+TGG - chr6_3:6354884-6354903 None:intergenic 10.0%
!! ATTCTGAATTATAAAAAATT+CGG - chr6_3:6356560-6356579 None:intergenic 10.0%
!! AAAATAAAAATTATATGTCA+TGG - chr6_3:6356892-6356911 None:intergenic 10.0%
!!! ACATATAATTTTTATTTTGT+AGG + chr6_3:6356894-6356913 Msa0935730:intron 10.0%
!!! AGTTTTTTTTTTCTTGAAAT+TGG + chr6_3:6354960-6354979 Msa0935730:intron 15.0%
!!! GTTTTTTTTTTCTTGAAATT+GGG + chr6_3:6354961-6354980 Msa0935730:intron 15.0%
!!! TTTTTTTTTTCTTGAAATTG+GGG + chr6_3:6354962-6354981 Msa0935730:intron 15.0%
!! AGTAATAAAATGCATATTTA+AGG + chr6_3:6355526-6355545 Msa0935730:intron 15.0%
!! GTAATAAAATGCATATTTAA+GGG + chr6_3:6355527-6355546 Msa0935730:intron 15.0%
!!! ATTTTGTTCTGATTTTTTTA+TGG + chr6_3:6356482-6356501 Msa0935730:intron 15.0%
!! CGATTCTTATTATAATTTAA+AGG + chr6_3:6356622-6356641 Msa0935730:intron 15.0%
!!! TGCTTAGTTTTAAAAATAAA+GGG - chr6_3:6357211-6357230 None:intergenic 15.0%
!!! TTGCTTAGTTTTAAAAATAA+AGG - chr6_3:6357212-6357231 None:intergenic 15.0%
!!! CAATTTTCTTCTAATAAAAT+TGG + chr6_3:6357358-6357377 Msa0935730:intron 15.0%
!! TTCTAATAAAATTGGAAATT+TGG + chr6_3:6357366-6357385 Msa0935730:intron 15.0%
!!! AATTTCTTTTTTGTATTAGA+AGG + chr6_3:6358146-6358165 Msa0935730:three_prime_UTR 15.0%
!!! ATTTCTTTTTTGTATTAGAA+GGG + chr6_3:6358147-6358166 Msa0935730:three_prime_UTR 15.0%
!!! TTATCATATTTCGAATTTTT+TGG - chr6_3:6358231-6358250 None:intergenic 15.0%
!!! TTCTTTTGTTGATAAAACTT+TGG + chr6_3:6354276-6354295 Msa0935730:five_prime_UTR 20.0%
!!! AAAATCACAAATTTTCACAT+TGG - chr6_3:6354852-6354871 None:intergenic 20.0%
!! ATCAAACAAAGAACAAAAAT+TGG - chr6_3:6354923-6354942 None:intergenic 20.0%
!!! TTTTTTTTTCTTGAAATTGG+GGG + chr6_3:6354963-6354982 Msa0935730:intron 20.0%
!!! TCATTTTCTGAAAATATTAC+CGG - chr6_3:6355214-6355233 None:intergenic 20.0%
!! TTTATTACTCAAATTATCCT+GGG - chr6_3:6355515-6355534 None:intergenic 20.0%
!!! TTTTATTACTCAAATTATCC+TGG - chr6_3:6355516-6355535 None:intergenic 20.0%
!!! ATAAATGGACATTTTTTTTG+AGG + chr6_3:6355745-6355764 Msa0935730:intron 20.0%
!! ATCTTAAAAGTTGTATTGTA+GGG + chr6_3:6355889-6355908 Msa0935730:intron 20.0%
!! TGATTATTTCAATCACATTA+CGG - chr6_3:6357090-6357109 None:intergenic 20.0%
!! AAGAATGATTCTTAATAACT+AGG + chr6_3:6357109-6357128 Msa0935730:intron 20.0%
!!! GCTTAGTTTTAAAAATAAAG+GGG - chr6_3:6357210-6357229 None:intergenic 20.0%
!! GATAAAATAATGAGAATTGA+GGG - chr6_3:6357267-6357286 None:intergenic 20.0%
!!! ATTAGAAGAAAATTGATAGT+AGG - chr6_3:6357353-6357372 None:intergenic 20.0%
!! AAAATATGAATATTCTGAGT+GGG + chr6_3:6357530-6357549 Msa0935730:intron 20.0%
!!! GTTAAGCTTTTTATTATACA+AGG + chr6_3:6357770-6357789 Msa0935730:intron 20.0%
!! TTGTTGATAAAACTTTGGAT+AGG + chr6_3:6354281-6354300 Msa0935730:five_prime_UTR 25.0%
!! TGTTGATAAAACTTTGGATA+GGG + chr6_3:6354282-6354301 Msa0935730:five_prime_UTR 25.0%
!!! CCATTTTTGATTGAAAATTG+TGG - chr6_3:6354354-6354373 None:intergenic 25.0%
!! CCACAATTTTCAATCAAAAA+TGG + chr6_3:6354351-6354370 Msa0935730:exon 25.0%
!!! AAAATGGAACTTTTTTCACA+TGG - chr6_3:6354791-6354810 None:intergenic 25.0%
!!! AAAAACCAACTTTTTCACAT+GGG - chr6_3:6354822-6354841 None:intergenic 25.0%
!!! AAAAAACCAACTTTTTCACA+TGG - chr6_3:6354823-6354842 None:intergenic 25.0%
!!! GATGATTTTAAGATTGATGA+AGG + chr6_3:6355087-6355106 Msa0935730:intron 25.0%
!! TTTAAGATTGATGAAGGTTA+TGG + chr6_3:6355093-6355112 Msa0935730:intron 25.0%
! GAAATAAAACACTTTCAAGA+AGG - chr6_3:6355798-6355817 None:intergenic 25.0%
!!! AATACAACTTTTAAGATGAG+GGG - chr6_3:6355886-6355905 None:intergenic 25.0%
!!! CAATACAACTTTTAAGATGA+GGG - chr6_3:6355887-6355906 None:intergenic 25.0%
!!! ACAATACAACTTTTAAGATG+AGG - chr6_3:6355888-6355907 None:intergenic 25.0%
! CATCTTAAAAGTTGTATTGT+AGG + chr6_3:6355888-6355907 Msa0935730:intron 25.0%
! TATGGAGAATCTAAGAATTT+GGG - chr6_3:6356136-6356155 None:intergenic 25.0%
! ATTTAAGTGATTCAAGTGTA+TGG - chr6_3:6356154-6356173 None:intergenic 25.0%
!! AGTCTATTTTCAATGTTTGA+AGG + chr6_3:6356325-6356344 Msa0935730:intron 25.0%
!!! TTCTGATTTTTTTATGGACA+TGG + chr6_3:6356488-6356507 Msa0935730:intron 25.0%
!! AATTCCGTGAAATAATTTGT+TGG + chr6_3:6356761-6356780 Msa0935730:intron 25.0%
! ATGACCAACAAATTATTTCA+CGG - chr6_3:6356768-6356787 None:intergenic 25.0%
!!! CTTCTTTTGTTGTTCTTTTT+TGG + chr6_3:6356800-6356819 Msa0935730:intron 25.0%
!!! GTTCTTTTTTGGTTTGTTAT+TGG + chr6_3:6356811-6356830 Msa0935730:intron 25.0%
! TTTGAAGGTTAATGTATTTG+AGG + chr6_3:6356936-6356955 Msa0935730:CDS 25.0%
! TTGAAGGTTAATGTATTTGA+GGG + chr6_3:6356937-6356956 Msa0935730:CDS 25.0%
!!! AGAGTTTGATTTTCATCATA+TGG - chr6_3:6357011-6357030 None:intergenic 25.0%
!! ATTTGGACTATCTACAATTT+TGG + chr6_3:6357157-6357176 Msa0935730:intron 25.0%
! GGATAAAATAATGAGAATTG+AGG - chr6_3:6357268-6357287 None:intergenic 25.0%
! ATCACAAACTCTCAATTATT+TGG - chr6_3:6357289-6357308 None:intergenic 25.0%
! AAGATAGAAATCTTGAGATT+TGG + chr6_3:6357431-6357450 Msa0935730:intron 25.0%
! CAAAATATGAATATTCTGAG+TGG + chr6_3:6357529-6357548 Msa0935730:intron 25.0%
!!! ATTAGGATTAGTTGTACTTT+TGG - chr6_3:6357672-6357691 None:intergenic 25.0%
! TCTGTTAGAAGATAGTTATT+AGG - chr6_3:6357689-6357708 None:intergenic 25.0%
! TTAGCATAAACATTATGCAA+TGG + chr6_3:6357842-6357861 Msa0935730:intron 25.0%
! ATTAATTCATACCCTTAATC+AGG - chr6_3:6358129-6358148 None:intergenic 25.0%
!! AAAATTGTGGCAATTGGTTT+TGG - chr6_3:6354341-6354360 None:intergenic 30.0%
TGATTGAAAATTGTGGCAAT+TGG - chr6_3:6354347-6354366 None:intergenic 30.0%
AAGAAGTAGAAGATGAAGAA+GGG - chr6_3:6354432-6354451 None:intergenic 30.0%
CTTTGGTCACAAATAAACAA+CGG - chr6_3:6354525-6354544 None:intergenic 30.0%
! CACATGGGATTTTCAAAAAA+TGG - chr6_3:6354807-6354826 None:intergenic 30.0%
AAAATCCCATGTGAAAAAGT+TGG + chr6_3:6354814-6354833 Msa0935730:intron 30.0%
GGTCATTATGACATGAAATT+AGG + chr6_3:6354995-6355014 Msa0935730:intron 30.0%
ATGACATGAAATTAGGATAG+TGG + chr6_3:6355002-6355021 Msa0935730:intron 30.0%
! AAATTAGGATAGTGGTGAAA+TGG + chr6_3:6355010-6355029 Msa0935730:intron 30.0%
! AATTAGGATAGTGGTGAAAT+GGG + chr6_3:6355011-6355030 Msa0935730:intron 30.0%
TAGATATGACACTTACACAT+AGG + chr6_3:6355186-6355205 Msa0935730:intron 30.0%
AGATATGACACTTACACATA+GGG + chr6_3:6355187-6355206 Msa0935730:intron 30.0%
TGAACTTAGACAAATCAGTT+AGG + chr6_3:6355372-6355391 Msa0935730:intron 30.0%
GAACTTAGACAAATCAGTTA+GGG + chr6_3:6355373-6355392 Msa0935730:intron 30.0%
GAGAATTATACTGTCTTAGA+AGG + chr6_3:6355421-6355440 Msa0935730:intron 30.0%
ATTAGTGAGAATAACAGTGT+AGG - chr6_3:6355680-6355699 None:intergenic 30.0%
!! GATGTGTGTAGCTTTATAAA+TGG + chr6_3:6355730-6355749 Msa0935730:intron 30.0%
TGCCATATCCTATATAATGT+GGG - chr6_3:6355832-6355851 None:intergenic 30.0%
ATGCCATATCCTATATAATG+TGG - chr6_3:6355833-6355852 None:intergenic 30.0%
ACATTATATAGGATATGGCA+TGG + chr6_3:6355832-6355851 Msa0935730:intron 30.0%
CATTATATAGGATATGGCAT+GGG + chr6_3:6355833-6355852 Msa0935730:intron 30.0%
! CATGGGAATTTGTTTATAAG+TGG + chr6_3:6355850-6355869 Msa0935730:intron 30.0%
! GAATTTGTTTATAAGTGGAG+TGG + chr6_3:6355855-6355874 Msa0935730:intron 30.0%
CTCATACCATCTAAGAATTT+GGG - chr6_3:6355930-6355949 None:intergenic 30.0%
TCTCATACCATCTAAGAATT+TGG - chr6_3:6355931-6355950 None:intergenic 30.0%
AAATTCTTAGATGGTATGAG+AGG + chr6_3:6355930-6355949 Msa0935730:intron 30.0%
CTGAAACTGTGTTTATAAGT+GGG + chr6_3:6356066-6356085 Msa0935730:intron 30.0%
GTATGGAGAATCTAAGAATT+TGG - chr6_3:6356137-6356156 None:intergenic 30.0%
ACCTTAAAATTGCATGCTTA+AGG + chr6_3:6356184-6356203 Msa0935730:intron 30.0%
CCTTAAAATTGCATGCTTAA+GGG + chr6_3:6356185-6356204 Msa0935730:intron 30.0%
ATTTGCACATTGTAAAGTCT+AGG - chr6_3:6356275-6356294 None:intergenic 30.0%
ACATTGAAGTAAGTGAACAA+GGG - chr6_3:6356436-6356455 None:intergenic 30.0%
TAGCATCATCACTGAATTAA+AGG - chr6_3:6356521-6356540 None:intergenic 30.0%
! TTTAATTCAGTGATGATGCT+AGG + chr6_3:6356520-6356539 Msa0935730:intron 30.0%
! TTAATTCAGTGATGATGCTA+GGG + chr6_3:6356521-6356540 Msa0935730:intron 30.0%
TTCTGTCTTATATAATCCTG+AGG + chr6_3:6356675-6356694 Msa0935730:intron 30.0%
! TAAAACAGCTATTGTTGTTG+TGG - chr6_3:6356717-6356736 None:intergenic 30.0%
! TTGATAATAGGCAAGTGTTA+GGG - chr6_3:6356865-6356884 None:intergenic 30.0%
! ATTGATAATAGGCAAGTGTT+AGG - chr6_3:6356866-6356885 None:intergenic 30.0%
!!! TTTTATTTTGTAGGAGACAG+AGG + chr6_3:6356903-6356922 Msa0935730:intron 30.0%
!!! TTTATTTTGTAGGAGACAGA+GGG + chr6_3:6356904-6356923 Msa0935730:intron 30.0%
!! AGAGGGTGTTAAAAATTTGA+AGG + chr6_3:6356921-6356940 Msa0935730:CDS 30.0%
AAATCAAACTCTTAAGCCAT+TGG + chr6_3:6357019-6357038 Msa0935730:intron 30.0%
AAACAATCATCGAAAACCAA+TGG - chr6_3:6357038-6357057 None:intergenic 30.0%
! GTTTTCGATGATTGTTTACA+AGG + chr6_3:6357041-6357060 Msa0935730:intron 30.0%
! CTTTTCTTATCCCACAAATT+TGG + chr6_3:6357140-6357159 Msa0935730:intron 30.0%
TGTAGATAGTCCAAATTTGT+GGG - chr6_3:6357153-6357172 None:intergenic 30.0%
TTGTAGATAGTCCAAATTTG+TGG - chr6_3:6357154-6357173 None:intergenic 30.0%
GGAAATTTGGTAAGATTTGA+AGG + chr6_3:6357379-6357398 Msa0935730:intron 30.0%
! TTTTTGTAGAATGTGAGACT+AGG + chr6_3:6357403-6357422 Msa0935730:intron 30.0%
! TTTTGTAGAATGTGAGACTA+GGG + chr6_3:6357404-6357423 Msa0935730:intron 30.0%
!!! TCGAGTGATTTTTTATGCTT+TGG + chr6_3:6357462-6357481 Msa0935730:intron 30.0%
!!! GTGATTTTTTATGCTTTGGT+TGG + chr6_3:6357466-6357485 Msa0935730:intron 30.0%
TTTAAGCGAGATAAAAGTGA+TGG + chr6_3:6357571-6357590 Msa0935730:intron 30.0%
TAGAAACCATACAAGGTTTA+GGG + chr6_3:6357944-6357963 Msa0935730:CDS 30.0%
TTAATCAGGAAAATTTGGAC+AGG - chr6_3:6358084-6358103 None:intergenic 30.0%
! AGGCTTTAATCAGGAAAATT+TGG - chr6_3:6358089-6358108 None:intergenic 30.0%
!!! TTCGAATTTTTTGGCGAAAA+AGG - chr6_3:6358222-6358241 None:intergenic 30.0%
AGATGAAGATGAAAGTAGTG+TGG - chr6_3:6354377-6354396 None:intergenic 35.0%
GAAGAAGTAGAAGATGAAGA+AGG - chr6_3:6354433-6354452 None:intergenic 35.0%
! TGGCATGAAAAAGTGCAAAA+TGG - chr6_3:6354466-6354485 None:intergenic 35.0%
TGTTTCATCTTCAACTGCTT+TGG - chr6_3:6354542-6354561 None:intergenic 35.0%
! AGAGTATCAGATGGAGAAAT+AGG - chr6_3:6354649-6354668 None:intergenic 35.0%
!! TGAAATTGGGGGTACTAAAT+TGG + chr6_3:6354974-6354993 Msa0935730:intron 35.0%
ACTTAGAGTAAATAATGCCC+AGG + chr6_3:6355495-6355514 Msa0935730:intron 35.0%
CAACCTACTCTATATCCTTT+AGG + chr6_3:6355586-6355605 Msa0935730:intron 35.0%
ACTCTCAATTATGTGCCTAA+AGG - chr6_3:6355604-6355623 None:intergenic 35.0%
TCCTACTATCATGAGTCTAT+GGG + chr6_3:6355648-6355667 Msa0935730:intron 35.0%
AAAGCTACACACATCTACAT+TGG - chr6_3:6355725-6355744 None:intergenic 35.0%
CTTTCAAGAAGGATACTAGT+GGG - chr6_3:6355787-6355806 None:intergenic 35.0%
ACTTTCAAGAAGGATACTAG+TGG - chr6_3:6355788-6355807 None:intergenic 35.0%
GTCCCACATTATATAGGATA+TGG + chr6_3:6355827-6355846 Msa0935730:intron 35.0%
TTTGTTTATAAGTGGAGTGG+AGG + chr6_3:6355858-6355877 Msa0935730:intron 35.0%
AGAGGTTATTCAAGATTCGT+TGG + chr6_3:6355948-6355967 Msa0935730:intron 35.0%
GAGGTTATTCAAGATTCGTT+GGG + chr6_3:6355949-6355968 Msa0935730:intron 35.0%
GCTGAAACTGTGTTTATAAG+TGG + chr6_3:6356065-6356084 Msa0935730:intron 35.0%
AAACTGTGTTTATAAGTGGG+AGG + chr6_3:6356069-6356088 Msa0935730:intron 35.0%
! CCCTTAAGCATGCAATTTTA+AGG - chr6_3:6356188-6356207 None:intergenic 35.0%
! TTTTCAATGTTTGAAGGCAG+AGG + chr6_3:6356331-6356350 Msa0935730:intron 35.0%
TTTCAATGTTTGAAGGCAGA+GGG + chr6_3:6356332-6356351 Msa0935730:intron 35.0%
CATTGAAGTAAGTGAACAAG+GGG - chr6_3:6356435-6356454 None:intergenic 35.0%
CACATTGAAGTAAGTGAACA+AGG - chr6_3:6356437-6356456 None:intergenic 35.0%
AGAATCAGTCGTATACATCT+TGG + chr6_3:6356575-6356594 Msa0935730:intron 35.0%
TGGTATATTTGAAGATCGTG+TGG + chr6_3:6356831-6356850 Msa0935730:intron 35.0%
!! TGTCATGGAGCATTGATAAT+AGG - chr6_3:6356877-6356896 None:intergenic 35.0%
!!! TTTGGTTGGTGAGTTTTGAA+TGG + chr6_3:6357480-6357499 Msa0935730:intron 35.0%
TTGTGCTTATTATGCTCAGT+TGG + chr6_3:6357876-6357895 Msa0935730:intron 35.0%
GTAGAAACCATACAAGGTTT+AGG + chr6_3:6357943-6357962 Msa0935730:CDS 35.0%
TTTGAACCCTAAACCTTGTA+TGG - chr6_3:6357953-6357972 None:intergenic 35.0%
! GACAGGCTAATCATTCTTTT+AGG - chr6_3:6358067-6358086 None:intergenic 35.0%
ACTTTGTATAGGCCTGATTA+AGG + chr6_3:6358114-6358133 Msa0935730:three_prime_UTR 35.0%
CTTTGTATAGGCCTGATTAA+GGG + chr6_3:6358115-6358134 Msa0935730:three_prime_UTR 35.0%
CTTAAATGAGAAGACACCAT+TGG + chr6_3:6358276-6358295 Msa0935730:three_prime_UTR 35.0%
!!! GCAATTGGTTTTGGTTTGGT+AGG - chr6_3:6354332-6354351 None:intergenic 40.0%
!!! TGTGGCAATTGGTTTTGGTT+TGG - chr6_3:6354336-6354355 None:intergenic 40.0%
GCAACAAACATCAGTAACCT+CGG + chr6_3:6354603-6354622 Msa0935730:CDS 40.0%
GAAATAGGAACAACAACAGG+TGG - chr6_3:6354634-6354653 None:intergenic 40.0%
GGAGAAATAGGAACAACAAC+AGG - chr6_3:6354637-6354656 None:intergenic 40.0%
GTGTTATACCTGAAAGAGCA+TGG - chr6_3:6354674-6354693 None:intergenic 40.0%
AAGGTGCACACTAGAATCAA+TGG - chr6_3:6354696-6354715 None:intergenic 40.0%
!! TCACAAGAGCATTGCAGAAA+AGG - chr6_3:6354715-6354734 None:intergenic 40.0%
! GGTTACACTGGTTGAAGATA+TGG + chr6_3:6355032-6355051 Msa0935730:intron 40.0%
! TACACTGGTTGAAGATATGG+TGG + chr6_3:6355035-6355054 Msa0935730:intron 40.0%
!! AGATATGGTGGTGGTTATTG+TGG + chr6_3:6355047-6355066 Msa0935730:intron 40.0%
TGATTGAATGTAACCCGTGT+TGG + chr6_3:6355237-6355256 Msa0935730:intron 40.0%
! CAGTGTTACCTAGCTCTTAA+TGG + chr6_3:6355312-6355331 Msa0935730:intron 40.0%
CTCGTAAGTATGCAGTTCAT+TGG + chr6_3:6355463-6355482 Msa0935730:intron 40.0%
GTGCCTAAAGGATATAGAGT+AGG - chr6_3:6355592-6355611 None:intergenic 40.0%
CTCATGATAGTAGGACGTTA+GGG - chr6_3:6355643-6355662 None:intergenic 40.0%
ACTCATGATAGTAGGACGTT+AGG - chr6_3:6355644-6355663 None:intergenic 40.0%
GTCCTACTATCATGAGTCTA+TGG + chr6_3:6355647-6355666 Msa0935730:intron 40.0%
TCCCATAGACTCATGATAGT+AGG - chr6_3:6355652-6355671 None:intergenic 40.0%
TATCATGAGTCTATGGGACA+AGG + chr6_3:6355654-6355673 Msa0935730:intron 40.0%
CACACATCTACATTGGAACA+TGG - chr6_3:6355718-6355737 None:intergenic 40.0%
CTGAGAGTCCCACATTATAT+AGG + chr6_3:6355821-6355840 Msa0935730:intron 40.0%
TTGTATTGTAGGGTCGAGTT+AGG + chr6_3:6355899-6355918 Msa0935730:intron 40.0%
GCTCAACCCAAATTCTTAGA+TGG + chr6_3:6355921-6355940 Msa0935730:intron 40.0%
! AAATCTAGAATGTGACCAGG+TGG - chr6_3:6355990-6356009 None:intergenic 40.0%
! TGGAAATCTAGAATGTGACC+AGG - chr6_3:6355993-6356012 None:intergenic 40.0%
ACATTCTAGATTTCCAGTCC+TGG + chr6_3:6355997-6356016 Msa0935730:intron 40.0%
CATTCTAGATTTCCAGTCCT+GGG + chr6_3:6355998-6356017 Msa0935730:intron 40.0%
TTGTGTTGAGAGTCTCTCAT+TGG + chr6_3:6356031-6356050 Msa0935730:intron 40.0%
! TCTAAAGCTTTGGTCAAAGG+TGG - chr6_3:6356380-6356399 None:intergenic 40.0%
! ACCTTTGACCAAAGCTTTAG+AGG + chr6_3:6356379-6356398 Msa0935730:CDS 40.0%
!! ACCTCTAAAGCTTTGGTCAA+AGG - chr6_3:6356383-6356402 None:intergenic 40.0%
!! TAGAGCTACCTCTAAAGCTT+TGG - chr6_3:6356390-6356409 None:intergenic 40.0%
! AGCGAGATAAAAGTGATGGA+AGG + chr6_3:6357575-6357594 Msa0935730:intron 40.0%
CAGACAACAATTCAAGCTAC+AGG + chr6_3:6357904-6357923 Msa0935730:CDS 40.0%
AACAATTCAAGCTACAGGAG+TGG + chr6_3:6357909-6357928 Msa0935730:CDS 40.0%
AGTCTGGTAGAAACCATACA+AGG + chr6_3:6357937-6357956 Msa0935730:CDS 40.0%
TACACCAGCAGATTTAGTCT+AGG - chr6_3:6358025-6358044 None:intergenic 40.0%
! AAGTGCAGTAGGCTTTAATC+AGG - chr6_3:6358098-6358117 None:intergenic 40.0%
AAGCCTACTGCACTTTGTAT+AGG + chr6_3:6358103-6358122 Msa0935730:three_prime_UTR 40.0%
!! AGCATGGTGAGAGTATCAGA+TGG - chr6_3:6354658-6354677 None:intergenic 45.0%
TACTCTCACCATGCTCTTTC+AGG + chr6_3:6354663-6354682 Msa0935730:CDS 45.0%
!! AGTGGTGAAATGGGTTACAC+TGG + chr6_3:6355020-6355039 Msa0935730:intron 45.0%
ACTGGTTGAAGATATGGTGG+TGG + chr6_3:6355038-6355057 Msa0935730:intron 45.0%
TGACACTTACACATAGGGAC+CGG + chr6_3:6355192-6355211 Msa0935730:intron 45.0%
TGTCCAACACTCACACATGT+CGG + chr6_3:6355260-6355279 Msa0935730:intron 45.0%
! TACCTAGCTCTTAATGGTGC+AGG + chr6_3:6355318-6355337 Msa0935730:intron 45.0%
AACCTGCACCATTAAGAGCT+AGG - chr6_3:6355323-6355342 None:intergenic 45.0%
TATAATGTGGGACTCTCAGC+AGG - chr6_3:6355820-6355839 None:intergenic 45.0%
TGACCAGGTGGTTTGACATT+GGG - chr6_3:6355978-6355997 None:intergenic 45.0%
ACAGAGAAATACTCTGCCTC+AGG - chr6_3:6356694-6356713 None:intergenic 45.0%
GTCTCATAGTCAATCTGCTC+TGG + chr6_3:6357621-6357640 Msa0935730:intron 45.0%
ATCTGCTCTGGCCACTATAA+TGG + chr6_3:6357633-6357652 Msa0935730:intron 45.0%
AACAAGTGCTCATGAGCTCT+TGG + chr6_3:6357793-6357812 Msa0935730:intron 45.0%
GTTGCCTAGACTAAATCTGC+TGG + chr6_3:6358018-6358037 Msa0935730:exon 45.0%
AGGCCTATACAAAGTGCAGT+AGG - chr6_3:6358109-6358128 None:intergenic 45.0%
TTCATGCCACTCTCGCATGA+AGG + chr6_3:6354477-6354496 Msa0935730:CDS 50.0%
!! TGAGTGTTGGACACCAACAC+GGG - chr6_3:6355253-6355272 None:intergenic 50.0%
!! GTGAGTGTTGGACACCAACA+CGG - chr6_3:6355254-6355273 None:intergenic 50.0%
TGTCCGACATGTGTGAGTGT+TGG - chr6_3:6355266-6355285 None:intergenic 50.0%
GCTCTTAATGGTGCAGGTTG+TGG + chr6_3:6355324-6355343 Msa0935730:intron 50.0%
TCACCCAATGTCAAACCACC+TGG + chr6_3:6355972-6355991 Msa0935730:intron 50.0%
GTGACCAGGTGGTTTGACAT+TGG - chr6_3:6355979-6355998 None:intergenic 50.0%
CCAACCGAACCGTACAAAAC+CGG - chr6_3:6356107-6356126 None:intergenic 50.0%
!!! CGGTTTTGTACGGTTCGGTT+GGG + chr6_3:6356105-6356124 Msa0935730:intron 50.0%
TGAGGGACTCGCAACTTTAG+AGG + chr6_3:6356954-6356973 Msa0935730:CDS 50.0%
CTCTGGCCACTATAATGGTG+CGG + chr6_3:6357638-6357657 Msa0935730:intron 50.0%
ACTATAATGGTGCGGCGTTG+CGG + chr6_3:6357646-6357665 Msa0935730:intron 50.0%
TACAGGAGTGGCTTCTAGTC+TGG + chr6_3:6357921-6357940 Msa0935730:CDS 50.0%
! AGAGTGCCTTCATGCGAGAG+TGG - chr6_3:6354486-6354505 None:intergenic 55.0%
AACAACAGGTGGTTGCTCCG+AGG - chr6_3:6354623-6354642 None:intergenic 55.0%
GGTGCAGGTTGTGGATGTGT+AGG + chr6_3:6355333-6355352 Msa0935730:intron 55.0%
ATTTCCAGTCCTGGGCGTGA+GGG + chr6_3:6356006-6356025 Msa0935730:intron 55.0%
!!! GCTGCCGGTTTTGTACGGTT+CGG + chr6_3:6356100-6356119 Msa0935730:intron 55.0%
!!! CCGGTTTTGTACGGTTCGGT+TGG + chr6_3:6356104-6356123 Msa0935730:intron 55.0%
GCAACGCCGCACCATTATAG+TGG - chr6_3:6357647-6357666 None:intergenic 55.0%
GATTTCCAGTCCTGGGCGTG+AGG + chr6_3:6356005-6356024 Msa0935730:intron 60.0%
TTTCCAGTCCTGGGCGTGAG+GGG + chr6_3:6356007-6356026 Msa0935730:intron 60.0%
AACACAAACCCCTCACGCCC+AGG - chr6_3:6356018-6356037 None:intergenic 60.0%
CCGTACAAAACCGGCAGCGA+GGG - chr6_3:6356098-6356117 None:intergenic 60.0%
!!! CCCTCGCTGCCGGTTTTGTA+CGG + chr6_3:6356095-6356114 Msa0935730:intron 60.0%
ACCGTACAAAACCGGCAGCG+AGG - chr6_3:6356099-6356118 None:intergenic 60.0%
AAACCCCTCACGCCCAGGAC+TGG - chr6_3:6356013-6356032 None:intergenic 65.0%
!! TGGGAGGCATCCCTCGCTGC+CGG + chr6_3:6356085-6356104 Msa0935730:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 6354253 6358299 6354253 ID=Msa0935730;Name=Msa0935730
chr6_3 mRNA 6354253 6358299 6354253 ID=Msa0935730-mRNA-1;Parent=Msa0935730;Name=Msa0935730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|1|1|1|0.75|0.6|5|253|186
chr6_3 exon 6354253 6354684 6354253 ID=Msa0935730-mRNA-1:exon:1956;Parent=Msa0935730-mRNA-1
chr6_3 exon 6356347 6356400 6356347 ID=Msa0935730-mRNA-1:exon:1957;Parent=Msa0935730-mRNA-1
chr6_3 exon 6356916 6356975 6356916 ID=Msa0935730-mRNA-1:exon:1958;Parent=Msa0935730-mRNA-1
chr6_3 exon 6357895 6358182 6357895 ID=Msa0935730-mRNA-1:exon:1959;Parent=Msa0935730-mRNA-1
chr6_3 exon 6358203 6358299 6358203 ID=Msa0935730-mRNA-1:exon:1960;Parent=Msa0935730-mRNA-1
chr6_3 five_prime_UTR 6354253 6354369 6354253 ID=Msa0935730-mRNA-1:five_prime_utr;Parent=Msa0935730-mRNA-1
chr6_3 CDS 6354370 6354684 6354370 ID=Msa0935730-mRNA-1:cds;Parent=Msa0935730-mRNA-1
chr6_3 CDS 6356347 6356400 6356347 ID=Msa0935730-mRNA-1:cds;Parent=Msa0935730-mRNA-1
chr6_3 CDS 6356916 6356975 6356916 ID=Msa0935730-mRNA-1:cds;Parent=Msa0935730-mRNA-1
chr6_3 CDS 6357895 6358026 6357895 ID=Msa0935730-mRNA-1:cds;Parent=Msa0935730-mRNA-1
chr6_3 three_prime_UTR 6358027 6358182 6358027 ID=Msa0935730-mRNA-1:three_prime_utr;Parent=Msa0935730-mRNA-1
chr6_3 three_prime_UTR 6358203 6358299 6358203 ID=Msa0935730-mRNA-1:three_prime_utr;Parent=Msa0935730-mRNA-1
Gene Sequence

>Msa0935730

ATGGCCACACTACTTTCATCTTCATCTCTTCACTCAATTCGTCTTTCTTCTTCTACAATCCCTTCTTCATCTTCTACTTCTTCTCATTCTCTTCCATTTTGCACTTTTTCATGCCACTCTCGCATGAAGGCACTCTCAATCAAGAAGAAAAACCGTTGTTTATTTGTGACCAAAGCAGTTGAAGATGAAACACAGCAAGAACAAGAACAAGCTGTTACTGATGTTGAACAACAGCAACAAACATCAGTAACCTCGGAGCAACCACCTGTTGTTGTTCCTATTTCTCCATCTGATACTCTCACCATGCTCTTTCAGGCAGAGGGAACATTGAATGAAACAGCTGTTCCACCTTTGACCAAAGCTTTAGAGGAGACAGAGGGTGTTAAAAATTTGAAGGTTAATGTATTTGAGGGACTCGCAACTTTAGAGTTGGAAAAGCAGACAACAATTCAAGCTACAGGAGTGGCTTCTAGTCTGGTAGAAACCATACAAGGTTTAGGGTTCAAATTACAGACATTAAATCTCAGTTTTGATGATGAAGATGTTGCAGCAGTTGCCTAG

Protein sequence

>Msa0935730

MATLLSSSSLHSIRLSSSTIPSSSSTSSHSLPFCTFSCHSRMKALSIKKKNRCLFVTKAVEDETQQEQEQAVTDVEQQQQTSVTSEQPPVVVPISPSDTLTMLFQAEGTLNETAVPPLTKALEETEGVKNLKVNVFEGLATLELEKQTTIQATGVASSLVETIQGLGFKLQTLNLSFDDEDVAAVA*