AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477900 MtrunA17_Chr3g0140351 97.143 840 5 3 1 826 1 835 0.0 1674
Msa0477900 MtrunA17_Chr2g0331131 79.857 839 144 5 8 826 3 836 0.0 1401
Msa0477900 MtrunA17_Chr8g0340411 79.167 840 146 6 7 826 2 832 0.0 1392
Msa0477900 MtrunA17_Chr2g0292391 65.197 839 253 11 16 826 9 836 0.0 1125
Msa0477900 MtrunA17_Chr4g0028991 64.174 829 273 8 16 826 24 846 0.0 1091
Msa0477900 MtrunA17_Chr2g0326731 60.259 848 303 11 2 826 3 839 0.0 1020
Msa0477900 MtrunA17_Chr2g0322731 24.275 655 346 26 20 576 103 705 7.98e-27 117
Msa0477900 MtrunA17_Chr8g0350321 22.041 490 294 17 204 663 375 806 5.11e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477900 AT4G32880.1 78.271 833 149 10 16 826 11 833 0.0 1343
Msa0477900 AT1G52150.1 76.741 847 164 8 2 826 1 836 0.0 1336
Msa0477900 AT1G52150.2 76.741 847 165 8 2 826 1 837 0.0 1335
Msa0477900 AT1G52150.3 76.095 799 158 8 2 778 1 788 0.0 1238
Msa0477900 AT2G34710.1 63.372 860 273 10 1 826 1 852 0.0 1077
Msa0477900 AT1G30490.1 61.557 848 280 10 9 826 10 841 0.0 1053
Msa0477900 AT5G60690.1 61.613 831 286 8 18 826 23 842 0.0 1033
Msa0477900 AT5G32670.1 63.514 74 27 0 284 357 37 110 1.88e-23 99.0
Msa0477900 AT1G79840.2 23.520 625 360 28 20 576 133 707 4.13e-22 102
Msa0477900 AT1G79840.3 23.520 625 360 27 20 576 46 620 4.22e-22 102
Msa0477900 AT1G79840.6 23.520 625 360 27 20 576 46 620 4.22e-22 102
Msa0477900 AT1G79840.1 23.520 625 360 27 20 576 104 678 5.24e-22 102
Msa0477900 AT1G79840.4 23.764 526 314 23 20 486 104 601 3.03e-20 96.3
Msa0477900 AT3G03260.1 22.822 482 251 21 15 400 19 475 6.98e-13 72.8
Msa0477900 AT3G03260.2 22.822 482 251 21 15 400 19 475 1.11e-12 72.0
Msa0477900 AT1G05230.8 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.4 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.9 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.10 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.7 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.11 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.2 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.6 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.5 20.816 490 287 16 204 664 300 717 2.92e-12 70.9
Msa0477900 AT1G05230.1 20.816 490 287 16 204 664 300 717 2.92e-12 70.9

Find 237 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATCTTATCTATGGTATT+TGG 0.142289 3_3:+82357631 Msa0477900:three_prime_UTR
ACTATACCTGCTGCATTATC+TGG 0.179885 3_3:-82357239 None:intergenic
GGTTCTGTGTTGCTCTTTAA+AGG 0.201093 3_3:+82356967 Msa0477900:CDS
TTTAGGCTTTACGTCATTTA+AGG 0.223191 3_3:+82354820 Msa0477900:intron
TATAAATATACCTTCTGTTC+TGG 0.245843 3_3:-82352349 None:intergenic
CGAGTAAGCGTTTGTGCTTC+AGG 0.246753 3_3:-82356738 None:intergenic
TGGCACCAGGTCGCGACTTC+TGG 0.250399 3_3:+82354228 Msa0477900:CDS
TGGAAGAAGGTAGCTTAATT+AGG 0.254921 3_3:+82352120 Msa0477900:five_prime_UTR
CAACTCAAAATAATCTTCTT+TGG 0.255574 3_3:-82352088 None:intergenic
CAAAGCTTCCATGTTGTTAC+AGG 0.257668 3_3:+82355191 Msa0477900:CDS
ATGATCAACAATATGAATTA+TGG 0.263716 3_3:-82354530 None:intergenic
GCACTTTCCCCTTCGCGTTT+TGG 0.273753 3_3:+82356681 Msa0477900:CDS
CTAACCTTTAATCTTATCTA+TGG 0.279952 3_3:+82357624 Msa0477900:three_prime_UTR
GCTACATGGACCAGCTTTAA+TGG 0.282319 3_3:-82355636 None:intergenic
GGGGCCCGAGCAGGAGCTTT+TGG 0.283710 3_3:+82355665 Msa0477900:CDS
CTGCGAAGAGAAGTTGGTTT+TGG 0.293313 3_3:-82352260 None:intergenic
ACAGCTCTCTCATAAGTTAT+TGG 0.294717 3_3:-82357486 None:intergenic
AATACCATAGATAAGATTAA+AGG 0.305411 3_3:-82357628 None:intergenic
TGTCTAGTAGATTAAAAGAT+AGG 0.320395 3_3:+82357578 Msa0477900:exon
GCTGCGCTACACATCACTTT+TGG 0.327871 3_3:+82354253 Msa0477900:CDS
CTAAAATACTTACTTGTAAG+AGG 0.330219 3_3:-82355947 None:intergenic
TAACCTTCATCCCGGGCATT+TGG 0.334513 3_3:-82353240 None:intergenic
AGCAATGAACAAACTGCTTA+TGG 0.337413 3_3:+82352525 Msa0477900:CDS
TCTGTTTCATGTTCATCAAT+TGG 0.338860 3_3:+82357550 Msa0477900:CDS
ACGAAAACCAGAAGGCAAAA+TGG 0.343351 3_3:-82356302 None:intergenic
AACCTAAACAGATCAAAGTT+TGG 0.353061 3_3:+82352324 Msa0477900:CDS
CCAAGGGATGCAAGCCCTGC+TGG 0.354906 3_3:+82352965 Msa0477900:CDS
GCACTTGAGGTTGGAACCAC+TGG 0.370337 3_3:+82356495 Msa0477900:CDS
TTATAGATCATTATACTATA+CGG 0.372198 3_3:-82351938 None:intergenic
TAAAGTGGGCGCAAAACTTC+AGG 0.378668 3_3:-82354665 None:intergenic
AACCAAACTTTGATCTGTTT+AGG 0.378767 3_3:-82352326 None:intergenic
AATGTTATGTCCACAGGAAA+TGG 0.379586 3_3:+82354035 Msa0477900:CDS
TCAAGTGCTTCCACTTGCTC+TGG 0.381079 3_3:-82352218 None:intergenic
TTGAGAACATGGGCTACTAT+AGG 0.388073 3_3:+82355895 Msa0477900:CDS
AGGAAGTTAATTACCCTTGC+AGG 0.390715 3_3:-82353866 None:intergenic
AGGATGATGGCAGTGAGTTC+AGG 0.392334 3_3:+82352140 Msa0477900:exon
CCAGCAGGGCTTGCATCCCT+TGG 0.392669 3_3:-82352965 None:intergenic
CAGGCACGTGCAGCCACTCC+AGG 0.395142 3_3:-82353824 None:intergenic
CGACCTGGTGCCAGAGTTGT+TGG 0.396680 3_3:-82354218 None:intergenic
AAAGCTCCTGCTCGGGCCCC+TGG 0.404062 3_3:-82355662 None:intergenic
TGAGAACATGGGCTACTATA+GGG 0.407729 3_3:+82355896 Msa0477900:CDS
GGGTGTCAATTCAGGTCATT+CGG 0.412267 3_3:+82356530 Msa0477900:CDS
CTTGCTTCTGCACTTGAGGT+TGG 0.412761 3_3:+82356486 Msa0477900:CDS
CAGGGTTTCATGTGTATTCA+AGG 0.417991 3_3:+82357435 Msa0477900:intron
GTTGAGTGGGTCCAAATGCC+CGG 0.418997 3_3:+82353229 Msa0477900:CDS
GAATATTGTGTGTGTGCAAT+AGG 0.419784 3_3:-82352027 None:intergenic
TCAGAGAAAGATGCATCAAT+TGG 0.421642 3_3:-82356271 None:intergenic
GCTGGTCCATGTAGCTTGCC+AGG 0.423708 3_3:+82355644 Msa0477900:CDS
GGTGTCAATTCAGGTCATTC+GGG 0.426778 3_3:+82356531 Msa0477900:CDS
CTTCCCCATCCTGTCACACT+TGG 0.428131 3_3:-82354867 None:intergenic
TTTACGTTTGCGAATCAAGC+TGG 0.434930 3_3:+82357117 Msa0477900:CDS
CGAAAACCAGAAGGCAAAAT+GGG 0.440093 3_3:-82356301 None:intergenic
GCACGTGCCTGCGGCCTCGT+GGG 0.440499 3_3:+82353836 Msa0477900:CDS
AATCGATACTTAAATCCCTT+TGG 0.442177 3_3:+82356930 Msa0477900:CDS
AGCTTGCCAGGGGCCCGAGC+AGG 0.444554 3_3:+82355656 Msa0477900:CDS
GTTTGTGCTTCAGGAGTTCC+AGG 0.444785 3_3:-82356729 None:intergenic
CGATCTTGCTTCTGCACTTG+AGG 0.446890 3_3:+82356482 Msa0477900:CDS
GGTGGATCTGTAACAGCTAT+AGG 0.449783 3_3:+82356760 Msa0477900:CDS
ACCACCAAAAGCTCCTGCTC+GGG 0.452836 3_3:-82355669 None:intergenic
CATTGAATTGCTTTACATGC+AGG 0.453193 3_3:+82354064 Msa0477900:CDS
ACCATGAGAGCCTATCTTTG+AGG 0.453750 3_3:-82353983 None:intergenic
CTGCGATATTATCTTGAAGA+TGG 0.455006 3_3:-82356602 None:intergenic
CTGTAACAACATGGAAGCTT+TGG 0.455633 3_3:-82355190 None:intergenic
CGGGCCCCTGGCAAGCTACA+TGG 0.457289 3_3:-82355650 None:intergenic
GAAGGTTACAAGCTGTGAAC+AGG 0.458532 3_3:+82352494 Msa0477900:CDS
AGTTTGTCTGTGACAATTGT+TGG 0.459139 3_3:-82351964 None:intergenic
GCAGGGCTTGCATCCCTTGG+TGG 0.461144 3_3:-82352962 None:intergenic
GACCACCAAAAGCTCCTGCT+CGG 0.462737 3_3:-82355670 None:intergenic
GCTTGCTCAGAGAACAACTA+TGG 0.463260 3_3:+82354703 Msa0477900:CDS
GGTTATCAAGCTTGAGAACA+TGG 0.465661 3_3:+82355884 Msa0477900:CDS
CTATACCTGCTGCATTATCT+GGG 0.466306 3_3:-82357238 None:intergenic
GCAATTTCTCATGGTTCCCC+TGG 0.467349 3_3:+82353806 Msa0477900:CDS
TTGCTGAAATCCTCAAAGAT+AGG 0.468317 3_3:+82353973 Msa0477900:CDS
GATTCAACGAAGCTGTCAAC+GGG 0.469615 3_3:+82355022 Msa0477900:CDS
TTCATCACCTAGCAAGATGA+TGG 0.470764 3_3:+82355110 Msa0477900:CDS
GATGGGCTTCAAATGCAAAC+TGG 0.472343 3_3:-82356584 None:intergenic
GTTGGGTTGGATTTGGAAGA+AGG 0.472578 3_3:+82352107 Msa0477900:five_prime_UTR
CATCTTCCTCAGCTTTGTAG+TGG 0.473433 3_3:+82356202 Msa0477900:intron
GAGTTTCTATCAAAGGCTAC+TGG 0.476434 3_3:+82353199 Msa0477900:CDS
TTCTCATGGTTCCCCTGGAG+TGG 0.477241 3_3:+82353811 Msa0477900:CDS
CTCAGCCAAGTGTGACAGGA+TGG 0.477876 3_3:+82354862 Msa0477900:CDS
TGCACGTGCCTGCGGCCTCG+TGG 0.486826 3_3:+82353835 Msa0477900:CDS
TAGCCTGGTCCGGATTCCAT+TGG 0.487508 3_3:+82353776 Msa0477900:intron
TGGTATTTGTTTATCCAGCA+TGG 0.488354 3_3:+82357458 Msa0477900:CDS
GTTTCTCAGCCAAGTGTGAC+AGG 0.488578 3_3:+82354858 Msa0477900:CDS
GGTTCAATATGAGAGAGAAT+AGG 0.490102 3_3:-82352305 None:intergenic
CAGCCAAGTGTGACAGGATG+GGG 0.491303 3_3:+82354864 Msa0477900:CDS
GCTCTAACAAAATGCGGCAC+TGG 0.492687 3_3:-82354457 None:intergenic
AGGAAGCTTAAAAGAGATGT+TGG 0.492851 3_3:-82351991 None:intergenic
GGTCCAAATGCCCGGGATGA+AGG 0.494227 3_3:+82353237 Msa0477900:CDS
GCGGGAACACAGATCAGAAT+GGG 0.495304 3_3:+82355580 Msa0477900:CDS
GGTATTTGTTTATCCAGCAT+GGG 0.496206 3_3:+82357459 Msa0477900:CDS
CAATAGGAAGGAAGGAAGGA+AGG 0.497327 3_3:-82352011 None:intergenic
TTGTATTTGACTTACCCAGC+AGG 0.497760 3_3:-82352980 None:intergenic
TTTAGCAGAGTTTCTATCAA+AGG 0.497850 3_3:+82353192 Msa0477900:CDS
ATTCCAATGGAATCCGGACC+AGG 0.499148 3_3:-82353779 None:intergenic
CATTTAGAACATCCACAGTT+CGG 0.500936 3_3:-82354016 None:intergenic
TGCGGCACTGGAGGCATACT+AGG 0.502619 3_3:-82354445 None:intergenic
TGCGATATTATCTTGAAGAT+GGG 0.503723 3_3:-82356601 None:intergenic
AGTTATTGGCCTCCCCATGC+TGG 0.504544 3_3:-82357472 None:intergenic
TACTGGAACCGCTGTTGAGT+GGG 0.504776 3_3:+82353216 Msa0477900:CDS
GTTCTAAATGTTATGTCCAC+AGG 0.505259 3_3:+82354029 Msa0477900:CDS
GAGAAGCAGAGGAAAGAAGC+TGG 0.505430 3_3:+82352472 Msa0477900:CDS
AAGATGATGGGACTAAATCT+TGG 0.505856 3_3:+82355123 Msa0477900:CDS
GCAACGATTCCAATGGAATC+CGG 0.506436 3_3:-82353785 None:intergenic
TTTGGCACATAGCACAGAAC+TGG 0.509436 3_3:-82355172 None:intergenic
CTAAATCTTGGTTATAACAA+TGG 0.512081 3_3:+82355135 Msa0477900:CDS
GTGGGCATATGCACCACCTA+TGG 0.512529 3_3:+82357690 Msa0477900:three_prime_UTR
TAGATTAAAAGATAGGATGT+AGG 0.513948 3_3:+82357585 Msa0477900:three_prime_UTR
GGAACCACTGGAAACAAAGC+AGG 0.514125 3_3:+82356507 Msa0477900:CDS
GTGAGTTCAGGATGCAAAGA+TGG 0.514612 3_3:+82352152 Msa0477900:CDS
TCCTCAGCTTTGTAGTGGAG+TGG 0.515145 3_3:+82356207 Msa0477900:intron
CTGAAGCACAAACGCTTACT+CGG 0.516996 3_3:+82356739 Msa0477900:CDS
TCCTCAAAGATAGGCTCTCA+TGG 0.518370 3_3:+82353982 Msa0477900:CDS
TCGTGGGTCTTGAACCTGCA+AGG 0.518555 3_3:+82353852 Msa0477900:CDS
TCAGCAGCTGCCATTAAAGC+TGG 0.518942 3_3:+82355626 Msa0477900:CDS
GCAAGATCGAGTGTGCGGTT+AGG 0.519277 3_3:-82356468 None:intergenic
GGAATCGTTGCAATTTCTCA+TGG 0.524738 3_3:+82353797 Msa0477900:CDS
GTTTAAAGCTTGTTAAGAGA+GGG 0.525379 3_3:-82352066 None:intergenic
TTTAGTCCCATCATCTTGCT+AGG 0.525629 3_3:-82355117 None:intergenic
AACTCGTGTCCGTAGTGGCA+AGG 0.527560 3_3:-82352907 None:intergenic
TGTTGCCTGCGAAGAGAAGT+TGG 0.527712 3_3:-82352266 None:intergenic
CGCATCTGAGTGATGCCAAA+GGG 0.530194 3_3:-82356945 None:intergenic
CGATAACTATTATATTGCTG+TGG 0.530545 3_3:+82357671 Msa0477900:three_prime_UTR
GTTGTATGCGCCAACAACTC+TGG 0.530549 3_3:+82354208 Msa0477900:intron
TGCGGGAACACAGATCAGAA+TGG 0.530863 3_3:+82355579 Msa0477900:CDS
CAAAACCAACTTCTCTTCGC+AGG 0.532329 3_3:+82352261 Msa0477900:CDS
GAAAAGATATTTGATGACAA+TGG 0.533386 3_3:+82357189 Msa0477900:CDS
CTGGTCCATGTAGCTTGCCA+GGG 0.538428 3_3:+82355645 Msa0477900:CDS
AGGTAGCTTAATTAGGATGA+TGG 0.540548 3_3:+82352127 Msa0477900:exon
CTGCATGTAAAGCAATTCAA+TGG 0.540926 3_3:-82354063 None:intergenic
AGCAACCAGAAGTCGCGACC+TGG 0.542154 3_3:-82354233 None:intergenic
TCAGCCAAGTGTGACAGGAT+GGG 0.542398 3_3:+82354863 Msa0477900:CDS
TCAAGATAATATCGCAGCTA+TGG 0.544488 3_3:+82356608 Msa0477900:CDS
CAAGGGATGCAAGCCCTGCT+GGG 0.545537 3_3:+82352966 Msa0477900:CDS
TGATGTCTTGAAGTGCAACC+AGG 0.546715 3_3:-82357161 None:intergenic
TCACTTAACAACACACAGAA+TGG 0.547612 3_3:+82354421 Msa0477900:CDS
CTGATTAGACCCTGTGAAGG+AGG 0.548637 3_3:+82354502 Msa0477900:CDS
GTCAACGGGTTTACAGATGA+TGG 0.550490 3_3:+82355036 Msa0477900:CDS
TGATTAGACCCTGTGAAGGA+GGG 0.553128 3_3:+82354503 Msa0477900:CDS
TTCAAGACCCACGAGGCCGC+AGG 0.553773 3_3:-82353843 None:intergenic
CTAAGCGCACGTAAAGCTGC+AGG 0.555854 3_3:-82354894 None:intergenic
ACAGACGACCCTTGCCACTA+CGG 0.558722 3_3:+82352898 Msa0477900:intron
TGCTAAAGTCTCCTCTGCAA+TGG 0.562754 3_3:-82353176 None:intergenic
GTATTTGTTTATCCAGCATG+GGG 0.564375 3_3:+82357460 Msa0477900:CDS
GTCCTTGTAGAATGTCCCTC+CGG 0.565212 3_3:+82355538 Msa0477900:intron
AGCATGGATGACTCATAAAG+TGG 0.566145 3_3:-82354680 None:intergenic
AGGGATGATATGACAATGCC+TGG 0.566322 3_3:+82355915 Msa0477900:CDS
TTTGGAGGATGGCAGTCTTG+TGG 0.566818 3_3:+82354271 Msa0477900:CDS
AGGGTAATTAACCTTCATCC+CGG 0.569520 3_3:-82353248 None:intergenic
GATAACTATTATATTGCTGT+GGG 0.569712 3_3:+82357672 Msa0477900:three_prime_UTR
AAGTTTGGTTCCAGAACAGA+AGG 0.569991 3_3:+82352339 Msa0477900:CDS
TCTGAGAACCAAAACGCGAA+GGG 0.570540 3_3:-82356689 None:intergenic
TGTGCAATAGGAAGGAAGGA+AGG 0.570640 3_3:-82352015 None:intergenic
AATGGTTCCTCCATTTCCTG+TGG 0.571463 3_3:-82354045 None:intergenic
TGTATTTGACTTACCCAGCA+GGG 0.572571 3_3:-82352979 None:intergenic
GATTAGACCCTGTGAAGGAG+GGG 0.573104 3_3:+82354504 Msa0477900:CDS
AGCACAGAACTGGTGACAGA+TGG 0.574046 3_3:-82355162 None:intergenic
AGAAATTGCAACGATTCCAA+TGG 0.574191 3_3:-82353792 None:intergenic
ACTCGTGTCCGTAGTGGCAA+GGG 0.576336 3_3:-82352906 None:intergenic
GCAGGTGCAGAGAGAAGCAG+AGG 0.578902 3_3:+82352461 Msa0477900:intron
AAAACTTCAGGCACACTCCA+AGG 0.579548 3_3:-82354653 None:intergenic
GGTTTAAAGCTTGTTAAGAG+AGG 0.581152 3_3:-82352067 None:intergenic
TGTGTGTGCAATAGGAAGGA+AGG 0.582207 3_3:-82352019 None:intergenic
GCAGAACTACTTAAGTGTGA+AGG 0.583973 3_3:+82356902 Msa0477900:CDS
AGGCACGTGCAGCCACTCCA+GGG 0.585841 3_3:-82353823 None:intergenic
CTACTGGAACCGCTGTTGAG+TGG 0.586215 3_3:+82353215 Msa0477900:CDS
TTCTGAGAACCAAAACGCGA+AGG 0.588476 3_3:-82356690 None:intergenic
AAGGTACACACCAGAGCAAG+TGG 0.590467 3_3:+82352208 Msa0477900:CDS
CTAACAAAATGCGGCACTGG+AGG 0.590611 3_3:-82354454 None:intergenic
ATTGTGTGTGTGCAATAGGA+AGG 0.591816 3_3:-82352023 None:intergenic
TGGTCTATGTTAGATAGTGA+TGG 0.594042 3_3:+82355060 Msa0477900:CDS
GTGTGACAGGATGGGGAAGG+CGG 0.594930 3_3:+82354871 Msa0477900:CDS
TGGACAATGGAAAGTACGTA+AGG 0.595746 3_3:+82352189 Msa0477900:CDS
TGGTCCATGTAGCTTGCCAG+GGG 0.596219 3_3:+82355646 Msa0477900:CDS
CTTATGAGAGAGCTGTAGCA+TGG 0.596800 3_3:+82357493 Msa0477900:CDS
GCGCCAACAACTCTGGCACC+AGG 0.600039 3_3:+82354215 Msa0477900:CDS
CGTGGGTCTTGAACCTGCAA+GGG 0.600458 3_3:+82353853 Msa0477900:CDS
TTGAGTGGGTCCAAATGCCC+GGG 0.600560 3_3:+82353230 Msa0477900:CDS
GGATTCAACGAAGCTGTCAA+CGG 0.601339 3_3:+82355021 Msa0477900:CDS
GGGTAATTAACCTTCATCCC+GGG 0.604192 3_3:-82353247 None:intergenic
CAGAACTACTTAAGTGTGAA+GGG 0.605820 3_3:+82356903 Msa0477900:CDS
TCATCACCTAGCAAGATGAT+GGG 0.607665 3_3:+82355111 Msa0477900:CDS
TTTGTTTATCCAGCATGGGG+AGG 0.608499 3_3:+82357463 Msa0477900:CDS
GTTATGTCCACAGGAAATGG+AGG 0.608625 3_3:+82354038 Msa0477900:CDS
GCATGGATGACTCATAAAGT+GGG 0.609344 3_3:-82354679 None:intergenic
AGCAAGATAGCAATGGACAA+TGG 0.610868 3_3:+82352176 Msa0477900:CDS
AGCAGAGGAAAGAAGCTGGA+AGG 0.615005 3_3:+82352476 Msa0477900:CDS
GGAGTGGCTGCACGTGCCTG+CGG 0.616801 3_3:+82353827 Msa0477900:CDS
ATTAGACCCTGTGAAGGAGG+GGG 0.617333 3_3:+82354505 Msa0477900:CDS
GGAGTGGACGAGCATGCAGT+TGG 0.618690 3_3:+82356223 Msa0477900:CDS
AGATGGTAGCAAGATAGCAA+TGG 0.621096 3_3:+82352169 Msa0477900:CDS
AGGTGATGAATTCACAAGAA+GGG 0.622669 3_3:-82355097 None:intergenic
CATACCTCTTGAATCTAGCA+CGG 0.625244 3_3:+82356327 Msa0477900:CDS
CTCACAACTCGTGTCCGTAG+TGG 0.627252 3_3:-82352912 None:intergenic
CGGTCAGCAGCATCCACCAA+GGG 0.631326 3_3:+82352949 Msa0477900:CDS
TAGGTGATGAATTCACAAGA+AGG 0.633200 3_3:-82355098 None:intergenic
GGCACGTGCAGCCACTCCAG+GGG 0.635325 3_3:-82353822 None:intergenic
AATGAACAAACTGCTTATGG+AGG 0.636215 3_3:+82352528 Msa0477900:CDS
ATCTAAGAAGAATAGCCGGA+GGG 0.640469 3_3:-82355553 None:intergenic
CCGCATCTGAGTGATGCCAA+AGG 0.646305 3_3:-82356946 None:intergenic
ACGGGTTTACAGATGATGGA+TGG 0.646531 3_3:+82355040 Msa0477900:CDS
CTGAGAACCAAAACGCGAAG+GGG 0.646857 3_3:-82356688 None:intergenic
TGTTCTCTGAGCAAGCAGCA+TGG 0.647938 3_3:-82354696 None:intergenic
ATACCTGCTGCATTATCTGG+GGG 0.648878 3_3:-82357236 None:intergenic
AAAAGAAATGAGTCCATAGG+TGG 0.649262 3_3:-82357703 None:intergenic
GTTATCAAGCTTGAGAACAT+GGG 0.649916 3_3:+82355885 Msa0477900:CDS
TATACCTGCTGCATTATCTG+GGG 0.653102 3_3:-82357237 None:intergenic
CAAGTGTGACAGGATGGGGA+AGG 0.654511 3_3:+82354868 Msa0477900:CDS
TGTAAGAGGAAAATATCACC+AGG 0.656562 3_3:-82355933 None:intergenic
CTTGCCGTGCTAGATTCAAG+AGG 0.658066 3_3:-82356331 None:intergenic
ACTTCAGCTCTAACAAAATG+CGG 0.660310 3_3:-82354463 None:intergenic
GGACACGAGTTGTGAGTCAG+TGG 0.661062 3_3:+82352919 Msa0477900:CDS
GATGTCTTGAAGTGCAACCA+GGG 0.661753 3_3:-82357160 None:intergenic
GAACCACTGGAAACAAAGCA+GGG 0.663545 3_3:+82356508 Msa0477900:CDS
GCGGTCAGCAGCATCCACCA+AGG 0.664352 3_3:+82352948 Msa0477900:CDS
GGTATGATACGAAAACCAGA+AGG 0.665928 3_3:-82356310 None:intergenic
GGTCTAATCAGATAACCGCT+AGG 0.667041 3_3:-82354490 None:intergenic
AATCTAAGAAGAATAGCCGG+AGG 0.667152 3_3:-82355554 None:intergenic
CCTTTGGCATCACTCAGATG+CGG 0.670379 3_3:+82356946 Msa0477900:CDS
TTCTGTAATACAGTTCATGG+AGG 0.670808 3_3:+82355863 Msa0477900:intron
TATCTGATTAGACCCTGTGA+AGG 0.676545 3_3:+82354499 Msa0477900:CDS
GAATTATACCTGTAACAACA+TGG 0.676552 3_3:-82355199 None:intergenic
TGTGAGTCAGTGGTAACAAG+CGG 0.679277 3_3:+82352929 Msa0477900:CDS
AAGCACAAACGCTTACTCGG+TGG 0.679968 3_3:+82356742 Msa0477900:CDS
CAGAAGCAAGATCGAGTGTG+CGG 0.682497 3_3:-82356473 None:intergenic
GTATCGTGATTGCCGAACTG+TGG 0.685847 3_3:+82354004 Msa0477900:CDS
AAAACGTGTTCTCATACACA+AGG 0.688378 3_3:-82352582 None:intergenic
ACCACTGGAAACAAAGCAGG+GGG 0.697026 3_3:+82356510 Msa0477900:CDS
TGTGCTTCAGGAGTTCCAGG+TGG 0.700188 3_3:-82356726 None:intergenic
CATTTGGACCCACTCAACAG+CGG 0.704277 3_3:-82353224 None:intergenic
TGACATGCTTGAAACCACCC+TGG 0.704585 3_3:+82357143 Msa0477900:CDS
GGTTTCATGTGTATTCAAGG+TGG 0.704702 3_3:+82357438 Msa0477900:CDS
AACCACTGGAAACAAAGCAG+GGG 0.710996 3_3:+82356509 Msa0477900:CDS
AGAGCTGAAGTGTTGCCTAG+CGG 0.716290 3_3:+82354475 Msa0477900:CDS
GTCTTGAAGTGCAACCAGGG+TGG 0.726402 3_3:-82357157 None:intergenic
TTGCAGGTTCAAGACCCACG+AGG 0.774422 3_3:-82353850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTATATTTATAATTTATT+TGG + chr3_3:82352359-82352378 Msa0477900:intron 10.0%
!! TTAATAAATTAATAATGAAG+AGG - chr3_3:82353893-82353912 None:intergenic 10.0%
!!! TTTTAACAATATCAATATTT+AGG + chr3_3:82354387-82354406 Msa0477900:intron 10.0%
!!! TATTTTATAGAATAAGTAAA+AGG - chr3_3:82354581-82354600 None:intergenic 10.0%
!! TTATAGATCATTATACTATA+CGG - chr3_3:82351941-82351960 None:intergenic 15.0%
!! AATTTATTTGGCAAATTAAA+AGG + chr3_3:82352371-82352390 Msa0477900:intron 15.0%
!! ATTTATTTGGCAAATTAAAA+GGG + chr3_3:82352372-82352391 Msa0477900:intron 15.0%
!!! TTAAAATAATGATTTTAGCT+AGG - chr3_3:82352780-82352799 None:intergenic 15.0%
!!! TAGCTAAAATCATTATTTTA+AGG + chr3_3:82352779-82352798 Msa0477900:intron 15.0%
!! TAATGGAATACTATTATTTA+TGG + chr3_3:82353116-82353135 Msa0477900:intron 15.0%
!! AAAAATAGTGAATGTTATTA+AGG - chr3_3:82353409-82353428 None:intergenic 15.0%
!! ATATAATATATAGTACTCAA+GGG - chr3_3:82355300-82355319 None:intergenic 15.0%
!! AATATAATATATAGTACTCA+AGG - chr3_3:82355301-82355320 None:intergenic 15.0%
!!! TATTTTTTCTGATAAGAATT+TGG + chr3_3:82357005-82357024 Msa0477900:intron 15.0%
!!! TAACGATATATGAAATATTT+TGG + chr3_3:82357410-82357429 Msa0477900:intron 15.0%
!!! AAAGAAGATTATTTTGAGTT+GGG + chr3_3:82352090-82352109 Msa0477900:five_prime_UTR 20.0%
!!! TAATTACATTTTGTGTATGT+TGG - chr3_3:82352612-82352631 None:intergenic 20.0%
!! ATGATCATAAAAGAAATGTT+AGG + chr3_3:82352723-82352742 Msa0477900:intron 20.0%
!! AGTAAAATAGCAAAATACAA+GGG - chr3_3:82353007-82353026 None:intergenic 20.0%
!! TAGTAAAATAGCAAAATACA+AGG - chr3_3:82353008-82353027 None:intergenic 20.0%
!! AGTATAGTACTATAGTTATA+TGG - chr3_3:82353044-82353063 None:intergenic 20.0%
!! ATATAACTATAGTACTATAC+TGG + chr3_3:82353043-82353062 Msa0477900:intron 20.0%
!! AAAGAAAGTAAAAGAAAGTA+GGG - chr3_3:82353270-82353289 None:intergenic 20.0%
!! TAAAGAAAGTAAAAGAAAGT+AGG - chr3_3:82353271-82353290 None:intergenic 20.0%
!! AATTAAGAAGGTGAAATAAA+AGG - chr3_3:82353294-82353313 None:intergenic 20.0%
!! ATAAAGGGAATAAATTAAGA+AGG - chr3_3:82353306-82353325 None:intergenic 20.0%
!! TACTATGTAATGCAAATAAA+GGG - chr3_3:82353321-82353340 None:intergenic 20.0%
!! ATCTCATTAGTGTTAATTAA+AGG + chr3_3:82353449-82353468 Msa0477900:intron 20.0%
!!! ATTGAAAGATTCTTTCATTT+TGG + chr3_3:82353509-82353528 Msa0477900:intron 20.0%
!!! TTGAAAGATTCTTTCATTTT+GGG + chr3_3:82353510-82353529 Msa0477900:intron 20.0%
!! ATAAAGGTAAAAAATCAATC+AGG - chr3_3:82353585-82353604 None:intergenic 20.0%
!! AAGAAAAATTACATCACATA+AGG - chr3_3:82353616-82353635 None:intergenic 20.0%
!!! AAAAGAAAATATAAGAGTGT+TGG - chr3_3:82353699-82353718 None:intergenic 20.0%
!! AACATTTACATCACATAATT+AGG - chr3_3:82353722-82353741 None:intergenic 20.0%
!! TAAATTAATAATGAAGAGGA+AGG - chr3_3:82353889-82353908 None:intergenic 20.0%
!! ATGATCAACAATATGAATTA+TGG - chr3_3:82354533-82354552 None:intergenic 20.0%
!! AACTGAAAGTTAAGTAAATA+TGG - chr3_3:82354606-82354625 None:intergenic 20.0%
!! TTTACCTTCAAATCTATATA+TGG - chr3_3:82354754-82354773 None:intergenic 20.0%
!!! TTACTTCCTTTTTATTTTAC+AGG + chr3_3:82354998-82355017 Msa0477900:intron 20.0%
!!! TACTTCCTTTTTATTTTACA+GGG + chr3_3:82354999-82355018 Msa0477900:intron 20.0%
!! AAATACATGTAGTAAATGTT+TGG - chr3_3:82355488-82355507 None:intergenic 20.0%
!!! AATTTAAATATGATTTTGGC+AGG + chr3_3:82357083-82357102 Msa0477900:intron 20.0%
!! AATACCATAGATAAGATTAA+AGG - chr3_3:82357631-82357650 None:intergenic 20.0%
!! TTAATCTTATCTATGGTATT+TGG + chr3_3:82357631-82357650 Msa0477900:three_prime_UTR 20.0%
! CAACTCAAAATAATCTTCTT+TGG - chr3_3:82352091-82352110 None:intergenic 25.0%
!!! CAAAGAAGATTATTTTGAGT+TGG + chr3_3:82352089-82352108 Msa0477900:five_prime_UTR 25.0%
! TATAAATATACCTTCTGTTC+TGG - chr3_3:82352352-82352371 None:intergenic 25.0%
!!! GTGTTGTTTATTAATTTTGC+AGG + chr3_3:82352443-82352462 Msa0477900:intron 25.0%
! GTACTATGTAATGCAAATAA+AGG - chr3_3:82353322-82353341 None:intergenic 25.0%
!! AGTAAAAAAAGAAGTTGGTT+TGG - chr3_3:82353373-82353392 None:intergenic 25.0%
!! GAATGTTATTAAGGTTTGTT+TGG - chr3_3:82353400-82353419 None:intergenic 25.0%
!!! TTCACTATTTTTAACTGCAT+TGG + chr3_3:82353417-82353436 Msa0477900:intron 25.0%
!!! TATTTTTAACTGCATTGGTA+TGG + chr3_3:82353422-82353441 Msa0477900:intron 25.0%
!!! AATTTTTTCGTCAACTAAGT+CGG + chr3_3:82353536-82353555 Msa0477900:intron 25.0%
! ATTACATCACATAAGGAAAA+GGG - chr3_3:82353609-82353628 None:intergenic 25.0%
! AATTACATCACATAAGGAAA+AGG - chr3_3:82353610-82353629 None:intergenic 25.0%
! TTCACTCAATGCATATTAAT+GGG - chr3_3:82353926-82353945 None:intergenic 25.0%
! TCTTAGTCACAATAATAACT+TGG + chr3_3:82354124-82354143 Msa0477900:intron 25.0%
! TTCAAATCTATATATGGCAA+TGG - chr3_3:82354748-82354767 None:intergenic 25.0%
! ATTGCCATATATAGATTTGA+AGG + chr3_3:82354747-82354766 Msa0477900:intron 25.0%
!!! ACTTCCTTTTTATTTTACAG+GGG + chr3_3:82355000-82355019 Msa0477900:intron 25.0%
! CTAAATCTTGGTTATAACAA+TGG + chr3_3:82355135-82355154 Msa0477900:CDS 25.0%
!! TTAAGTTTTACTAGTGTGTT+TGG + chr3_3:82355319-82355338 Msa0477900:intron 25.0%
! TTGGAATAGTACTAAGTTAT+TGG + chr3_3:82355338-82355357 Msa0477900:intron 25.0%
!! TGATTTTACTGATGTCAAAA+TGG - chr3_3:82355433-82355452 None:intergenic 25.0%
! AAAAATCTAAGAAGAATAGC+CGG - chr3_3:82355560-82355579 None:intergenic 25.0%
!! CTATTCTTCTTAGATTTTTG+CGG + chr3_3:82355561-82355580 Msa0477900:CDS 25.0%
!! TATTCTTCTTAGATTTTTGC+GGG + chr3_3:82355562-82355581 Msa0477900:CDS 25.0%
! ATGTAAGAGATAACAAAATC+AGG - chr3_3:82355751-82355770 None:intergenic 25.0%
! CTAAAATACTTACTTGTAAG+AGG - chr3_3:82355950-82355969 None:intergenic 25.0%
! AATAGATATGTTCAAGAGAA+TGG - chr3_3:82355977-82355996 None:intergenic 25.0%
! ATGATGATCTTAATCATGTT+CGG + chr3_3:82356842-82356861 Msa0477900:intron 25.0%
!! TTTTCTGATAAGAATTTGGT+TGG + chr3_3:82357009-82357028 Msa0477900:intron 25.0%
!! GTCATCAAATATCTTTTCTA+GGG - chr3_3:82357187-82357206 None:intergenic 25.0%
!! TGTCATCAAATATCTTTTCT+AGG - chr3_3:82357188-82357207 None:intergenic 25.0%
!! GAAAAGATATTTGATGACAA+TGG + chr3_3:82357189-82357208 Msa0477900:CDS 25.0%
!! AAAGAGTATGTTGATGTTAA+CGG + chr3_3:82357279-82357298 Msa0477900:intron 25.0%
!!! TATATGAAATATTTTGGTGC+AGG + chr3_3:82357416-82357435 Msa0477900:intron 25.0%
!!! ATATGAAATATTTTGGTGCA+GGG + chr3_3:82357417-82357436 Msa0477900:intron 25.0%
! TGTCTAGTAGATTAAAAGAT+AGG + chr3_3:82357578-82357597 Msa0477900:exon 25.0%
! TAGATTAAAAGATAGGATGT+AGG + chr3_3:82357585-82357604 Msa0477900:three_prime_UTR 25.0%
! CTAACCTTTAATCTTATCTA+TGG + chr3_3:82357624-82357643 Msa0477900:three_prime_UTR 25.0%
! GATAACTATTATATTGCTGT+GGG + chr3_3:82357672-82357691 Msa0477900:three_prime_UTR 25.0%
!! GTTTAAAGCTTGTTAAGAGA+GGG - chr3_3:82352069-82352088 None:intergenic 30.0%
!!! AAGATTATTTTGAGTTGGGT+TGG + chr3_3:82352094-82352113 Msa0477900:five_prime_UTR 30.0%
AACCTAAACAGATCAAAGTT+TGG + chr3_3:82352324-82352343 Msa0477900:CDS 30.0%
AACCAAACTTTGATCTGTTT+AGG - chr3_3:82352329-82352348 None:intergenic 30.0%
! TTACATTTTGTGTATGTTGG+CGG - chr3_3:82352609-82352628 None:intergenic 30.0%
GCTATAGAAAGAAGAATATG+AGG - chr3_3:82352636-82352655 None:intergenic 30.0%
!! TAAATTTTGCCATTTGAGTC+TGG + chr3_3:82352746-82352765 Msa0477900:intron 30.0%
TTTAGCAGAGTTTCTATCAA+AGG + chr3_3:82353192-82353211 Msa0477900:CDS 30.0%
GACTTAGTTGACGAAAAAAT+TGG - chr3_3:82353537-82353556 None:intergenic 30.0%
! ACATAAGGAAAAGGGTATAA+AGG - chr3_3:82353601-82353620 None:intergenic 30.0%
! ATCCTTATACTCAAGACTTT+TGG + chr3_3:82353657-82353676 Msa0477900:intron 30.0%
TCAATGCATATTAATGGGAT+TGG - chr3_3:82353921-82353940 None:intergenic 30.0%
GTTCACTCAATGCATATTAA+TGG - chr3_3:82353927-82353946 None:intergenic 30.0%
AAATTTGTGATGTCCTTTAC+AGG + chr3_3:82353950-82353969 Msa0477900:intron 30.0%
CATGTTAGATTTCGTTAATG+TGG - chr3_3:82354172-82354191 None:intergenic 30.0%
TACATGTTTATGCACCTATA+TGG + chr3_3:82354309-82354328 Msa0477900:intron 30.0%
TGTTAAACATGCAACCATAT+AGG - chr3_3:82354326-82354345 None:intergenic 30.0%
!! AATATCAGAGTTTGAGTTGA+AGG - chr3_3:82354358-82354377 None:intergenic 30.0%
! TGTTGATCATATGCTTTTAG+AGG + chr3_3:82354543-82354562 Msa0477900:CDS 30.0%
AGATTTGAAGGTAAACATGT+TGG + chr3_3:82354759-82354778 Msa0477900:intron 30.0%
TTTAGGCTTTACGTCATTTA+AGG + chr3_3:82354820-82354839 Msa0477900:intron 30.0%
AATGCAATTGTGAAGGAAAA+TGG - chr3_3:82354942-82354961 None:intergenic 30.0%
TAGTAACAATGCAATTGTGA+AGG - chr3_3:82354949-82354968 None:intergenic 30.0%
GAATCCCCTGTAAAATAAAA+AGG - chr3_3:82355007-82355026 None:intergenic 30.0%
GAATTATACCTGTAACAACA+TGG - chr3_3:82355202-82355221 None:intergenic 30.0%
TTCTTAGTACTCACTACTTA+TGG + chr3_3:82355229-82355248 Msa0477900:intron 30.0%
ATATATAGTACTCAAGGGAA+AGG - chr3_3:82355295-82355314 None:intergenic 30.0%
TACTAAGTTATTGGTGTGTT+TGG + chr3_3:82355347-82355366 Msa0477900:intron 30.0%
! ACAAAATAATAGCTTGTGGT+TGG - chr3_3:82355403-82355422 None:intergenic 30.0%
AGCTACAAAATAATAGCTTG+TGG - chr3_3:82355407-82355426 None:intergenic 30.0%
TTGACATCAGTAAAATCACT+TGG + chr3_3:82355435-82355454 Msa0477900:intron 30.0%
! TCATACATGTTTTTCGTCTT+TGG + chr3_3:82355815-82355834 Msa0477900:intron 30.0%
! GTTTTCTGTAATACAGTTCA+TGG + chr3_3:82355860-82355879 Msa0477900:intron 30.0%
CTCTCAATTGCAATTATAGA+AGG - chr3_3:82356047-82356066 None:intergenic 30.0%
CTGATTATAGAAGATGCTTT+CGG + chr3_3:82356145-82356164 Msa0477900:intron 30.0%
TGCGATATTATCTTGAAGAT+GGG - chr3_3:82356604-82356623 None:intergenic 30.0%
TGATGATCTTAATCATGTTC+GGG + chr3_3:82356843-82356862 Msa0477900:intron 30.0%
AATCGATACTTAAATCCCTT+TGG + chr3_3:82356930-82356949 Msa0477900:CDS 30.0%
! TTGATTCGCAAACGTAAAAA+CGG - chr3_3:82357115-82357134 None:intergenic 30.0%
! AAGAGTATGTTGATGTTAAC+GGG + chr3_3:82357280-82357299 Msa0477900:intron 30.0%
TCTGTTTCATGTTCATCAAT+TGG + chr3_3:82357550-82357569 Msa0477900:CDS 30.0%
CGATAACTATTATATTGCTG+TGG + chr3_3:82357671-82357690 Msa0477900:three_prime_UTR 30.0%
CTAAAAAGAAATGAGTCCAT+AGG - chr3_3:82357709-82357728 None:intergenic 30.0%
AGTTTGTCTGTGACAATTGT+TGG - chr3_3:82351967-82351986 None:intergenic 35.0%
AGGAAGCTTAAAAGAGATGT+TGG - chr3_3:82351994-82352013 None:intergenic 35.0%
GAATATTGTGTGTGTGCAAT+AGG - chr3_3:82352030-82352049 None:intergenic 35.0%
!! GGTTTAAAGCTTGTTAAGAG+AGG - chr3_3:82352070-82352089 None:intergenic 35.0%
!!! ATTTTGAGTTGGGTTGGATT+TGG + chr3_3:82352100-82352119 Msa0477900:five_prime_UTR 35.0%
TGGAAGAAGGTAGCTTAATT+AGG + chr3_3:82352120-82352139 Msa0477900:five_prime_UTR 35.0%
AGGTAGCTTAATTAGGATGA+TGG + chr3_3:82352127-82352146 Msa0477900:exon 35.0%
!!! AAGTTGGTTTTGGACATTCA+TGG - chr3_3:82352253-82352272 None:intergenic 35.0%
GGTTCAATATGAGAGAGAAT+AGG - chr3_3:82352308-82352327 None:intergenic 35.0%
AGCAATGAACAAACTGCTTA+TGG + chr3_3:82352525-82352544 Msa0477900:CDS 35.0%
AATGAACAAACTGCTTATGG+AGG + chr3_3:82352528-82352547 Msa0477900:CDS 35.0%
AAAACGTGTTCTCATACACA+AGG - chr3_3:82352585-82352604 None:intergenic 35.0%
TACTATCCAACGACATACAT+TGG - chr3_3:82353098-82353117 None:intergenic 35.0%
TGTATGTCGTTGGATAGTAA+TGG + chr3_3:82353099-82353118 Msa0477900:intron 35.0%
GCAGCAGTAAAAAAAGAAGT+TGG - chr3_3:82353378-82353397 None:intergenic 35.0%
AGAAATTGCAACGATTCCAA+TGG - chr3_3:82353795-82353814 None:intergenic 35.0%
TTGCTGAAATCCTCAAAGAT+AGG + chr3_3:82353973-82353992 Msa0477900:CDS 35.0%
! CATTTAGAACATCCACAGTT+CGG - chr3_3:82354019-82354038 None:intergenic 35.0%
! GTTCTAAATGTTATGTCCAC+AGG + chr3_3:82354029-82354048 Msa0477900:CDS 35.0%
AATGTTATGTCCACAGGAAA+TGG + chr3_3:82354035-82354054 Msa0477900:CDS 35.0%
CTGCATGTAAAGCAATTCAA+TGG - chr3_3:82354066-82354085 None:intergenic 35.0%
CATTGAATTGCTTTACATGC+AGG + chr3_3:82354064-82354083 Msa0477900:CDS 35.0%
!! GAGTTTGAGTTGAAGGATAT+AGG - chr3_3:82354351-82354370 None:intergenic 35.0%
TCACTTAACAACACACAGAA+TGG + chr3_3:82354421-82354440 Msa0477900:CDS 35.0%
! ACTTCAGCTCTAACAAAATG+CGG - chr3_3:82354466-82354485 None:intergenic 35.0%
!! TGATTCTTTGAAATCAGCCT+TGG + chr3_3:82354636-82354655 Msa0477900:intron 35.0%
TGGTCTATGTTAGATAGTGA+TGG + chr3_3:82355060-82355079 Msa0477900:CDS 35.0%
AGGTGATGAATTCACAAGAA+GGG - chr3_3:82355100-82355119 None:intergenic 35.0%
TAGGTGATGAATTCACAAGA+AGG - chr3_3:82355101-82355120 None:intergenic 35.0%
!! AAGATGATGGGACTAAATCT+TGG + chr3_3:82355123-82355142 Msa0477900:CDS 35.0%
ACCAAATGACTTCTGATACT+CGG + chr3_3:82355377-82355396 Msa0477900:intron 35.0%
ACTGTATTACAGAAAACCAC+TGG - chr3_3:82355857-82355876 None:intergenic 35.0%
TTCTGTAATACAGTTCATGG+AGG + chr3_3:82355863-82355882 Msa0477900:intron 35.0%
GTTATCAAGCTTGAGAACAT+GGG + chr3_3:82355885-82355904 Msa0477900:CDS 35.0%
TGTAAGAGGAAAATATCACC+AGG - chr3_3:82355936-82355955 None:intergenic 35.0%
TTGAGAGAAAACACTTCCAT+TGG + chr3_3:82356060-82356079 Msa0477900:intron 35.0%
TAGTACTAGTGCATTTCCAA+TGG - chr3_3:82356079-82356098 None:intergenic 35.0%
AATAGTTAGCTATGCACATG+AGG - chr3_3:82356172-82356191 None:intergenic 35.0%
TCAGAGAAAGATGCATCAAT+TGG - chr3_3:82356274-82356293 None:intergenic 35.0%
CTGCGATATTATCTTGAAGA+TGG - chr3_3:82356605-82356624 None:intergenic 35.0%
TCAAGATAATATCGCAGCTA+TGG + chr3_3:82356608-82356627 Msa0477900:CDS 35.0%
TGCTGTTATGCATAGTGAAA+TGG - chr3_3:82356806-82356825 None:intergenic 35.0%
CAGAACTACTTAAGTGTGAA+GGG + chr3_3:82356903-82356922 Msa0477900:CDS 35.0%
TGATTCGCAAACGTAAAAAC+GGG - chr3_3:82357114-82357133 None:intergenic 35.0%
! ATGTTGATGTTAACGGGTAT+TGG + chr3_3:82357286-82357305 Msa0477900:intron 35.0%
! TGTTGATGTTAACGGGTATT+GGG + chr3_3:82357287-82357306 Msa0477900:intron 35.0%
AAAATGTATGCGACGAAGTT+TGG + chr3_3:82357336-82357355 Msa0477900:intron 35.0%
TGGTATTTGTTTATCCAGCA+TGG + chr3_3:82357458-82357477 Msa0477900:CDS 35.0%
GGTATTTGTTTATCCAGCAT+GGG + chr3_3:82357459-82357478 Msa0477900:CDS 35.0%
GTATTTGTTTATCCAGCATG+GGG + chr3_3:82357460-82357479 Msa0477900:CDS 35.0%
ACAGCTCTCTCATAAGTTAT+TGG - chr3_3:82357489-82357508 None:intergenic 35.0%
AAAAGAAATGAGTCCATAGG+TGG - chr3_3:82357706-82357725 None:intergenic 35.0%
ATTGTGTGTGTGCAATAGGA+AGG - chr3_3:82352026-82352045 None:intergenic 40.0%
AGATGGTAGCAAGATAGCAA+TGG + chr3_3:82352169-82352188 Msa0477900:CDS 40.0%
AGCAAGATAGCAATGGACAA+TGG + chr3_3:82352176-82352195 Msa0477900:CDS 40.0%
! TGGACAATGGAAAGTACGTA+AGG + chr3_3:82352189-82352208 Msa0477900:CDS 40.0%
! AAGTTTGGTTCCAGAACAGA+AGG + chr3_3:82352339-82352358 Msa0477900:CDS 40.0%
! ACTTTGATGATCTCAGCTCA+AGG - chr3_3:82352690-82352709 None:intergenic 40.0%
GAGCTGAGATCATCAAAGTT+AGG + chr3_3:82352691-82352710 Msa0477900:intron 40.0%
! TGTATTTGACTTACCCAGCA+GGG - chr3_3:82352982-82353001 None:intergenic 40.0%
! TTGTATTTGACTTACCCAGC+AGG - chr3_3:82352983-82353002 None:intergenic 40.0%
ACTGATCCAATGTATGTCGT+TGG + chr3_3:82353089-82353108 Msa0477900:intron 40.0%
GAGTTTCTATCAAAGGCTAC+TGG + chr3_3:82353199-82353218 Msa0477900:CDS 40.0%
AGGGTAATTAACCTTCATCC+CGG - chr3_3:82353251-82353270 None:intergenic 40.0%
GGCCAAAAGTCTTGAGTATA+AGG - chr3_3:82353662-82353681 None:intergenic 40.0%
! ATACTCAAGACTTTTGGCCA+AGG + chr3_3:82353663-82353682 Msa0477900:intron 40.0%
!! GTGTTGGTTTATGTAGTCCT+TGG - chr3_3:82353683-82353702 None:intergenic 40.0%
! GTGATGAATGTTTTGTAGCC+TGG + chr3_3:82353761-82353780 Msa0477900:intron 40.0%
GGAATCGTTGCAATTTCTCA+TGG + chr3_3:82353797-82353816 Msa0477900:CDS 40.0%
AGGAAGTTAATTACCCTTGC+AGG - chr3_3:82353869-82353888 None:intergenic 40.0%
AGGATTTCAGCAACCTGTAA+AGG - chr3_3:82353966-82353985 None:intergenic 40.0%
!! TACACATCACTTTTGGAGGA+TGG + chr3_3:82354260-82354279 Msa0477900:CDS 40.0%
TATCTGATTAGACCCTGTGA+AGG + chr3_3:82354499-82354518 Msa0477900:CDS 40.0%
GCATGGATGACTCATAAAGT+GGG - chr3_3:82354682-82354701 None:intergenic 40.0%
AGCATGGATGACTCATAAAG+TGG - chr3_3:82354683-82354702 None:intergenic 40.0%
! TAACCCTGCAATTGTCGTTT+AGG + chr3_3:82354803-82354822 Msa0477900:intron 40.0%
AAGCCTAAACGACAATTGCA+GGG - chr3_3:82354809-82354828 None:intergenic 40.0%
AAAGCCTAAACGACAATTGC+AGG - chr3_3:82354810-82354829 None:intergenic 40.0%
TTCATCACCTAGCAAGATGA+TGG + chr3_3:82355110-82355129 Msa0477900:CDS 40.0%
TCATCACCTAGCAAGATGAT+GGG + chr3_3:82355111-82355130 Msa0477900:CDS 40.0%
TTTAGTCCCATCATCTTGCT+AGG - chr3_3:82355120-82355139 None:intergenic 40.0%
CTGTAACAACATGGAAGCTT+TGG - chr3_3:82355193-82355212 None:intergenic 40.0%
CAAAGCTTCCATGTTGTTAC+AGG + chr3_3:82355191-82355210 Msa0477900:CDS 40.0%
! TATCAGAAGTCATTTGGTGG+TGG - chr3_3:82355375-82355394 None:intergenic 40.0%
GAGTATCAGAAGTCATTTGG+TGG - chr3_3:82355378-82355397 None:intergenic 40.0%
ATCTAAGAAGAATAGCCGGA+GGG - chr3_3:82355556-82355575 None:intergenic 40.0%
AATCTAAGAAGAATAGCCGG+AGG - chr3_3:82355557-82355576 None:intergenic 40.0%
CTTGTAGACTAACAAACCAG+TGG + chr3_3:82355838-82355857 Msa0477900:intron 40.0%
GGTTATCAAGCTTGAGAACA+TGG + chr3_3:82355884-82355903 Msa0477900:CDS 40.0%
! TTGAGAACATGGGCTACTAT+AGG + chr3_3:82355895-82355914 Msa0477900:CDS 40.0%
! TGAGAACATGGGCTACTATA+GGG + chr3_3:82355896-82355915 Msa0477900:CDS 40.0%
CGAAAACCAGAAGGCAAAAT+GGG - chr3_3:82356304-82356323 None:intergenic 40.0%
ACGAAAACCAGAAGGCAAAA+TGG - chr3_3:82356305-82356324 None:intergenic 40.0%
GGTATGATACGAAAACCAGA+AGG - chr3_3:82356313-82356332 None:intergenic 40.0%
CATACCTCTTGAATCTAGCA+CGG + chr3_3:82356327-82356346 Msa0477900:CDS 40.0%
GAAATTCTTCCGCTTCTTGT+TGG + chr3_3:82356394-82356413 Msa0477900:intron 40.0%
ATCATCACTCCAACAAGAAG+CGG - chr3_3:82356406-82356425 None:intergenic 40.0%
CTTTGTCTTATGTACGATGC+AGG + chr3_3:82356434-82356453 Msa0477900:intron 40.0%
! AATGCTTTTCACTTACCACC+TGG + chr3_3:82356711-82356730 Msa0477900:CDS 40.0%
TGATCTTAATCATGTTCGGG+CGG + chr3_3:82356846-82356865 Msa0477900:intron 40.0%
GCAGAACTACTTAAGTGTGA+AGG + chr3_3:82356902-82356921 Msa0477900:CDS 40.0%
! GGTTCTGTGTTGCTCTTTAA+AGG + chr3_3:82356967-82356986 Msa0477900:CDS 40.0%
TTTACGTTTGCGAATCAAGC+TGG + chr3_3:82357117-82357136 Msa0477900:CDS 40.0%
TATACCTGCTGCATTATCTG+GGG - chr3_3:82357240-82357259 None:intergenic 40.0%
CTATACCTGCTGCATTATCT+GGG - chr3_3:82357241-82357260 None:intergenic 40.0%
ACTATACCTGCTGCATTATC+TGG - chr3_3:82357242-82357261 None:intergenic 40.0%
!! TGTTAACGGGTATTGGGAAA+TGG + chr3_3:82357293-82357312 Msa0477900:intron 40.0%
CAGGGTTTCATGTGTATTCA+AGG + chr3_3:82357435-82357454 Msa0477900:intron 40.0%
GGTTTCATGTGTATTCAAGG+TGG + chr3_3:82357438-82357457 Msa0477900:CDS 40.0%
CAATAGGAAGGAAGGAAGGA+AGG - chr3_3:82352014-82352033 None:intergenic 45.0%
TGTGCAATAGGAAGGAAGGA+AGG - chr3_3:82352018-82352037 None:intergenic 45.0%
TGTGTGTGCAATAGGAAGGA+AGG - chr3_3:82352022-82352041 None:intergenic 45.0%
!! GTTGGGTTGGATTTGGAAGA+AGG + chr3_3:82352107-82352126 Msa0477900:five_prime_UTR 45.0%
GTGAGTTCAGGATGCAAAGA+TGG + chr3_3:82352152-82352171 Msa0477900:CDS 45.0%
!! CTGCGAAGAGAAGTTGGTTT+TGG - chr3_3:82352263-82352282 None:intergenic 45.0%
CAAAACCAACTTCTCTTCGC+AGG + chr3_3:82352261-82352280 Msa0477900:CDS 45.0%
GAAGGTTACAAGCTGTGAAC+AGG + chr3_3:82352494-82352513 Msa0477900:CDS 45.0%
GCAACTTGACCAGACTCAAA+TGG - chr3_3:82352758-82352777 None:intergenic 45.0%
TGTGAGTCAGTGGTAACAAG+CGG + chr3_3:82352929-82352948 Msa0477900:CDS 45.0%
! CAGACTTTTGTCCATTGCAG+AGG + chr3_3:82353165-82353184 Msa0477900:intron 45.0%
TGCTAAAGTCTCCTCTGCAA+TGG - chr3_3:82353179-82353198 None:intergenic 45.0%
GGGTAATTAACCTTCATCCC+GGG - chr3_3:82353250-82353269 None:intergenic 45.0%
! GAATGTTTTGTAGCCTGGTC+CGG + chr3_3:82353766-82353785 Msa0477900:intron 45.0%
GCAACGATTCCAATGGAATC+CGG - chr3_3:82353788-82353807 None:intergenic 45.0%
TCCTCAAAGATAGGCTCTCA+TGG + chr3_3:82353982-82354001 Msa0477900:CDS 45.0%
ACCATGAGAGCCTATCTTTG+AGG - chr3_3:82353986-82354005 None:intergenic 45.0%
GTTATGTCCACAGGAAATGG+AGG + chr3_3:82354038-82354057 Msa0477900:CDS 45.0%
AATGGTTCCTCCATTTCCTG+TGG - chr3_3:82354048-82354067 None:intergenic 45.0%
GGTCTAATCAGATAACCGCT+AGG - chr3_3:82354493-82354512 None:intergenic 45.0%
TGATTAGACCCTGTGAAGGA+GGG + chr3_3:82354503-82354522 Msa0477900:CDS 45.0%
AAAACTTCAGGCACACTCCA+AGG - chr3_3:82354656-82354675 None:intergenic 45.0%
TAAAGTGGGCGCAAAACTTC+AGG - chr3_3:82354668-82354687 None:intergenic 45.0%
GCTTGCTCAGAGAACAACTA+TGG + chr3_3:82354703-82354722 Msa0477900:CDS 45.0%
GGATTCAACGAAGCTGTCAA+CGG + chr3_3:82355021-82355040 Msa0477900:CDS 45.0%
GATTCAACGAAGCTGTCAAC+GGG + chr3_3:82355022-82355041 Msa0477900:CDS 45.0%
! GTCAACGGGTTTACAGATGA+TGG + chr3_3:82355036-82355055 Msa0477900:CDS 45.0%
!! ACGGGTTTACAGATGATGGA+TGG + chr3_3:82355040-82355059 Msa0477900:CDS 45.0%
TTTGGCACATAGCACAGAAC+TGG - chr3_3:82355175-82355194 None:intergenic 45.0%
GCCGAGTATCAGAAGTCATT+TGG - chr3_3:82355381-82355400 None:intergenic 45.0%
! GCTACATGGACCAGCTTTAA+TGG - chr3_3:82355639-82355658 None:intergenic 45.0%
TGCTCAATTGTGTGAGCTAG+TGG - chr3_3:82355707-82355726 None:intergenic 45.0%
TCACACAATTGAGCACGAAG+AGG + chr3_3:82355712-82355731 Msa0477900:intron 45.0%
AGGGATGATATGACAATGCC+TGG + chr3_3:82355915-82355934 Msa0477900:CDS 45.0%
! CATCTTCCTCAGCTTTGTAG+TGG + chr3_3:82356202-82356221 Msa0477900:intron 45.0%
GAACCACTGGAAACAAAGCA+GGG + chr3_3:82356508-82356527 Msa0477900:CDS 45.0%
AACCACTGGAAACAAAGCAG+GGG + chr3_3:82356509-82356528 Msa0477900:CDS 45.0%
GGGTGTCAATTCAGGTCATT+CGG + chr3_3:82356530-82356549 Msa0477900:CDS 45.0%
GGTGTCAATTCAGGTCATTC+GGG + chr3_3:82356531-82356550 Msa0477900:CDS 45.0%
! GATGGGCTTCAAATGCAAAC+TGG - chr3_3:82356587-82356606 None:intergenic 45.0%
TCTGAGAACCAAAACGCGAA+GGG - chr3_3:82356692-82356711 None:intergenic 45.0%
! TTCTGAGAACCAAAACGCGA+AGG - chr3_3:82356693-82356712 None:intergenic 45.0%
CTGAAGCACAAACGCTTACT+CGG + chr3_3:82356739-82356758 Msa0477900:CDS 45.0%
GGTGGATCTGTAACAGCTAT+AGG + chr3_3:82356760-82356779 Msa0477900:CDS 45.0%
GATGTCTTGAAGTGCAACCA+GGG - chr3_3:82357163-82357182 None:intergenic 45.0%
TGATGTCTTGAAGTGCAACC+AGG - chr3_3:82357164-82357183 None:intergenic 45.0%
ATACCTGCTGCATTATCTGG+GGG - chr3_3:82357239-82357258 None:intergenic 45.0%
TTTGTTTATCCAGCATGGGG+AGG + chr3_3:82357463-82357482 Msa0477900:CDS 45.0%
CTTATGAGAGAGCTGTAGCA+TGG + chr3_3:82357493-82357512 Msa0477900:CDS 45.0%
!!! TTTAAATTTAAATATGATTT+TGG + chr3_3:82357079-82357098 Msa0477900:intron 5.0%
! AGGATGATGGCAGTGAGTTC+AGG + chr3_3:82352140-82352159 Msa0477900:exon 50.0%
AAGGTACACACCAGAGCAAG+TGG + chr3_3:82352208-82352227 Msa0477900:CDS 50.0%
TCAAGTGCTTCCACTTGCTC+TGG - chr3_3:82352221-82352240 None:intergenic 50.0%
TGTTGCCTGCGAAGAGAAGT+TGG - chr3_3:82352269-82352288 None:intergenic 50.0%
GAGAAGCAGAGGAAAGAAGC+TGG + chr3_3:82352472-82352491 Msa0477900:CDS 50.0%
AGCAGAGGAAAGAAGCTGGA+AGG + chr3_3:82352476-82352495 Msa0477900:CDS 50.0%
TACTGGAACCGCTGTTGAGT+GGG + chr3_3:82353216-82353235 Msa0477900:CDS 50.0%
CATTTGGACCCACTCAACAG+CGG - chr3_3:82353227-82353246 None:intergenic 50.0%
TAACCTTCATCCCGGGCATT+TGG - chr3_3:82353243-82353262 None:intergenic 50.0%
ATTCCAATGGAATCCGGACC+AGG - chr3_3:82353782-82353801 None:intergenic 50.0%
GCAATTTCTCATGGTTCCCC+TGG + chr3_3:82353806-82353825 Msa0477900:CDS 50.0%
GTATCGTGATTGCCGAACTG+TGG + chr3_3:82354004-82354023 Msa0477900:CDS 50.0%
GTTGTATGCGCCAACAACTC+TGG + chr3_3:82354208-82354227 Msa0477900:intron 50.0%
! GCTGCGCTACACATCACTTT+TGG + chr3_3:82354253-82354272 Msa0477900:CDS 50.0%
!! GCGCTACACATCACTTTTGG+AGG + chr3_3:82354256-82354275 Msa0477900:CDS 50.0%
TTTGGAGGATGGCAGTCTTG+TGG + chr3_3:82354271-82354290 Msa0477900:CDS 50.0%
! CTAACAAAATGCGGCACTGG+AGG - chr3_3:82354457-82354476 None:intergenic 50.0%
GCTCTAACAAAATGCGGCAC+TGG - chr3_3:82354460-82354479 None:intergenic 50.0%
!! AGAGCTGAAGTGTTGCCTAG+CGG + chr3_3:82354475-82354494 Msa0477900:CDS 50.0%
CTGATTAGACCCTGTGAAGG+AGG + chr3_3:82354502-82354521 Msa0477900:CDS 50.0%
GATTAGACCCTGTGAAGGAG+GGG + chr3_3:82354504-82354523 Msa0477900:CDS 50.0%
ATTAGACCCTGTGAAGGAGG+GGG + chr3_3:82354505-82354524 Msa0477900:CDS 50.0%
TGTTCTCTGAGCAAGCAGCA+TGG - chr3_3:82354699-82354718 None:intergenic 50.0%
GTTTCTCAGCCAAGTGTGAC+AGG + chr3_3:82354858-82354877 Msa0477900:CDS 50.0%
TCAGCCAAGTGTGACAGGAT+GGG + chr3_3:82354863-82354882 Msa0477900:CDS 50.0%
AGCACAGAACTGGTGACAGA+TGG - chr3_3:82355165-82355184 None:intergenic 50.0%
GTCCTTGTAGAATGTCCCTC+CGG + chr3_3:82355538-82355557 Msa0477900:intron 50.0%
TGCGGGAACACAGATCAGAA+TGG + chr3_3:82355579-82355598 Msa0477900:CDS 50.0%
GCGGGAACACAGATCAGAAT+GGG + chr3_3:82355580-82355599 Msa0477900:CDS 50.0%
TCAGCAGCTGCCATTAAAGC+TGG + chr3_3:82355626-82355645 Msa0477900:CDS 50.0%
! TCCTCAGCTTTGTAGTGGAG+TGG + chr3_3:82356207-82356226 Msa0477900:intron 50.0%
TCCACTCCACTACAAAGCTG+AGG - chr3_3:82356211-82356230 None:intergenic 50.0%
! GATGCACCCATTTTGCCTTC+TGG + chr3_3:82356295-82356314 Msa0477900:CDS 50.0%
CTTGCCGTGCTAGATTCAAG+AGG - chr3_3:82356334-82356353 None:intergenic 50.0%
CAGAAGCAAGATCGAGTGTG+CGG - chr3_3:82356476-82356495 None:intergenic 50.0%
CGATCTTGCTTCTGCACTTG+AGG + chr3_3:82356482-82356501 Msa0477900:CDS 50.0%
CTTGCTTCTGCACTTGAGGT+TGG + chr3_3:82356486-82356505 Msa0477900:CDS 50.0%
GGAACCACTGGAAACAAAGC+AGG + chr3_3:82356507-82356526 Msa0477900:CDS 50.0%
ACCACTGGAAACAAAGCAGG+GGG + chr3_3:82356510-82356529 Msa0477900:CDS 50.0%
!! AAAGCAGGGGGTGTCAATTC+AGG + chr3_3:82356522-82356541 Msa0477900:CDS 50.0%
CTGAGAACCAAAACGCGAAG+GGG - chr3_3:82356691-82356710 None:intergenic 50.0%
GTTTGTGCTTCAGGAGTTCC+AGG - chr3_3:82356732-82356751 None:intergenic 50.0%
CGAGTAAGCGTTTGTGCTTC+AGG - chr3_3:82356741-82356760 None:intergenic 50.0%
AAGCACAAACGCTTACTCGG+TGG + chr3_3:82356742-82356761 Msa0477900:CDS 50.0%
CGCATCTGAGTGATGCCAAA+GGG - chr3_3:82356948-82356967 None:intergenic 50.0%
CCTTTGGCATCACTCAGATG+CGG + chr3_3:82356946-82356965 Msa0477900:CDS 50.0%
TGACATGCTTGAAACCACCC+TGG + chr3_3:82357143-82357162 Msa0477900:CDS 50.0%
ATTCCCCCAGATAATGCAGC+AGG + chr3_3:82357233-82357252 Msa0477900:CDS 50.0%
ACAGACGACCCTTGCCACTA+CGG + chr3_3:82352898-82352917 Msa0477900:intron 55.0%
ACTCGTGTCCGTAGTGGCAA+GGG - chr3_3:82352909-82352928 None:intergenic 55.0%
AACTCGTGTCCGTAGTGGCA+AGG - chr3_3:82352910-82352929 None:intergenic 55.0%
CTCACAACTCGTGTCCGTAG+TGG - chr3_3:82352915-82352934 None:intergenic 55.0%
GGACACGAGTTGTGAGTCAG+TGG + chr3_3:82352919-82352938 Msa0477900:CDS 55.0%
CTACTGGAACCGCTGTTGAG+TGG + chr3_3:82353215-82353234 Msa0477900:CDS 55.0%
GTTGAGTGGGTCCAAATGCC+CGG + chr3_3:82353229-82353248 Msa0477900:CDS 55.0%
TTGAGTGGGTCCAAATGCCC+GGG + chr3_3:82353230-82353249 Msa0477900:CDS 55.0%
TAGCCTGGTCCGGATTCCAT+TGG + chr3_3:82353776-82353795 Msa0477900:intron 55.0%
TTCTCATGGTTCCCCTGGAG+TGG + chr3_3:82353811-82353830 Msa0477900:CDS 55.0%
TTGCAGGTTCAAGACCCACG+AGG - chr3_3:82353853-82353872 None:intergenic 55.0%
TCGTGGGTCTTGAACCTGCA+AGG + chr3_3:82353852-82353871 Msa0477900:CDS 55.0%
CGTGGGTCTTGAACCTGCAA+GGG + chr3_3:82353853-82353872 Msa0477900:CDS 55.0%
ATGGATCCCCCTCCTTCACA+GGG - chr3_3:82354514-82354533 None:intergenic 55.0%
TATGGATCCCCCTCCTTCAC+AGG - chr3_3:82354515-82354534 None:intergenic 55.0%
CTCAGCCAAGTGTGACAGGA+TGG + chr3_3:82354862-82354881 Msa0477900:CDS 55.0%
CAGCCAAGTGTGACAGGATG+GGG + chr3_3:82354864-82354883 Msa0477900:CDS 55.0%
CTTCCCCATCCTGTCACACT+TGG - chr3_3:82354870-82354889 None:intergenic 55.0%
CAAGTGTGACAGGATGGGGA+AGG + chr3_3:82354868-82354887 Msa0477900:CDS 55.0%
CTAAGCGCACGTAAAGCTGC+AGG - chr3_3:82354897-82354916 None:intergenic 55.0%
AGCCGGAGGGACATTCTACA+AGG - chr3_3:82355543-82355562 None:intergenic 55.0%
! CTGGTCCATGTAGCTTGCCA+GGG + chr3_3:82355645-82355664 Msa0477900:CDS 55.0%
! TGGTCCATGTAGCTTGCCAG+GGG + chr3_3:82355646-82355665 Msa0477900:CDS 55.0%
ACCACCAAAAGCTCCTGCTC+GGG - chr3_3:82355672-82355691 None:intergenic 55.0%
GACCACCAAAAGCTCCTGCT+CGG - chr3_3:82355673-82355692 None:intergenic 55.0%
!! AGCAGGAGCTTTTGGTGGTC+AGG + chr3_3:82355673-82355692 Msa0477900:CDS 55.0%
GCAAGATCGAGTGTGCGGTT+AGG - chr3_3:82356471-82356490 None:intergenic 55.0%
GCACTTGAGGTTGGAACCAC+TGG + chr3_3:82356495-82356514 Msa0477900:CDS 55.0%
!! ACCCCCTGCTTTGTTTCCAG+TGG - chr3_3:82356514-82356533 None:intergenic 55.0%
! GCACTTTCCCCTTCGCGTTT+TGG + chr3_3:82356681-82356700 Msa0477900:CDS 55.0%
TGTGCTTCAGGAGTTCCAGG+TGG - chr3_3:82356729-82356748 None:intergenic 55.0%
CCGCATCTGAGTGATGCCAA+AGG - chr3_3:82356949-82356968 None:intergenic 55.0%
GTCTTGAAGTGCAACCAGGG+TGG - chr3_3:82357160-82357179 None:intergenic 55.0%
CTGGGGGAATTCAGAGCACA+GGG - chr3_3:82357223-82357242 None:intergenic 55.0%
TCTGGGGGAATTCAGAGCAC+AGG - chr3_3:82357224-82357243 None:intergenic 55.0%
! AGTTATTGGCCTCCCCATGC+TGG - chr3_3:82357475-82357494 None:intergenic 55.0%
GTGGGCATATGCACCACCTA+TGG + chr3_3:82357690-82357709 Msa0477900:three_prime_UTR 55.0%
GCAGGTGCAGAGAGAAGCAG+AGG + chr3_3:82352461-82352480 Msa0477900:intron 60.0%
CGGTCAGCAGCATCCACCAA+GGG + chr3_3:82352949-82352968 Msa0477900:CDS 60.0%
CAAGGGATGCAAGCCCTGCT+GGG + chr3_3:82352966-82352985 Msa0477900:CDS 60.0%
GGTCCAAATGCCCGGGATGA+AGG + chr3_3:82353237-82353256 Msa0477900:CDS 60.0%
! CGACCTGGTGCCAGAGTTGT+TGG - chr3_3:82354221-82354240 None:intergenic 60.0%
AGCAACCAGAAGTCGCGACC+TGG - chr3_3:82354236-82354255 None:intergenic 60.0%
! TGCGGCACTGGAGGCATACT+AGG - chr3_3:82354448-82354467 None:intergenic 60.0%
GTGTGACAGGATGGGGAAGG+CGG + chr3_3:82354871-82354890 Msa0477900:CDS 60.0%
! GCTGGTCCATGTAGCTTGCC+AGG + chr3_3:82355644-82355663 Msa0477900:CDS 60.0%
GGAGTGGACGAGCATGCAGT+TGG + chr3_3:82356223-82356242 Msa0477900:CDS 60.0%
GCGGTCAGCAGCATCCACCA+AGG + chr3_3:82352948-82352967 Msa0477900:CDS 65.0%
GCAGGGCTTGCATCCCTTGG+TGG - chr3_3:82352965-82352984 None:intergenic 65.0%
CCAGCAGGGCTTGCATCCCT+TGG - chr3_3:82352968-82352987 None:intergenic 65.0%
CCAAGGGATGCAAGCCCTGC+TGG + chr3_3:82352965-82352984 Msa0477900:CDS 65.0%
AGGCACGTGCAGCCACTCCA+GGG - chr3_3:82353826-82353845 None:intergenic 65.0%
TTCAAGACCCACGAGGCCGC+AGG - chr3_3:82353846-82353865 None:intergenic 65.0%
GCGCCAACAACTCTGGCACC+AGG + chr3_3:82354215-82354234 Msa0477900:CDS 65.0%
TGGCACCAGGTCGCGACTTC+TGG + chr3_3:82354228-82354247 Msa0477900:CDS 65.0%
! GCCCGAGCAGGAGCTTTTGG+TGG + chr3_3:82355668-82355687 Msa0477900:CDS 65.0%
GGCACGTGCAGCCACTCCAG+GGG - chr3_3:82353825-82353844 None:intergenic 70.0%
CAGGCACGTGCAGCCACTCC+AGG - chr3_3:82353827-82353846 None:intergenic 70.0%
GGAGTGGCTGCACGTGCCTG+CGG + chr3_3:82353827-82353846 Msa0477900:CDS 70.0%
CGGGCCCCTGGCAAGCTACA+TGG - chr3_3:82355653-82355672 None:intergenic 70.0%
AAAGCTCCTGCTCGGGCCCC+TGG - chr3_3:82355665-82355684 None:intergenic 70.0%
! GGGGCCCGAGCAGGAGCTTT+TGG + chr3_3:82355665-82355684 Msa0477900:CDS 70.0%
TGCACGTGCCTGCGGCCTCG+TGG + chr3_3:82353835-82353854 Msa0477900:CDS 75.0%
GCACGTGCCTGCGGCCTCGT+GGG + chr3_3:82353836-82353855 Msa0477900:CDS 75.0%
AGCTTGCCAGGGGCCCGAGC+AGG + chr3_3:82355656-82355675 Msa0477900:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 82351895 82357759 82351895 ID=Msa0477900;Name=Msa0477900
chr3_3 mRNA 82351895 82357759 82351895 ID=Msa0477900-mRNA-1;Parent=Msa0477900;Name=Msa0477900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=248|0.88|0.88|1|1|1|18|175|826
chr3_3 exon 82351895 82352360 82351895 ID=Msa0477900-mRNA-1:exon:22886;Parent=Msa0477900-mRNA-1
chr3_3 exon 82352465 82352624 82352465 ID=Msa0477900-mRNA-1:exon:22887;Parent=Msa0477900-mRNA-1
chr3_3 exon 82352902 82352987 82352902 ID=Msa0477900-mRNA-1:exon:22888;Parent=Msa0477900-mRNA-1
chr3_3 exon 82353168 82353258 82353168 ID=Msa0477900-mRNA-1:exon:22889;Parent=Msa0477900-mRNA-1
chr3_3 exon 82353779 82353874 82353779 ID=Msa0477900-mRNA-1:exon:22890;Parent=Msa0477900-mRNA-1
chr3_3 exon 82353972 82354085 82353972 ID=Msa0477900-mRNA-1:exon:22891;Parent=Msa0477900-mRNA-1
chr3_3 exon 82354209 82354292 82354209 ID=Msa0477900-mRNA-1:exon:22892;Parent=Msa0477900-mRNA-1
chr3_3 exon 82354409 82354564 82354409 ID=Msa0477900-mRNA-1:exon:22893;Parent=Msa0477900-mRNA-1
chr3_3 exon 82354653 82354727 82354653 ID=Msa0477900-mRNA-1:exon:22894;Parent=Msa0477900-mRNA-1
chr3_3 exon 82354825 82354931 82354825 ID=Msa0477900-mRNA-1:exon:22895;Parent=Msa0477900-mRNA-1
chr3_3 exon 82355020 82355212 82355020 ID=Msa0477900-mRNA-1:exon:22896;Parent=Msa0477900-mRNA-1
chr3_3 exon 82355548 82355694 82355548 ID=Msa0477900-mRNA-1:exon:22897;Parent=Msa0477900-mRNA-1
chr3_3 exon 82355876 82355956 82355876 ID=Msa0477900-mRNA-1:exon:22898;Parent=Msa0477900-mRNA-1
chr3_3 exon 82356214 82356363 82356214 ID=Msa0477900-mRNA-1:exon:22899;Parent=Msa0477900-mRNA-1
chr3_3 exon 82356456 82356781 82356456 ID=Msa0477900-mRNA-1:exon:22900;Parent=Msa0477900-mRNA-1
chr3_3 exon 82356889 82356988 82356889 ID=Msa0477900-mRNA-1:exon:22901;Parent=Msa0477900-mRNA-1
chr3_3 exon 82357105 82357254 82357105 ID=Msa0477900-mRNA-1:exon:22902;Parent=Msa0477900-mRNA-1
chr3_3 exon 82357438 82357759 82357438 ID=Msa0477900-mRNA-1:exon:22903;Parent=Msa0477900-mRNA-1
chr3_3 five_prime_UTR 82351895 82352142 82351895 ID=Msa0477900-mRNA-1:five_prime_utr;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82352143 82352360 82352143 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82352465 82352624 82352465 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82352902 82352987 82352902 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82353168 82353258 82353168 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82353779 82353874 82353779 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82353972 82354085 82353972 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82354209 82354292 82354209 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82354409 82354564 82354409 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82354653 82354727 82354653 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82354825 82354931 82354825 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82355020 82355212 82355020 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82355548 82355694 82355548 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82355876 82355956 82355876 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82356214 82356363 82356214 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82356456 82356781 82356456 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82356889 82356988 82356889 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82357105 82357254 82357105 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 CDS 82357438 82357584 82357438 ID=Msa0477900-mRNA-1:cds;Parent=Msa0477900-mRNA-1
chr3_3 three_prime_UTR 82357585 82357759 82357585 ID=Msa0477900-mRNA-1:three_prime_utr;Parent=Msa0477900-mRNA-1
Gene Sequence

>Msa0477900

ATGATGGCAGTGAGTTCAGGATGCAAAGATGGTAGCAAGATAGCAATGGACAATGGAAAGTACGTAAGGTACACACCAGAGCAAGTGGAAGCACTTGAAAGACTCTACCATGAATGTCCAAAACCAACTTCTCTTCGCAGGCAACAACTCATTAGAGAGTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAACAGAAGGTGCAGAGAGAAGCAGAGGAAAGAAGCTGGAAGGTTACAAGCTGTGAACAGGAAGTTAACAGCAATGAACAAACTGCTTATGGAGGAAAATGATAGATTGCAGAAACAAGTGTCACACCTTGTGTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTTGCCACTACGGACACGAGTTGTGAGTCAGTGGTAACAAGCGGTCAGCAGCATCCACCAAGGGATGCAAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCTGCACGTGCCTGCGGCCTCGTGGGTCTTGAACCTGCAAGGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGGAAATGGAGGAACCATTGAATTGCTTTACATGCAGTTGTATGCGCCAACAACTCTGGCACCAGGTCGCGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGCAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACACAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTTAGAGCTGAAGTGTTGCCTAGCGGTTATCTGATTAGACCCTGTGAAGGAGGGGGATCCATAATTCATATTGTTGATCATATGCTTTTAGAGCCTTGGAGTGTGCCTGAAGTTTTGCGCCCACTTTATGAGTCATCCATGCTGCTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTAAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGGCGGCCTGCAGCTTTACGTGCGCTTAGTCAAAGATTGAGCAAGGGATTCAACGAAGCTGTCAACGGGTTTACAGATGATGGATGGTCTATGTTAGATAGTGATGGAATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGATTTTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCAGCAGCTGCCATTAAAGCTGGTCCATGTAGCTTGCCAGGGGCCCGAGCAGGAGCTTTTGGTGGTCAGTTCATGGAGGTTATCAAGCTTGAGAACATGGGCTACTATAGGGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTTTGTAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAGCTTATTTTTGCTCCAATTGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGTTTTCGTATCATACCTCTTGAATCTAGCACGGCAAGTCTTCTTTATGATGCTGCTAGTCCTAACCGCACACTCGATCTTGCTTCTGCACTTGAGGTTGGAACCACTGGAAACAAAGCAGGGGGTGTCAATTCAGGTCATTCGGGCAACACAAAATCTGTGATGACAATAGCGTTCCAGTTTGCATTTGAAGCCCATCTTCAAGATAATATCGCAGCTATGGCGCGACAGTATGTGCGTAGCATTGTTGCATCTGTTCAGAGAGTTTCATTAGCACTTTCCCCTTCGCGTTTTGGTTCTCAGAATGCTTTTCACTTACCACCTGGAACTCCTGAAGCACAAACGCTTACTCGGTGGATCTGTAACAGCTATAGATTCTATCTAGGCGCAGAACTACTTAAGTGTGAAGGGAGTGAATCGATACTTAAATCCCTTTGGCATCACTCAGATGCGGTTCTGTGTTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCGAATCAAGCTGGACTTGACATGCTTGAAACCACCCTGGTTGCACTTCAAGACATCACCCTAGAAAAGATATTTGATGACAATGGAAAGAAAACCCTGTGCTCTGAATTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCTGTAGCATGGAAAGTATTGAACGAAGAAGAATCTGCTCATTGCATCTGTTTCATGTTCATCAATTGGTCTTTTGTCTAG
Protein sequence

>Msa0477900

MMAVSSGCKDGSKIAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQNTTLATTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPSMPPVPHFVRAEVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSMLDSDGIDDVTLLVNSSPSKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARAGAFGGQFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLESSTASLLYDAASPNRTLDLASALEVGTTGNKAGGVNSGHSGNTKSVMTIAFQFAFEAHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLTRWICNSYRFYLGAELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCICFMFINWSFV*