AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGGTTTTTTTTTTTATTTA+GGG - 10705:4563-4582 MS.gene068820:intron 10.0%
!!! TTTGTTTTATTTTATTTTGT+TGG - 10705:4523-4542 MS.gene068820:intron 10.0%
!! AAAAATTTCAGACTTATATA+TGG - 10705:5154-5173 MS.gene068820:intron 15.0%
!! AAATTCAGAATTTATAGATA+TGG - 10705:4483-4502 MS.gene068820:CDS 15.0%
!! AGTAAATGTTATTATATTGA+AGG - 10705:4671-4690 MS.gene068820:intron 15.0%
!!! GTAGGTTTTTTTTTTTATTT+AGG - 10705:4562-4581 MS.gene068820:intron 15.0%
!! AAATTCTGAATTTAGCATAT+TGG + 10705:4476-4495 MS.gene068820:intergenic 20.0%
!! AATGCTAATAGACAAATTAA+TGG - 10705:4587-4606 MS.gene068820:intron 20.0%
!! TTGATTATAACCAGTAAATT+TGG - 10705:4822-4841 MS.gene068820:intron 20.0%
!!! ACAAACTTATTTTGATCATT+TGG + 10705:4989-5008 MS.gene068820:intergenic 20.0%
!!! ATTGGTTTCTAGATATATAT+AGG + 10705:4458-4477 MS.gene068820:intergenic 20.0%
!!! CAAACTTATTTTGATCATTT+GGG + 10705:4988-5007 MS.gene068820:intergenic 20.0%
!!! TAATAGACAAATTAATGGAT+AGG - 10705:4592-4611 MS.gene068820:intron 20.0%
! AGATATATATAGGAGATTTG+AGG + 10705:4448-4467 MS.gene068820:intergenic 25.0%
! TATAACCAGTAAATTTGGTT+TGG - 10705:4827-4846 MS.gene068820:intron 25.0%
!! TGAAATTTTTACTGTCCTTA+TGG + 10705:5144-5163 MS.gene068820:intergenic 25.0%
!!! CATACTAAGTTTTTTCCATA+AGG - 10705:5126-5145 MS.gene068820:intron 25.0%
AAACACCAAACCAAATTTAC+TGG + 10705:4835-4854 MS.gene06882:intergenic 30.0%
AAGGTTGAGATTCATTACTA+TGG - 10705:4690-4709 MS.gene068820:intron 30.0%
AGAAGTTAATCTTGTGAGAA+TGG - 10705:5238-5257 MS.gene068820:intron 30.0%
CAGACTTATATATGGATCTT+TGG - 10705:5162-5181 MS.gene068820:intron 30.0%
CTTAGTATGCAACATGATAA+AGG + 10705:5216-5235 MS.gene068820:intergenic 30.0%
TTAAATGAGAGAACTATACC+TGG + 10705:4411-4430 MS.gene068820:intergenic 30.0%
! GACAAATTAATGGATAGGTA+AGG - 10705:4597-4616 MS.gene068820:intron 30.0%
AGGACAAAGACAAAAGGATT+AGG + 10705:4783-4802 MS.gene068820:intergenic 35.0%
ATTCTCATCTTTGTGGTCAT+AGG + 10705:4754-4773 MS.gene068820:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG - 10705:5070-5089 MS.gene068820:intron 35.0%
GGTAGAGTATGAGAATTTGT+AGG - 10705:4544-4563 MS.gene068820:intron 35.0%
TATGACCACAAAGATGAGAA+TGG - 10705:4753-4772 MS.gene068820:intron 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG - 10705:4783-4802 MS.gene068820:intron 35.0%
! ATGCAACATGATAAAGGCAT+AGG + 10705:5210-5229 MS.gene068820:intergenic 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG + 10705:5062-5081 MS.gene068820:intergenic 35.0%
GAACCAAGGACAAAGACAAA+AGG + 10705:4789-4808 MS.gene068820:intergenic 40.0%
GATCACCATTCTCATCTTTG+TGG + 10705:4761-4780 MS.gene068820:intergenic 40.0%
GCAGTGAGATCAATGAAAGT+CGG - 10705:5296-5315 MS.gene068820:intron 40.0%
GGTAATTGCTGGAATTGATG+TGG - 10705:5274-5293 MS.gene068820:intron 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG - 10705:4789-4808 MS.gene068820:intron 40.0%
AGCTTACCTTACCAGAACCA+AGG + 10705:4803-4822 MS.gene068820:intergenic 45.0%
GACTTGCAGCAAAACAAGGA+TGG - 10705:4715-4734 MS.gene068820:intron 45.0%
GGTAGACTTGCAGCAAAACA+AGG - 10705:4711-4730 MS.gene068820:intron 45.0%
GTGAGATCAATGAAAGTCGG+TGG - 10705:5299-5318 MS.gene068820:intron 45.0%
GTGTTCTGATACCCAAGTGA+GGG + 10705:5347-5366 MS.gene068820:intergenic 45.0%
TATACCTGGTCTCCATCTTG+AGG + 10705:4397-4416 MS.gene068820:intergenic 45.0%
TCATCATACCTCCCTCACTT+GGG - 10705:5333-5352 MS.gene068820:intron 45.0%
TGCTGTGTTCAGGTAATTGC+TGG - 10705:5263-5282 MS.gene068820:intron 45.0%
TGGGTATCAGAACACATCAC+AGG - 10705:5352-5371 MS.gene068820:intron 45.0%
TGTGTTCTGATACCCAAGTG+AGG + 10705:5348-5367 MS.gene068820:intergenic 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG - 10705:4794-4813 MS.gene068820:intron 45.0%
!! GAGAATGGATTGCTGTGTTC+AGG - 10705:5253-5272 MS.gene068820:intron 45.0%
AGTTCCTCAAGATGGAGACC+AGG - 10705:4390-4409 MS.gene068820:CDS 50.0%
GTCATCATACCTCCCTCACT+TGG - 10705:5332-5351 MS.gene068820:intron 50.0%
TTCTGATACCCAAGTGAGGG+AGG + 10705:5344-5363 MS.gene068820:intergenic 50.0%


Chromosome Type Strat End Strand Name
10705 gene 4386 5391 4386 ID=MS.gene068820
10705 mRNA 4386 5391 4386 ID=MS.gene068820.t1;Parent=MS.gene068820
10705 exon 5366 5391 5366 ID=MS.gene068820.t1.exon1;Parent=MS.gene068820.t1
10705 CDS 5366 5391 5366 ID=cds.MS.gene068820.t1;Parent=MS.gene068820.t1
10705 exon 4962 5084 4962 ID=MS.gene068820.t1.exon2;Parent=MS.gene068820.t1
10705 CDS 4962 5084 4962 ID=cds.MS.gene068820.t1;Parent=MS.gene068820.t1
10705 exon 4386 4502 4386 ID=MS.gene068820.t1.exon3;Parent=MS.gene068820.t1
10705 CDS 4386 4502 4386 ID=cds.MS.gene068820.t1;Parent=MS.gene068820.t1
Gene Sequence

>MS.gene068820

GTGAAGTTCCTCAAGATGGAGACCAGGTATAGTTCTCTCATTTAAATTACTACTAACAACCTCAAATCTCCTATATATATCTAGAAACCAATATGCTAAATTCAGAATTTATAGATATGGTTATATGTCTTGATAAATTTGTTTTATTTTATTTTGTTGGTAGAGTATGAGAATTTGTAGGTTTTTTTTTTTATTTAGGGAAATGCTAATAGACAAATTAATGGATAGGTAAGGTGTGTAAGTATTTATTTACATTATTATTTTTCATTGTGACTATTATGATTTAGTAAATGTTATTATATTGAAGGTTGAGATTCATTACTATGGTAGACTTGCAGCAAAACAAGGATGGCGTTTTGATTCAACCTATGACCACAAAGATGAGAATGGTGATCCTAATCCTTTTGTCTTTGTCCTTGGTTCTGGTAAGGTAAGCTTGATTATAACCAGTAAATTTGGTTTGGTGTTTGACAAACATGATTTGAATCAATTTAAGTTTGAGATAGTAATCAATGTAAAATTGTGACATGATGTTAAAGCTACTCTTTATCACTTTTGTTCAAACTCAGTTCGAGCAAGAACAAGTTTATTAGAGCGAACCCAAATGATCAAAATAAGTTTGTTATTCTAAACTAACTTTCTTGTTACAAATGTGTATCGAAACATTTACTCACCACAACTCAAGAAGCAATTAAGCATCAATGTGGTATACAAAGCTCTTGCAATTTATTCATGATATGCATACTAAGTTTTTTCCATAAGGACAGTAAAAATTTCAGACTTATATATGGATCTTTGGAAAAGTTGTAATTAAGTTAATTCCTATGCCTTTATCATGTTGCATACTAAGAAAGAAGTTAATCTTGTGAGAATGGATTGCTGTGTTCAGGTAATTGCTGGAATTGATGTGGCAGTGAGATCAATGAAAGTCGGTGGTATTCGCAGAGTCATCATACCTCCCTCACTTGGGTATCAGAACACATCACAGGAACCTATCCCGCCTAAT

Protein sequence

>MS.gene068820.t1

VKFLKMETRLRFITMVDLQQNKDGVLIQPMTTKMRMVILILLSLSLVLVRULLELMWQUDQUKSVVFAESSYLPHLGIRTHHRNLSRL