AlfalfaGEDB | MS.gene22670

M. sativa cultivar XinJiangDaYe / MS.gene22670

KEGG: K01807
GO: GO:0003674 GO:0003824 GO:0004751 GO:0006091 GO:0008150 GO:0008152 GO:0009052 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0044237 GO:0071704 GO:1901135
PFAM: PF06026.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22670.t1	AFK42539.1	99.5	213	1	0	1	213	68	280	8.90E-112	412.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22670.t1	Q9S726	78.4	213	46	0	1	213	64	276	2.6e-91	336.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22670.t1	G7L1U4	99.5	213	1	0	1	213	68	280	6.4e-112	412.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene22670	0.86239	5.24E-64	-1.69E-46
MS.gene049173	MS.gene22670	0.841926	3.53E-58	-1.69E-46
MS.gene049181	MS.gene22670	-0.81044	1.15E-50	-1.69E-46
MS.gene049217	MS.gene22670	0.851044	1.15E-60	-1.69E-46
MS.gene049222	MS.gene22670	0.880132	7.06E-70	-1.69E-46
MS.gene049232	MS.gene22670	0.86863	5.66E-66	-1.69E-46
MS.gene049285	MS.gene22670	0.908533	1.54E-81	-1.69E-46
MS.gene049320	MS.gene22670	0.90956	4.98E-82	-1.69E-46
MS.gene049609	MS.gene22670	0.802956	4.39E-49	-1.69E-46
MS.gene049627	MS.gene22670	0.813522	2.45E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22670.t1	MTR_7g114900	99.531	213	1	0	1	213	68	280	2.63e-153	426
MS.gene22670.t1	MTR_1g108440	66.822	214	70	1	1	213	55	268	5.91e-99	288
MS.gene22670.t1	MTR_2g032540	27.111	225	149	5	1	213	67	288	4.15e-23	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22670.t1	AT3G04790	78.404	213	46	0	1	213	64	276	2.51e-121	345
MS.gene22670.t1	AT2G01290	62.441	213	80	0	1	213	52	264	1.43e-93	275
MS.gene22670.t1	AT1G71100	60.092	218	82	1	1	213	48	265	4.83e-86	255
MS.gene22670.t1	AT5G44520	31.532	222	136	5	1	209	56	274	1.12e-25	101
MS.gene22670.t1	AT5G44520	31.532	222	136	5	1	209	86	304	2.27e-25	101

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Find 60 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGTCTCTGGTCTCGG+TGG	0.677817	7.2:-2356918	MS.gene22670:CDS
AAATTGAGAGTGGATGAAAG+TGG	0.649838	7.2:-2356798	MS.gene22670:CDS
AACCTTGTTAAAGGCCGCGG+CGG	0.661052	7.2:-2357008	MS.gene22670:CDS
AAGAGAACGAGCTTGTTCTT+CGG	0.503417	7.2:+2357112	None:intergenic
AAGCGGTTTAGCGATGCCGG+TGG	0.640481	7.2:-2356895	MS.gene22670:CDS
ACGAAACTGGTCTCTGGTCT+CGG	0.463473	7.2:-2356921	MS.gene22670:CDS
AGCAGCATTTGCATCTCTAA+TGG	0.354451	7.2:+2356719	None:intergenic
AGCGGCATGGTCCTCGGCCT+CGG	0.399773	7.2:-2357233	None:intergenic
AGCTTGTTCTTCGGTGCGTT+TGG	0.324267	7.2:+2357121	None:intergenic
AGTGGGAACGCCGATGATGT+TGG	0.637767	7.2:+2357145	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGAATTGTTCAAAGAAGA+AGG	-	chr7.2:2357004-2357023	MS.gene22670:CDS	30.0%
AAATTGAGAGTGGATGAAAG+TGG	-	chr7.2:2357037-2357056	MS.gene22670:CDS	35.0%
CCATTTCTCAACCTTGTTAA+AGG	-	chr7.2:2356818-2356837	MS.gene22670:CDS	35.0%
CCTTTAACAAGGTTGAGAAA+TGG	+	chr7.2:2356821-2356840	None:intergenic	35.0%
AGCAGCATTTGCATCTCTAA+TGG	+	chr7.2:2357119-2357138	None:intergenic	40.0%
ATTAGAGATGCAAATGCTGC+TGG	-	chr7.2:2357118-2357137	MS.gene22670:CDS	40.0%
CACGACGAATTTATCAGAAG+CGG	+	chr7.2:2356882-2356901	None:intergenic	40.0%
GCAGCATTTGCATCTCTAAT+GGG	+	chr7.2:2357118-2357137	None:intergenic	40.0%
GTCATCATTGCTGGTAAAAC+TGG	-	chr7.2:2357205-2357224	MS.gene22670:CDS	40.0%
TTCTGATAAATTCGTCGTGG+TGG	-	chr7.2:2356883-2356902	MS.gene22670:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	2356608	2357249	2356608	ID=MS.gene22670
chr7.2	mRNA	2356608	2357249	2356608	ID=MS.gene22670.t1;Parent=MS.gene22670
chr7.2	exon	2356608	2357249	2356608	ID=MS.gene22670.t1.exon1;Parent=MS.gene22670.t1
chr7.2	CDS	2356608	2357249	2356608	ID=cds.MS.gene22670.t1;Parent=MS.gene22670.t1

Gene Sequence

>MS.gene22670

ATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCTCCAAACTCGGCGAACTTCTCAACTCCGGCGAACTCACCAACATCATCGGCGTTCCCACTTCCAAACGCACCGAAGAACAAGCTCGTTCTCTTGGTATTCCTCTCTCTGTTCTGGACGATAATCCTCGTCTCGATCTCGCCATCGACGGTGCTGATGAAGTCGATCCATTTCTCAACCTTGTTAAAGGCCGCGGCGGTGCTCTCCTCCGTGAGAAAATGGTGGAAGCCGCTTCTGATAAATTCGTCGTGGTGGTCGATGATACGAAACTGGTCTCTGGTCTCGGTGGAAGCGGTTTAGCGATGCCGGTGGAGGTTGTTCAGTTTTGTTGGAAATATAATTTGATTAGGCTACAAGAATTGTTCAAAGAAGAAGGCGTTGATGCGAAATTGAGAGTGGATGAAAGTGGAAAACCATATGTTACTGATAATTCTAATTACATTGTTGATTTGTATTTTAAGACTCCCATTAGAGATGCAAATGCTGCTGGAGCTGAGATTTCGTCGCTTGAAGGTGTCGTCGAGCATGGTTTGTTCTTGAACATGGCTACCTCTGTCATCATTGCTGGTAAAACTGGTGTTGAAGTGAAAAACAAGTGA

Protein sequence

>MS.gene22670.t1

MVLGLGTGSTAAFVVSKLGELLNSGELTNIIGVPTSKRTEEQARSLGIPLSVLDDNPRLDLAIDGADEVDPFLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLIRLQELFKEEGVDAKLRVDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISSLEGVVEHGLFLNMATSVIIAGKTGVEVKNK