Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066565.t1 | KEH24523.1 | 94.8 | 563 | 29 | 0 | 4 | 566 | 69 | 631 | 0.00E+00 | 1076.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066565.t1 | Q8RY11 | 75.4 | 549 | 135 | 0 | 17 | 565 | 80 | 628 | 2.0e-250 | 866.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066565.t1 | A0A072U5V8 | 94.8 | 563 | 29 | 0 | 4 | 566 | 69 | 631 | 0.0e+00 | 1076.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene066565 | 0.860213 | 2.42E-63 | -1.69E-46 |
| MS.gene049173 | MS.gene066565 | 0.818788 | 1.63E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene066565 | 0.871298 | 7.60E-67 | -1.69E-46 |
| MS.gene049222 | MS.gene066565 | 0.915104 | 8.75E-85 | -1.69E-46 |
| MS.gene049232 | MS.gene066565 | 0.869441 | 3.09E-66 | -1.69E-46 |
| MS.gene049285 | MS.gene066565 | 0.905246 | 5.26E-80 | -1.69E-46 |
| MS.gene049320 | MS.gene066565 | 0.887486 | 1.37E-72 | -1.69E-46 |
| MS.gene04939 | MS.gene066565 | 0.807401 | 5.15E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene066565 | 0.8283 | 9.70E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene066565 | -0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene049627 | MS.gene066565 | 0.906775 | 1.03E-80 | -1.69E-46 |
| MS.gene049633 | MS.gene066565 | 0.871893 | 4.83E-67 | -1.69E-46 |
| MS.gene049805 | MS.gene066565 | 0.802299 | 5.99E-49 | -1.69E-46 |
| MS.gene049865 | MS.gene066565 | 0.831038 | 2.09E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene066565 | 0.859299 | 4.55E-63 | -1.69E-46 |
| MS.gene050163 | MS.gene066565 | 0.909439 | 5.69E-82 | -1.69E-46 |
| MS.gene050165 | MS.gene066565 | 0.913349 | 6.82E-84 | -1.69E-46 |
| MS.gene050170 | MS.gene066565 | 0.84532 | 4.37E-59 | -1.69E-46 |
| MS.gene050216 | MS.gene066565 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene050323 | MS.gene066565 | 0.857999 | 1.11E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene066565 | 0.896436 | 3.70E-76 | -1.69E-46 |
| MS.gene050403 | MS.gene066565 | 0.83125 | 1.86E-55 | -1.69E-46 |
| MS.gene050444 | MS.gene066565 | 0.852854 | 3.51E-61 | -1.69E-46 |
| MS.gene050496 | MS.gene066565 | 0.853936 | 1.72E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene066565 | 0.907959 | 2.88E-81 | -1.69E-46 |
| MS.gene050518 | MS.gene066565 | 0.913984 | 3.26E-84 | -1.69E-46 |
| MS.gene050538 | MS.gene066565 | 0.820517 | 6.58E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene066565 | 0.877641 | 5.34E-69 | -1.69E-46 |
| MS.gene050612 | MS.gene066565 | 0.896709 | 2.84E-76 | -1.69E-46 |
| MS.gene050675 | MS.gene066565 | 0.892793 | 1.14E-74 | -1.69E-46 |
| MS.gene050699 | MS.gene066565 | 0.883519 | 4.19E-71 | -1.69E-46 |
| MS.gene050747 | MS.gene066565 | 0.86803 | 8.84E-66 | -1.69E-46 |
| MS.gene050772 | MS.gene066565 | 0.869295 | 3.45E-66 | -1.69E-46 |
| MS.gene05080 | MS.gene066565 | 0.835648 | 1.48E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene066565 | 0.867838 | 1.02E-65 | -1.69E-46 |
| MS.gene050871 | MS.gene066565 | 0.86544 | 5.90E-65 | -1.69E-46 |
| MS.gene050876 | MS.gene066565 | 0.931565 | 3.13E-94 | -1.69E-46 |
| MS.gene05087 | MS.gene066565 | 0.877305 | 6.99E-69 | -1.69E-46 |
| MS.gene050904 | MS.gene066565 | 0.921484 | 3.37E-88 | -1.69E-46 |
| MS.gene050950 | MS.gene066565 | 0.873576 | 1.32E-67 | -1.69E-46 |
| MS.gene050986 | MS.gene066565 | 0.89784 | 9.51E-77 | -1.69E-46 |
| MS.gene05100 | MS.gene066565 | 0.844631 | 6.71E-59 | -1.69E-46 |
| MS.gene051228 | MS.gene066565 | 0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene066565 | 0.843474 | 1.37E-58 | -1.69E-46 |
| MS.gene051317 | MS.gene066565 | 0.898682 | 4.18E-77 | -1.69E-46 |
| MS.gene051364 | MS.gene066565 | -0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene066565 | 0.83798 | 3.77E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene066565 | 0.855273 | 7.05E-62 | -1.69E-46 |
| MS.gene051810 | MS.gene066565 | 0.866524 | 2.68E-65 | -1.69E-46 |
| MS.gene051858 | MS.gene066565 | 0.845981 | 2.89E-59 | -1.69E-46 |
| MS.gene051949 | MS.gene066565 | 0.854698 | 1.04E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene066565 | 0.854501 | 1.18E-61 | -1.69E-46 |
| MS.gene052271 | MS.gene066565 | 0.829452 | 5.11E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene066565 | 0.839605 | 1.43E-57 | -1.69E-46 |
| MS.gene052482 | MS.gene066565 | 0.869289 | 3.46E-66 | -1.69E-46 |
| MS.gene052486 | MS.gene066565 | 0.892828 | 1.11E-74 | -1.69E-46 |
| MS.gene052503 | MS.gene066565 | 0.821385 | 4.15E-53 | -1.69E-46 |
| MS.gene052605 | MS.gene066565 | 0.81852 | 1.88E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene066565 | 0.833034 | 6.73E-56 | -1.69E-46 |
| MS.gene052670 | MS.gene066565 | 0.825693 | 4.08E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene066565 | 0.811748 | 5.99E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene066565 | 0.816742 | 4.73E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene066565 | 0.817097 | 3.93E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene066565 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene066565 | 0.835728 | 1.42E-56 | -1.69E-46 |
| MS.gene052916 | MS.gene066565 | 0.816394 | 5.66E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene066565 | 0.891128 | 5.27E-74 | -1.69E-46 |
| MS.gene053203 | MS.gene066565 | 0.872231 | 3.73E-67 | -1.69E-46 |
| MS.gene053207 | MS.gene066565 | 0.853985 | 1.66E-61 | -1.69E-46 |
| MS.gene053213 | MS.gene066565 | 0.88053 | 5.09E-70 | -1.69E-46 |
| MS.gene053284 | MS.gene066565 | 0.81235 | 4.43E-51 | -1.69E-46 |
| MS.gene053285 | MS.gene066565 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene066565 | 0.885266 | 9.43E-72 | -1.69E-46 |
| MS.gene053420 | MS.gene066565 | -0.814563 | 1.45E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene066565 | 0.814513 | 1.48E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene066565 | 0.841439 | 4.75E-58 | -1.69E-46 |
| MS.gene053480 | MS.gene066565 | 0.834658 | 2.64E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene066565 | 0.853028 | 3.13E-61 | -1.69E-46 |
| MS.gene053626 | MS.gene066565 | 0.810891 | 9.20E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene066565 | 0.84035 | 9.17E-58 | -1.69E-46 |
| MS.gene053633 | MS.gene066565 | 0.836903 | 7.12E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene066565 | 0.856854 | 2.43E-62 | -1.69E-46 |
| MS.gene054408 | MS.gene066565 | 0.850728 | 1.41E-60 | -1.69E-46 |
| MS.gene054595 | MS.gene066565 | 0.851844 | 6.81E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene066565 | 0.894675 | 1.97E-75 | -1.69E-46 |
| MS.gene054616 | MS.gene066565 | -0.805751 | 1.15E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene066565 | 0.843651 | 1.23E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene066565 | 0.882648 | 8.73E-71 | -1.69E-46 |
| MS.gene05470 | MS.gene066565 | 0.853572 | 2.19E-61 | -1.69E-46 |
| MS.gene054927 | MS.gene066565 | 0.800593 | 1.34E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene066565 | 0.895038 | 1.40E-75 | -1.69E-46 |
| MS.gene055206 | MS.gene066565 | 0.822294 | 2.56E-53 | -1.69E-46 |
| MS.gene055224 | MS.gene066565 | 0.82085 | 5.52E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene066565 | 0.890065 | 1.38E-73 | -1.69E-46 |
| MS.gene055499 | MS.gene066565 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene066565 | 0.890653 | 8.11E-74 | -1.69E-46 |
| MS.gene055577 | MS.gene066565 | 0.894575 | 2.17E-75 | -1.69E-46 |
| MS.gene055634 | MS.gene066565 | 0.844942 | 5.53E-59 | -1.69E-46 |
| MS.gene055636 | MS.gene066565 | 0.837787 | 4.23E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene066565 | 0.848805 | 4.85E-60 | -1.69E-46 |
| MS.gene055647 | MS.gene066565 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene066565 | 0.841994 | 3.39E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene066565 | 0.87782 | 4.62E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene066565 | 0.878979 | 1.81E-69 | -1.69E-46 |
| MS.gene055751 | MS.gene066565 | 0.885731 | 6.32E-72 | -1.69E-46 |
| MS.gene055776 | MS.gene066565 | 0.836109 | 1.13E-56 | -1.69E-46 |
| MS.gene055849 | MS.gene066565 | 0.815127 | 1.08E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene066565 | 0.858272 | 9.23E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene066565 | 0.867951 | 9.37E-66 | -1.69E-46 |
| MS.gene056083 | MS.gene066565 | 0.821119 | 4.78E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene066565 | 0.846333 | 2.32E-59 | -1.69E-46 |
| MS.gene056387 | MS.gene066565 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene056409 | MS.gene066565 | 0.858521 | 7.78E-63 | -1.69E-46 |
| MS.gene056449 | MS.gene066565 | 0.861869 | 7.57E-64 | -1.69E-46 |
| MS.gene056450 | MS.gene066565 | 0.858619 | 7.28E-63 | -1.69E-46 |
| MS.gene056504 | MS.gene066565 | 0.887266 | 1.66E-72 | -1.69E-46 |
| MS.gene056510 | MS.gene066565 | 0.909733 | 4.11E-82 | -1.69E-46 |
| MS.gene056549 | MS.gene066565 | 0.87782 | 4.62E-69 | -1.69E-46 |
| MS.gene056610 | MS.gene066565 | 0.838528 | 2.73E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene066565 | 0.901959 | 1.58E-78 | -1.69E-46 |
| MS.gene056692 | MS.gene066565 | 0.892896 | 1.04E-74 | -1.69E-46 |
| MS.gene056898 | MS.gene066565 | 0.827958 | 1.17E-54 | -1.69E-46 |
| MS.gene056910 | MS.gene066565 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene056946 | MS.gene066565 | 0.808787 | 2.61E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene066565 | 0.814978 | 1.17E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene066565 | 0.826525 | 2.59E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene066565 | 0.837832 | 4.12E-57 | -1.69E-46 |
| MS.gene057658 | MS.gene066565 | 0.829951 | 3.86E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene066565 | 0.90507 | 6.33E-80 | -1.69E-46 |
| MS.gene057857 | MS.gene066565 | 0.828532 | 8.53E-55 | -1.69E-46 |
| MS.gene057872 | MS.gene066565 | 0.833802 | 4.33E-56 | -1.69E-46 |
| MS.gene05787 | MS.gene066565 | 0.835816 | 1.35E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene066565 | 0.813253 | 2.81E-51 | -1.69E-46 |
| MS.gene057986 | MS.gene066565 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene066565 | 0.802793 | 4.74E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene066565 | 0.814778 | 1.30E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene066565 | 0.808852 | 2.53E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene066565 | -0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene058335 | MS.gene066565 | 0.850566 | 1.56E-60 | -1.69E-46 |
| MS.gene058338 | MS.gene066565 | 0.817139 | 3.85E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene066565 | 0.871755 | 5.36E-67 | -1.69E-46 |
| MS.gene058419 | MS.gene066565 | 0.877818 | 4.63E-69 | -1.69E-46 |
| MS.gene058544 | MS.gene066565 | 0.845425 | 4.09E-59 | -1.69E-46 |
| MS.gene058719 | MS.gene066565 | 0.863252 | 2.84E-64 | -1.69E-46 |
| MS.gene058723 | MS.gene066565 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene066565 | 0.916468 | 1.72E-85 | -1.69E-46 |
| MS.gene058838 | MS.gene066565 | 0.833719 | 4.54E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene066565 | 0.830487 | 2.86E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene066565 | 0.896999 | 2.15E-76 | -1.69E-46 |
| MS.gene059023 | MS.gene066565 | 0.882161 | 1.31E-70 | -1.69E-46 |
| MS.gene059026 | MS.gene066565 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene066565 | 0.842341 | 2.74E-58 | -1.69E-46 |
| MS.gene059079 | MS.gene066565 | 0.854489 | 1.19E-61 | -1.69E-46 |
| MS.gene059102 | MS.gene066565 | -0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene05912 | MS.gene066565 | 0.877986 | 4.04E-69 | -1.69E-46 |
| MS.gene05913 | MS.gene066565 | 0.81994 | 8.92E-53 | -1.69E-46 |
| MS.gene059181 | MS.gene066565 | 0.825272 | 5.13E-54 | -1.69E-46 |
| MS.gene059305 | MS.gene066565 | 0.822162 | 2.75E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene066565 | 0.836282 | 1.03E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene066565 | 0.811053 | 8.48E-51 | -1.69E-46 |
| MS.gene059479 | MS.gene066565 | -0.81865 | 1.75E-52 | -1.69E-46 |
| MS.gene059526 | MS.gene066565 | -0.829577 | 4.76E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene066565 | 0.8983 | 6.07E-77 | -1.69E-46 |
| MS.gene059718 | MS.gene066565 | 0.894645 | 2.03E-75 | -1.69E-46 |
| MS.gene059756 | MS.gene066565 | 0.867016 | 1.87E-65 | -1.69E-46 |
| MS.gene059801 | MS.gene066565 | 0.882476 | 1.01E-70 | -1.69E-46 |
| MS.gene059837 | MS.gene066565 | 0.832271 | 1.04E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene066565 | 0.882452 | 1.03E-70 | -1.69E-46 |
| MS.gene059902 | MS.gene066565 | 0.83649 | 9.08E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene066565 | 0.804643 | 1.96E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene066565 | 0.868347 | 6.98E-66 | -1.69E-46 |
| MS.gene060193 | MS.gene066565 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene066565 | -0.827624 | 1.41E-54 | -1.69E-46 |
| MS.gene060602 | MS.gene066565 | -0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene066565 | 0.899718 | 1.50E-77 | -1.69E-46 |
| MS.gene060762 | MS.gene066565 | 0.907905 | 3.06E-81 | -1.69E-46 |
| MS.gene060778 | MS.gene066565 | 0.849831 | 2.51E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene066565 | 0.903862 | 2.24E-79 | -1.69E-46 |
| MS.gene060823 | MS.gene066565 | -0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene066565 | 0.841608 | 4.28E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene066565 | 0.890242 | 1.18E-73 | -1.69E-46 |
| MS.gene061134 | MS.gene066565 | 0.839829 | 1.25E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene066565 | 0.881309 | 2.67E-70 | -1.69E-46 |
| MS.gene061171 | MS.gene066565 | 0.855617 | 5.59E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene066565 | 0.83352 | 5.09E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066565 | MS.gene047751 | PPI |
| MS.gene066565 | MS.gene010470 | PPI |
| MS.gene89849 | MS.gene066565 | PPI |
| MS.gene066565 | MS.gene59336 | PPI |
| MS.gene066565 | MS.gene89848 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066565.t1 | MTR_7g113480 | 94.849 | 563 | 29 | 0 | 4 | 566 | 69 | 631 | 0.0 | 1106 |
| MS.gene066565.t1 | MTR_7g113480 | 95.018 | 562 | 28 | 0 | 4 | 565 | 69 | 630 | 0.0 | 1103 |
| MS.gene066565.t1 | MTR_7g113480 | 95.018 | 562 | 28 | 0 | 4 | 565 | 69 | 630 | 0.0 | 1103 |
| MS.gene066565.t1 | MTR_7g113480 | 96.996 | 466 | 14 | 0 | 100 | 565 | 1 | 466 | 0.0 | 932 |
| MS.gene066565.t1 | MTR_7g113480 | 96.796 | 437 | 14 | 0 | 129 | 565 | 17 | 453 | 0.0 | 872 |
| MS.gene066565.t1 | MTR_5g019600 | 43.986 | 582 | 279 | 10 | 20 | 565 | 5 | 575 | 3.24e-155 | 461 |
| MS.gene066565.t1 | MTR_5g019600 | 38.710 | 465 | 237 | 10 | 20 | 447 | 5 | 458 | 8.20e-96 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066565.t1 | AT3G05350 | 75.410 | 549 | 135 | 0 | 17 | 565 | 80 | 628 | 0.0 | 887 |
| MS.gene066565.t1 | AT4G36760 | 42.241 | 580 | 280 | 9 | 20 | 565 | 5 | 563 | 1.17e-157 | 466 |
| MS.gene066565.t1 | AT4G36760 | 41.869 | 578 | 285 | 8 | 20 | 565 | 5 | 563 | 1.47e-157 | 466 |
| MS.gene066565.t1 | AT4G36760 | 42.241 | 580 | 280 | 9 | 20 | 565 | 5 | 563 | 2.39e-157 | 466 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAATAAATTATTCTTAT+TGG | 0.138070 | 7.4:-3308964 | MS.gene066565:CDS |
| CTGCTGCCCTTGCTCAGTTC+TGG | 0.152105 | 7.4:-3309576 | MS.gene066565:CDS |
| GAGAAACAGGGGAGGATTTC+TGG | 0.159854 | 7.4:+3310417 | None:intergenic |
| ATCCAATAAGAATAATTTAT+TGG | 0.200077 | 7.4:+3308962 | None:intergenic |
| TGCACTCTAACAGGCTTATT+TGG | 0.207462 | 7.4:+3311338 | None:intergenic |
| CATTTGCACGATCCTTTCTT+TGG | 0.216716 | 7.4:-3308580 | MS.gene066565:CDS |
| CTCAAAACAAGCTGGTTTCT+TGG | 0.256747 | 7.4:-3309476 | MS.gene066565:CDS |
| CGACGGAGGGCGGTGAGTTT+GGG | 0.259327 | 7.4:+3312407 | None:intergenic |
| GTGTTTCCGGTGACCCTCTT+GGG | 0.271458 | 7.4:-3304342 | MS.gene066565:CDS |
| CAATTCTATGATGATTCTTT+TGG | 0.272611 | 7.4:+3314217 | None:intergenic |
| ATTACACGGACAGTTCATTT+TGG | 0.274255 | 7.4:-3308906 | MS.gene066565:CDS |
| TGCTGCCCTTGCTCAGTTCT+GGG | 0.276895 | 7.4:-3309575 | MS.gene066565:CDS |
| ACGACGGAGGGCGGTGAGTT+TGG | 0.277564 | 7.4:+3312406 | None:intergenic |
| GAATGCAAGATTGTCATTTA+AGG | 0.279658 | 7.4:-3310358 | MS.gene066565:intron |
| CAAATCTTGTGGATGAAATA+TGG | 0.290355 | 7.4:-3311382 | MS.gene066565:CDS |
| CAGCACGAGGTGCCGCCCTT+TGG | 0.301925 | 7.4:-3310586 | MS.gene066565:CDS |
| CACTCTTTCTCTCTAGTTGT+TGG | 0.302750 | 7.4:+3308879 | None:intergenic |
| ATGGCCTTTGCTAGAGAAAC+AGG | 0.313957 | 7.4:+3310404 | None:intergenic |
| GTGCATGACCTAAAGTATTC+TGG | 0.318859 | 7.4:-3311320 | MS.gene066565:CDS |
| CGATCCTTTCTTTGGAAAGT+TGG | 0.321545 | 7.4:-3308572 | MS.gene066565:CDS |
| TCTGTCGCATGCAGCTTTAT+AGG | 0.322788 | 7.4:+3310526 | None:intergenic |
| GGCAACGAATGGGGTGTTTC+CGG | 0.330298 | 7.4:-3304355 | MS.gene066565:CDS |
| GGTGTTTCCGGTGACCCTCT+TGG | 0.335050 | 7.4:-3304343 | MS.gene066565:CDS |
| CATCTAAACCAGAATACTTT+AGG | 0.348338 | 7.4:+3311312 | None:intergenic |
| TTTAGGTCATGCACTCTAAC+AGG | 0.349127 | 7.4:+3311329 | None:intergenic |
| GTACTACAACTCTCTGGTTC+TGG | 0.354412 | 7.4:+3308993 | None:intergenic |
| TCTGAGGTCTGAACTTGTTC+AGG | 0.366333 | 7.4:-3311270 | MS.gene066565:CDS |
| GGTAGAAGACAATACATATC+TGG | 0.367129 | 7.4:-3312296 | MS.gene066565:CDS |
| CAAAAGAATCATCATAGAAT+TGG | 0.375194 | 7.4:-3314216 | MS.gene066565:intron |
| CCAACGATAAAGCCGCTCTT+TGG | 0.378742 | 7.4:-3312241 | MS.gene066565:CDS |
| CCCTTGCTCAGTTCTGGGAT+TGG | 0.382341 | 7.4:-3309570 | MS.gene066565:CDS |
| AAATTATTCTTATTGGATAG+TGG | 0.384241 | 7.4:-3308957 | MS.gene066565:CDS |
| TCTTGATCAGGCAGTCTTCC+CGG | 0.384970 | 7.4:-3308630 | MS.gene066565:CDS |
| AAGACCATGCTTTCGGCATT+CGG | 0.388615 | 7.4:-3308305 | MS.gene066565:CDS |
| CAAAACCAGGGGTATCTTCC+GGG | 0.391835 | 7.4:+3308612 | None:intergenic |
| GTTTCACGACGGCAACGAAT+GGG | 0.394487 | 7.4:-3304365 | MS.gene066565:CDS |
| CAAGGTATCAGTTACCGTTA+TGG | 0.404564 | 7.4:-3308384 | MS.gene066565:CDS |
| GAGGATTTCTGGACAGCAAT+GGG | 0.404605 | 7.4:+3310428 | None:intergenic |
| TGAGTGGCTCAATGAGGTTT+TGG | 0.404752 | 7.4:-3312026 | MS.gene066565:CDS |
| GATCCTTTCTTTGGAAAGTT+GGG | 0.415093 | 7.4:-3308571 | MS.gene066565:CDS |
| GTCAATGGAGACATCGGGTT+TGG | 0.420411 | 7.4:+3312376 | None:intergenic |
| TATTATGAAGACCATGCTTT+CGG | 0.430181 | 7.4:-3308312 | MS.gene066565:CDS |
| ATCAAATATGCATACACAAC+AGG | 0.436777 | 7.4:+3310951 | None:intergenic |
| TGCTTTCGGCATTCGGATTG+AGG | 0.439904 | 7.4:-3308298 | MS.gene066565:intron |
| CTATGTTTGCTTTCTTCAAG+TGG | 0.444865 | 7.4:+3310865 | None:intergenic |
| CTCATGCGTGCTGGAAATCC+AGG | 0.447160 | 7.4:-3312064 | MS.gene066565:CDS |
| TATTTGATTGTGGAGATTGA+TGG | 0.448485 | 7.4:-3310936 | MS.gene066565:CDS |
| AGAAGCAACTGAACTCCAAT+TGG | 0.450371 | 7.4:-3312090 | MS.gene066565:CDS |
| AGGGATAATGTAAGCGTCAA+TGG | 0.452562 | 7.4:+3312361 | None:intergenic |
| GGTTTCACGACGGCAACGAA+TGG | 0.456250 | 7.4:-3304366 | MS.gene066565:CDS |
| CTCTGGTGAGCGTCTTGAGA+AGG | 0.456914 | 7.4:+3312341 | None:intergenic |
| TAGTGTATGATAGCACCATT+TGG | 0.458901 | 7.4:+3309020 | None:intergenic |
| GGAAAGTTGGGCTTGACTAC+AGG | 0.465682 | 7.4:-3308559 | MS.gene066565:CDS |
| GGTGAGTTTGGGGTCGGAGT+CGG | 0.466526 | 7.4:+3312418 | None:intergenic |
| GAGTTCATCGCTCAATGTTA+CGG | 0.471488 | 7.4:-3312317 | MS.gene066565:CDS |
| AGCACGCATGAGAATCCAAT+TGG | 0.472766 | 7.4:+3312075 | None:intergenic |
| AGGTCTGAACTTGTTCAGGC+TGG | 0.477425 | 7.4:-3311266 | MS.gene066565:CDS |
| TCACTAGTAGTAGGTACTCC+TGG | 0.480886 | 7.4:+3312046 | None:intergenic |
| ACAGGCTTATTTGGAGGCTC+CGG | 0.487763 | 7.4:+3311347 | None:intergenic |
| TGTTTCCGGTGACCCTCTTG+GGG | 0.488881 | 7.4:-3304341 | MS.gene066565:CDS |
| AAGCCCAACTTTCCAAAGAA+AGG | 0.493763 | 7.4:+3308568 | None:intergenic |
| AATTGGATTCTCATGCGTGC+TGG | 0.493816 | 7.4:-3312073 | MS.gene066565:CDS |
| TGATGGTCGCTACTTTCTCC+AGG | 0.500919 | 7.4:-3312216 | MS.gene066565:intron |
| GGGTCATATAGCTCTTGATC+AGG | 0.501429 | 7.4:-3308642 | MS.gene066565:CDS |
| TCGGATACAATCGAATTGTA+TGG | 0.504696 | 7.4:+3310834 | None:intergenic |
| ACAAAACCAGGGGTATCTTC+CGG | 0.511682 | 7.4:+3308611 | None:intergenic |
| AATTGCGTGGTTGTTGAACT+TGG | 0.515023 | 7.4:-3311210 | MS.gene066565:intron |
| ATTGAGCGATGAACTCGCTC+TGG | 0.515881 | 7.4:+3312324 | None:intergenic |
| TTCTGTTGATATCCTATCGT+TGG | 0.516333 | 7.4:+3309531 | None:intergenic |
| TTGAGCCACTCACTAGTAGT+AGG | 0.517366 | 7.4:+3312037 | None:intergenic |
| AAAGCCGCTCTTTGGACTGA+TGG | 0.518944 | 7.4:-3312233 | MS.gene066565:CDS |
| AACGGTAACTGATACCTTGA+GGG | 0.519014 | 7.4:+3308388 | None:intergenic |
| GGTTCAGGTTCCGGTCCAAA+TGG | 0.521296 | 7.4:-3309035 | MS.gene066565:intron |
| AGTATGATACCTGCAAAACT+CGG | 0.521542 | 7.4:+3308850 | None:intergenic |
| GGAGGATTTCTGGACAGCAA+TGG | 0.521613 | 7.4:+3310427 | None:intergenic |
| TTTGTACAATTCAAATCTTG+TGG | 0.526383 | 7.4:-3311393 | MS.gene066565:CDS |
| GAGTTTCGCTCAAAACAAGC+TGG | 0.527663 | 7.4:-3309484 | MS.gene066565:CDS |
| ACGAGGTGCCGCCCTTTGGT+TGG | 0.529461 | 7.4:-3310582 | MS.gene066565:CDS |
| AATGCATCCAGCACAAAACC+AGG | 0.530179 | 7.4:+3308599 | None:intergenic |
| ACTCTAACAGGCTTATTTGG+AGG | 0.530606 | 7.4:+3311341 | None:intergenic |
| AGAAAGCAAACATAGAGATC+AGG | 0.530867 | 7.4:-3310857 | MS.gene066565:CDS |
| TTGGCGCCAGGTGCTAGAGT+TGG | 0.531454 | 7.4:-3312007 | MS.gene066565:CDS |
| GTCTTCCCGGAAGATACCCC+TGG | 0.535450 | 7.4:-3308617 | MS.gene066565:CDS |
| ATAGGAACTGGGCATGGTGT+AGG | 0.540303 | 7.4:-3308435 | MS.gene066565:intron |
| AGTGGTGCTCAATATGTTGA+TGG | 0.542016 | 7.4:-3308939 | MS.gene066565:CDS |
| AATTTGACCCCTCTAGTGAA+TGG | 0.542154 | 7.4:-3308360 | MS.gene066565:CDS |
| GCATACACAACAGGTGAATG+TGG | 0.543084 | 7.4:+3310960 | None:intergenic |
| TGTACAAATAAACGAGCTCA+TGG | 0.543589 | 7.4:+3311408 | None:intergenic |
| AGAGGAAGTATCCAACCAAA+GGG | 0.548045 | 7.4:+3310571 | None:intergenic |
| TCCACAGTACTACAACTCTC+TGG | 0.548101 | 7.4:+3308987 | None:intergenic |
| GACGGAGGGCGGTGAGTTTG+GGG | 0.551049 | 7.4:+3312408 | None:intergenic |
| TAAGCGTCAATGGAGACATC+GGG | 0.551937 | 7.4:+3312371 | None:intergenic |
| ATGAAATATGGAAAGAAGCT+AGG | 0.553831 | 7.4:-3311370 | MS.gene066565:CDS |
| CAATCATGCCATTCACTAGA+GGG | 0.554387 | 7.4:+3308352 | None:intergenic |
| TAGGTAAACAAGAACAGTGA+GGG | 0.554662 | 7.4:-3304399 | MS.gene066565:CDS |
| GCCAATCCCAGAACTGAGCA+AGG | 0.554706 | 7.4:+3309569 | None:intergenic |
| TCTGGTGAGCGTCTTGAGAA+GGG | 0.558557 | 7.4:+3312342 | None:intergenic |
| CCAAAGAGCGGCTTTATCGT+TGG | 0.561864 | 7.4:+3312241 | None:intergenic |
| GCATGGTCTTCATAATAGCC+AGG | 0.566782 | 7.4:+3308318 | None:intergenic |
| TTCAAAAGTTACTGAAGAGG+TGG | 0.572917 | 7.4:-3310892 | MS.gene066565:CDS |
| CTCCCCTGTTTCTCTAGCAA+AGG | 0.578494 | 7.4:-3310408 | MS.gene066565:CDS |
| AATATGGAAAGAAGCTAGGC+CGG | 0.579709 | 7.4:-3311366 | MS.gene066565:CDS |
| GAGGGGTCAAATTTCCATAA+CGG | 0.581522 | 7.4:+3308370 | None:intergenic |
| GTAAGCGTCAATGGAGACAT+CGG | 0.582195 | 7.4:+3312370 | None:intergenic |
| GTATGATACCTGCAAAACTC+GGG | 0.582642 | 7.4:+3308851 | None:intergenic |
| TTTGGAGAAGAGACGACGGA+GGG | 0.584005 | 7.4:+3312394 | None:intergenic |
| AATGTTCATGAAGGCCCTCA+AGG | 0.587601 | 7.4:-3308402 | MS.gene066565:CDS |
| TCTTTCAGTTTGGCAGCACG+AGG | 0.589915 | 7.4:-3310599 | MS.gene066565:intron |
| CTGTCATCTATATAGGAACT+GGG | 0.594643 | 7.4:-3308446 | MS.gene066565:intron |
| TATGATAGCACCATTTGGAC+CGG | 0.600597 | 7.4:+3309025 | None:intergenic |
| TTTCACGACGGCAACGAATG+GGG | 0.602681 | 7.4:-3304364 | MS.gene066565:CDS |
| ATCTATATAGGAACTGGGCA+TGG | 0.605092 | 7.4:-3308441 | MS.gene066565:intron |
| ATGGCACGACTGACATTACA+CGG | 0.605881 | 7.4:-3308920 | MS.gene066565:CDS |
| CAGAGGAAGTATCCAACCAA+AGG | 0.606761 | 7.4:+3310570 | None:intergenic |
| TTGCTGTCAGCCTTGAACCA+TGG | 0.609139 | 7.4:+3304314 | None:intergenic |
| GTTTCCGGTGACCCTCTTGG+GGG | 0.609696 | 7.4:-3304340 | MS.gene066565:CDS |
| CAATCCGAATGCCGAAAGCA+TGG | 0.612301 | 7.4:+3308301 | None:intergenic |
| ACAATCATGCCATTCACTAG+AGG | 0.615289 | 7.4:+3308351 | None:intergenic |
| GGAGAAGAGACGACGGAGGG+CGG | 0.615870 | 7.4:+3312397 | None:intergenic |
| AAACATAAAACTGAGAGCAA+AGG | 0.618764 | 7.4:-3310482 | MS.gene066565:CDS |
| CGATTCAAAAGTTACTGAAG+AGG | 0.618859 | 7.4:-3310895 | MS.gene066565:CDS |
| TGGCCTTTGCTAGAGAAACA+GGG | 0.621317 | 7.4:+3310405 | None:intergenic |
| GAGGGCGGTGAGTTTGGGGT+CGG | 0.624003 | 7.4:+3312412 | None:intergenic |
| TCAATGCCAACTCTAGCACC+TGG | 0.624673 | 7.4:+3312001 | None:intergenic |
| TGTGTATGCATATTTGATTG+TGG | 0.629245 | 7.4:-3310946 | MS.gene066565:CDS |
| ACCAGAGAGTTGTAGTACTG+TGG | 0.631950 | 7.4:-3308988 | MS.gene066565:CDS |
| GGCCTTTGCTAGAGAAACAG+GGG | 0.632956 | 7.4:+3310406 | None:intergenic |
| CATACACAACAGGTGAATGT+GGG | 0.637275 | 7.4:+3310961 | None:intergenic |
| TAACGGTAACTGATACCTTG+AGG | 0.638013 | 7.4:+3308387 | None:intergenic |
| GTTGGGCTTGACTACAGGCA+TGG | 0.641820 | 7.4:-3308554 | MS.gene066565:intron |
| GCTGCATTGAATGTTCATGA+AGG | 0.642355 | 7.4:-3308411 | MS.gene066565:CDS |
| CGTCGAAATTGTCATCTCTG+AGG | 0.649648 | 7.4:-3311286 | MS.gene066565:CDS |
| CCGCGCTTGATGAAATTGCG+TGG | 0.650905 | 7.4:-3311223 | MS.gene066565:CDS |
| AGACAGAAATTACCAACGAT+AGG | 0.652102 | 7.4:-3309543 | MS.gene066565:CDS |
| ATGCATCCAGCACAAAACCA+GGG | 0.653908 | 7.4:+3308600 | None:intergenic |
| ATGATTGTTAGCAATGAACC+TGG | 0.657588 | 7.4:-3308336 | MS.gene066565:CDS |
| TACTAGTGAGTGGCTCAATG+AGG | 0.661559 | 7.4:-3312032 | MS.gene066565:CDS |
| TGCATCCAGCACAAAACCAG+GGG | 0.662714 | 7.4:+3308601 | None:intergenic |
| TACAATAGCAGCATTAACAG+AGG | 0.662984 | 7.4:+3310553 | None:intergenic |
| AGGTAAACAAGAACAGTGAG+GGG | 0.664644 | 7.4:-3304398 | MS.gene066565:CDS |
| ACTAGCTTTGACACGATAAG+CGG | 0.665943 | 7.4:-3309451 | MS.gene066565:intron |
| CCAATCCCAGAACTGAGCAA+GGG | 0.665964 | 7.4:+3309570 | None:intergenic |
| GTTTGGAGAAGAGACGACGG+AGG | 0.672246 | 7.4:+3312393 | None:intergenic |
| GGAAGTATCCAACCAAAGGG+CGG | 0.677651 | 7.4:+3310574 | None:intergenic |
| GAGTACCTACTACTAGTGAG+TGG | 0.690178 | 7.4:-3312042 | MS.gene066565:CDS |
| AATCATGCCATTCACTAGAG+GGG | 0.692594 | 7.4:+3308353 | None:intergenic |
| GCGACCATCAGTCCAAAGAG+CGG | 0.693116 | 7.4:+3312229 | None:intergenic |
| AGGATTTCTGGACAGCAATG+GGG | 0.693206 | 7.4:+3310429 | None:intergenic |
| CCACGCAATTTCATCAAGCG+CGG | 0.696747 | 7.4:+3311223 | None:intergenic |
| CGGGTTTGGAGAAGAGACGA+CGG | 0.703049 | 7.4:+3312390 | None:intergenic |
| CTTTGCTAGAGAAACAGGGG+AGG | 0.705484 | 7.4:+3310409 | None:intergenic |
| TTAGGTAAACAAGAACAGTG+AGG | 0.710571 | 7.4:-3304400 | MS.gene066565:intron |
| GGTAAACAAGAACAGTGAGG+GGG | 0.733481 | 7.4:-3304397 | MS.gene066565:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3304320 | 3314253 | 3304320 | ID=MS.gene066565 |
| chr7.4 | mRNA | 3304320 | 3314253 | 3304320 | ID=MS.gene066565.t1;Parent=MS.gene066565 |
| chr7.4 | exon | 3314217 | 3314253 | 3314217 | ID=MS.gene066565.t1.exon1;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3314217 | 3314253 | 3314217 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3312217 | 3312443 | 3312217 | ID=MS.gene066565.t1.exon2;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3312217 | 3312443 | 3312217 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3311997 | 3312116 | 3311997 | ID=MS.gene066565.t1.exon3;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3311997 | 3312116 | 3311997 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3311211 | 3311486 | 3311211 | ID=MS.gene066565.t1.exon4;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3311211 | 3311486 | 3311211 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3310825 | 3310997 | 3310825 | ID=MS.gene066565.t1.exon5;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3310825 | 3310997 | 3310825 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3310359 | 3310613 | 3310359 | ID=MS.gene066565.t1.exon6;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3310359 | 3310613 | 3310359 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3309452 | 3309603 | 3309452 | ID=MS.gene066565.t1.exon7;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3309452 | 3309603 | 3309452 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3308860 | 3309050 | 3308860 | ID=MS.gene066565.t1.exon8;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3308860 | 3309050 | 3308860 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3308555 | 3308663 | 3308555 | ID=MS.gene066565.t1.exon9;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3308555 | 3308663 | 3308555 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3308299 | 3308453 | 3308299 | ID=MS.gene066565.t1.exon10;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3308299 | 3308453 | 3308299 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| chr7.4 | exon | 3304320 | 3304418 | 3304320 | ID=MS.gene066565.t1.exon11;Parent=MS.gene066565.t1 |
| chr7.4 | CDS | 3304320 | 3304418 | 3304320 | ID=cds.MS.gene066565.t1;Parent=MS.gene066565.t1 |
| Gene Sequence |
| Protein sequence |
