AlfalfaGEDB | MS.gene71742

M. sativa cultivar XinJiangDaYe / MS.gene71742

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00175.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71742.t1	AES62827.2	98.2	271	5	0	1	271	1	271	1.30E-144	522.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71742.t1	P43394	54.2	249	108	2	26	268	65	313	2.0e-72	273.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71742.t1	G7IAV6	98.2	271	5	0	1	271	1	271	9.6e-145	522.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene71742	0.834063	3.72E-56	-1.69E-46
MS.gene049173	MS.gene71742	0.828082	1.10E-54	-1.69E-46
MS.gene049217	MS.gene71742	0.85266	3.99E-61	-1.69E-46
MS.gene049222	MS.gene71742	0.871006	9.49E-67	-1.69E-46
MS.gene049232	MS.gene71742	0.844785	6.10E-59	-1.69E-46
MS.gene049285	MS.gene71742	0.866622	2.49E-65	-1.69E-46
MS.gene049320	MS.gene71742	0.864108	1.54E-64	-1.69E-46
MS.gene049627	MS.gene71742	0.834432	3.01E-56	-1.69E-46
MS.gene049633	MS.gene71742	0.834999	2.17E-56	-1.69E-46
MS.gene049865	MS.gene71742	0.805112	1.56E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71742.t1	MTR_1g108710	98.155	271	5	0	1	271	1	271	0.0	543
MS.gene71742.t1	MTR_1g108710	98.008	251	5	0	1	251	24	274	0.0	504

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71742.t1	AT1G15140	71.377	276	72	3	1	271	22	295	1.48e-138	392
MS.gene71742.t1	AT1G15140	70.306	229	61	3	1	224	22	248	9.54e-110	318
MS.gene71742.t1	AT1G15140	70.306	229	61	3	1	224	22	248	9.54e-110	318

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Find 94 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTTGCGAGTCGGTGA+CGG	0.551990	1.1:+77684857	None:intergenic
AACGTGGAAGAGTGACTCAG+CGG	0.719906	1.1:+77684771	None:intergenic
AAGAACAGTTCCAAATTTCT+CGG	0.503898	1.1:+77684477	None:intergenic
AAGCGGCGTAGGATGGACAT+GGG	0.692247	1.1:+77684907	None:intergenic
ACAGTTCCAAATTTCTCGGG+TGG	0.560614	1.1:+77684481	None:intergenic
ACATCTATTCTTGTTGCTGA+TGG	0.438700	1.1:-77681507	MS.gene71742:CDS
ACCGGCGCGTGTGTGAGACG+TGG	0.704486	1.1:+77684717	None:intergenic
ACTGTTCTTGTCTTTGCCAC+TGG	0.391138	1.1:-77684463	MS.gene71742:CDS
AGAACAGTTCCAAATTTCTC+GGG	0.523438	1.1:+77684478	None:intergenic
AGCACCAGTTGACAAAGGGT+TGG	0.602600	1.1:+77682586	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATCTTTACCACTTGA+AGG	+	chr1.1:77683721-77683740	None:intergenic	30.0%
AAGAACAGTTCCAAATTTCT+CGG	+	chr1.1:77681903-77681922	None:intergenic	30.0%
AAGAATCACCAAAACTAACA+AGG	-	chr1.1:77684309-77684328	MS.gene71742:intron	30.0%
AAGTAGTGATTTACATGCAA+AGG	+	chr1.1:77683285-77683304	None:intergenic	30.0%
AATAATGTAGTTGCAGTTGT+TGG	+	chr1.1:77684243-77684262	None:intergenic	30.0%
ACACTTTATAGCACTTACAT+TGG	+	chr1.1:77683012-77683031	None:intergenic	30.0%
ACAGGACACAAAATTTCTAA+AGG	+	chr1.1:77682236-77682255	None:intergenic	30.0%
ATAGGAGAGATTTAAAGACT+GGG	-	chr1.1:77683580-77683599	MS.gene71742:intron	30.0%
ATTATTCAAAAATAGGGTCC+TGG	-	chr1.1:77684257-77684276	MS.gene71742:intron	30.0%
CACATTCAAAATCATACTCA+AGG	+	chr1.1:77683218-77683237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	77681473	77684926	77681473	ID=MS.gene71742
chr1.1	mRNA	77681473	77684926	77681473	ID=MS.gene71742.t1;Parent=MS.gene71742
chr1.1	exon	77684451	77684926	77684451	ID=MS.gene71742.t1.exon1;Parent=MS.gene71742.t1
chr1.1	CDS	77684451	77684926	77684451	ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1
chr1.1	exon	77682900	77682999	77682900	ID=MS.gene71742.t1.exon2;Parent=MS.gene71742.t1
chr1.1	CDS	77682900	77682999	77682900	ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1
chr1.1	exon	77682720	77682815	77682720	ID=MS.gene71742.t1.exon3;Parent=MS.gene71742.t1
chr1.1	CDS	77682720	77682815	77682720	ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1
chr1.1	exon	77682556	77682636	77682556	ID=MS.gene71742.t1.exon4;Parent=MS.gene71742.t1
chr1.1	CDS	77682556	77682636	77682556	ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1
chr1.1	exon	77681473	77681535	77681473	ID=MS.gene71742.t1.exon5;Parent=MS.gene71742.t1
chr1.1	CDS	77681473	77681535	77681473	ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1

Gene Sequence

>MS.gene71742

ATGTCCATCCTACGCCGCTTCAATCTAAACCCCACCAACCACCGTCTCCGTCACCGACTCGCAACCCTTTCCGCCGCCGTACGTCAAGACACCACCGTCTGGACTCCAGCTCCTCTCTCCGAGATCGAACCTGCCGCTGAGTCACTCTTCCACGTTTCCATCGACGTTTCCGACGCCCCTGACCTTGCCACGTCTCACACACGCGCCGGTCAGTATCTTCAGCTTAAAGTCGGTGATTCGCCGAAACCGTCGTTTCTTGCTATCGCTTCGCCGCCGAAGCTTGCGATTAAGAGTGGTGTGTTTGAGTTTTTGGTGAAGAGTGTTGTTGGGTCCACTGCAGAAGCGTTGTGTGGGTTGAAGAAAGGGGATGTTGTTGAGCTTAGTCCGGTTATGGGGAATGGGTTTGATATTAGTCGGATCGACCCACCCGAGAAATTTGGAACTGTTCTTGTCTTTGCCACTGGATCCGGAATTAGGTCAGTTTCTGCCTCAATTTGGGTTGAAAATGTTAGGATTGTTATCTTATTATTTTCCAAAATTTGATTTGGTGTTGATAATTTTCAAAGCTGAATTATAAATTCTCTTGCAATGCTGTAGTAAACATGTTAATTTTGTTTGAGCATATTAAATAAATCAGTCGACTATTCATTCCTTGTATAATTGTCAGTATTAAGGAGAATATTGCATCTTCTAGTATTCTTTGTTTTATTGTCAATCTATCTTCGCATTTCGTATTTGTTATGATCTAGTAAAGTAGGCCCCTTTAGAAATTTTGTGTCCTGTTAGTGATTCATTGGCACTATGGTCTTCAATATGATTTTGTGTTGCAGATATTAAGATTATGGTCTAAATAATAAAGCATTGTTTCCTATATATATATATGTATTATTAGTGCCACTCTGTTCGGAGTTTTTTGTCATGTTTACATTAGAAAACTAAGAAGCTATTAACAATTGGCGTTGCCTTTAGGTTGTGAATGTGTCATTGGTGGATAACCTAACTGATAGACAGTCGAGGGGAACTAGGAGATCTATGTTAATAGCCAAAGAAAGTAAGTGCAAGAGTTTGATCCTTAGAATGATATGGATTGTACTGAATGTACTCGGAGGAATAACAATCAACACAATAACATCGAATCAATATATTTAGGGAATAGAAATATTAGAAAGTAAAAGATAGAAGAAGAAGAAGCTAAGCACAAGTCCATAGGGAGAAGGAGACTTTTCTTCAATTTTCTTCATACCCATTATTGATCATCATTTTCCTATTTATGTACAAATCCAAGCTTCCTTGATTTTACGATGAATAGCCACATGTCAATTTGCCTCGACCAATTATGTTATGCCACAAGCGATTTTGAATCGTAAACGACCAAGTTCCCTATTAAGTATACAATTCTTTTTCACTTATATCATGGTTCTCATTTAACTCAATTGTAACCAATGTAGCATTACTTCATTACTCGGCAGTTGAATTTCAACAGTGCTCTCAAAATTTTCGATTTTTTTATTACCTTTCGAATATAGATATTTTTGGCCAATGTAAGTGCTATAAAGTGTTTCAGCCATGGCTGTAAGAGGGCAAGTTACCTTCCTTGGTAGACTTGTAGAGTGATTGGCTTGTCTTTGTCTTGCTATTCTTTGTTCCTTTTTCTAAGGATAATATTGTTTTGTCCTTTTCTTTGAATTCATCGTTTCTACTGATGGTGTGTTTTTCACGTTCGACACATAAATTGTTTCGGACCTTGAGTATGATTTTGAATGTGAAAAACACTTTGAATGGTAGAGTTTCTGTTGCAACTCTATCTGGCCTTTGCATGTAAATCACTACTTACTATAATTGTAATGCAATATGCTGCTATTAATCCAATATTTTCTCTTTACTCTCTTTGATATTGGGTGTTATTCATTTACTTTATTGTGTGCAGTCCAATTCGGTCACTTATTGAGTCAGGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGTTAGTTGATTTGTTTGTTAGCCTTTTTACAATAACTCTGTACTGTACTAGAGCTTTATCTTACAATTTTCTTTTATGTTATAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGTAAAGTGTGTGGAATTTTGGATTTTTTTGCTTAACTACCTTCAAGTGGTAAAGATTGTTTATAGACATGATTACCTTTGCAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGTGCCTTATTATTGCTATCATCTTTCATTGTCTAGCTACATAGCCACTGTCGTTCTTGTTTAGTGACAAGAAGAAACCTATCATAGAGTGAAAGAAAGACGACAGTAATGATTGTTTTTAGGAAACCGAACCTACTAGGACTAGCTCTGGAATAAAAAGAATAATTAGCACACAGATTTTAGCCATTTCCTAATTAGGTAGGCTTCAAATAGAGCCGCGGTGATTAAAATTGCAAAGAATACGACTAAAATTTAAAACAATCAAAAGGAATTTAATCAGTTGATGCACATCGCAGAAGAAAAACTGTCTGTATAATTCAAAAATGCATGTCTCTTTTCTTGGAAGATAAAGTGCACAATCAACAAAAACATCAATTTCCTCTTTTTCTTTCTTCTTCCAACAACTGCAACTACATTATTCAAAAATAGGGTCCTGGTCGCTCACTTACTACTTGTACACCGGTAGAAGAATCACCAAAACTAACAAGGTTTTATCCTTTACAAATCCAAGACATTATTGATCCATCATACTGTCCAAAATGATGACATTGTTGTCACTCGGGCCTGGTCTAATTGGACTAGCGAGGCCGTTTTGGAAAGGATGTTCCATGGAGGAGTATGAGGGCATCATCATTGAAGGAGCTAGAGGATGGATTGCCAGTTAAGCTGGCTCTTGGGGGCAGTGGGACAGAAAACGGCACTAACACCACCGCATAAAGTATGAGAGGGTTCCAATTGGGAGAATATCATGACAAATATCAGGAAGGTCAAGATATTACTGATGTAACATATCATCTTTGCTTCATTTGATACCTTTGTTCTTTTATTGATATATCTGATGCACAATAAGTTTAGTTCACCCATGAACCAGTTAGCTGCTTCATCTCTCAATACAGTGTCCTGGTTTGTGTCAACTGGTGTTTAAAAGAGAGAGCGTCAATAAGTTTCAACTAGGATTTTACTTGCATTTCATGTTGTTATTCTGATGCATGACCTTTCAATATCAATGTTATTATTGCAGGAAATTACATCTATTCTTGTTGCTGATGGAGTATCAGCTGAGAAGATACTAAAGAACTTCTGA

Protein sequence

>MS.gene71742.t1

MSILRRFNLNPTNHRLRHRLATLSAAVRQDTTVWTPAPLSEIEPAAESLFHVSIDVSDAPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAIKSGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGSGISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTEEITSILVADGVSAEKILKNF