Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71742.t1 | AES62827.2 | 98.2 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 1.30E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71742.t1 | P43394 | 54.2 | 249 | 108 | 2 | 26 | 268 | 65 | 313 | 2.0e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71742.t1 | G7IAV6 | 98.2 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 9.6e-145 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene71742 | 0.834063 | 3.72E-56 | -1.69E-46 |
| MS.gene049173 | MS.gene71742 | 0.828082 | 1.10E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene71742 | 0.85266 | 3.99E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene71742 | 0.871006 | 9.49E-67 | -1.69E-46 |
| MS.gene049232 | MS.gene71742 | 0.844785 | 6.10E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene71742 | 0.866622 | 2.49E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene71742 | 0.864108 | 1.54E-64 | -1.69E-46 |
| MS.gene049627 | MS.gene71742 | 0.834432 | 3.01E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene71742 | 0.834999 | 2.17E-56 | -1.69E-46 |
| MS.gene049865 | MS.gene71742 | 0.805112 | 1.56E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene71742 | 0.837953 | 3.83E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene71742 | 0.877251 | 7.30E-69 | -1.69E-46 |
| MS.gene050165 | MS.gene71742 | 0.9018 | 1.86E-78 | -1.69E-46 |
| MS.gene050170 | MS.gene71742 | 0.809341 | 1.99E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene71742 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene71742 | 0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene71742 | 0.887536 | 1.31E-72 | -1.69E-46 |
| MS.gene050444 | MS.gene71742 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene71742 | 0.810071 | 1.38E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene71742 | 0.871072 | 9.03E-67 | -1.69E-46 |
| MS.gene050518 | MS.gene71742 | 0.906198 | 1.92E-80 | -1.69E-46 |
| MS.gene050577 | MS.gene71742 | 0.832095 | 1.15E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene71742 | 0.873508 | 1.39E-67 | -1.69E-46 |
| MS.gene050675 | MS.gene71742 | 0.837568 | 4.81E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene71742 | 0.841951 | 3.48E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene71742 | 0.823887 | 1.09E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene71742 | 0.802599 | 5.20E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene71742 | 0.819303 | 1.25E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene71742 | 0.815223 | 1.03E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene71742 | 0.913655 | 4.78E-84 | -1.69E-46 |
| MS.gene05087 | MS.gene71742 | 0.891386 | 4.17E-74 | -1.69E-46 |
| MS.gene050904 | MS.gene71742 | 0.893855 | 4.26E-75 | -1.69E-46 |
| MS.gene050986 | MS.gene71742 | 0.847087 | 1.44E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene71742 | 0.823646 | 1.24E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene71742 | 0.863563 | 2.28E-64 | -1.69E-46 |
| MS.gene051366 | MS.gene71742 | -0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene051367 | MS.gene71742 | -0.819768 | 9.76E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene71742 | 0.807993 | 3.85E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene71742 | 0.823986 | 1.03E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene71742 | 0.804996 | 1.65E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene71742 | 0.832228 | 1.07E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene71742 | 0.838793 | 2.33E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene71742 | 0.847996 | 8.12E-60 | -1.69E-46 |
| MS.gene052916 | MS.gene71742 | 0.813594 | 2.37E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene71742 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene71742 | 0.816567 | 5.17E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene71742 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene71742 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene71742 | 0.832893 | 7.29E-56 | -1.69E-46 |
| MS.gene054600 | MS.gene71742 | 0.817116 | 3.90E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene71742 | 0.863399 | 2.56E-64 | -1.69E-46 |
| MS.gene054642 | MS.gene71742 | 0.846933 | 1.59E-59 | -1.69E-46 |
| MS.gene05470 | MS.gene71742 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene71742 | 0.869269 | 3.51E-66 | -1.69E-46 |
| MS.gene055204 | MS.gene71742 | -0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene71742 | 0.846781 | 1.75E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene71742 | 0.848741 | 5.05E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene71742 | 0.829266 | 5.67E-55 | -1.69E-46 |
| MS.gene055634 | MS.gene71742 | 0.92007 | 2.04E-87 | -1.69E-46 |
| MS.gene055636 | MS.gene71742 | 0.81692 | 4.31E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene71742 | 0.867435 | 1.37E-65 | -1.69E-46 |
| MS.gene055748 | MS.gene71742 | 0.845209 | 4.68E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene71742 | 0.855373 | 6.59E-62 | -1.69E-46 |
| MS.gene055751 | MS.gene71742 | 0.867004 | 1.88E-65 | -1.69E-46 |
| MS.gene055776 | MS.gene71742 | 0.862489 | 4.89E-64 | -1.69E-46 |
| MS.gene055849 | MS.gene71742 | 0.906199 | 1.91E-80 | -1.69E-46 |
| MS.gene05589 | MS.gene71742 | 0.824475 | 7.91E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene71742 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene71742 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene71742 | 0.86214 | 6.26E-64 | -1.69E-46 |
| MS.gene056510 | MS.gene71742 | 0.856539 | 3.00E-62 | -1.69E-46 |
| MS.gene056549 | MS.gene71742 | 0.864829 | 9.18E-65 | -1.69E-46 |
| MS.gene056618 | MS.gene71742 | -0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene71742 | 0.86569 | 4.92E-65 | -1.69E-46 |
| MS.gene056692 | MS.gene71742 | 0.840136 | 1.04E-57 | -1.69E-46 |
| MS.gene056898 | MS.gene71742 | 0.81834 | 2.06E-52 | -1.69E-46 |
| MS.gene056910 | MS.gene71742 | 0.80237 | 5.79E-49 | -1.69E-46 |
| MS.gene057684 | MS.gene71742 | 0.843841 | 1.09E-58 | -1.69E-46 |
| MS.gene057687 | MS.gene71742 | 0.827968 | 1.17E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene71742 | 0.835601 | 1.53E-56 | -1.69E-46 |
| MS.gene057872 | MS.gene71742 | 0.850964 | 1.21E-60 | -1.69E-46 |
| MS.gene058334 | MS.gene71742 | -0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene058335 | MS.gene71742 | 0.85579 | 4.98E-62 | -1.69E-46 |
| MS.gene058419 | MS.gene71742 | 0.862343 | 5.42E-64 | -1.69E-46 |
| MS.gene058719 | MS.gene71742 | 0.880874 | 3.83E-70 | -1.69E-46 |
| MS.gene058773 | MS.gene71742 | 0.85927 | 4.65E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene71742 | 0.859306 | 4.53E-63 | -1.69E-46 |
| MS.gene059023 | MS.gene71742 | 0.821734 | 3.45E-53 | -1.69E-46 |
| MS.gene059026 | MS.gene71742 | 0.83435 | 3.15E-56 | -1.69E-46 |
| MS.gene059029 | MS.gene71742 | 0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene059079 | MS.gene71742 | 0.887829 | 1.01E-72 | -1.69E-46 |
| MS.gene05912 | MS.gene71742 | 0.860329 | 2.23E-63 | -1.69E-46 |
| MS.gene059677 | MS.gene71742 | 0.87559 | 2.73E-68 | -1.69E-46 |
| MS.gene059718 | MS.gene71742 | 0.822392 | 2.43E-53 | -1.69E-46 |
| MS.gene059756 | MS.gene71742 | 0.811907 | 5.53E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene71742 | 0.823299 | 1.49E-53 | -1.69E-46 |
| MS.gene059837 | MS.gene71742 | 0.80161 | 8.30E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene71742 | 0.86048 | 2.01E-63 | -1.69E-46 |
| MS.gene060526 | MS.gene71742 | 0.831139 | 1.98E-55 | -1.69E-46 |
| MS.gene060595 | MS.gene71742 | -0.828365 | 9.36E-55 | -1.69E-46 |
| MS.gene060703 | MS.gene71742 | 0.892703 | 1.24E-74 | -1.69E-46 |
| MS.gene060762 | MS.gene71742 | 0.865324 | 6.42E-65 | -1.69E-46 |
| MS.gene060778 | MS.gene71742 | 0.803216 | 3.88E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene71742 | 0.846525 | 2.06E-59 | -1.69E-46 |
| MS.gene060823 | MS.gene71742 | -0.835485 | 1.63E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene71742 | 0.852906 | 3.40E-61 | -1.69E-46 |
| MS.gene061134 | MS.gene71742 | 0.815066 | 1.12E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene71742 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene061171 | MS.gene71742 | 0.821652 | 3.60E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71742.t1 | MTR_1g108710 | 98.155 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 0.0 | 543 |
| MS.gene71742.t1 | MTR_1g108710 | 98.008 | 251 | 5 | 0 | 1 | 251 | 24 | 274 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71742.t1 | AT1G15140 | 71.377 | 276 | 72 | 3 | 1 | 271 | 22 | 295 | 1.48e-138 | 392 |
| MS.gene71742.t1 | AT1G15140 | 70.306 | 229 | 61 | 3 | 1 | 224 | 22 | 248 | 9.54e-110 | 318 |
| MS.gene71742.t1 | AT1G15140 | 70.306 | 229 | 61 | 3 | 1 | 224 | 22 | 248 | 9.54e-110 | 318 |
Find 94 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCTCTTCAGGTTTC+TGG | 0.108389 | 1.1:+77682906 | None:intergenic |
| ATCGACCCACCCGAGAAATT+TGG | 0.234673 | 1.1:-77684487 | MS.gene71742:CDS |
| CCTGAAGAGAATGGCTTATC+AGG | 0.258718 | 1.1:-77682899 | MS.gene71742:intron |
| TGTTGAGCTTAGTCCGGTTA+TGG | 0.301742 | 1.1:-77684533 | MS.gene71742:CDS |
| CCTGATAAGCCATTCTCTTC+AGG | 0.302056 | 1.1:+77682899 | None:intergenic |
| TTGCCACTGGATCCGGAATT+AGG | 0.330537 | 1.1:-77684450 | MS.gene71742:intron |
| GTGTGAGACGTGGCAAGGTC+AGG | 0.331915 | 1.1:+77684727 | None:intergenic |
| CTTGTCTTTGCCACTGGATC+CGG | 0.337767 | 1.1:-77684457 | MS.gene71742:CDS |
| GTTGAGCTTAGTCCGGTTAT+GGG | 0.374160 | 1.1:-77684532 | MS.gene71742:CDS |
| CTTAGTCCGGTTATGGGGAA+TGG | 0.384177 | 1.1:-77684526 | MS.gene71742:CDS |
| TTATCCAACCCTTTGTCAAC+TGG | 0.387952 | 1.1:-77682590 | MS.gene71742:CDS |
| ACTGTTCTTGTCTTTGCCAC+TGG | 0.391138 | 1.1:-77684463 | MS.gene71742:CDS |
| TATAGGAGAGATTTAAAGAC+TGG | 0.394111 | 1.1:-77682798 | MS.gene71742:intron |
| ATTCGGTCACTTATTGAGTC+AGG | 0.405073 | 1.1:-77682973 | MS.gene71742:CDS |
| TCAACTGGTGCTGTACTTTG+TGG | 0.414186 | 1.1:-77682575 | MS.gene71742:CDS |
| TTTAAAGACTGGGAATCTTC+CGG | 0.416173 | 1.1:-77682787 | MS.gene71742:CDS |
| CGTTGTGTGGGTTGAAGAAA+GGG | 0.418149 | 1.1:-77684561 | MS.gene71742:CDS |
| GCGTTGTGTGGGTTGAAGAA+AGG | 0.428547 | 1.1:-77684562 | MS.gene71742:CDS |
| GGCAGAAACTGACCTAATTC+CGG | 0.434711 | 1.1:+77684438 | None:intergenic |
| TCGATCTCGGAGAGAGGAGC+TGG | 0.438598 | 1.1:+77684799 | None:intergenic |
| ACATCTATTCTTGTTGCTGA+TGG | 0.438700 | 1.1:-77681507 | MS.gene71742:CDS |
| TCAAACCCATTCCCCATAAC+CGG | 0.441227 | 1.1:+77684520 | None:intergenic |
| CAACTGGTGCTGTACTTTGT+GGG | 0.442180 | 1.1:-77682574 | MS.gene71742:CDS |
| TTGACGTACGGCGGCGGAAA+GGG | 0.449809 | 1.1:+77684840 | None:intergenic |
| GACTCAATAAGTGACCGAAT+TGG | 0.449902 | 1.1:+77682976 | None:intergenic |
| CTTGACGTACGGCGGCGGAA+AGG | 0.459299 | 1.1:+77684839 | None:intergenic |
| TGACGGAGACGGTGGTTGGT+GGG | 0.462815 | 1.1:+77684874 | None:intergenic |
| TCTCCAGTCCAACTATCATC+TGG | 0.464149 | 1.1:+77682736 | None:intergenic |
| GTGACGGAGACGGTGGTTGG+TGG | 0.471139 | 1.1:+77684873 | None:intergenic |
| ATAGCAAGAAACGACGGTTT+CGG | 0.475246 | 1.1:+77684664 | None:intergenic |
| TACGTCAAGACACCACCGTC+TGG | 0.479107 | 1.1:-77684825 | MS.gene71742:CDS |
| TGTGAGACGTGGCAAGGTCA+GGG | 0.483409 | 1.1:+77684728 | None:intergenic |
| TTAGTCCGGTTATGGGGAAT+GGG | 0.485622 | 1.1:-77684525 | MS.gene71742:CDS |
| CGTGGCAAGGTCAGGGGCGT+CGG | 0.495943 | 1.1:+77684735 | None:intergenic |
| GGATGTTGTTGAGCTTAGTC+CGG | 0.502498 | 1.1:-77684539 | MS.gene71742:CDS |
| AAGAACAGTTCCAAATTTCT+CGG | 0.503898 | 1.1:+77684477 | None:intergenic |
| TGTCTCAACCAGATGATAGT+TGG | 0.504609 | 1.1:-77682744 | MS.gene71742:CDS |
| GACGGAGACGGTGGTTGGTG+GGG | 0.509831 | 1.1:+77684875 | None:intergenic |
| TTATTGTGTGCAGTCCAATT+CGG | 0.511671 | 1.1:-77682990 | MS.gene71742:intron |
| TGGAGAAAGTGGCTTTGTAC+AGG | 0.512190 | 1.1:-77682719 | MS.gene71742:intron |
| CAACCAGATGATAGTTGGAC+TGG | 0.517272 | 1.1:-77682739 | MS.gene71742:CDS |
| ATTGAGTCAGGATTTGATGC+TGG | 0.518551 | 1.1:-77682961 | MS.gene71742:CDS |
| AGAACAGTTCCAAATTTCTC+GGG | 0.523438 | 1.1:+77684478 | None:intergenic |
| GGTTTAGATTGAAGCGGCGT+AGG | 0.525093 | 1.1:+77684896 | None:intergenic |
| GACGGTGGTGTCTTGACGTA+CGG | 0.543425 | 1.1:+77684828 | None:intergenic |
| GATAGTTGGACTGGAGAAAG+TGG | 0.543932 | 1.1:-77682730 | MS.gene71742:CDS |
| GGTGTCTTGACGTACGGCGG+CGG | 0.544339 | 1.1:+77684834 | None:intergenic |
| TCCACTGCAGAAGCGTTGTG+TGG | 0.545176 | 1.1:-77684574 | MS.gene71742:CDS |
| TAGATTGAAGCGGCGTAGGA+TGG | 0.550133 | 1.1:+77684900 | None:intergenic |
| AAAGGGTTGCGAGTCGGTGA+CGG | 0.551990 | 1.1:+77684857 | None:intergenic |
| GGCCAGAAACCTGAAGAGAA+TGG | 0.557359 | 1.1:-77682908 | MS.gene71742:CDS |
| TTGCGAGTCGGTGACGGAGA+CGG | 0.557465 | 1.1:+77684863 | None:intergenic |
| AGGGGCGTCGGAAACGTCGA+TGG | 0.558624 | 1.1:+77684747 | None:intergenic |
| ACAGTTCCAAATTTCTCGGG+TGG | 0.560614 | 1.1:+77684481 | None:intergenic |
| GGAATGGGTTTGATATTAGT+CGG | 0.561988 | 1.1:-77684510 | MS.gene71742:CDS |
| CTCAGCGGCAGGTTCGATCT+CGG | 0.562464 | 1.1:+77684786 | None:intergenic |
| CGCGTGTGTGAGACGTGGCA+AGG | 0.563503 | 1.1:+77684722 | None:intergenic |
| TCGGTGACGGAGACGGTGGT+TGG | 0.563811 | 1.1:+77684870 | None:intergenic |
| CTCTTAATCGCAAGCTTCGG+CGG | 0.564323 | 1.1:+77684634 | None:intergenic |
| TGGAAGAGTGACTCAGCGGC+AGG | 0.570715 | 1.1:+77684775 | None:intergenic |
| GTACAGCACCAGTTGACAAA+GGG | 0.571677 | 1.1:+77682582 | None:intergenic |
| GAGAGGAGCTGGAGTCCAGA+CGG | 0.574346 | 1.1:+77684810 | None:intergenic |
| TCATCTGGTTGAGACAATAC+AGG | 0.579533 | 1.1:+77682751 | None:intergenic |
| TTGAGCTTAGTCCGGTTATG+GGG | 0.580245 | 1.1:-77684531 | MS.gene71742:CDS |
| CAGTTCCAAATTTCTCGGGT+GGG | 0.584521 | 1.1:+77684482 | None:intergenic |
| CCACTCTTAATCGCAAGCTT+CGG | 0.586640 | 1.1:+77684631 | None:intergenic |
| GTGAGACGTGGCAAGGTCAG+GGG | 0.594184 | 1.1:+77684729 | None:intergenic |
| CCCACACAACGCTTCTGCAG+TGG | 0.596333 | 1.1:+77684573 | None:intergenic |
| TGGTGGGGTTTAGATTGAAG+CGG | 0.600108 | 1.1:+77684890 | None:intergenic |
| GAAGCGGCGTAGGATGGACA+TGG | 0.600277 | 1.1:+77684906 | None:intergenic |
| AGCACCAGTTGACAAAGGGT+TGG | 0.602600 | 1.1:+77682586 | None:intergenic |
| AGTACAGCACCAGTTGACAA+AGG | 0.607829 | 1.1:+77682581 | None:intergenic |
| GCAGGTTCGATCTCGGAGAG+AGG | 0.610044 | 1.1:+77684793 | None:intergenic |
| CCGAAGCTTGCGATTAAGAG+TGG | 0.610290 | 1.1:-77684631 | MS.gene71742:CDS |
| CCACTGCAGAAGCGTTGTGT+GGG | 0.619285 | 1.1:-77684573 | MS.gene71742:CDS |
| AGGAGCTGGAGTCCAGACGG+TGG | 0.619490 | 1.1:+77684813 | None:intergenic |
| CAGTATCTTCAGCTTAAAGT+CGG | 0.619863 | 1.1:-77684694 | MS.gene71742:CDS |
| GCCACGTCTCACACACGCGC+CGG | 0.620260 | 1.1:-77684718 | MS.gene71742:CDS |
| CGGCGGAAAGGGTTGCGAGT+CGG | 0.621174 | 1.1:+77684851 | None:intergenic |
| CAGGATTTGATGCTGGCAAG+AGG | 0.625026 | 1.1:-77682954 | MS.gene71742:CDS |
| TGACCTAATTCCGGATCCAG+TGG | 0.627958 | 1.1:+77684447 | None:intergenic |
| ATAGGAGAGATTTAAAGACT+GGG | 0.643444 | 1.1:-77682797 | MS.gene71742:intron |
| TTTAAGCTGAAGATACTGAC+CGG | 0.649623 | 1.1:+77684699 | None:intergenic |
| CGGAAACGTCGATGGAAACG+TGG | 0.650313 | 1.1:+77684755 | None:intergenic |
| GGCTGCATATACGAGAGCAA+AGG | 0.651480 | 1.1:-77682615 | MS.gene71742:CDS |
| TACAGGTACAATCTTGACAC+CGG | 0.656089 | 1.1:+77682768 | None:intergenic |
| CGAGTCGGTGACGGAGACGG+TGG | 0.672480 | 1.1:+77684866 | None:intergenic |
| GTTGTGTGGGTTGAAGAAAG+GGG | 0.680851 | 1.1:-77684560 | MS.gene71742:CDS |
| AAGCGGCGTAGGATGGACAT+GGG | 0.692247 | 1.1:+77684907 | None:intergenic |
| ACCGGCGCGTGTGTGAGACG+TGG | 0.704486 | 1.1:+77684717 | None:intergenic |
| GGTGGTGTCTTGACGTACGG+CGG | 0.712276 | 1.1:+77684831 | None:intergenic |
| AACGTGGAAGAGTGACTCAG+CGG | 0.719906 | 1.1:+77684771 | None:intergenic |
| GAAGCGATAGCAAGAAACGA+CGG | 0.765356 | 1.1:+77684658 | None:intergenic |
| TGGGCAGAAACAGATGACTG+AGG | 0.793337 | 1.1:-77682555 | MS.gene71742:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTAAAACAATCAAA+AGG | - | chr1.1:77684089-77684108 | MS.gene71742:intron | 10.0% |
| !! | AAAAGAATTGTATACTTAAT+AGG | + | chr1.1:77682855-77682874 | None:intergenic | 15.0% |
| !! | AAAGAATTGTATACTTAATA+GGG | + | chr1.1:77682854-77682873 | None:intergenic | 15.0% |
| !! | AACTACATTATTCAAAAATA+GGG | - | chr1.1:77684251-77684270 | MS.gene71742:intron | 15.0% |
| !! | ATAATAACATTGATATTGAA+AGG | + | chr1.1:77684839-77684858 | None:intergenic | 15.0% |
| !! | ATATATCAATAAAAGAACAA+AGG | + | chr1.1:77684658-77684677 | None:intergenic | 15.0% |
| !!! | ACAATTTTCTTTTATGTTAT+AGG | - | chr1.1:77683562-77683581 | MS.gene71742:intron | 15.0% |
| !!! | TTATTTTCCAAAATTTGATT+TGG | - | chr1.1:77681998-77682017 | MS.gene71742:intron | 15.0% |
| !! | AACATCGAATCAATATATTT+AGG | - | chr1.1:77682600-77682619 | MS.gene71742:CDS | 20.0% |
| !! | AATATCAATGTTATTATTGC+AGG | - | chr1.1:77684842-77684861 | MS.gene71742:CDS | 20.0% |
| !! | ACAATATTATCCTTAGAAAA+AGG | + | chr1.1:77683121-77683140 | None:intergenic | 20.0% |
| !! | ACATCGAATCAATATATTTA+GGG | - | chr1.1:77682601-77682620 | MS.gene71742:CDS | 20.0% |
| !! | CAAAAATATCTATATTCGAA+AGG | + | chr1.1:77682988-77683007 | None:intergenic | 20.0% |
| !! | CAACTACATTATTCAAAAAT+AGG | - | chr1.1:77684250-77684269 | MS.gene71742:intron | 20.0% |
| !! | TTAATACTGACAATTATACA+AGG | + | chr1.1:77682126-77682145 | None:intergenic | 20.0% |
| !! | TTGTATAATTGTCAGTATTA+AGG | - | chr1.1:77682125-77682144 | MS.gene71742:intron | 20.0% |
| !!! | ATTCTTTTTCACTTATATCA+TGG | - | chr1.1:77682867-77682886 | MS.gene71742:intron | 20.0% |
| !!! | CTTTCGAATATAGATATTTT+TGG | - | chr1.1:77682986-77683005 | MS.gene71742:intron | 20.0% |
| ! | AAACGATGAATTCAAAGAAA+AGG | + | chr1.1:77683149-77683168 | None:intergenic | 25.0% |
| ! | AATGTGAAAAACACTTTGAA+TGG | - | chr1.1:77683232-77683251 | MS.gene71742:intron | 25.0% |
| ! | ACTAAGAAGCTATTAACAAT+TGG | - | chr1.1:77682407-77682426 | MS.gene71742:intron | 25.0% |
| ! | AGAATATCATGACAAATATC+AGG | - | chr1.1:77684583-77684602 | MS.gene71742:CDS | 25.0% |
| ! | AGAGAGTAAAGAGAAAATAT+TGG | + | chr1.1:77683341-77683360 | None:intergenic | 25.0% |
| ! | AGGAAAATGATGATCAATAA+TGG | + | chr1.1:77682719-77682738 | None:intergenic | 25.0% |
| ! | AGTACAGAGTTATTGTAAAA+AGG | + | chr1.1:77683524-77683543 | None:intergenic | 25.0% |
| ! | ATAATGTCTTGGATTTGTAA+AGG | + | chr1.1:77684341-77684360 | None:intergenic | 25.0% |
| ! | GAAAGATGATAGCAATAATA+AGG | + | chr1.1:77683850-77683869 | None:intergenic | 25.0% |
| ! | GGAAAATGATGATCAATAAT+GGG | + | chr1.1:77682718-77682737 | None:intergenic | 25.0% |
| ! | TCTTTACTCTCTTTGATATT+GGG | - | chr1.1:77683349-77683368 | MS.gene71742:intron | 25.0% |
| ! | TGTTGCAGATATTAAGATTA+TGG | - | chr1.1:77682295-77682314 | MS.gene71742:intron | 25.0% |
| ! | TTGTTATGATCTAGTAAAGT+AGG | - | chr1.1:77682208-77682227 | MS.gene71742:intron | 25.0% |
| !! | ATCAACACCAAATCAAATTT+TGG | + | chr1.1:77682008-77682027 | None:intergenic | 25.0% |
| !! | ATTCTTTGTTCCTTTTTCTA+AGG | - | chr1.1:77683108-77683127 | MS.gene71742:intron | 25.0% |
| !!! | ATTTTAGCCATTTCCTAATT+AGG | - | chr1.1:77684019-77684038 | MS.gene71742:intron | 25.0% |
| AAACAATCTTTACCACTTGA+AGG | + | chr1.1:77683721-77683740 | None:intergenic | 30.0% | |
| AAGAACAGTTCCAAATTTCT+CGG | + | chr1.1:77681903-77681922 | None:intergenic | 30.0% | |
| AAGAATCACCAAAACTAACA+AGG | - | chr1.1:77684309-77684328 | MS.gene71742:intron | 30.0% | |
| AAGTAGTGATTTACATGCAA+AGG | + | chr1.1:77683285-77683304 | None:intergenic | 30.0% | |
| AATAATGTAGTTGCAGTTGT+TGG | + | chr1.1:77684243-77684262 | None:intergenic | 30.0% | |
| ACACTTTATAGCACTTACAT+TGG | + | chr1.1:77683012-77683031 | None:intergenic | 30.0% | |
| ACAGGACACAAAATTTCTAA+AGG | + | chr1.1:77682236-77682255 | None:intergenic | 30.0% | |
| ATAGGAGAGATTTAAAGACT+GGG | - | chr1.1:77683580-77683599 | MS.gene71742:intron | 30.0% | |
| ATTATTCAAAAATAGGGTCC+TGG | - | chr1.1:77684257-77684276 | MS.gene71742:intron | 30.0% | |
| CACATTCAAAATCATACTCA+AGG | + | chr1.1:77683218-77683237 | None:intergenic | 30.0% | |
| CAGGACACAAAATTTCTAAA+GGG | + | chr1.1:77682235-77682254 | None:intergenic | 30.0% | |
| CTCTTTACTCTCTTTGATAT+TGG | - | chr1.1:77683348-77683367 | MS.gene71742:intron | 30.0% | |
| GCTTGGATTTGTACATAAAT+AGG | + | chr1.1:77682739-77682758 | None:intergenic | 30.0% | |
| GTAATGAAGTAATGCTACAT+TGG | + | chr1.1:77682915-77682934 | None:intergenic | 30.0% | |
| GTACAATCCATATCATTCTA+AGG | + | chr1.1:77682546-77682565 | None:intergenic | 30.0% | |
| GTTCGACACATAAATTGTTT+CGG | - | chr1.1:77683191-77683210 | MS.gene71742:intron | 30.0% | |
| GTTTGATCCTTAGAATGATA+TGG | - | chr1.1:77682536-77682555 | MS.gene71742:intron | 30.0% | |
| TATAGGAGAGATTTAAAGAC+TGG | - | chr1.1:77683579-77683598 | MS.gene71742:intron | 30.0% | |
| TATCATGACAAATATCAGGA+AGG | - | chr1.1:77684587-77684606 | MS.gene71742:CDS | 30.0% | |
| TCTTTCTTTCACTCTATGAT+AGG | + | chr1.1:77683923-77683942 | None:intergenic | 30.0% | |
| TGTAGCATTACTTCATTACT+CGG | - | chr1.1:77682916-77682935 | MS.gene71742:CDS | 30.0% | |
| TGTATACTTAATAGGGAACT+TGG | + | chr1.1:77682847-77682866 | None:intergenic | 30.0% | |
| TTGGAAGAAGAAAGAAAAAG+AGG | + | chr1.1:77684224-77684243 | None:intergenic | 30.0% | |
| ! | AAAATGCATGTCTCTTTTCT+TGG | - | chr1.1:77684163-77684182 | MS.gene71742:intron | 30.0% |
| ! | AACATTTTCAACCCAAATTG+AGG | + | chr1.1:77681963-77681982 | None:intergenic | 30.0% |
| ! | AGGACACAAAATTTCTAAAG+GGG | + | chr1.1:77682234-77682253 | None:intergenic | 30.0% |
| ! | CTGATGTGAGACTATTTTAT+GGG | - | chr1.1:77683447-77683466 | MS.gene71742:intron | 30.0% |
| ! | TATTTGAAGCCTACCTAATT+AGG | + | chr1.1:77684035-77684054 | None:intergenic | 30.0% |
| ! | TCTGATGTGAGACTATTTTA+TGG | - | chr1.1:77683446-77683465 | MS.gene71742:intron | 30.0% |
| ! | TGACAACAATGTCATCATTT+TGG | + | chr1.1:77684380-77684399 | None:intergenic | 30.0% |
| ! | TGATGTGAGACTATTTTATG+GGG | - | chr1.1:77683448-77683467 | MS.gene71742:intron | 30.0% |
| !! | ATGATGGATCAATAATGTCT+TGG | + | chr1.1:77684352-77684371 | None:intergenic | 30.0% |
| !! | CAATTTGGGTTGAAAATGTT+AGG | - | chr1.1:77681963-77681982 | MS.gene71742:intron | 30.0% |
| !! | CGACAGTAATGATTGTTTTT+AGG | - | chr1.1:77683943-77683962 | MS.gene71742:intron | 30.0% |
| !! | GGATAAAACCTTGTTAGTTT+TGG | + | chr1.1:77684320-77684339 | None:intergenic | 30.0% |
| AAGCCTACCTAATTAGGAAA+TGG | + | chr1.1:77684029-77684048 | None:intergenic | 35.0% | |
| ACATCTATTCTTGTTGCTGA+TGG | - | chr1.1:77684870-77684889 | MS.gene71742:CDS | 35.0% | |
| ACTCTTGCACTTACTTTCTT+TGG | + | chr1.1:77682518-77682537 | None:intergenic | 35.0% | |
| AGAACAGTTCCAAATTTCTC+GGG | + | chr1.1:77681902-77681921 | None:intergenic | 35.0% | |
| AGCGTCAATAAGTTTCAACT+AGG | - | chr1.1:77684775-77684794 | MS.gene71742:CDS | 35.0% | |
| ATAGACATGATTACCTTTGC+AGG | - | chr1.1:77683741-77683760 | MS.gene71742:intron | 35.0% | |
| ATCGTAAAATCAAGGAAGCT+TGG | + | chr1.1:77682756-77682775 | None:intergenic | 35.0% | |
| ATGACACATTCACAACCTAA+AGG | + | chr1.1:77682438-77682457 | None:intergenic | 35.0% | |
| ATGATGACATTGTTGTCACT+CGG | - | chr1.1:77684382-77684401 | MS.gene71742:intron | 35.0% | |
| ATGGAACATCCTTTCCAAAA+CGG | + | chr1.1:77684433-77684452 | None:intergenic | 35.0% | |
| CAGTATCTTCAGCTTAAAGT+CGG | - | chr1.1:77681683-77681702 | MS.gene71742:intron | 35.0% | |
| GAATTCATCGTTTCTACTGA+TGG | - | chr1.1:77683156-77683175 | MS.gene71742:intron | 35.0% | |
| GGCTATTCATCGTAAAATCA+AGG | + | chr1.1:77682764-77682783 | None:intergenic | 35.0% | |
| TAGCCATTTCCTAATTAGGT+AGG | - | chr1.1:77684023-77684042 | MS.gene71742:intron | 35.0% | |
| TGGATTGTACTGAATGTACT+CGG | - | chr1.1:77682556-77682575 | MS.gene71742:CDS | 35.0% | |
| TGTCATGATATTCTCCCAAT+TGG | + | chr1.1:77684577-77684596 | None:intergenic | 35.0% | |
| TTACGATTCAAAATCGCTTG+TGG | + | chr1.1:77682820-77682839 | None:intergenic | 35.0% | |
| TTAGTGATTCATTGGCACTA+TGG | - | chr1.1:77682255-77682274 | MS.gene71742:intron | 35.0% | |
| TTATTGTGTGCAGTCCAATT+CGG | - | chr1.1:77683387-77683406 | MS.gene71742:intron | 35.0% | |
| TTTAAAGACTGGGAATCTTC+CGG | - | chr1.1:77683590-77683609 | MS.gene71742:intron | 35.0% | |
| TTTAAGCTGAAGATACTGAC+CGG | + | chr1.1:77681681-77681700 | None:intergenic | 35.0% | |
| TTTGCTTAACTACCTTCAAG+TGG | - | chr1.1:77683706-77683725 | MS.gene71742:intron | 35.0% | |
| ! | AGGTAAAGTGTGTGGAATTT+TGG | - | chr1.1:77683678-77683697 | MS.gene71742:intron | 35.0% |
| ! | ATTATTAGTGCCACTCTGTT+CGG | - | chr1.1:77682357-77682376 | MS.gene71742:intron | 35.0% |
| ! | CATCATTTTGGACAGTATGA+TGG | + | chr1.1:77684368-77684387 | None:intergenic | 35.0% |
| ! | GGAATGGGTTTGATATTAGT+CGG | - | chr1.1:77681867-77681886 | MS.gene71742:intron | 35.0% |
| ! | TTAGGTTGTGAATGTGTCAT+TGG | - | chr1.1:77682438-77682457 | MS.gene71742:intron | 35.0% |
| !! | AGTTTTGGTGATTCTTCTAC+CGG | + | chr1.1:77684305-77684324 | None:intergenic | 35.0% |
| !! | CTTTGCAATTTTAATCACCG+CGG | + | chr1.1:77684061-77684080 | None:intergenic | 35.0% |
| !!! | TTTTGGTGAAGAGTGTTGTT+GGG | - | chr1.1:77681780-77681799 | MS.gene71742:intron | 35.0% |
| !!! | TTTTTGGTGAAGAGTGTTGT+TGG | - | chr1.1:77681779-77681798 | MS.gene71742:intron | 35.0% |
| AAGCTAAGCACAAGTCCATA+GGG | - | chr1.1:77682661-77682680 | MS.gene71742:intron | 40.0% | |
| AAGTATGAGAGGGTTCCAAT+TGG | - | chr1.1:77684559-77684578 | MS.gene71742:CDS | 40.0% | |
| ACAAAAAACTCCGAACAGAG+TGG | + | chr1.1:77682370-77682389 | None:intergenic | 40.0% | |
| AGTATGAGAGGGTTCCAATT+GGG | - | chr1.1:77684560-77684579 | MS.gene71742:CDS | 40.0% | |
| AGTGCCAATGAATCACTAAC+AGG | + | chr1.1:77682254-77682273 | None:intergenic | 40.0% | |
| ATAGCAAGAAACGACGGTTT+CGG | + | chr1.1:77681716-77681735 | None:intergenic | 40.0% | |
| ATCACTCTACAAGTCTACCA+AGG | + | chr1.1:77683068-77683087 | None:intergenic | 40.0% | |
| ATCATCATTGAAGGAGCTAG+AGG | - | chr1.1:77684469-77684488 | MS.gene71742:CDS | 40.0% | |
| ATTCGGTCACTTATTGAGTC+AGG | - | chr1.1:77683404-77683423 | MS.gene71742:intron | 40.0% | |
| ATTGAGTCAGGATTTGATGC+TGG | - | chr1.1:77683416-77683435 | MS.gene71742:intron | 40.0% | |
| ATTGTACTGAATGTACTCGG+AGG | - | chr1.1:77682559-77682578 | MS.gene71742:CDS | 40.0% | |
| CGCTTGTGGCATAACATAAT+TGG | + | chr1.1:77682806-77682825 | None:intergenic | 40.0% | |
| CTCACTTACTACTTGTACAC+CGG | - | chr1.1:77684283-77684302 | MS.gene71742:intron | 40.0% | |
| CTTTGTACAGGTAAAGTGTG+TGG | - | chr1.1:77683670-77683689 | MS.gene71742:intron | 40.0% | |
| GAACCCTCTCATACTTTATG+CGG | + | chr1.1:77684555-77684574 | None:intergenic | 40.0% | |
| GACTCAATAAGTGACCGAAT+TGG | + | chr1.1:77683404-77683423 | None:intergenic | 40.0% | |
| GTCAGTTTCTGCCTCAATTT+GGG | - | chr1.1:77681949-77681968 | MS.gene71742:intron | 40.0% | |
| GTGTCCTGTTAGTGATTCAT+TGG | - | chr1.1:77682247-77682266 | MS.gene71742:intron | 40.0% | |
| GTTTCTGTTGCAACTCTATC+TGG | - | chr1.1:77683259-77683278 | MS.gene71742:intron | 40.0% | |
| TAACAATTGGCGTTGCCTTT+AGG | - | chr1.1:77682420-77682439 | MS.gene71742:intron | 40.0% | |
| TACAGGTACAATCTTGACAC+CGG | + | chr1.1:77683612-77683631 | None:intergenic | 40.0% | |
| TCACTAAACAAGAACGACAG+TGG | + | chr1.1:77683890-77683909 | None:intergenic | 40.0% | |
| TCATCTGGTTGAGACAATAC+AGG | + | chr1.1:77683629-77683648 | None:intergenic | 40.0% | |
| TGATGACATTGTTGTCACTC+GGG | - | chr1.1:77684383-77684402 | MS.gene71742:intron | 40.0% | |
| TGGCATAACATAATTGGTCG+AGG | + | chr1.1:77682800-77682819 | None:intergenic | 40.0% | |
| TGGTAGACTTGTAGAGTGAT+TGG | - | chr1.1:77683068-77683087 | MS.gene71742:intron | 40.0% | |
| TGTCTCAACCAGATGATAGT+TGG | - | chr1.1:77683633-77683652 | MS.gene71742:intron | 40.0% | |
| TTATCCAACCCTTTGTCAAC+TGG | - | chr1.1:77683787-77683806 | MS.gene71742:intron | 40.0% | |
| TTTAGGAAACCGAACCTACT+AGG | - | chr1.1:77683960-77683979 | MS.gene71742:intron | 40.0% | |
| ! | GCTATAAAGTGTTTCAGCCA+TGG | - | chr1.1:77683020-77683039 | MS.gene71742:intron | 40.0% |
| !! | GAGTGGTGTGTTTGAGTTTT+TGG | - | chr1.1:77681763-77681782 | MS.gene71742:intron | 40.0% |
| !! | TATGAGGGCATCATCATTGA+AGG | - | chr1.1:77684460-77684479 | MS.gene71742:CDS | 40.0% |
| !!! | GTTTTGGAAAGGATGTTCCA+TGG | - | chr1.1:77684432-77684451 | MS.gene71742:intron | 40.0% |
| AACACCAGTTGACACAAACC+AGG | + | chr1.1:77684745-77684764 | None:intergenic | 45.0% | |
| ACAGTTCCAAATTTCTCGGG+TGG | + | chr1.1:77681899-77681918 | None:intergenic | 45.0% | |
| ACCACCGCATAAAGTATGAG+AGG | - | chr1.1:77684548-77684567 | MS.gene71742:CDS | 45.0% | |
| ACCTAACTGATAGACAGTCG+AGG | - | chr1.1:77682467-77682486 | MS.gene71742:intron | 45.0% | |
| ACTGTTCTTGTCTTTGCCAC+TGG | - | chr1.1:77681914-77681933 | MS.gene71742:intron | 45.0% | |
| AGAGCTAGTCCTAGTAGGTT+CGG | + | chr1.1:77683972-77683991 | None:intergenic | 45.0% | |
| AGTACAGCACCAGTTGACAA+AGG | + | chr1.1:77683799-77683818 | None:intergenic | 45.0% | |
| ATTCCAGAGCTAGTCCTAGT+AGG | + | chr1.1:77683977-77683996 | None:intergenic | 45.0% | |
| CAACCAGATGATAGTTGGAC+TGG | - | chr1.1:77683638-77683657 | MS.gene71742:intron | 45.0% | |
| CAGTTCCAAATTTCTCGGGT+GGG | + | chr1.1:77681898-77681917 | None:intergenic | 45.0% | |
| CATCTCTCAATACAGTGTCC+TGG | - | chr1.1:77684724-77684743 | MS.gene71742:CDS | 45.0% | |
| CCACCGCATAAAGTATGAGA+GGG | - | chr1.1:77684549-77684568 | MS.gene71742:CDS | 45.0% | |
| CCACTCTTAATCGCAAGCTT+CGG | + | chr1.1:77681749-77681768 | None:intergenic | 45.0% | |
| CCTAACTGATAGACAGTCGA+GGG | - | chr1.1:77682468-77682487 | MS.gene71742:intron | 45.0% | |
| CCTGAAGAGAATGGCTTATC+AGG | - | chr1.1:77683478-77683497 | MS.gene71742:intron | 45.0% | |
| CCTGATAAGCCATTCTCTTC+AGG | + | chr1.1:77683481-77683500 | None:intergenic | 45.0% | |
| CTAACTGATAGACAGTCGAG+GGG | - | chr1.1:77682469-77682488 | MS.gene71742:intron | 45.0% | |
| CTCTACAAGTCTACCAAGGA+AGG | + | chr1.1:77683064-77683083 | None:intergenic | 45.0% | |
| GAAAAGTCTCCTTCTCCCTA+TGG | + | chr1.1:77682679-77682698 | None:intergenic | 45.0% | |
| GAAGCGATAGCAAGAAACGA+CGG | + | chr1.1:77681722-77681741 | None:intergenic | 45.0% | |
| GAAGCTAAGCACAAGTCCAT+AGG | - | chr1.1:77682660-77682679 | MS.gene71742:intron | 45.0% | |
| GGATGTTGTTGAGCTTAGTC+CGG | - | chr1.1:77681838-77681857 | MS.gene71742:intron | 45.0% | |
| GGCAGAAACTGACCTAATTC+CGG | + | chr1.1:77681942-77681961 | None:intergenic | 45.0% | |
| GGTCAGTTTCTGCCTCAATT+TGG | - | chr1.1:77681948-77681967 | MS.gene71742:intron | 45.0% | |
| GTACAGCACCAGTTGACAAA+GGG | + | chr1.1:77683798-77683817 | None:intergenic | 45.0% | |
| GTTGAGCTTAGTCCGGTTAT+GGG | - | chr1.1:77681845-77681864 | MS.gene71742:intron | 45.0% | |
| TCAAACCCATTCCCCATAAC+CGG | + | chr1.1:77681860-77681879 | None:intergenic | 45.0% | |
| TCATTGAAGGAGCTAGAGGA+TGG | - | chr1.1:77684473-77684492 | MS.gene71742:CDS | 45.0% | |
| TCTCCAGTCCAACTATCATC+TGG | + | chr1.1:77683644-77683663 | None:intergenic | 45.0% | |
| TGAGAGATGAAGCAGCTAAC+TGG | + | chr1.1:77684713-77684732 | None:intergenic | 45.0% | |
| TGGTGGGGTTTAGATTGAAG+CGG | + | chr1.1:77681490-77681509 | None:intergenic | 45.0% | |
| TGTTGAGCTTAGTCCGGTTA+TGG | - | chr1.1:77681844-77681863 | MS.gene71742:intron | 45.0% | |
| TTAGTCCGGTTATGGGGAAT+GGG | - | chr1.1:77681852-77681871 | MS.gene71742:intron | 45.0% | |
| TTGAGCTTAGTCCGGTTATG+GGG | - | chr1.1:77681846-77681865 | MS.gene71742:intron | 45.0% | |
| TTGGAAAGGATGTTCCATGG+AGG | - | chr1.1:77684435-77684454 | MS.gene71742:intron | 45.0% | |
| TTTCAGCCATGGCTGTAAGA+GGG | - | chr1.1:77683031-77683050 | MS.gene71742:intron | 45.0% | |
| ! | AGCCATTCTCTTCAGGTTTC+TGG | + | chr1.1:77683474-77683493 | None:intergenic | 45.0% |
| ! | ATGTTCCATGGAGGAGTATG+AGG | - | chr1.1:77684444-77684463 | MS.gene71742:intron | 45.0% |
| ! | CGTTGTGTGGGTTGAAGAAA+GGG | - | chr1.1:77681816-77681835 | MS.gene71742:intron | 45.0% |
| ! | GAAGCAGCTAACTGGTTCAT+GGG | + | chr1.1:77684705-77684724 | None:intergenic | 45.0% |
| ! | GATAGTTGGACTGGAGAAAG+TGG | - | chr1.1:77683647-77683666 | MS.gene71742:intron | 45.0% |
| ! | GGTTGTGAATGTGTCATTGG+TGG | - | chr1.1:77682441-77682460 | MS.gene71742:intron | 45.0% |
| ! | GTTGTGTGGGTTGAAGAAAG+GGG | - | chr1.1:77681817-77681836 | MS.gene71742:intron | 45.0% |
| ! | TGAAGCAGCTAACTGGTTCA+TGG | + | chr1.1:77684706-77684725 | None:intergenic | 45.0% |
| ! | TGTTCCATGGAGGAGTATGA+GGG | - | chr1.1:77684445-77684464 | MS.gene71742:intron | 45.0% |
| !! | CAACTGGTGCTGTACTTTGT+GGG | - | chr1.1:77683803-77683822 | MS.gene71742:intron | 45.0% |
| !! | TCAACTGGTGCTGTACTTTG+TGG | - | chr1.1:77683802-77683821 | MS.gene71742:intron | 45.0% |
| !! | TGGAGAAAGTGGCTTTGTAC+AGG | - | chr1.1:77683658-77683677 | MS.gene71742:intron | 45.0% |
| !! | AATAATACATATATATATAT+AGG | + | chr1.1:77682343-77682362 | None:intergenic | 5.0% |
| AACGTGGAAGAGTGACTCAG+CGG | + | chr1.1:77681609-77681628 | None:intergenic | 50.0% | |
| AACTTGCCCTCTTACAGCCA+TGG | + | chr1.1:77683040-77683059 | None:intergenic | 50.0% | |
| AGAGGGCAAGTTACCTTCCT+TGG | - | chr1.1:77683048-77683067 | MS.gene71742:intron | 50.0% | |
| AGCACAAGTCCATAGGGAGA+AGG | - | chr1.1:77682667-77682686 | MS.gene71742:intron | 50.0% | |
| AGCACCAGTTGACAAAGGGT+TGG | + | chr1.1:77683794-77683813 | None:intergenic | 50.0% | |
| ATAGACAGTCGAGGGGAACT+AGG | - | chr1.1:77682476-77682495 | MS.gene71742:intron | 50.0% | |
| ATCGACCCACCCGAGAAATT+TGG | - | chr1.1:77681890-77681909 | MS.gene71742:intron | 50.0% | |
| CAAGTAGTAAGTGAGCGACC+AGG | + | chr1.1:77684278-77684297 | None:intergenic | 50.0% | |
| CAGGATTTGATGCTGGCAAG+AGG | - | chr1.1:77683423-77683442 | MS.gene71742:intron | 50.0% | |
| CCCTCGACTGTCTATCAGTT+AGG | + | chr1.1:77682471-77682490 | None:intergenic | 50.0% | |
| CCCTCTCATACTTTATGCGG+TGG | + | chr1.1:77684552-77684571 | None:intergenic | 50.0% | |
| CCGAAGCTTGCGATTAAGAG+TGG | - | chr1.1:77681746-77681765 | MS.gene71742:intron | 50.0% | |
| CTCGCTAGTCCAATTAGACC+AGG | + | chr1.1:77684409-77684428 | None:intergenic | 50.0% | |
| CTCGTATATGCAGCCTGCAA+AGG | + | chr1.1:77683757-77683776 | None:intergenic | 50.0% | |
| CTCTTAATCGCAAGCTTCGG+CGG | + | chr1.1:77681746-77681765 | None:intergenic | 50.0% | |
| CTTAGTCCGGTTATGGGGAA+TGG | - | chr1.1:77681851-77681870 | MS.gene71742:intron | 50.0% | |
| CTTGTCTTTGCCACTGGATC+CGG | - | chr1.1:77681920-77681939 | MS.gene71742:intron | 50.0% | |
| GGCCAGAAACCTGAAGAGAA+TGG | - | chr1.1:77683469-77683488 | MS.gene71742:intron | 50.0% | |
| GGCTGCATATACGAGAGCAA+AGG | - | chr1.1:77683762-77683781 | MS.gene71742:intron | 50.0% | |
| GGTCGAGGCAAATTGACATG+TGG | + | chr1.1:77682785-77682804 | None:intergenic | 50.0% | |
| GGTTTAGATTGAAGCGGCGT+AGG | + | chr1.1:77681484-77681503 | None:intergenic | 50.0% | |
| GTAGGCTTCAAATAGAGCCG+CGG | - | chr1.1:77684041-77684060 | MS.gene71742:intron | 50.0% | |
| GTTTCAGCCATGGCTGTAAG+AGG | - | chr1.1:77683030-77683049 | MS.gene71742:intron | 50.0% | |
| TAGATTGAAGCGGCGTAGGA+TGG | + | chr1.1:77681480-77681499 | None:intergenic | 50.0% | |
| TGACCTAATTCCGGATCCAG+TGG | + | chr1.1:77681933-77681952 | None:intergenic | 50.0% | |
| TGGGCAGAAACAGATGACTG+AGG | - | chr1.1:77683822-77683841 | MS.gene71742:intron | 50.0% | |
| TTGCCACTGGATCCGGAATT+AGG | - | chr1.1:77681927-77681946 | MS.gene71742:intron | 50.0% | |
| ! | GCGTTGTGTGGGTTGAAGAA+AGG | - | chr1.1:77681815-77681834 | MS.gene71742:intron | 50.0% |
| ! | GTGTCCTGGTTTGTGTCAAC+TGG | - | chr1.1:77684738-77684757 | MS.gene71742:CDS | 50.0% |
| ! | TGCCAGTTAAGCTGGCTCTT+GGG | - | chr1.1:77684498-77684517 | MS.gene71742:CDS | 50.0% |
| ! | TTGCCAGTTAAGCTGGCTCT+TGG | - | chr1.1:77684497-77684516 | MS.gene71742:CDS | 50.0% |
| !! | CTGGTCTAATTGGACTAGCG+AGG | - | chr1.1:77684407-77684426 | MS.gene71742:intron | 50.0% |
| !! | GAACCTACTAGGACTAGCTC+TGG | - | chr1.1:77683971-77683990 | MS.gene71742:intron | 50.0% |
| !! | GGATGGATTGCCAGTTAAGC+TGG | - | chr1.1:77684490-77684509 | MS.gene71742:CDS | 50.0% |
| AAAGGGTTGCGAGTCGGTGA+CGG | + | chr1.1:77681523-77681542 | None:intergenic | 55.0% | |
| ACATTGTTGTCACTCGGGCC+TGG | - | chr1.1:77684388-77684407 | MS.gene71742:intron | 55.0% | |
| CGGAAACGTCGATGGAAACG+TGG | + | chr1.1:77681625-77681644 | None:intergenic | 55.0% | |
| GACGGTGGTGTCTTGACGTA+CGG | + | chr1.1:77681552-77681571 | None:intergenic | 55.0% | |
| GATGCCCTCATACTCCTCCA+TGG | + | chr1.1:77684452-77684471 | None:intergenic | 55.0% | |
| TACGTCAAGACACCACCGTC+TGG | - | chr1.1:77681552-77681571 | MS.gene71742:intron | 55.0% | |
| TCACTCGGGCCTGGTCTAAT+TGG | - | chr1.1:77684397-77684416 | MS.gene71742:intron | 55.0% | |
| TGTGAGACGTGGCAAGGTCA+GGG | + | chr1.1:77681652-77681671 | None:intergenic | 55.0% | |
| ! | CCAGTTAAGCTGGCTCTTGG+GGG | - | chr1.1:77684500-77684519 | MS.gene71742:CDS | 55.0% |
| ! | GCCAGTTAAGCTGGCTCTTG+GGG | - | chr1.1:77684499-77684518 | MS.gene71742:CDS | 55.0% |
| !! | CCACTGCAGAAGCGTTGTGT+GGG | - | chr1.1:77681804-77681823 | MS.gene71742:intron | 55.0% |
| !! | TCCACTGCAGAAGCGTTGTG+TGG | - | chr1.1:77681803-77681822 | MS.gene71742:intron | 55.0% |
| !!! | CTAGCGAGGCCGTTTTGGAA+AGG | - | chr1.1:77684421-77684440 | MS.gene71742:intron | 55.0% |
| !!! | TTGGACTAGCGAGGCCGTTT+TGG | - | chr1.1:77684416-77684435 | MS.gene71742:intron | 55.0% |
| CCCACACAACGCTTCTGCAG+TGG | + | chr1.1:77681807-77681826 | None:intergenic | 60.0% | |
| CCCCCAAGAGCCAGCTTAAC+TGG | + | chr1.1:77684503-77684522 | None:intergenic | 60.0% | |
| CTCAGCGGCAGGTTCGATCT+CGG | + | chr1.1:77681594-77681613 | None:intergenic | 60.0% | |
| GAGAGGAGCTGGAGTCCAGA+CGG | + | chr1.1:77681570-77681589 | None:intergenic | 60.0% | |
| GCAGGTTCGATCTCGGAGAG+AGG | + | chr1.1:77681587-77681606 | None:intergenic | 60.0% | |
| GGGGGCAGTGGGACAGAAAA+CGG | - | chr1.1:77684518-77684537 | MS.gene71742:CDS | 60.0% | |
| GGTGGTGTCTTGACGTACGG+CGG | + | chr1.1:77681549-77681568 | None:intergenic | 60.0% | |
| GTGAGACGTGGCAAGGTCAG+GGG | + | chr1.1:77681651-77681670 | None:intergenic | 60.0% | |
| GTGTGAGACGTGGCAAGGTC+AGG | + | chr1.1:77681653-77681672 | None:intergenic | 60.0% | |
| TCGATCTCGGAGAGAGGAGC+TGG | + | chr1.1:77681581-77681600 | None:intergenic | 60.0% | |
| TGACGGAGACGGTGGTTGGT+GGG | + | chr1.1:77681506-77681525 | None:intergenic | 60.0% | |
| TGGAAGAGTGACTCAGCGGC+AGG | + | chr1.1:77681605-77681624 | None:intergenic | 60.0% | |
| TTGACGTACGGCGGCGGAAA+GGG | + | chr1.1:77681540-77681559 | None:intergenic | 60.0% | |
| !! | TTGCGAGTCGGTGACGGAGA+CGG | + | chr1.1:77681517-77681536 | None:intergenic | 60.0% |
| AGGAGCTGGAGTCCAGACGG+TGG | + | chr1.1:77681567-77681586 | None:intergenic | 65.0% | |
| CGCGTGTGTGAGACGTGGCA+AGG | + | chr1.1:77681658-77681677 | None:intergenic | 65.0% | |
| CGGCGGAAAGGGTTGCGAGT+CGG | + | chr1.1:77681529-77681548 | None:intergenic | 65.0% | |
| CTTGACGTACGGCGGCGGAA+AGG | + | chr1.1:77681541-77681560 | None:intergenic | 65.0% | |
| GGTGTCTTGACGTACGGCGG+CGG | + | chr1.1:77681546-77681565 | None:intergenic | 65.0% | |
| ! | AAGCTGGCTCTTGGGGGCAG+TGG | - | chr1.1:77684506-77684525 | MS.gene71742:CDS | 65.0% |
| ! | AGCTGGCTCTTGGGGGCAGT+GGG | - | chr1.1:77684507-77684526 | MS.gene71742:CDS | 65.0% |
| ! | GACGGAGACGGTGGTTGGTG+GGG | + | chr1.1:77681505-77681524 | None:intergenic | 65.0% |
| ! | GTGACGGAGACGGTGGTTGG+TGG | + | chr1.1:77681507-77681526 | None:intergenic | 65.0% |
| !! | AGGGGCGTCGGAAACGTCGA+TGG | + | chr1.1:77681633-77681652 | None:intergenic | 65.0% |
| !! | TCGGTGACGGAGACGGTGGT+TGG | + | chr1.1:77681510-77681529 | None:intergenic | 65.0% |
| ACCGGCGCGTGTGTGAGACG+TGG | + | chr1.1:77681663-77681682 | None:intergenic | 70.0% | |
| GCCACGTCTCACACACGCGC+CGG | - | chr1.1:77681659-77681678 | MS.gene71742:intron | 70.0% | |
| ! | CGTGGCAAGGTCAGGGGCGT+CGG | + | chr1.1:77681645-77681664 | None:intergenic | 70.0% |
| !! | CGAGTCGGTGACGGAGACGG+TGG | + | chr1.1:77681514-77681533 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 77681473 | 77684926 | 77681473 | ID=MS.gene71742 |
| chr1.1 | mRNA | 77681473 | 77684926 | 77681473 | ID=MS.gene71742.t1;Parent=MS.gene71742 |
| chr1.1 | exon | 77684451 | 77684926 | 77684451 | ID=MS.gene71742.t1.exon1;Parent=MS.gene71742.t1 |
| chr1.1 | CDS | 77684451 | 77684926 | 77684451 | ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1 |
| chr1.1 | exon | 77682900 | 77682999 | 77682900 | ID=MS.gene71742.t1.exon2;Parent=MS.gene71742.t1 |
| chr1.1 | CDS | 77682900 | 77682999 | 77682900 | ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1 |
| chr1.1 | exon | 77682720 | 77682815 | 77682720 | ID=MS.gene71742.t1.exon3;Parent=MS.gene71742.t1 |
| chr1.1 | CDS | 77682720 | 77682815 | 77682720 | ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1 |
| chr1.1 | exon | 77682556 | 77682636 | 77682556 | ID=MS.gene71742.t1.exon4;Parent=MS.gene71742.t1 |
| chr1.1 | CDS | 77682556 | 77682636 | 77682556 | ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1 |
| chr1.1 | exon | 77681473 | 77681535 | 77681473 | ID=MS.gene71742.t1.exon5;Parent=MS.gene71742.t1 |
| chr1.1 | CDS | 77681473 | 77681535 | 77681473 | ID=cds.MS.gene71742.t1;Parent=MS.gene71742.t1 |
| Gene Sequence |
| Protein sequence |
