Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44543.t1 | XP_003592576.3 | 96.6 | 297 | 7 | 1 | 1 | 297 | 1 | 294 | 1.70E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44543.t1 | P43394 | 50.7 | 278 | 128 | 3 | 26 | 294 | 36 | 313 | 1.7e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44543.t1 | A0A396JYK0 | 96.6 | 297 | 7 | 1 | 1 | 297 | 1 | 294 | 1.2e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene44543 | 0.833015 | 6.80E-56 | -1.69E-46 |
| MS.gene049173 | MS.gene44543 | 0.827825 | 1.26E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene44543 | 0.851049 | 1.14E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene44543 | 0.870815 | 1.10E-66 | -1.69E-46 |
| MS.gene049232 | MS.gene44543 | 0.841752 | 3.93E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene44543 | 0.864526 | 1.14E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene44543 | 0.860273 | 2.32E-63 | -1.69E-46 |
| MS.gene049627 | MS.gene44543 | 0.833315 | 5.72E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene44543 | 0.834588 | 2.75E-56 | -1.69E-46 |
| MS.gene049865 | MS.gene44543 | 0.803074 | 4.15E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene44543 | 0.832711 | 8.09E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene44543 | 0.874078 | 8.94E-68 | -1.69E-46 |
| MS.gene050165 | MS.gene44543 | 0.898402 | 5.50E-77 | -1.69E-46 |
| MS.gene050170 | MS.gene44543 | 0.806204 | 9.22E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene44543 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene44543 | 0.829403 | 5.25E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene44543 | 0.88426 | 2.23E-71 | -1.69E-46 |
| MS.gene050444 | MS.gene44543 | 0.811817 | 5.79E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene44543 | 0.805156 | 1.53E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene44543 | 0.867853 | 1.01E-65 | -1.69E-46 |
| MS.gene050518 | MS.gene44543 | 0.905033 | 6.58E-80 | -1.69E-46 |
| MS.gene050577 | MS.gene44543 | 0.83209 | 1.15E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene44543 | 0.86933 | 3.36E-66 | -1.69E-46 |
| MS.gene050675 | MS.gene44543 | 0.833776 | 4.39E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene44543 | 0.840104 | 1.06E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene44543 | 0.822371 | 2.45E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene44543 | 0.801554 | 8.53E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene44543 | 0.815723 | 7.99E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene44543 | 0.811796 | 5.85E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene44543 | 0.910178 | 2.50E-82 | -1.69E-46 |
| MS.gene05087 | MS.gene44543 | 0.890895 | 6.52E-74 | -1.69E-46 |
| MS.gene050904 | MS.gene44543 | 0.893759 | 4.66E-75 | -1.69E-46 |
| MS.gene050986 | MS.gene44543 | 0.843341 | 1.49E-58 | -1.69E-46 |
| MS.gene05100 | MS.gene44543 | 0.822823 | 1.93E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene44543 | 0.86181 | 7.90E-64 | -1.69E-46 |
| MS.gene051367 | MS.gene44543 | -0.811777 | 5.91E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene44543 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene44543 | 0.819885 | 9.18E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene44543 | 0.803506 | 3.37E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene44543 | 0.830424 | 2.96E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene44543 | 0.839 | 2.06E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene44543 | 0.848298 | 6.70E-60 | -1.69E-46 |
| MS.gene052916 | MS.gene44543 | 0.808935 | 2.42E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene44543 | 0.811642 | 6.32E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene44543 | 0.815444 | 9.21E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene44543 | 0.814401 | 1.57E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene44543 | 0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene44543 | 0.83572 | 1.42E-56 | -1.69E-46 |
| MS.gene054600 | MS.gene44543 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene054638 | MS.gene44543 | 0.860867 | 1.53E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene44543 | 0.845739 | 3.37E-59 | -1.69E-46 |
| MS.gene05470 | MS.gene44543 | 0.804367 | 2.23E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene44543 | 0.865997 | 3.93E-65 | -1.69E-46 |
| MS.gene055362 | MS.gene44543 | 0.843825 | 1.10E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene44543 | 0.846369 | 2.27E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene44543 | 0.827928 | 1.19E-54 | -1.69E-46 |
| MS.gene055634 | MS.gene44543 | 0.918785 | 1.01E-86 | -1.69E-46 |
| MS.gene055636 | MS.gene44543 | 0.816609 | 5.06E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene44543 | 0.866431 | 2.87E-65 | -1.69E-46 |
| MS.gene055748 | MS.gene44543 | 0.843717 | 1.18E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene44543 | 0.854531 | 1.16E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene44543 | 0.864913 | 8.63E-65 | -1.69E-46 |
| MS.gene055776 | MS.gene44543 | 0.858318 | 8.94E-63 | -1.69E-46 |
| MS.gene055849 | MS.gene44543 | 0.903658 | 2.76E-79 | -1.69E-46 |
| MS.gene05589 | MS.gene44543 | 0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene44543 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene44543 | 0.808728 | 2.69E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene44543 | 0.858233 | 9.48E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene44543 | 0.856693 | 2.71E-62 | -1.69E-46 |
| MS.gene056549 | MS.gene44543 | 0.863126 | 3.11E-64 | -1.69E-46 |
| MS.gene056618 | MS.gene44543 | -0.817433 | 3.31E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene44543 | 0.863363 | 2.63E-64 | -1.69E-46 |
| MS.gene056692 | MS.gene44543 | 0.83601 | 1.20E-56 | -1.69E-46 |
| MS.gene056898 | MS.gene44543 | 0.816166 | 6.36E-52 | -1.69E-46 |
| MS.gene057684 | MS.gene44543 | 0.842253 | 2.89E-58 | -1.69E-46 |
| MS.gene057687 | MS.gene44543 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene44543 | 0.834759 | 2.49E-56 | -1.69E-46 |
| MS.gene057872 | MS.gene44543 | 0.847256 | 1.30E-59 | -1.69E-46 |
| MS.gene058334 | MS.gene44543 | -0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene058335 | MS.gene44543 | 0.852177 | 5.48E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene44543 | 0.860747 | 1.66E-63 | -1.69E-46 |
| MS.gene058719 | MS.gene44543 | 0.879151 | 1.57E-69 | -1.69E-46 |
| MS.gene058773 | MS.gene44543 | 0.855975 | 4.40E-62 | -1.69E-46 |
| MS.gene059022 | MS.gene44543 | 0.854043 | 1.60E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene44543 | 0.820636 | 6.18E-53 | -1.69E-46 |
| MS.gene059026 | MS.gene44543 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene059029 | MS.gene44543 | 0.810321 | 1.22E-50 | -1.69E-46 |
| MS.gene059079 | MS.gene44543 | 0.887394 | 1.48E-72 | -1.69E-46 |
| MS.gene05912 | MS.gene44543 | 0.859173 | 4.97E-63 | -1.69E-46 |
| MS.gene059677 | MS.gene44543 | 0.871582 | 6.12E-67 | -1.69E-46 |
| MS.gene059718 | MS.gene44543 | 0.821168 | 4.66E-53 | -1.69E-46 |
| MS.gene059756 | MS.gene44543 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene44543 | 0.825705 | 4.05E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene44543 | 0.8557 | 5.29E-62 | -1.69E-46 |
| MS.gene060526 | MS.gene44543 | 0.826755 | 2.28E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene44543 | -0.821649 | 3.61E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene44543 | 0.890939 | 6.26E-74 | -1.69E-46 |
| MS.gene060762 | MS.gene44543 | 0.86296 | 3.50E-64 | -1.69E-46 |
| MS.gene06077 | MS.gene44543 | 0.843316 | 1.51E-58 | -1.69E-46 |
| MS.gene060823 | MS.gene44543 | -0.831231 | 1.88E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene44543 | 0.851854 | 6.77E-61 | -1.69E-46 |
| MS.gene061134 | MS.gene44543 | 0.8111 | 8.29E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene44543 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene061171 | MS.gene44543 | 0.821577 | 3.75E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44543.t1 | MTR_1g108710 | 98.155 | 271 | 5 | 0 | 27 | 297 | 1 | 271 | 0.0 | 543 |
| MS.gene44543.t1 | MTR_1g108710 | 96.390 | 277 | 7 | 1 | 1 | 277 | 1 | 274 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44543.t1 | AT1G15140 | 70.732 | 287 | 77 | 3 | 16 | 297 | 11 | 295 | 1.99e-142 | 403 |
| MS.gene44543.t1 | AT1G15140 | 69.583 | 240 | 66 | 3 | 16 | 250 | 11 | 248 | 1.46e-113 | 329 |
| MS.gene44543.t1 | AT1G15140 | 69.583 | 240 | 66 | 3 | 16 | 250 | 11 | 248 | 1.46e-113 | 329 |
Find 107 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCTCTTCAGGTTTC+TGG | 0.108389 | 1.2:+80801158 | None:intergenic |
| ATCGACCCACCCGAGAAATT+TGG | 0.234673 | 1.2:-80802735 | MS.gene44543:CDS |
| CCTGAAGAGAATGGCTTATC+AGG | 0.258718 | 1.2:-80801151 | MS.gene44543:intron |
| TGTTGAGCTTAGTCCGGTTA+TGG | 0.301742 | 1.2:-80802781 | MS.gene44543:CDS |
| CCTGATAAGCCATTCTCTTC+AGG | 0.302056 | 1.2:+80801151 | None:intergenic |
| TTGCCACTGGATCCGGAATT+AGG | 0.330537 | 1.2:-80802698 | MS.gene44543:intron |
| GTGTGAGACGTGGCAAGGTC+AGG | 0.331915 | 1.2:+80802975 | None:intergenic |
| CTTGTCTTTGCCACTGGATC+CGG | 0.337767 | 1.2:-80802705 | MS.gene44543:CDS |
| GTTGAGCTTAGTCCGGTTAT+GGG | 0.374160 | 1.2:-80802780 | MS.gene44543:CDS |
| CTTAGTCCGGTTATGGGGAA+TGG | 0.384177 | 1.2:-80802774 | MS.gene44543:CDS |
| TTATCCAACCCTTTGTCAAC+TGG | 0.387952 | 1.2:-80800842 | MS.gene44543:CDS |
| ACTGTTCTTGTCTTTGCCAC+TGG | 0.391138 | 1.2:-80802711 | MS.gene44543:CDS |
| TATAGGAGAGATTTAAAGAC+TGG | 0.394111 | 1.2:-80801050 | MS.gene44543:intron |
| ATTCGGTCACTTATTGAGTC+AGG | 0.405073 | 1.2:-80801225 | MS.gene44543:CDS |
| GGCTAAAGTGCGCATGGGAG+TGG | 0.410046 | 1.2:+80803189 | None:intergenic |
| TCAACTGGTGCTGTACTTTG+TGG | 0.414186 | 1.2:-80800827 | MS.gene44543:CDS |
| TTTAAAGACTGGGAATCTTC+CGG | 0.416173 | 1.2:-80801039 | MS.gene44543:CDS |
| CGTTGTGTGGGTTGAAGAAA+GGG | 0.418149 | 1.2:-80802809 | MS.gene44543:CDS |
| GCGTTGTGTGGGTTGAAGAA+AGG | 0.428547 | 1.2:-80802810 | MS.gene44543:CDS |
| CGTAGGATGGACATGGGAAA+GGG | 0.429123 | 1.2:+80803161 | None:intergenic |
| GGCAGAAACTGACCTAATTC+CGG | 0.434711 | 1.2:+80802686 | None:intergenic |
| TCGATCTCGGAGAGAGGAGC+TGG | 0.438598 | 1.2:+80803047 | None:intergenic |
| ACATCTATTCTTGTTGCTGA+TGG | 0.438700 | 1.2:-80799759 | MS.gene44543:CDS |
| TCAAACCCATTCCCCATAAC+CGG | 0.441227 | 1.2:+80802768 | None:intergenic |
| CAACTGGTGCTGTACTTTGT+GGG | 0.442180 | 1.2:-80800826 | MS.gene44543:CDS |
| TTGACGTACGGCGGCGGAAA+GGG | 0.449809 | 1.2:+80803088 | None:intergenic |
| GACTCAATAAGTGACCGAAT+TGG | 0.449902 | 1.2:+80801228 | None:intergenic |
| CTTGACGTACGGCGGCGGAA+AGG | 0.459299 | 1.2:+80803087 | None:intergenic |
| TGACGGAGACGGTGGTTGGT+GGG | 0.462815 | 1.2:+80803122 | None:intergenic |
| TCTCCAGTCCAACTATCATC+TGG | 0.464149 | 1.2:+80800988 | None:intergenic |
| GCGTAGGATGGACATGGGAA+AGG | 0.470876 | 1.2:+80803160 | None:intergenic |
| GTGACGGAGACGGTGGTTGG+TGG | 0.471139 | 1.2:+80803121 | None:intergenic |
| ATAGCAAGAAACGACGGTTT+CGG | 0.475246 | 1.2:+80802912 | None:intergenic |
| TACGTCAAGACACCACCGTC+TGG | 0.479107 | 1.2:-80803073 | MS.gene44543:CDS |
| GTAGGATGGACATGGGAAAG+GGG | 0.482435 | 1.2:+80803162 | None:intergenic |
| TGTGAGACGTGGCAAGGTCA+GGG | 0.483409 | 1.2:+80802976 | None:intergenic |
| TTAGTCCGGTTATGGGGAAT+GGG | 0.485622 | 1.2:-80802773 | MS.gene44543:CDS |
| GAGTGGAGGGTAAGAGGATG+AGG | 0.493794 | 1.2:+80803206 | None:intergenic |
| CGTGGCAAGGTCAGGGGCGT+CGG | 0.495943 | 1.2:+80802983 | None:intergenic |
| GGATGTTGTTGAGCTTAGTC+CGG | 0.502498 | 1.2:-80802787 | MS.gene44543:CDS |
| TAGGATGGACATGGGAAAGG+GGG | 0.503705 | 1.2:+80803163 | None:intergenic |
| AAGAACAGTTCCAAATTTCT+CGG | 0.503898 | 1.2:+80802725 | None:intergenic |
| TGTCTCAACCAGATGATAGT+TGG | 0.504609 | 1.2:-80800996 | MS.gene44543:CDS |
| GACGGAGACGGTGGTTGGTG+GGG | 0.509831 | 1.2:+80803123 | None:intergenic |
| TTATTGTGTGCAGTCCAATT+CGG | 0.511671 | 1.2:-80801242 | MS.gene44543:intron |
| TGGAGAAAGTGGCTTTGTAC+AGG | 0.512190 | 1.2:-80800971 | MS.gene44543:intron |
| CAACCAGATGATAGTTGGAC+TGG | 0.517272 | 1.2:-80800991 | MS.gene44543:CDS |
| ATTGAGTCAGGATTTGATGC+TGG | 0.518551 | 1.2:-80801213 | MS.gene44543:CDS |
| AGAACAGTTCCAAATTTCTC+GGG | 0.523438 | 1.2:+80802726 | None:intergenic |
| GGGTGGGGCTAAAGTGCGCA+TGG | 0.524410 | 1.2:+80803183 | None:intergenic |
| GGTTTAGATTGAAGCGGCGT+AGG | 0.525093 | 1.2:+80803144 | None:intergenic |
| GCATGGGAGTGGAGGGTAAG+AGG | 0.525884 | 1.2:+80803200 | None:intergenic |
| TAAAGTGCGCATGGGAGTGG+AGG | 0.532726 | 1.2:+80803192 | None:intergenic |
| GACGGTGGTGTCTTGACGTA+CGG | 0.543425 | 1.2:+80803076 | None:intergenic |
| GATAGTTGGACTGGAGAAAG+TGG | 0.543932 | 1.2:-80800982 | MS.gene44543:CDS |
| GGTGTCTTGACGTACGGCGG+CGG | 0.544339 | 1.2:+80803082 | None:intergenic |
| TCCACTGCAGAAGCGTTGTG+TGG | 0.545176 | 1.2:-80802822 | MS.gene44543:CDS |
| TAGATTGAAGCGGCGTAGGA+TGG | 0.550133 | 1.2:+80803148 | None:intergenic |
| GATGAGGCGGTGTTAATGAA+AGG | 0.551705 | 1.2:+80803222 | None:intergenic |
| AAAGGGTTGCGAGTCGGTGA+CGG | 0.551990 | 1.2:+80803105 | None:intergenic |
| GGCCAGAAACCTGAAGAGAA+TGG | 0.557359 | 1.2:-80801160 | MS.gene44543:CDS |
| TTGCGAGTCGGTGACGGAGA+CGG | 0.557465 | 1.2:+80803111 | None:intergenic |
| AGGGGCGTCGGAAACGTCGA+TGG | 0.558624 | 1.2:+80802995 | None:intergenic |
| ACAGTTCCAAATTTCTCGGG+TGG | 0.560614 | 1.2:+80802729 | None:intergenic |
| GGAATGGGTTTGATATTAGT+CGG | 0.561988 | 1.2:-80802758 | MS.gene44543:CDS |
| CTCAGCGGCAGGTTCGATCT+CGG | 0.562464 | 1.2:+80803034 | None:intergenic |
| CGCGTGTGTGAGACGTGGCA+AGG | 0.563503 | 1.2:+80802970 | None:intergenic |
| TCGGTGACGGAGACGGTGGT+TGG | 0.563811 | 1.2:+80803118 | None:intergenic |
| CTCTTAATCGCAAGCTTCGG+CGG | 0.564323 | 1.2:+80802882 | None:intergenic |
| TGGAAGAGTGACTCAGCGGC+AGG | 0.570715 | 1.2:+80803023 | None:intergenic |
| GTACAGCACCAGTTGACAAA+GGG | 0.571677 | 1.2:+80800834 | None:intergenic |
| GAGAGGAGCTGGAGTCCAGA+CGG | 0.574346 | 1.2:+80803058 | None:intergenic |
| GGTGGGGCTAAAGTGCGCAT+GGG | 0.577657 | 1.2:+80803184 | None:intergenic |
| TCATCTGGTTGAGACAATAC+AGG | 0.579533 | 1.2:+80801003 | None:intergenic |
| TTGAGCTTAGTCCGGTTATG+GGG | 0.580245 | 1.2:-80802779 | MS.gene44543:CDS |
| CAGTTCCAAATTTCTCGGGT+GGG | 0.584521 | 1.2:+80802730 | None:intergenic |
| CCACTCTTAATCGCAAGCTT+CGG | 0.586640 | 1.2:+80802879 | None:intergenic |
| GTGAGACGTGGCAAGGTCAG+GGG | 0.594184 | 1.2:+80802977 | None:intergenic |
| CCCACACAACGCTTCTGCAG+TGG | 0.596333 | 1.2:+80802821 | None:intergenic |
| TGGTGGGGTTTAGATTGAAG+CGG | 0.600108 | 1.2:+80803138 | None:intergenic |
| GAAGCGGCGTAGGATGGACA+TGG | 0.600277 | 1.2:+80803154 | None:intergenic |
| AGCACCAGTTGACAAAGGGT+TGG | 0.602600 | 1.2:+80800838 | None:intergenic |
| AGTACAGCACCAGTTGACAA+AGG | 0.607829 | 1.2:+80800833 | None:intergenic |
| GCAGGTTCGATCTCGGAGAG+AGG | 0.610044 | 1.2:+80803041 | None:intergenic |
| CCGAAGCTTGCGATTAAGAG+TGG | 0.610290 | 1.2:-80802879 | MS.gene44543:CDS |
| CCACTGCAGAAGCGTTGTGT+GGG | 0.619285 | 1.2:-80802821 | MS.gene44543:CDS |
| AGGAGCTGGAGTCCAGACGG+TGG | 0.619490 | 1.2:+80803061 | None:intergenic |
| CAGTATCTTCAGCTTAAAGT+CGG | 0.619863 | 1.2:-80802942 | MS.gene44543:CDS |
| GCCACGTCTCACACACGCGC+CGG | 0.620260 | 1.2:-80802966 | MS.gene44543:CDS |
| CGGCGGAAAGGGTTGCGAGT+CGG | 0.621174 | 1.2:+80803099 | None:intergenic |
| CAGGATTTGATGCTGGCAAG+AGG | 0.625026 | 1.2:-80801206 | MS.gene44543:CDS |
| AAAGTGCGCATGGGAGTGGA+GGG | 0.625677 | 1.2:+80803193 | None:intergenic |
| TGACCTAATTCCGGATCCAG+TGG | 0.627958 | 1.2:+80802695 | None:intergenic |
| TGGAGGGTAAGAGGATGAGG+CGG | 0.630907 | 1.2:+80803209 | None:intergenic |
| ATAGGAGAGATTTAAAGACT+GGG | 0.643444 | 1.2:-80801049 | MS.gene44543:intron |
| TTTAAGCTGAAGATACTGAC+CGG | 0.649623 | 1.2:+80802947 | None:intergenic |
| CGGAAACGTCGATGGAAACG+TGG | 0.650313 | 1.2:+80803003 | None:intergenic |
| GGCTGCATATACGAGAGCAA+AGG | 0.651480 | 1.2:-80800867 | MS.gene44543:CDS |
| TACAGGTACAATCTTGACAC+CGG | 0.656089 | 1.2:+80801020 | None:intergenic |
| CGAGTCGGTGACGGAGACGG+TGG | 0.672480 | 1.2:+80803114 | None:intergenic |
| GTTGTGTGGGTTGAAGAAAG+GGG | 0.680851 | 1.2:-80802808 | MS.gene44543:CDS |
| AAGCGGCGTAGGATGGACAT+GGG | 0.692247 | 1.2:+80803155 | None:intergenic |
| ACCGGCGCGTGTGTGAGACG+TGG | 0.704486 | 1.2:+80802965 | None:intergenic |
| GGTGGTGTCTTGACGTACGG+CGG | 0.712276 | 1.2:+80803079 | None:intergenic |
| AACGTGGAAGAGTGACTCAG+CGG | 0.719906 | 1.2:+80803019 | None:intergenic |
| GAAGCGATAGCAAGAAACGA+CGG | 0.765356 | 1.2:+80802906 | None:intergenic |
| TGGGCAGAAACAGATGACTG+AGG | 0.793337 | 1.2:-80800807 | MS.gene44543:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTAAAACAATCAAA+AGG | - | chr1.2:80802415-80802434 | MS.gene44543:intron | 10.0% |
| !! | AAAAGAATTGTATACTTAAT+AGG | + | chr1.2:80801181-80801200 | None:intergenic | 15.0% |
| !! | AAAGAATTGTATACTTAATA+GGG | + | chr1.2:80801180-80801199 | None:intergenic | 15.0% |
| !! | AACTACATTATTCAAAAATA+GGG | - | chr1.2:80802577-80802596 | MS.gene44543:intron | 15.0% |
| !! | ATAATAACATTGATATTGAA+AGG | + | chr1.2:80803165-80803184 | None:intergenic | 15.0% |
| !! | ATATATCAATAAAAGAACAA+AGG | + | chr1.2:80802984-80803003 | None:intergenic | 15.0% |
| !! | CACTAATAATACATATATAT+AGG | + | chr1.2:80800673-80800692 | None:intergenic | 15.0% |
| !!! | ACAATTTTCTTTTATGTTAT+AGG | - | chr1.2:80801888-80801907 | MS.gene44543:intron | 15.0% |
| !!! | TTATTTTCCAAAATTTGATT+TGG | - | chr1.2:80800328-80800347 | MS.gene44543:intron | 15.0% |
| !! | AACATCGAATCAATATATTT+AGG | - | chr1.2:80800926-80800945 | MS.gene44543:intron | 20.0% |
| !! | AATATCAATGTTATTATTGC+AGG | - | chr1.2:80803168-80803187 | MS.gene44543:CDS | 20.0% |
| !! | ACAATATTATCCTTAGAAAA+AGG | + | chr1.2:80801447-80801466 | None:intergenic | 20.0% |
| !! | ACATCGAATCAATATATTTA+GGG | - | chr1.2:80800927-80800946 | MS.gene44543:intron | 20.0% |
| !! | CAAAAATATCTATATTCGAA+AGG | + | chr1.2:80801314-80801333 | None:intergenic | 20.0% |
| !! | CAACTACATTATTCAAAAAT+AGG | - | chr1.2:80802576-80802595 | MS.gene44543:intron | 20.0% |
| !! | TTAATACTGACAATTATACA+AGG | + | chr1.2:80800456-80800475 | None:intergenic | 20.0% |
| !! | TTGTATAATTGTCAGTATTA+AGG | - | chr1.2:80800455-80800474 | MS.gene44543:intron | 20.0% |
| !!! | ATTCTTTTTCACTTATATCA+TGG | - | chr1.2:80801193-80801212 | MS.gene44543:CDS | 20.0% |
| !!! | CTTTCGAATATAGATATTTT+TGG | - | chr1.2:80801312-80801331 | MS.gene44543:intron | 20.0% |
| ! | AAACGATGAATTCAAAGAAA+AGG | + | chr1.2:80801475-80801494 | None:intergenic | 25.0% |
| ! | AATGTGAAAAACACTTTGAA+TGG | - | chr1.2:80801558-80801577 | MS.gene44543:intron | 25.0% |
| ! | ACTAAGAAGCTATTAACAAT+TGG | - | chr1.2:80800733-80800752 | MS.gene44543:intron | 25.0% |
| ! | AGAATATCATGACAAATATC+AGG | - | chr1.2:80802909-80802928 | MS.gene44543:CDS | 25.0% |
| ! | AGAGAGTAAAGAGAAAATAT+TGG | + | chr1.2:80801667-80801686 | None:intergenic | 25.0% |
| ! | AGGAAAATGATGATCAATAA+TGG | + | chr1.2:80801045-80801064 | None:intergenic | 25.0% |
| ! | AGTACAGAGTTATTGTAAAA+AGG | + | chr1.2:80801850-80801869 | None:intergenic | 25.0% |
| ! | ATAATGTCTTGGATTTGTAA+AGG | + | chr1.2:80802667-80802686 | None:intergenic | 25.0% |
| ! | GAAAGATGATAGCAATAATA+AGG | + | chr1.2:80802176-80802195 | None:intergenic | 25.0% |
| ! | GGAAAATGATGATCAATAAT+GGG | + | chr1.2:80801044-80801063 | None:intergenic | 25.0% |
| ! | TCTTTACTCTCTTTGATATT+GGG | - | chr1.2:80801675-80801694 | MS.gene44543:intron | 25.0% |
| ! | TGTTGCAGATATTAAGATTA+TGG | - | chr1.2:80800625-80800644 | MS.gene44543:intron | 25.0% |
| ! | TTGTTATGATCTAGTAAAGT+AGG | - | chr1.2:80800538-80800557 | MS.gene44543:intron | 25.0% |
| !! | ATCAACACCAAATCAAATTT+TGG | + | chr1.2:80800338-80800357 | None:intergenic | 25.0% |
| !! | ATTCTTTGTTCCTTTTTCTA+AGG | - | chr1.2:80801434-80801453 | MS.gene44543:intron | 25.0% |
| !! | TATTTGAAGTCTACCTAATT+AGG | + | chr1.2:80802361-80802380 | None:intergenic | 25.0% |
| !!! | ATTTTAGCCATTTCCTAATT+AGG | - | chr1.2:80802345-80802364 | MS.gene44543:intron | 25.0% |
| !!! | CTTTGCAATTTTAATCATTG+CGG | + | chr1.2:80802387-80802406 | None:intergenic | 25.0% |
| AAACAATCTTTACCACTTGA+AGG | + | chr1.2:80802047-80802066 | None:intergenic | 30.0% | |
| AAGAACAGTTCCAAATTTCT+CGG | + | chr1.2:80800233-80800252 | None:intergenic | 30.0% | |
| AAGAATCACCAAAACTAACA+AGG | - | chr1.2:80802635-80802654 | MS.gene44543:intron | 30.0% | |
| AAGTAGTGATTTACATGCAA+AGG | + | chr1.2:80801611-80801630 | None:intergenic | 30.0% | |
| AAGTCTACCTAATTAGGAAA+TGG | + | chr1.2:80802355-80802374 | None:intergenic | 30.0% | |
| AATAATGTAGTTGCAGTTGT+TGG | + | chr1.2:80802569-80802588 | None:intergenic | 30.0% | |
| ACACTTTATAGCACTTACAT+TGG | + | chr1.2:80801338-80801357 | None:intergenic | 30.0% | |
| ACAGGACACAAAATTTCTAA+AGG | + | chr1.2:80800566-80800585 | None:intergenic | 30.0% | |
| ATAGGAGAGATTTAAAGACT+GGG | - | chr1.2:80801906-80801925 | MS.gene44543:intron | 30.0% | |
| ATTATTCAAAAATAGGGTCC+TGG | - | chr1.2:80802583-80802602 | MS.gene44543:intron | 30.0% | |
| CACATTCAAAATCATACTCA+AGG | + | chr1.2:80801544-80801563 | None:intergenic | 30.0% | |
| CAGGACACAAAATTTCTAAA+GGG | + | chr1.2:80800565-80800584 | None:intergenic | 30.0% | |
| CTCTTTACTCTCTTTGATAT+TGG | - | chr1.2:80801674-80801693 | MS.gene44543:intron | 30.0% | |
| GCTTGGATTTGTACATAAAT+AGG | + | chr1.2:80801065-80801084 | None:intergenic | 30.0% | |
| GTAATGAAGTAATGCTACAT+TGG | + | chr1.2:80801241-80801260 | None:intergenic | 30.0% | |
| GTACAATCCATATCATTCTA+AGG | + | chr1.2:80800872-80800891 | None:intergenic | 30.0% | |
| GTTCGACACATAAATTGTTT+CGG | - | chr1.2:80801517-80801536 | MS.gene44543:intron | 30.0% | |
| GTTTGATCCTTAGAATGATA+TGG | - | chr1.2:80800862-80800881 | MS.gene44543:CDS | 30.0% | |
| TATAGGAGAGATTTAAAGAC+TGG | - | chr1.2:80801905-80801924 | MS.gene44543:intron | 30.0% | |
| TATCATGACAAATATCAGGA+AGG | - | chr1.2:80802913-80802932 | MS.gene44543:CDS | 30.0% | |
| TCTTTCTTTCACTCTATGAT+AGG | + | chr1.2:80802249-80802268 | None:intergenic | 30.0% | |
| TGTAGCATTACTTCATTACT+CGG | - | chr1.2:80801242-80801261 | MS.gene44543:intron | 30.0% | |
| TGTATACTTAATAGGGAACT+TGG | + | chr1.2:80801173-80801192 | None:intergenic | 30.0% | |
| TTGGAAGAAGAAAGAAAAAG+AGG | + | chr1.2:80802550-80802569 | None:intergenic | 30.0% | |
| ! | AAAATGCATGTCTCTTTTCT+TGG | - | chr1.2:80802489-80802508 | MS.gene44543:intron | 30.0% |
| ! | AACATTTTCAACCCAAATTG+AGG | + | chr1.2:80800293-80800312 | None:intergenic | 30.0% |
| ! | AGGACACAAAATTTCTAAAG+GGG | + | chr1.2:80800564-80800583 | None:intergenic | 30.0% |
| ! | CTGATGTGAGACTATTTTAT+GGG | - | chr1.2:80801773-80801792 | MS.gene44543:intron | 30.0% |
| ! | TCTGATGTGAGACTATTTTA+TGG | - | chr1.2:80801772-80801791 | MS.gene44543:intron | 30.0% |
| ! | TGACAACAATGTCATCATTT+TGG | + | chr1.2:80802706-80802725 | None:intergenic | 30.0% |
| ! | TGATGTGAGACTATTTTATG+GGG | - | chr1.2:80801774-80801793 | MS.gene44543:intron | 30.0% |
| !! | ATGATGGATCAATAATGTCT+TGG | + | chr1.2:80802678-80802697 | None:intergenic | 30.0% |
| !! | CGACAGTAATGATTGTTTTT+AGG | - | chr1.2:80802269-80802288 | MS.gene44543:intron | 30.0% |
| !! | GGATAAAACCTTGTTAGTTT+TGG | + | chr1.2:80802646-80802665 | None:intergenic | 30.0% |
| ACATCTATTCTTGTTGCTGA+TGG | - | chr1.2:80803196-80803215 | MS.gene44543:CDS | 35.0% | |
| ACTCTTGCACTTACTTTCTT+TGG | + | chr1.2:80800844-80800863 | None:intergenic | 35.0% | |
| AGAACAGTTCCAAATTTCTC+GGG | + | chr1.2:80800232-80800251 | None:intergenic | 35.0% | |
| AGCGTCAATAAGTTTCAACT+AGG | - | chr1.2:80803101-80803120 | MS.gene44543:CDS | 35.0% | |
| ATAGACATGATTACCTTTGC+AGG | - | chr1.2:80802067-80802086 | MS.gene44543:intron | 35.0% | |
| ATCGTAAAATCAAGGAAGCT+TGG | + | chr1.2:80801082-80801101 | None:intergenic | 35.0% | |
| ATGACACATTCACAACCTAA+AGG | + | chr1.2:80800764-80800783 | None:intergenic | 35.0% | |
| ATGATGACATTGTTGTCACT+CGG | - | chr1.2:80802708-80802727 | MS.gene44543:CDS | 35.0% | |
| ATGGAACATCCTTTCCAAAA+CGG | + | chr1.2:80802759-80802778 | None:intergenic | 35.0% | |
| CAGTATCTTCAGCTTAAAGT+CGG | - | chr1.2:80800013-80800032 | MS.gene44543:intron | 35.0% | |
| GAATTCATCGTTTCTACTGA+TGG | - | chr1.2:80801482-80801501 | MS.gene44543:intron | 35.0% | |
| GGCTATTCATCGTAAAATCA+AGG | + | chr1.2:80801090-80801109 | None:intergenic | 35.0% | |
| TAAGTAAACAAGAACGACAG+TGG | + | chr1.2:80802216-80802235 | None:intergenic | 35.0% | |
| TGGATTGTACTGAATGTACT+CGG | - | chr1.2:80800882-80800901 | MS.gene44543:intron | 35.0% | |
| TGTCATGATATTCTCCCAAT+TGG | + | chr1.2:80802903-80802922 | None:intergenic | 35.0% | |
| TTACGATTCAAAATCGCTTG+TGG | + | chr1.2:80801146-80801165 | None:intergenic | 35.0% | |
| TTAGTGATTCATTGGCACTA+TGG | - | chr1.2:80800585-80800604 | MS.gene44543:intron | 35.0% | |
| TTATTGTGTGCAGTCCAATT+CGG | - | chr1.2:80801713-80801732 | MS.gene44543:intron | 35.0% | |
| TTTAAAGACTGGGAATCTTC+CGG | - | chr1.2:80801916-80801935 | MS.gene44543:intron | 35.0% | |
| TTTAAGCTGAAGATACTGAC+CGG | + | chr1.2:80800011-80800030 | None:intergenic | 35.0% | |
| ! | AGGTAAAGTGTGTGGAATTT+TGG | - | chr1.2:80802004-80802023 | MS.gene44543:intron | 35.0% |
| ! | ATTATTAGTGCCACTCTGTT+CGG | - | chr1.2:80800683-80800702 | MS.gene44543:intron | 35.0% |
| ! | CATCATTTTGGACAGTATGA+TGG | + | chr1.2:80802694-80802713 | None:intergenic | 35.0% |
| ! | GGAATGGGTTTGATATTAGT+CGG | - | chr1.2:80800197-80800216 | MS.gene44543:intron | 35.0% |
| ! | TTAGGTTGTGAATGTGTCAT+TGG | - | chr1.2:80800764-80800783 | MS.gene44543:intron | 35.0% |
| !! | AGTTTTGGTGATTCTTCTAC+CGG | + | chr1.2:80802631-80802650 | None:intergenic | 35.0% |
| !!! | TTTTGGTGAAGAGTGTTGTT+GGG | - | chr1.2:80800110-80800129 | MS.gene44543:intron | 35.0% |
| !!! | TTTTTGGTGAAGAGTGTTGT+TGG | - | chr1.2:80800109-80800128 | MS.gene44543:intron | 35.0% |
| AAGTATGAGAGGGTTCCAAT+TGG | - | chr1.2:80802885-80802904 | MS.gene44543:CDS | 40.0% | |
| ACAAAAAACTCCGAACAGAG+TGG | + | chr1.2:80800696-80800715 | None:intergenic | 40.0% | |
| AGAAGAAGAAGCTAAGCACA+AGG | - | chr1.2:80800979-80800998 | MS.gene44543:CDS | 40.0% | |
| AGTATGAGAGGGTTCCAATT+GGG | - | chr1.2:80802886-80802905 | MS.gene44543:CDS | 40.0% | |
| AGTGCCAATGAATCACTAAC+AGG | + | chr1.2:80800584-80800603 | None:intergenic | 40.0% | |
| ATAGCAAGAAACGACGGTTT+CGG | + | chr1.2:80800046-80800065 | None:intergenic | 40.0% | |
| ATCACTCTACAAGTCTACCA+AGG | + | chr1.2:80801394-80801413 | None:intergenic | 40.0% | |
| ATCATCATTGAAGGAGCTAG+AGG | - | chr1.2:80802795-80802814 | MS.gene44543:CDS | 40.0% | |
| ATTCGGTCACTTATTGAGTC+AGG | - | chr1.2:80801730-80801749 | MS.gene44543:intron | 40.0% | |
| ATTGAGTCAGGATTTGATGC+TGG | - | chr1.2:80801742-80801761 | MS.gene44543:intron | 40.0% | |
| ATTGTACTGAATGTACTCGG+AGG | - | chr1.2:80800885-80800904 | MS.gene44543:intron | 40.0% | |
| CGCTTGTGGCATAACATAAT+TGG | + | chr1.2:80801132-80801151 | None:intergenic | 40.0% | |
| CTCACTTACTACTTGTACAC+CGG | - | chr1.2:80802609-80802628 | MS.gene44543:intron | 40.0% | |
| CTTTGTACAGGTAAAGTGTG+TGG | - | chr1.2:80801996-80802015 | MS.gene44543:intron | 40.0% | |
| GAACCCTCTCATACTTTATG+CGG | + | chr1.2:80802881-80802900 | None:intergenic | 40.0% | |
| GACTCAATAAGTGACCGAAT+TGG | + | chr1.2:80801730-80801749 | None:intergenic | 40.0% | |
| GTCAGTTTCTGCCTCAATTT+GGG | - | chr1.2:80800279-80800298 | MS.gene44543:intron | 40.0% | |
| GTGTCCTGTTAGTGATTCAT+TGG | - | chr1.2:80800577-80800596 | MS.gene44543:intron | 40.0% | |
| GTTTCTGTTGCAACTCTATC+TGG | - | chr1.2:80801585-80801604 | MS.gene44543:intron | 40.0% | |
| TAACAATTGGCGTTGCCTTT+AGG | - | chr1.2:80800746-80800765 | MS.gene44543:intron | 40.0% | |
| TACAGGTACAATCTTGACAC+CGG | + | chr1.2:80801938-80801957 | None:intergenic | 40.0% | |
| TCATCTGGTTGAGACAATAC+AGG | + | chr1.2:80801955-80801974 | None:intergenic | 40.0% | |
| TGATGACATTGTTGTCACTC+GGG | - | chr1.2:80802709-80802728 | MS.gene44543:CDS | 40.0% | |
| TGGCATAACATAATTGGTCG+AGG | + | chr1.2:80801126-80801145 | None:intergenic | 40.0% | |
| TGGTAGACTTGTAGAGTGAT+TGG | - | chr1.2:80801394-80801413 | MS.gene44543:intron | 40.0% | |
| TGTCTCAACCAGATGATAGT+TGG | - | chr1.2:80801959-80801978 | MS.gene44543:intron | 40.0% | |
| TTATCCAACCCTTTGTCAAC+TGG | - | chr1.2:80802113-80802132 | MS.gene44543:intron | 40.0% | |
| TTTAGGAAACCGAACCTACT+AGG | - | chr1.2:80802286-80802305 | MS.gene44543:intron | 40.0% | |
| TTTGCTTGACTACCTTCAAG+TGG | - | chr1.2:80802032-80802051 | MS.gene44543:intron | 40.0% | |
| ! | GCTATAAAGTGTTTCAGCCA+TGG | - | chr1.2:80801346-80801365 | MS.gene44543:intron | 40.0% |
| !! | GAGTGGTGTGTTTGAGTTTT+TGG | - | chr1.2:80800093-80800112 | MS.gene44543:intron | 40.0% |
| !! | TATGAGGGCATCATCATTGA+AGG | - | chr1.2:80802786-80802805 | MS.gene44543:CDS | 40.0% |
| !!! | GTTTTGGAAAGGATGTTCCA+TGG | - | chr1.2:80802758-80802777 | MS.gene44543:CDS | 40.0% |
| AACACCAGTTGACACAAACC+AGG | + | chr1.2:80803071-80803090 | None:intergenic | 45.0% | |
| AAGCTAAGCACAAGGCCATA+GGG | - | chr1.2:80800987-80801006 | MS.gene44543:CDS | 45.0% | |
| ACAGTTCCAAATTTCTCGGG+TGG | + | chr1.2:80800229-80800248 | None:intergenic | 45.0% | |
| ACCACCGCATAAAGTATGAG+AGG | - | chr1.2:80802874-80802893 | MS.gene44543:CDS | 45.0% | |
| ACCTAACTGATAGACAGTCG+AGG | - | chr1.2:80800793-80800812 | MS.gene44543:intron | 45.0% | |
| ACTGTTCTTGTCTTTGCCAC+TGG | - | chr1.2:80800244-80800263 | MS.gene44543:intron | 45.0% | |
| AGAGCTAGTCCTAGTAGGTT+CGG | + | chr1.2:80802298-80802317 | None:intergenic | 45.0% | |
| AGTACAGCACCAGTTGACAA+AGG | + | chr1.2:80802125-80802144 | None:intergenic | 45.0% | |
| ATTCCAGAGCTAGTCCTAGT+AGG | + | chr1.2:80802303-80802322 | None:intergenic | 45.0% | |
| CAACCAGATGATAGTTGGAC+TGG | - | chr1.2:80801964-80801983 | MS.gene44543:intron | 45.0% | |
| CAAGTAGTAAGTGAGAGACC+AGG | + | chr1.2:80802604-80802623 | None:intergenic | 45.0% | |
| CAGTTCCAAATTTCTCGGGT+GGG | + | chr1.2:80800228-80800247 | None:intergenic | 45.0% | |
| CATCTCTCAATACAGTGTCC+TGG | - | chr1.2:80803050-80803069 | MS.gene44543:CDS | 45.0% | |
| CCACCGCATAAAGTATGAGA+GGG | - | chr1.2:80802875-80802894 | MS.gene44543:CDS | 45.0% | |
| CCACTCTTAATCGCAAGCTT+CGG | + | chr1.2:80800079-80800098 | None:intergenic | 45.0% | |
| CCTAACTGATAGACAGTCGA+GGG | - | chr1.2:80800794-80800813 | MS.gene44543:intron | 45.0% | |
| CCTGAAGAGAATGGCTTATC+AGG | - | chr1.2:80801804-80801823 | MS.gene44543:intron | 45.0% | |
| CCTGATAAGCCATTCTCTTC+AGG | + | chr1.2:80801807-80801826 | None:intergenic | 45.0% | |
| CTAACTGATAGACAGTCGAG+GGG | - | chr1.2:80800795-80800814 | MS.gene44543:intron | 45.0% | |
| CTCTACAAGTCTACCAAGGA+AGG | + | chr1.2:80801390-80801409 | None:intergenic | 45.0% | |
| GAAAAGTCTCCTTCTCCCTA+TGG | + | chr1.2:80801005-80801024 | None:intergenic | 45.0% | |
| GAAGCGATAGCAAGAAACGA+CGG | + | chr1.2:80800052-80800071 | None:intergenic | 45.0% | |
| GGATGTTGTTGAGCTTAGTC+CGG | - | chr1.2:80800168-80800187 | MS.gene44543:intron | 45.0% | |
| GGCAGAAACTGACCTAATTC+CGG | + | chr1.2:80800272-80800291 | None:intergenic | 45.0% | |
| GGTCAGTTTCTGCCTCAATT+TGG | - | chr1.2:80800278-80800297 | MS.gene44543:intron | 45.0% | |
| GTACAGCACCAGTTGACAAA+GGG | + | chr1.2:80802124-80802143 | None:intergenic | 45.0% | |
| GTTGAGCTTAGTCCGGTTAT+GGG | - | chr1.2:80800175-80800194 | MS.gene44543:intron | 45.0% | |
| TCAAACCCATTCCCCATAAC+CGG | + | chr1.2:80800190-80800209 | None:intergenic | 45.0% | |
| TCATTGAAGGAGCTAGAGGA+TGG | - | chr1.2:80802799-80802818 | MS.gene44543:CDS | 45.0% | |
| TCTCCAGTCCAACTATCATC+TGG | + | chr1.2:80801970-80801989 | None:intergenic | 45.0% | |
| TGAGAGATGAAGCAGCTAAC+TGG | + | chr1.2:80803039-80803058 | None:intergenic | 45.0% | |
| TGGTGGGGTTTAGATTGAAG+CGG | + | chr1.2:80799820-80799839 | None:intergenic | 45.0% | |
| TGTTGAGCTTAGTCCGGTTA+TGG | - | chr1.2:80800174-80800193 | MS.gene44543:intron | 45.0% | |
| TTAGTCCGGTTATGGGGAAT+GGG | - | chr1.2:80800182-80800201 | MS.gene44543:intron | 45.0% | |
| TTGAGCTTAGTCCGGTTATG+GGG | - | chr1.2:80800176-80800195 | MS.gene44543:intron | 45.0% | |
| TTGGAAAGGATGTTCCATGG+AGG | - | chr1.2:80802761-80802780 | MS.gene44543:CDS | 45.0% | |
| TTTCAGCCATGGCTGTAAGA+GGG | - | chr1.2:80801357-80801376 | MS.gene44543:intron | 45.0% | |
| ! | AGCCATTCTCTTCAGGTTTC+TGG | + | chr1.2:80801800-80801819 | None:intergenic | 45.0% |
| ! | ATGTTCCATGGAGGAGTATG+AGG | - | chr1.2:80802770-80802789 | MS.gene44543:CDS | 45.0% |
| ! | CGTTGTGTGGGTTGAAGAAA+GGG | - | chr1.2:80800146-80800165 | MS.gene44543:intron | 45.0% |
| ! | GAAGCAGCTAACTGGTTCAT+GGG | + | chr1.2:80803031-80803050 | None:intergenic | 45.0% |
| ! | GATAGTTGGACTGGAGAAAG+TGG | - | chr1.2:80801973-80801992 | MS.gene44543:intron | 45.0% |
| ! | GATGAGGCGGTGTTAATGAA+AGG | + | chr1.2:80799736-80799755 | None:intergenic | 45.0% |
| ! | GGTTGTGAATGTGTCATTGG+TGG | - | chr1.2:80800767-80800786 | MS.gene44543:intron | 45.0% |
| ! | GTTGTGTGGGTTGAAGAAAG+GGG | - | chr1.2:80800147-80800166 | MS.gene44543:intron | 45.0% |
| ! | TGAAGCAGCTAACTGGTTCA+TGG | + | chr1.2:80803032-80803051 | None:intergenic | 45.0% |
| ! | TGTTCCATGGAGGAGTATGA+GGG | - | chr1.2:80802771-80802790 | MS.gene44543:CDS | 45.0% |
| !! | CAACTGGTGCTGTACTTTGT+GGG | - | chr1.2:80802129-80802148 | MS.gene44543:intron | 45.0% |
| !! | TCAACTGGTGCTGTACTTTG+TGG | - | chr1.2:80802128-80802147 | MS.gene44543:intron | 45.0% |
| !! | TGGAGAAAGTGGCTTTGTAC+AGG | - | chr1.2:80801984-80802003 | MS.gene44543:intron | 45.0% |
| AACGTGGAAGAGTGACTCAG+CGG | + | chr1.2:80799939-80799958 | None:intergenic | 50.0% | |
| AACTTGCCCTCTTACAGCCA+TGG | + | chr1.2:80801366-80801385 | None:intergenic | 50.0% | |
| AGAGGGCAAGTTACCTTCCT+TGG | - | chr1.2:80801374-80801393 | MS.gene44543:intron | 50.0% | |
| AGCACCAGTTGACAAAGGGT+TGG | + | chr1.2:80802120-80802139 | None:intergenic | 50.0% | |
| ATAGACAGTCGAGGGGAACT+AGG | - | chr1.2:80800802-80800821 | MS.gene44543:intron | 50.0% | |
| ATCGACCCACCCGAGAAATT+TGG | - | chr1.2:80800220-80800239 | MS.gene44543:intron | 50.0% | |
| CAGGATTTGATGCTGGCAAG+AGG | - | chr1.2:80801749-80801768 | MS.gene44543:intron | 50.0% | |
| CCCTCGACTGTCTATCAGTT+AGG | + | chr1.2:80800797-80800816 | None:intergenic | 50.0% | |
| CCCTCTCATACTTTATGCGG+TGG | + | chr1.2:80802878-80802897 | None:intergenic | 50.0% | |
| CCGAAGCTTGCGATTAAGAG+TGG | - | chr1.2:80800076-80800095 | MS.gene44543:intron | 50.0% | |
| CGTAGGATGGACATGGGAAA+GGG | + | chr1.2:80799797-80799816 | None:intergenic | 50.0% | |
| CTCGCTAGTCCAATTAGACC+AGG | + | chr1.2:80802735-80802754 | None:intergenic | 50.0% | |
| CTCGTATATGCAGCCTGCAA+AGG | + | chr1.2:80802083-80802102 | None:intergenic | 50.0% | |
| CTCTTAATCGCAAGCTTCGG+CGG | + | chr1.2:80800076-80800095 | None:intergenic | 50.0% | |
| CTTAGTCCGGTTATGGGGAA+TGG | - | chr1.2:80800181-80800200 | MS.gene44543:intron | 50.0% | |
| CTTGTCTTTGCCACTGGATC+CGG | - | chr1.2:80800250-80800269 | MS.gene44543:intron | 50.0% | |
| GAAGCTAAGCACAAGGCCAT+AGG | - | chr1.2:80800986-80801005 | MS.gene44543:CDS | 50.0% | |
| GGCCAGAAACCTGAAGAGAA+TGG | - | chr1.2:80801795-80801814 | MS.gene44543:intron | 50.0% | |
| GGCTGCATATACGAGAGCAA+AGG | - | chr1.2:80802088-80802107 | MS.gene44543:intron | 50.0% | |
| GGTCGAGGCAAATTGACATG+TGG | + | chr1.2:80801111-80801130 | None:intergenic | 50.0% | |
| GGTTTAGATTGAAGCGGCGT+AGG | + | chr1.2:80799814-80799833 | None:intergenic | 50.0% | |
| GTAGGATGGACATGGGAAAG+GGG | + | chr1.2:80799796-80799815 | None:intergenic | 50.0% | |
| GTTTCAGCCATGGCTGTAAG+AGG | - | chr1.2:80801356-80801375 | MS.gene44543:intron | 50.0% | |
| TAGATTGAAGCGGCGTAGGA+TGG | + | chr1.2:80799810-80799829 | None:intergenic | 50.0% | |
| TAGGATGGACATGGGAAAGG+GGG | + | chr1.2:80799795-80799814 | None:intergenic | 50.0% | |
| TGACCTAATTCCGGATCCAG+TGG | + | chr1.2:80800263-80800282 | None:intergenic | 50.0% | |
| TGGGCAGAAACAGATGACTG+AGG | - | chr1.2:80802148-80802167 | MS.gene44543:intron | 50.0% | |
| TTGCCACTGGATCCGGAATT+AGG | - | chr1.2:80800257-80800276 | MS.gene44543:intron | 50.0% | |
| ! | GCGTTGTGTGGGTTGAAGAA+AGG | - | chr1.2:80800145-80800164 | MS.gene44543:intron | 50.0% |
| ! | GTGTCCTGGTTTGTGTCAAC+TGG | - | chr1.2:80803064-80803083 | MS.gene44543:CDS | 50.0% |
| ! | TGCCAGTTAAGCTGGCTCTT+GGG | - | chr1.2:80802824-80802843 | MS.gene44543:CDS | 50.0% |
| ! | TTGCCAGTTAAGCTGGCTCT+TGG | - | chr1.2:80802823-80802842 | MS.gene44543:CDS | 50.0% |
| !! | CTGGTCTAATTGGACTAGCG+AGG | - | chr1.2:80802733-80802752 | MS.gene44543:CDS | 50.0% |
| !! | GAACCTACTAGGACTAGCTC+TGG | - | chr1.2:80802297-80802316 | MS.gene44543:intron | 50.0% |
| !! | GGATGGATTGCCAGTTAAGC+TGG | - | chr1.2:80802816-80802835 | MS.gene44543:CDS | 50.0% |
| AAAGGGTTGCGAGTCGGTGA+CGG | + | chr1.2:80799853-80799872 | None:intergenic | 55.0% | |
| AAAGTGCGCATGGGAGTGGA+GGG | + | chr1.2:80799765-80799784 | None:intergenic | 55.0% | |
| AAGCGGCGTAGGATGGACAT+GGG | + | chr1.2:80799803-80799822 | None:intergenic | 55.0% | |
| ACATTGTTGTCACTCGGGCC+TGG | - | chr1.2:80802714-80802733 | MS.gene44543:CDS | 55.0% | |
| AGCACAAGGCCATAGGGAGA+AGG | - | chr1.2:80800993-80801012 | MS.gene44543:CDS | 55.0% | |
| ATGGACATGGGAAAGGGGGT+GGG | + | chr1.2:80799791-80799810 | None:intergenic | 55.0% | |
| CGGAAACGTCGATGGAAACG+TGG | + | chr1.2:80799955-80799974 | None:intergenic | 55.0% | |
| GACGGTGGTGTCTTGACGTA+CGG | + | chr1.2:80799882-80799901 | None:intergenic | 55.0% | |
| GAGTGGAGGGTAAGAGGATG+AGG | + | chr1.2:80799752-80799771 | None:intergenic | 55.0% | |
| GATGCCCTCATACTCCTCCA+TGG | + | chr1.2:80802778-80802797 | None:intergenic | 55.0% | |
| GCGTAGGATGGACATGGGAA+AGG | + | chr1.2:80799798-80799817 | None:intergenic | 55.0% | |
| TAAAGTGCGCATGGGAGTGG+AGG | + | chr1.2:80799766-80799785 | None:intergenic | 55.0% | |
| TACGTCAAGACACCACCGTC+TGG | - | chr1.2:80799882-80799901 | MS.gene44543:intron | 55.0% | |
| TCACTCGGGCCTGGTCTAAT+TGG | - | chr1.2:80802723-80802742 | MS.gene44543:CDS | 55.0% | |
| TGGAGGGTAAGAGGATGAGG+CGG | + | chr1.2:80799749-80799768 | None:intergenic | 55.0% | |
| TGTGAGACGTGGCAAGGTCA+GGG | + | chr1.2:80799982-80800001 | None:intergenic | 55.0% | |
| ! | CCAGTTAAGCTGGCTCTTGG+GGG | - | chr1.2:80802826-80802845 | MS.gene44543:CDS | 55.0% |
| ! | GCCAGTTAAGCTGGCTCTTG+GGG | - | chr1.2:80802825-80802844 | MS.gene44543:CDS | 55.0% |
| !! | CCACTGCAGAAGCGTTGTGT+GGG | - | chr1.2:80800134-80800153 | MS.gene44543:intron | 55.0% |
| !! | TCCACTGCAGAAGCGTTGTG+TGG | - | chr1.2:80800133-80800152 | MS.gene44543:intron | 55.0% |
| !!! | CTAGCGAGGCCGTTTTGGAA+AGG | - | chr1.2:80802747-80802766 | MS.gene44543:CDS | 55.0% |
| !!! | TTGGACTAGCGAGGCCGTTT+TGG | - | chr1.2:80802742-80802761 | MS.gene44543:CDS | 55.0% |
| CCCACACAACGCTTCTGCAG+TGG | + | chr1.2:80800137-80800156 | None:intergenic | 60.0% | |
| CCCCCAAGAGCCAGCTTAAC+TGG | + | chr1.2:80802829-80802848 | None:intergenic | 60.0% | |
| CTCAGCGGCAGGTTCGATCT+CGG | + | chr1.2:80799924-80799943 | None:intergenic | 60.0% | |
| GAAGCGGCGTAGGATGGACA+TGG | + | chr1.2:80799804-80799823 | None:intergenic | 60.0% | |
| GAGAGGAGCTGGAGTCCAGA+CGG | + | chr1.2:80799900-80799919 | None:intergenic | 60.0% | |
| GATGGACATGGGAAAGGGGG+TGG | + | chr1.2:80799792-80799811 | None:intergenic | 60.0% | |
| GCAGGTTCGATCTCGGAGAG+AGG | + | chr1.2:80799917-80799936 | None:intergenic | 60.0% | |
| GCATGGGAGTGGAGGGTAAG+AGG | + | chr1.2:80799758-80799777 | None:intergenic | 60.0% | |
| GGCTAAAGTGCGCATGGGAG+TGG | + | chr1.2:80799769-80799788 | None:intergenic | 60.0% | |
| GGGGGCAGTGGGACAGAAAA+CGG | - | chr1.2:80802844-80802863 | MS.gene44543:CDS | 60.0% | |
| GGTGGGGCTAAAGTGCGCAT+GGG | + | chr1.2:80799774-80799793 | None:intergenic | 60.0% | |
| GGTGGTGTCTTGACGTACGG+CGG | + | chr1.2:80799879-80799898 | None:intergenic | 60.0% | |
| GTGAGACGTGGCAAGGTCAG+GGG | + | chr1.2:80799981-80800000 | None:intergenic | 60.0% | |
| GTGTGAGACGTGGCAAGGTC+AGG | + | chr1.2:80799983-80800002 | None:intergenic | 60.0% | |
| TCGATCTCGGAGAGAGGAGC+TGG | + | chr1.2:80799911-80799930 | None:intergenic | 60.0% | |
| TGACGGAGACGGTGGTTGGT+GGG | + | chr1.2:80799836-80799855 | None:intergenic | 60.0% | |
| TGGAAGAGTGACTCAGCGGC+AGG | + | chr1.2:80799935-80799954 | None:intergenic | 60.0% | |
| TGGACATGGGAAAGGGGGTG+GGG | + | chr1.2:80799790-80799809 | None:intergenic | 60.0% | |
| TTGACGTACGGCGGCGGAAA+GGG | + | chr1.2:80799870-80799889 | None:intergenic | 60.0% | |
| !! | TTGCGAGTCGGTGACGGAGA+CGG | + | chr1.2:80799847-80799866 | None:intergenic | 60.0% |
| AGGAGCTGGAGTCCAGACGG+TGG | + | chr1.2:80799897-80799916 | None:intergenic | 65.0% | |
| CGCGTGTGTGAGACGTGGCA+AGG | + | chr1.2:80799988-80800007 | None:intergenic | 65.0% | |
| CGGCGGAAAGGGTTGCGAGT+CGG | + | chr1.2:80799859-80799878 | None:intergenic | 65.0% | |
| CTTGACGTACGGCGGCGGAA+AGG | + | chr1.2:80799871-80799890 | None:intergenic | 65.0% | |
| GGGTGGGGCTAAAGTGCGCA+TGG | + | chr1.2:80799775-80799794 | None:intergenic | 65.0% | |
| GGTGTCTTGACGTACGGCGG+CGG | + | chr1.2:80799876-80799895 | None:intergenic | 65.0% | |
| ! | AAGCTGGCTCTTGGGGGCAG+TGG | - | chr1.2:80802832-80802851 | MS.gene44543:CDS | 65.0% |
| ! | AGCTGGCTCTTGGGGGCAGT+GGG | - | chr1.2:80802833-80802852 | MS.gene44543:CDS | 65.0% |
| ! | GACGGAGACGGTGGTTGGTG+GGG | + | chr1.2:80799835-80799854 | None:intergenic | 65.0% |
| ! | GTGACGGAGACGGTGGTTGG+TGG | + | chr1.2:80799837-80799856 | None:intergenic | 65.0% |
| !! | AGGGGCGTCGGAAACGTCGA+TGG | + | chr1.2:80799963-80799982 | None:intergenic | 65.0% |
| !! | TCGGTGACGGAGACGGTGGT+TGG | + | chr1.2:80799840-80799859 | None:intergenic | 65.0% |
| ACCGGCGCGTGTGTGAGACG+TGG | + | chr1.2:80799993-80800012 | None:intergenic | 70.0% | |
| GCCACGTCTCACACACGCGC+CGG | - | chr1.2:80799989-80800008 | MS.gene44543:intron | 70.0% | |
| ! | CGTGGCAAGGTCAGGGGCGT+CGG | + | chr1.2:80799975-80799994 | None:intergenic | 70.0% |
| !! | CGAGTCGGTGACGGAGACGG+TGG | + | chr1.2:80799844-80799863 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 80799725 | 80803252 | 80799725 | ID=MS.gene44543 |
| chr1.2 | mRNA | 80799725 | 80803252 | 80799725 | ID=MS.gene44543.t1;Parent=MS.gene44543 |
| chr1.2 | exon | 80802699 | 80803252 | 80802699 | ID=MS.gene44543.t1.exon1;Parent=MS.gene44543.t1 |
| chr1.2 | CDS | 80802699 | 80803252 | 80802699 | ID=cds.MS.gene44543.t1;Parent=MS.gene44543.t1 |
| chr1.2 | exon | 80801152 | 80801251 | 80801152 | ID=MS.gene44543.t1.exon2;Parent=MS.gene44543.t1 |
| chr1.2 | CDS | 80801152 | 80801251 | 80801152 | ID=cds.MS.gene44543.t1;Parent=MS.gene44543.t1 |
| chr1.2 | exon | 80800972 | 80801067 | 80800972 | ID=MS.gene44543.t1.exon3;Parent=MS.gene44543.t1 |
| chr1.2 | CDS | 80800972 | 80801067 | 80800972 | ID=cds.MS.gene44543.t1;Parent=MS.gene44543.t1 |
| chr1.2 | exon | 80800808 | 80800888 | 80800808 | ID=MS.gene44543.t1.exon4;Parent=MS.gene44543.t1 |
| chr1.2 | CDS | 80800808 | 80800888 | 80800808 | ID=cds.MS.gene44543.t1;Parent=MS.gene44543.t1 |
| chr1.2 | exon | 80799725 | 80799787 | 80799725 | ID=MS.gene44543.t1.exon5;Parent=MS.gene44543.t1 |
| chr1.2 | CDS | 80799725 | 80799787 | 80799725 | ID=cds.MS.gene44543.t1;Parent=MS.gene44543.t1 |
| Gene Sequence |
| Protein sequence |
