Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89091.t1 | XP_003597804.1 | 97.8 | 371 | 8 | 0 | 4 | 374 | 60 | 430 | 3.70E-214 | 753.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89091.t1 | Q944I4 | 72.2 | 371 | 99 | 1 | 6 | 372 | 84 | 454 | 4.9e-162 | 572.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89091.t1 | G7IME0 | 97.8 | 371 | 8 | 0 | 4 | 374 | 60 | 430 | 2.7e-214 | 753.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene89091 | 0.860231 | 2.39E-63 | -1.69E-46 |
MS.gene049173 | MS.gene89091 | 0.816452 | 5.49E-52 | -1.69E-46 |
MS.gene049181 | MS.gene89091 | -0.801979 | 6.97E-49 | -1.69E-46 |
MS.gene049217 | MS.gene89091 | 0.806743 | 7.09E-50 | -1.69E-46 |
MS.gene049222 | MS.gene89091 | 0.872539 | 2.94E-67 | -1.69E-46 |
MS.gene049232 | MS.gene89091 | 0.878954 | 1.85E-69 | -1.69E-46 |
MS.gene049285 | MS.gene89091 | 0.893216 | 7.73E-75 | -1.69E-46 |
MS.gene049320 | MS.gene89091 | 0.888013 | 8.60E-73 | -1.69E-46 |
MS.gene049600 | MS.gene89091 | 0.834732 | 2.53E-56 | -1.69E-46 |
MS.gene049609 | MS.gene89091 | 0.822109 | 2.82E-53 | -1.69E-46 |
MS.gene049627 | MS.gene89091 | 0.804182 | 2.44E-49 | -1.69E-46 |
MS.gene049633 | MS.gene89091 | 0.851185 | 1.05E-60 | -1.69E-46 |
MS.gene049865 | MS.gene89091 | 0.818177 | 2.25E-52 | -1.69E-46 |
MS.gene05010 | MS.gene89091 | 0.853971 | 1.68E-61 | -1.69E-46 |
MS.gene050163 | MS.gene89091 | 0.876018 | 1.95E-68 | -1.69E-46 |
MS.gene050165 | MS.gene89091 | 0.886151 | 4.39E-72 | -1.69E-46 |
MS.gene050170 | MS.gene89091 | 0.852219 | 5.33E-61 | -1.69E-46 |
MS.gene050323 | MS.gene89091 | 0.872495 | 3.04E-67 | -1.69E-46 |
MS.gene050333 | MS.gene89091 | 0.876986 | 9.02E-69 | -1.69E-46 |
MS.gene050496 | MS.gene89091 | 0.875467 | 3.01E-68 | -1.69E-46 |
MS.gene050504 | MS.gene89091 | 0.891788 | 2.88E-74 | -1.69E-46 |
MS.gene050518 | MS.gene89091 | 0.91195 | 3.40E-83 | -1.69E-46 |
MS.gene050577 | MS.gene89091 | 0.881683 | 1.96E-70 | -1.69E-46 |
MS.gene050612 | MS.gene89091 | 0.897971 | 8.37E-77 | -1.69E-46 |
MS.gene050662 | MS.gene89091 | 0.802122 | 6.52E-49 | -1.69E-46 |
MS.gene050675 | MS.gene89091 | 0.886416 | 3.49E-72 | -1.69E-46 |
MS.gene050699 | MS.gene89091 | 0.876493 | 1.34E-68 | -1.69E-46 |
MS.gene050747 | MS.gene89091 | 0.815847 | 7.49E-52 | -1.69E-46 |
MS.gene050772 | MS.gene89091 | 0.858331 | 8.87E-63 | -1.69E-46 |
MS.gene05080 | MS.gene89091 | 0.838555 | 2.68E-57 | -1.69E-46 |
MS.gene050868 | MS.gene89091 | 0.837623 | 4.66E-57 | -1.69E-46 |
MS.gene050871 | MS.gene89091 | 0.834024 | 3.81E-56 | -1.69E-46 |
MS.gene050876 | MS.gene89091 | 0.899421 | 2.02E-77 | -1.69E-46 |
MS.gene05087 | MS.gene89091 | 0.813877 | 2.05E-51 | -1.69E-46 |
MS.gene050904 | MS.gene89091 | 0.864826 | 9.19E-65 | -1.69E-46 |
MS.gene050950 | MS.gene89091 | 0.816908 | 4.34E-52 | -1.69E-46 |
MS.gene050986 | MS.gene89091 | 0.881655 | 2.00E-70 | -1.69E-46 |
MS.gene05100 | MS.gene89091 | 0.830369 | 3.05E-55 | -1.69E-46 |
MS.gene051268 | MS.gene89091 | 0.822737 | 2.02E-53 | -1.69E-46 |
MS.gene051317 | MS.gene89091 | 0.861903 | 7.40E-64 | -1.69E-46 |
MS.gene051551 | MS.gene89091 | 0.832031 | 1.19E-55 | -1.69E-46 |
MS.gene051810 | MS.gene89091 | 0.829583 | 4.75E-55 | -1.69E-46 |
MS.gene051949 | MS.gene89091 | 0.845166 | 4.81E-59 | -1.69E-46 |
MS.gene052164 | MS.gene89091 | 0.848558 | 5.68E-60 | -1.69E-46 |
MS.gene052482 | MS.gene89091 | 0.859105 | 5.21E-63 | -1.69E-46 |
MS.gene052486 | MS.gene89091 | 0.865365 | 6.22E-65 | -1.69E-46 |
MS.gene052504 | MS.gene89091 | 0.81491 | 1.21E-51 | -1.69E-46 |
MS.gene052506 | MS.gene89091 | 0.829775 | 4.26E-55 | -1.69E-46 |
MS.gene052822 | MS.gene89091 | 0.85198 | 6.23E-61 | -1.69E-46 |
MS.gene052916 | MS.gene89091 | 0.878627 | 2.41E-69 | -1.69E-46 |
MS.gene052966 | MS.gene89091 | 0.843751 | 1.16E-58 | -1.69E-46 |
MS.gene053203 | MS.gene89091 | 0.849583 | 2.95E-60 | -1.69E-46 |
MS.gene053213 | MS.gene89091 | 0.863355 | 2.64E-64 | -1.69E-46 |
MS.gene053286 | MS.gene89091 | 0.869223 | 3.64E-66 | -1.69E-46 |
MS.gene053574 | MS.gene89091 | 0.848435 | 6.14E-60 | -1.69E-46 |
MS.gene053626 | MS.gene89091 | 0.81489 | 1.22E-51 | -1.69E-46 |
MS.gene053633 | MS.gene89091 | 0.818093 | 2.35E-52 | -1.69E-46 |
MS.gene053824 | MS.gene89091 | 0.813227 | 2.85E-51 | -1.69E-46 |
MS.gene053916 | MS.gene89091 | 0.801682 | 8.02E-49 | -1.69E-46 |
MS.gene054595 | MS.gene89091 | 0.818385 | 2.02E-52 | -1.69E-46 |
MS.gene054600 | MS.gene89091 | 0.831723 | 1.42E-55 | -1.69E-46 |
MS.gene054638 | MS.gene89091 | 0.836977 | 6.82E-57 | -1.69E-46 |
MS.gene054642 | MS.gene89091 | 0.873554 | 1.34E-67 | -1.69E-46 |
MS.gene05470 | MS.gene89091 | 0.85716 | 1.97E-62 | -1.69E-46 |
MS.gene054954 | MS.gene89091 | 0.907919 | 3.01E-81 | -1.69E-46 |
MS.gene055224 | MS.gene89091 | 0.802332 | 5.90E-49 | -1.69E-46 |
MS.gene055251 | MS.gene89091 | -0.813669 | 2.28E-51 | -1.69E-46 |
MS.gene055362 | MS.gene89091 | 0.88142 | 2.44E-70 | -1.69E-46 |
MS.gene055502 | MS.gene89091 | 0.859225 | 4.79E-63 | -1.69E-46 |
MS.gene055577 | MS.gene89091 | 0.863142 | 3.07E-64 | -1.69E-46 |
MS.gene055634 | MS.gene89091 | 0.843686 | 1.20E-58 | -1.69E-46 |
MS.gene055638 | MS.gene89091 | 0.800226 | 1.59E-48 | -1.69E-46 |
MS.gene055722 | MS.gene89091 | 0.819995 | 8.67E-53 | -1.69E-46 |
MS.gene055748 | MS.gene89091 | 0.888719 | 4.60E-73 | -1.69E-46 |
MS.gene055750 | MS.gene89091 | 0.897512 | 1.31E-76 | -1.69E-46 |
MS.gene055751 | MS.gene89091 | 0.907648 | 4.04E-81 | -1.69E-46 |
MS.gene055776 | MS.gene89091 | 0.892139 | 2.09E-74 | -1.69E-46 |
MS.gene055849 | MS.gene89091 | 0.903905 | 2.14E-79 | -1.69E-46 |
MS.gene05589 | MS.gene89091 | 0.859765 | 3.30E-63 | -1.69E-46 |
MS.gene055941 | MS.gene89091 | 0.815434 | 9.26E-52 | -1.69E-46 |
MS.gene056046 | MS.gene89091 | 0.819487 | 1.13E-52 | -1.69E-46 |
MS.gene056374 | MS.gene89091 | 0.821575 | 3.75E-53 | -1.69E-46 |
MS.gene056409 | MS.gene89091 | 0.804914 | 1.72E-49 | -1.69E-46 |
MS.gene056450 | MS.gene89091 | 0.829771 | 4.27E-55 | -1.69E-46 |
MS.gene056504 | MS.gene89091 | 0.890732 | 7.55E-74 | -1.69E-46 |
MS.gene056510 | MS.gene89091 | 0.887499 | 1.35E-72 | -1.69E-46 |
MS.gene056549 | MS.gene89091 | 0.819535 | 1.10E-52 | -1.69E-46 |
MS.gene056610 | MS.gene89091 | 0.818837 | 1.59E-52 | -1.69E-46 |
MS.gene056657 | MS.gene89091 | 0.8888 | 4.28E-73 | -1.69E-46 |
MS.gene056692 | MS.gene89091 | 0.892697 | 1.25E-74 | -1.69E-46 |
MS.gene056898 | MS.gene89091 | 0.804963 | 1.68E-49 | -1.69E-46 |
MS.gene057148 | MS.gene89091 | 0.812673 | 3.77E-51 | -1.69E-46 |
MS.gene057331 | MS.gene89091 | 0.81117 | 8.01E-51 | -1.69E-46 |
MS.gene057416 | MS.gene89091 | 0.812981 | 3.22E-51 | -1.69E-46 |
MS.gene057684 | MS.gene89091 | 0.810206 | 1.29E-50 | -1.69E-46 |
MS.gene057687 | MS.gene89091 | 0.828328 | 9.55E-55 | -1.69E-46 |
MS.gene057775 | MS.gene89091 | 0.805688 | 1.18E-49 | -1.69E-46 |
MS.gene057831 | MS.gene89091 | 0.864641 | 1.05E-64 | -1.69E-46 |
MS.gene057872 | MS.gene89091 | 0.835595 | 1.53E-56 | -1.69E-46 |
MS.gene05787 | MS.gene89091 | 0.806684 | 7.30E-50 | -1.69E-46 |
MS.gene057986 | MS.gene89091 | 0.82534 | 4.95E-54 | -1.69E-46 |
MS.gene058334 | MS.gene89091 | -0.835111 | 2.03E-56 | -1.69E-46 |
MS.gene05837 | MS.gene89091 | 0.815394 | 9.45E-52 | -1.69E-46 |
MS.gene058419 | MS.gene89091 | 0.876387 | 1.45E-68 | -1.69E-46 |
MS.gene058544 | MS.gene89091 | 0.826229 | 3.04E-54 | -1.69E-46 |
MS.gene058719 | MS.gene89091 | 0.855756 | 5.10E-62 | -1.69E-46 |
MS.gene058723 | MS.gene89091 | 0.812277 | 4.60E-51 | -1.69E-46 |
MS.gene058773 | MS.gene89091 | 0.863606 | 2.21E-64 | -1.69E-46 |
MS.gene058838 | MS.gene89091 | 0.829701 | 4.44E-55 | -1.69E-46 |
MS.gene059022 | MS.gene89091 | 0.886308 | 3.83E-72 | -1.69E-46 |
MS.gene059023 | MS.gene89091 | 0.847749 | 9.50E-60 | -1.69E-46 |
MS.gene059026 | MS.gene89091 | 0.814372 | 1.59E-51 | -1.69E-46 |
MS.gene059029 | MS.gene89091 | 0.801332 | 9.47E-49 | -1.69E-46 |
MS.gene059079 | MS.gene89091 | 0.842539 | 2.43E-58 | -1.69E-46 |
MS.gene05912 | MS.gene89091 | 0.808202 | 3.48E-50 | -1.69E-46 |
MS.gene05913 | MS.gene89091 | 0.812833 | 3.47E-51 | -1.69E-46 |
MS.gene059677 | MS.gene89091 | 0.888889 | 3.95E-73 | -1.69E-46 |
MS.gene059718 | MS.gene89091 | 0.863055 | 3.27E-64 | -1.69E-46 |
MS.gene059756 | MS.gene89091 | 0.832386 | 9.74E-56 | -1.69E-46 |
MS.gene059801 | MS.gene89091 | 0.823002 | 1.75E-53 | -1.69E-46 |
MS.gene059837 | MS.gene89091 | 0.876569 | 1.26E-68 | -1.69E-46 |
MS.gene059865 | MS.gene89091 | 0.900437 | 7.33E-78 | -1.69E-46 |
MS.gene06000 | MS.gene89091 | 0.841985 | 3.41E-58 | -1.69E-46 |
MS.gene060526 | MS.gene89091 | 0.812911 | 3.34E-51 | -1.69E-46 |
MS.gene060595 | MS.gene89091 | -0.8097 | 1.66E-50 | -1.69E-46 |
MS.gene060703 | MS.gene89091 | 0.889946 | 1.54E-73 | -1.69E-46 |
MS.gene060762 | MS.gene89091 | 0.88192 | 1.61E-70 | -1.69E-46 |
MS.gene060778 | MS.gene89091 | 0.841883 | 3.63E-58 | -1.69E-46 |
MS.gene06077 | MS.gene89091 | 0.880986 | 3.49E-70 | -1.69E-46 |
MS.gene060823 | MS.gene89091 | -0.813024 | 3.16E-51 | -1.69E-46 |
MS.gene060982 | MS.gene89091 | 0.90392 | 2.11E-79 | -1.69E-46 |
MS.gene061150 | MS.gene89091 | 0.857293 | 1.80E-62 | -1.69E-46 |
MS.gene061171 | MS.gene89091 | 0.800059 | 1.72E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89091.t1 | MTR_2g102510 | 97.844 | 371 | 8 | 0 | 4 | 374 | 60 | 430 | 0.0 | 758 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89091.t1 | AT1G80380 | 72.312 | 372 | 99 | 2 | 6 | 373 | 84 | 455 | 0.0 | 573 |
MS.gene89091.t1 | AT1G80380 | 76.081 | 347 | 82 | 1 | 28 | 373 | 17 | 363 | 0.0 | 570 |
MS.gene89091.t1 | AT1G80380 | 71.237 | 372 | 97 | 3 | 6 | 373 | 84 | 449 | 0.0 | 557 |
MS.gene89091.t1 | AT1G80380 | 71.196 | 368 | 80 | 1 | 32 | 373 | 22 | 389 | 0.0 | 554 |
MS.gene89091.t1 | AT1G80380 | 75.828 | 302 | 72 | 1 | 28 | 328 | 17 | 318 | 8.62e-178 | 497 |
MS.gene89091.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 7.62e-168 | 472 |
MS.gene89091.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 7.62e-168 | 472 |
MS.gene89091.t1 | AT1G80380 | 78.846 | 156 | 33 | 0 | 218 | 373 | 206 | 361 | 1.56e-88 | 271 |
MS.gene89091.t1 | AT1G80380 | 58.871 | 124 | 47 | 2 | 6 | 125 | 84 | 207 | 5.61e-43 | 153 |
Find 88 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACCTTCTTTAGACATTT+TGG | 0.130732 | 2.4:-2559565 | None:intergenic |
GGACCTTTGCTTGACAAAAT+TGG | 0.212489 | 2.4:+2558690 | MS.gene89091:CDS |
ATCTTCTTTATCTTTGAATT+TGG | 0.228934 | 2.4:-2558889 | None:intergenic |
ATGGATAGTCATTAAGATTA+AGG | 0.292516 | 2.4:+2560653 | MS.gene89091:CDS |
TGTCTACCAGTGGCGCTTGC+AGG | 0.297010 | 2.4:+2560686 | MS.gene89091:CDS |
TGGTATTTGCAGTCTGCTTT+TGG | 0.299436 | 2.4:+2559767 | MS.gene89091:intron |
GTCAAAGTTTCAACAGAAAA+AGG | 0.300184 | 2.4:-2559534 | None:intergenic |
GCCCTTACTTTATCATATCT+TGG | 0.308071 | 2.4:-2559679 | None:intergenic |
ATAGACTCGGCCACCTTCTC+TGG | 0.337691 | 2.4:-2558720 | None:intergenic |
ACCTCAAGAAGTGCATTTCC+TGG | 0.345610 | 2.4:-2559394 | None:intergenic |
TTTCAGTTTCGTGGAAATGC+TGG | 0.359030 | 2.4:+2559498 | MS.gene89091:intron |
CTTTCACACCAGAGGAAAAC+TGG | 0.363924 | 2.4:-2558846 | None:intergenic |
AAGCATACCTGCCAATCATT+TGG | 0.371676 | 2.4:-2559103 | None:intergenic |
ATGAGGGAGGCAGGCAATCC+TGG | 0.392865 | 2.4:+2560811 | MS.gene89091:CDS |
AGGTTGTGTTGTTTGAAGGC+TGG | 0.409447 | 2.4:+2560349 | MS.gene89091:intron |
CTGTATGAATTTATTTGCTC+AGG | 0.412090 | 2.4:+2558669 | MS.gene89091:CDS |
CTGCAGGCAATGGAAGTTCA+TGG | 0.434578 | 2.4:+2558547 | MS.gene89091:intron |
AAATAAATTCATACAGATCT+TGG | 0.440314 | 2.4:-2558662 | None:intergenic |
AGAAGATATACCTCCTTTAG+TGG | 0.455478 | 2.4:+2558905 | MS.gene89091:CDS |
ATATCTTGGTAACTTCATCT+TGG | 0.462952 | 2.4:-2559665 | None:intergenic |
AAGTGAGATTGCTCAGCATC+AGG | 0.463907 | 2.4:+2558866 | MS.gene89091:CDS |
TTGTTTGAAGGCTGGATGCT+TGG | 0.477539 | 2.4:+2560357 | MS.gene89091:CDS |
GAAGGAAATACTGAATATAC+AGG | 0.480015 | 2.4:-2558615 | None:intergenic |
CGCCACTGGTAGACACAGCT+TGG | 0.482173 | 2.4:-2560678 | None:intergenic |
TTATTTGACGGCTGAAGGCC+AGG | 0.485153 | 2.4:+2559257 | MS.gene89091:CDS |
TCGACATGGCCTGAAATTGA+AGG | 0.485478 | 2.4:+2559815 | MS.gene89091:CDS |
TTCAGTTTCGTGGAAATGCT+GGG | 0.491917 | 2.4:+2559499 | MS.gene89091:intron |
GATCTTGGACAGATGAAACT+TGG | 0.496573 | 2.4:-2558647 | None:intergenic |
GAAACTTGGGCAGGTGATGA+AGG | 0.496749 | 2.4:-2558633 | None:intergenic |
ATAGATAAGTGGTTGTCGTA+TGG | 0.496942 | 2.4:+2558741 | MS.gene89091:CDS |
ATTAAGTTTACCTTGATCCA+TGG | 0.498934 | 2.4:-2556670 | None:intergenic |
ACCTGCCAATCATTTGGAAA+AGG | 0.500879 | 2.4:-2559097 | None:intergenic |
CGATGTTTAGTAGATGTTGA+GGG | 0.501714 | 2.4:-2561008 | None:intergenic |
AAGCTACCTGCAAGCGCCAC+TGG | 0.502593 | 2.4:-2560692 | None:intergenic |
GAAATTGCTATGAGGGAGGC+AGG | 0.507235 | 2.4:+2560802 | MS.gene89091:CDS |
TAGATAAGTGGTTGTCGTAT+GGG | 0.507325 | 2.4:+2558742 | MS.gene89091:CDS |
AAACTAAGAGAAGCTAATCC+AGG | 0.512975 | 2.4:+2559376 | MS.gene89091:CDS |
ACGCATCATAATACGCTTCG+AGG | 0.515071 | 2.4:-2560611 | None:intergenic |
TACTCAATCACCATGGATCA+AGG | 0.515168 | 2.4:+2556660 | None:intergenic |
TTTACAGCTTCAACTGGAAG+GGG | 0.517837 | 2.4:-2560387 | None:intergenic |
TTAACCAAAATGTCTAAAGA+AGG | 0.530262 | 2.4:+2559561 | MS.gene89091:CDS |
ACATCGAAATAGATGAAAAG+AGG | 0.534926 | 2.4:+2561025 | MS.gene89091:CDS |
TGCAGGCTGAAATTGCTATG+AGG | 0.535129 | 2.4:+2560794 | MS.gene89091:intron |
TGTAAAAGCTGTTGATCCCC+AGG | 0.536739 | 2.4:+2560404 | MS.gene89091:CDS |
GAAAAGAGGAACCCTATCCT+AGG | 0.538998 | 2.4:+2561039 | MS.gene89091:CDS |
TGAAACTAGACACCTAGGAT+AGG | 0.545011 | 2.4:-2561051 | None:intergenic |
AAAGACTCTCTTACAGTAAG+GGG | 0.546340 | 2.4:-2559839 | None:intergenic |
GCCACTGGTAGACACAGCTT+GGG | 0.546585 | 2.4:-2560677 | None:intergenic |
AAAAGACTCTCTTACAGTAA+GGG | 0.546930 | 2.4:-2559840 | None:intergenic |
ACCTCATCATCAGACATTCC+AGG | 0.554754 | 2.4:-2560829 | None:intergenic |
ACATATGTATATACCACTAA+AGG | 0.555644 | 2.4:-2558918 | None:intergenic |
GCAGGCTGAAATTGCTATGA+GGG | 0.558189 | 2.4:+2560795 | MS.gene89091:intron |
TCCAGGAAATGCACTTCTTG+AGG | 0.561074 | 2.4:+2559393 | MS.gene89091:CDS |
TTTAGTGCTCCTCAAGGCTG+TGG | 0.562339 | 2.4:+2559044 | MS.gene89091:CDS |
TCGATGTTTAGTAGATGTTG+AGG | 0.562348 | 2.4:-2561009 | None:intergenic |
GGAAGGTATGCATTGTATGC+TGG | 0.567246 | 2.4:-2560952 | None:intergenic |
GTGCTCAATGCTGTCAGCAG+TGG | 0.571141 | 2.4:-2558583 | None:intergenic |
TCAATTTCAGGCCATGTCGA+AGG | 0.574554 | 2.4:-2559812 | None:intergenic |
CAACCACTTATCTATAGACT+CGG | 0.575289 | 2.4:-2558733 | None:intergenic |
ATACCTTCCAACTCTTTACT+CGG | 0.582923 | 2.4:+2560966 | MS.gene89091:CDS |
TGGACAGATGAAACTTGGGC+AGG | 0.585302 | 2.4:-2558642 | None:intergenic |
CTTCCAACTCTTTACTCGGA+GGG | 0.585681 | 2.4:+2560970 | MS.gene89091:CDS |
TGACAGCATTGAGCACAAGA+AGG | 0.586817 | 2.4:+2558590 | MS.gene89091:CDS |
ATCTTGGACAGATGAAACTT+GGG | 0.587689 | 2.4:-2558646 | None:intergenic |
GGACCCTCCGAGTAAAGAGT+TGG | 0.588226 | 2.4:-2560973 | None:intergenic |
GACAGCATTGAGCACAAGAA+GGG | 0.589237 | 2.4:+2558591 | MS.gene89091:CDS |
GGTATGCATTGTATGCTGGC+AGG | 0.592576 | 2.4:-2560948 | None:intergenic |
GGGACAAATATATACAGTCA+TGG | 0.595095 | 2.4:+2560634 | MS.gene89091:CDS |
GAAACTAGACACCTAGGATA+GGG | 0.596635 | 2.4:-2561050 | None:intergenic |
TCGAAGCGTATTATGATGCG+TGG | 0.599075 | 2.4:+2560613 | MS.gene89091:CDS |
TGGCCGAGTCTATAGATAAG+TGG | 0.602394 | 2.4:+2558730 | MS.gene89091:CDS |
TGTTGAGGGTCTGATCCACT+TGG | 0.603157 | 2.4:-2560994 | None:intergenic |
TCCTGGAATGTCTGATGATG+AGG | 0.616904 | 2.4:+2560828 | MS.gene89091:CDS |
GGAAGTCAAGAGCAAAGACG+AGG | 0.621761 | 2.4:-2559076 | None:intergenic |
TATGTATATACCACTAAAGG+AGG | 0.625853 | 2.4:-2558915 | None:intergenic |
GTCGTCTTTCCACAGCCTTG+AGG | 0.635164 | 2.4:-2559053 | None:intergenic |
TCTTGTGAAACTAGACACCT+AGG | 0.639557 | 2.4:-2561056 | None:intergenic |
GGCTGAAATTGCTATGAGGG+AGG | 0.647453 | 2.4:+2560798 | MS.gene89091:intron |
ATCGTGCTGATCCTTCGACA+TGG | 0.652153 | 2.4:+2559801 | MS.gene89091:CDS |
ATTGGATTTAGTGCTCCTCA+AGG | 0.652405 | 2.4:+2559038 | MS.gene89091:CDS |
ACCCAAGCTGTGTCTACCAG+TGG | 0.657739 | 2.4:+2560676 | MS.gene89091:CDS |
CAATCTCACTTTCACACCAG+AGG | 0.660888 | 2.4:-2558854 | None:intergenic |
CCTCCGAGTAAAGAGTTGGA+AGG | 0.667200 | 2.4:-2560969 | None:intergenic |
CCTTCCAACTCTTTACTCGG+AGG | 0.667853 | 2.4:+2560969 | MS.gene89091:CDS |
GAAGTCAAGAGCAAAGACGA+GGG | 0.668490 | 2.4:-2559075 | None:intergenic |
CGAAGCGTATTATGATGCGT+GGG | 0.672756 | 2.4:+2560614 | MS.gene89091:CDS |
CTTTACTCGGAGGGTCCAAG+TGG | 0.674564 | 2.4:+2560979 | MS.gene89091:CDS |
AAGACTCTCTTACAGTAAGG+GGG | 0.686782 | 2.4:-2559838 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTATAAAGAAATAATAAA+CGG | + | chr2.4:2560554-2560573 | MS.gene89091:intron | 10.0% |
!!! | ATTGTTTTAACTATAAAAAT+AGG | - | chr2.4:2560072-2560091 | None:intergenic | 10.0% |
!!! | TCTAATATATTTTTATCAAT+TGG | + | chr2.4:2559296-2559315 | MS.gene89091:intron | 10.0% |
!! | ATATGAATTTGAATTAACTA+AGG | - | chr2.4:2557482-2557501 | None:intergenic | 15.0% |
!! | CTTAAAATACAAGATAATAA+AGG | - | chr2.4:2559613-2559632 | None:intergenic | 15.0% |
!! | TAACTATAAAAATAGGATTT+GGG | - | chr2.4:2560065-2560084 | None:intergenic | 15.0% |
!! | TTAACTATAAAAATAGGATT+TGG | - | chr2.4:2560066-2560085 | None:intergenic | 15.0% |
!! | TTAACTGTAAATATAACTTT+AGG | + | chr2.4:2558957-2558976 | MS.gene89091:intron | 15.0% |
!!! | ATATTAGTTTTTACTTAGAT+AGG | + | chr2.4:2557555-2557574 | MS.gene89091:intron | 15.0% |
!!! | ATGTATTATTCTATTTTTTC+TGG | + | chr2.4:2557129-2557148 | MS.gene89091:intron | 15.0% |
!!! | CTTTTTTTTTTTATAAGTTG+AGG | + | chr2.4:2560510-2560529 | MS.gene89091:intron | 15.0% |
!!! | TATTGATGATTTTTATTTGA+CGG | + | chr2.4:2559245-2559264 | MS.gene89091:CDS | 15.0% |
!! | AAAATACAAATTAGTTCATC+AGG | - | chr2.4:2557506-2557525 | None:intergenic | 20.0% |
!! | AAATAAATTCATACAGATCT+TGG | - | chr2.4:2558665-2558684 | None:intergenic | 20.0% |
!! | AACTATAAAAATAGGATTTG+GGG | - | chr2.4:2560064-2560083 | None:intergenic | 20.0% |
!! | AGTTAGCAATCATATTATAT+AGG | + | chr2.4:2558404-2558423 | MS.gene89091:intron | 20.0% |
!! | ATCTTCTTTATCTTTGAATT+TGG | - | chr2.4:2558892-2558911 | None:intergenic | 20.0% |
!! | ATGTATAGATAGAATAGAAT+AGG | + | chr2.4:2557071-2557090 | MS.gene89091:intron | 20.0% |
!! | CAAATTCAAGAATGTTTAAA+TGG | - | chr2.4:2559724-2559743 | None:intergenic | 20.0% |
!! | GTTATAAATAGTTAGAAGTT+TGG | + | chr2.4:2556937-2556956 | MS.gene89091:intron | 20.0% |
!! | GTTCCTAAATTATACTTAAT+TGG | - | chr2.4:2559445-2559464 | None:intergenic | 20.0% |
!! | TATTCTTGCCATAAAAAAAT+TGG | + | chr2.4:2560250-2560269 | MS.gene89091:intron | 20.0% |
!! | TTTACTAAGCTACTTAAATA+TGG | - | chr2.4:2560130-2560149 | None:intergenic | 20.0% |
!!! | ATATAACTTTAGGATTTGTA+AGG | + | chr2.4:2558967-2558986 | MS.gene89091:intron | 20.0% |
!!! | GCTTTGTTATTAAAATACAA+TGG | + | chr2.4:2556725-2556744 | MS.gene89091:intron | 20.0% |
!!! | TACATTCGATTTTCTATTAT+TGG | + | chr2.4:2557924-2557943 | MS.gene89091:intron | 20.0% |
!!! | TATTGTGTGTTAAAATTTTC+AGG | + | chr2.4:2559205-2559224 | MS.gene89091:intron | 20.0% |
!!! | TATTTTTATTTGAAGTATCC+AGG | + | chr2.4:2559640-2559659 | MS.gene89091:intron | 20.0% |
!!! | TTTTACTTAGATAGGTTAAA+AGG | + | chr2.4:2557563-2557582 | MS.gene89091:intron | 20.0% |
!!! | TTTTTTATAAGTTGAGGAAT+TGG | + | chr2.4:2560516-2560535 | MS.gene89091:intron | 20.0% |
! | AAAGAAGATGAAATTGTTGT+AGG | - | chr2.4:2557315-2557334 | None:intergenic | 25.0% |
! | AAGAAGATGAAATTGTTGTA+GGG | - | chr2.4:2557314-2557333 | None:intergenic | 25.0% |
! | ACATATGTATATACCACTAA+AGG | - | chr2.4:2558921-2558940 | None:intergenic | 25.0% |
! | ACCAAGATATGATAAAGTAA+GGG | + | chr2.4:2559678-2559697 | MS.gene89091:intron | 25.0% |
! | ATGAATTATAGTTAACTTCG+AGG | + | chr2.4:2557819-2557838 | MS.gene89091:intron | 25.0% |
! | GTAAGGAAAAATATGTTCAA+GGG | + | chr2.4:2558984-2559003 | MS.gene89091:intron | 25.0% |
! | TACAAAATGAAAAAACGATG+AGG | - | chr2.4:2559010-2559029 | None:intergenic | 25.0% |
! | TACCAAGATATGATAAAGTA+AGG | + | chr2.4:2559677-2559696 | MS.gene89091:intron | 25.0% |
! | TGAATTATAGTTAACTTCGA+GGG | + | chr2.4:2557820-2557839 | MS.gene89091:intron | 25.0% |
! | TGGCCAATTAAGTATAATTT+AGG | + | chr2.4:2559439-2559458 | MS.gene89091:intron | 25.0% |
! | TGGTAGAAAATTCTTATGTT+TGG | + | chr2.4:2557688-2557707 | MS.gene89091:intron | 25.0% |
! | TGTAAGGAAAAATATGTTCA+AGG | + | chr2.4:2558983-2559002 | MS.gene89091:intron | 25.0% |
! | TTAAAATACAATGGTAGACA+TGG | + | chr2.4:2556734-2556753 | MS.gene89091:intron | 25.0% |
! | TTAACCAAAATGTCTAAAGA+AGG | + | chr2.4:2559561-2559580 | MS.gene89091:CDS | 25.0% |
! | TTACAGTTAAAGCTTATTGA+AGG | - | chr2.4:2558947-2558966 | None:intergenic | 25.0% |
!! | AATTTTCTACCAAGTTAACA+AGG | - | chr2.4:2557680-2557699 | None:intergenic | 25.0% |
!! | GAATCATAGATCAGTTTTTA+TGG | + | chr2.4:2556703-2556722 | MS.gene89091:intron | 25.0% |
!! | TACATGTTGTATTTTGTGTA+TGG | - | chr2.4:2557056-2557075 | None:intergenic | 25.0% |
!! | TCTGAAATGTTAAGTTCAAT+TGG | + | chr2.4:2559884-2559903 | MS.gene89091:intron | 25.0% |
!!! | GTAAAGGACCAATTTTTTTA+TGG | - | chr2.4:2560261-2560280 | None:intergenic | 25.0% |
!!! | TCAGCTGTTTTTAACTTATT+TGG | + | chr2.4:2559980-2559999 | MS.gene89091:intron | 25.0% |
!!! | TGTACGTTTTAGTTTTCATA+TGG | - | chr2.4:2556981-2557000 | None:intergenic | 25.0% |
AAAAGACTCTCTTACAGTAA+GGG | - | chr2.4:2559843-2559862 | None:intergenic | 30.0% | |
AAGGAATAGAGCTGATATAT+TGG | + | chr2.4:2556905-2556924 | MS.gene89091:intron | 30.0% | |
AATTACAAAGTTTGTGATCC+TGG | + | chr2.4:2560736-2560755 | MS.gene89091:intron | 30.0% | |
ACATCGAAATAGATGAAAAG+AGG | + | chr2.4:2561025-2561044 | MS.gene89091:CDS | 30.0% | |
ATAAGTTAAAAACAGCTGAG+AGG | - | chr2.4:2559979-2559998 | None:intergenic | 30.0% | |
ATTAGATAGCTTAGAAAGTG+TGG | - | chr2.4:2557415-2557434 | None:intergenic | 30.0% | |
ATTTCAGCCTGCAATTTAAA+TGG | - | chr2.4:2560787-2560806 | None:intergenic | 30.0% | |
CGAAAGAAAAAGAACAAGTT+GGG | - | chr2.4:2559326-2559345 | None:intergenic | 30.0% | |
CTAGCTAATAATAAATTGCC+TGG | + | chr2.4:2559747-2559766 | MS.gene89091:intron | 30.0% | |
CTGTATGAATTTATTTGCTC+AGG | + | chr2.4:2558669-2558688 | MS.gene89091:CDS | 30.0% | |
CTTTCTATTCTGTTGGAATT+AGG | + | chr2.4:2558258-2558277 | MS.gene89091:intron | 30.0% | |
GAAGGAAATACTGAATATAC+AGG | - | chr2.4:2558618-2558637 | None:intergenic | 30.0% | |
GTCAAAGTTTCAACAGAAAA+AGG | - | chr2.4:2559537-2559556 | None:intergenic | 30.0% | |
GTGTTTATTTGAGTATGTGT+TGG | - | chr2.4:2558299-2558318 | None:intergenic | 30.0% | |
TAAAAGACTCTCTTACAGTA+AGG | - | chr2.4:2559844-2559863 | None:intergenic | 30.0% | |
TAATTTACTGATCCTAACCT+GGG | - | chr2.4:2560424-2560443 | None:intergenic | 30.0% | |
TACTCAAATAAACACAGACA+CGG | + | chr2.4:2558304-2558323 | MS.gene89091:intron | 30.0% | |
TATGTATATACCACTAAAGG+AGG | - | chr2.4:2558918-2558937 | None:intergenic | 30.0% | |
TCGAAAGAAAAAGAACAAGT+TGG | - | chr2.4:2559327-2559346 | None:intergenic | 30.0% | |
TTACACAGATATATGAGAAG+TGG | + | chr2.4:2559419-2559438 | MS.gene89091:intron | 30.0% | |
TTCAAATTCCTCAAGATAGT+TGG | + | chr2.4:2560216-2560235 | MS.gene89091:intron | 30.0% | |
TTCTGTTGGAATTAGGAAAT+TGG | + | chr2.4:2558265-2558284 | MS.gene89091:intron | 30.0% | |
TTTATCTAAACCACTTCATG+TGG | + | chr2.4:2560021-2560040 | MS.gene89091:intron | 30.0% | |
! | AAACCAATTTTGTCAAGCAA+AGG | - | chr2.4:2558696-2558715 | None:intergenic | 30.0% |
! | ATATCTTGGTAACTTCATCT+TGG | - | chr2.4:2559668-2559687 | None:intergenic | 30.0% |
! | ATCACCTTCTTTAGACATTT+TGG | - | chr2.4:2559568-2559587 | None:intergenic | 30.0% |
! | GACATTTTATATGGAATCTC+AGG | - | chr2.4:2558348-2558367 | None:intergenic | 30.0% |
! | GGTTTTTGCCTAATACAAAA+GGG | + | chr2.4:2556755-2556774 | MS.gene89091:intron | 30.0% |
! | GTTTTTGCCTAATACAAAAG+GGG | + | chr2.4:2556756-2556775 | MS.gene89091:intron | 30.0% |
! | TCATTTTGTATGACTCAGAT+TGG | + | chr2.4:2559020-2559039 | MS.gene89091:intron | 30.0% |
! | TGATAAAGCCTAACTTTTTG+AGG | - | chr2.4:2558816-2558835 | None:intergenic | 30.0% |
! | TGGTTTTTGCCTAATACAAA+AGG | + | chr2.4:2556754-2556773 | MS.gene89091:intron | 30.0% |
! | TTAGATAGCTTAGAAAGTGT+GGG | - | chr2.4:2557414-2557433 | None:intergenic | 30.0% |
!!! | TTTTAGGTTGTGTTGTTTGA+AGG | + | chr2.4:2560345-2560364 | MS.gene89091:intron | 30.0% |
!!! | TTTTTTTCCTTTCAGTTTCG+TGG | + | chr2.4:2559489-2559508 | MS.gene89091:intron | 30.0% |
AAACTAAGAGAAGCTAATCC+AGG | + | chr2.4:2559376-2559395 | MS.gene89091:CDS | 35.0% | |
AAAGACTCTCTTACAGTAAG+GGG | - | chr2.4:2559842-2559861 | None:intergenic | 35.0% | |
AACCTCAAACCAAATGTTTC+AGG | - | chr2.4:2557764-2557783 | None:intergenic | 35.0% | |
AACGATGTCTCTTCTATGAA+TGG | + | chr2.4:2556779-2556798 | MS.gene89091:intron | 35.0% | |
AAGAATAGGCAAAGATTACG+TGG | + | chr2.4:2557186-2557205 | MS.gene89091:intron | 35.0% | |
AATTCCGCAACATAAACACA+AGG | - | chr2.4:2560469-2560488 | None:intergenic | 35.0% | |
AATTTACTGATCCTAACCTG+GGG | - | chr2.4:2560423-2560442 | None:intergenic | 35.0% | |
ACAATTACAATACTTCCTGC+AGG | + | chr2.4:2558531-2558550 | MS.gene89091:intron | 35.0% | |
ACCTCAAACCAAATGTTTCA+GGG | - | chr2.4:2557763-2557782 | None:intergenic | 35.0% | |
ACTCAAATAAACACAGACAC+GGG | + | chr2.4:2558305-2558324 | MS.gene89091:intron | 35.0% | |
AGAAAAGAGAGACACAAACA+TGG | + | chr2.4:2557257-2557276 | MS.gene89091:intron | 35.0% | |
AGAAGATATACCTCCTTTAG+TGG | + | chr2.4:2558905-2558924 | MS.gene89091:CDS | 35.0% | |
AGCTCTATTCCTTTCAGAAT+CGG | - | chr2.4:2556898-2556917 | None:intergenic | 35.0% | |
ATACCTTCCAACTCTTTACT+CGG | + | chr2.4:2560966-2560985 | MS.gene89091:CDS | 35.0% | |
ATAGATAAGTGGTTGTCGTA+TGG | + | chr2.4:2558741-2558760 | MS.gene89091:CDS | 35.0% | |
ATCTTGGACAGATGAAACTT+GGG | - | chr2.4:2558649-2558668 | None:intergenic | 35.0% | |
CAACAGAAAAAGGAAGATCA+TGG | - | chr2.4:2559527-2559546 | None:intergenic | 35.0% | |
CAACCACTTATCTATAGACT+CGG | - | chr2.4:2558736-2558755 | None:intergenic | 35.0% | |
CAGAACACTTTCTATTCTGT+TGG | + | chr2.4:2558251-2558270 | MS.gene89091:intron | 35.0% | |
CGATGTTTAGTAGATGTTGA+GGG | - | chr2.4:2561011-2561030 | None:intergenic | 35.0% | |
CTACATTACCAACTATCTTG+AGG | - | chr2.4:2560227-2560246 | None:intergenic | 35.0% | |
GATGAATATCCTAATGCTCA+CGG | - | chr2.4:2557870-2557889 | None:intergenic | 35.0% | |
GCCCTTACTTTATCATATCT+TGG | - | chr2.4:2559682-2559701 | None:intergenic | 35.0% | |
GGGACAAATATATACAGTCA+TGG | + | chr2.4:2560634-2560653 | MS.gene89091:CDS | 35.0% | |
GTAATTTACTGATCCTAACC+TGG | - | chr2.4:2560425-2560444 | None:intergenic | 35.0% | |
TACACCTTGTGTTTATGTTG+CGG | + | chr2.4:2560462-2560481 | MS.gene89091:intron | 35.0% | |
TAGATAAGTGGTTGTCGTAT+GGG | + | chr2.4:2558742-2558761 | MS.gene89091:CDS | 35.0% | |
TATATACTCAGACGAGGTAA+AGG | - | chr2.4:2560277-2560296 | None:intergenic | 35.0% | |
TATGGATATGCACATTGAAG+AGG | - | chr2.4:2560112-2560131 | None:intergenic | 35.0% | |
TCGATGTTTAGTAGATGTTG+AGG | - | chr2.4:2561012-2561031 | None:intergenic | 35.0% | |
TGCAACAAAAAAGTCAGCAA+AGG | - | chr2.4:2557222-2557241 | None:intergenic | 35.0% | |
TGTCAAAATCTTGCAATGAG+TGG | - | chr2.4:2558104-2558123 | None:intergenic | 35.0% | |
! | ACTATATACCAGTTTTCCTC+TGG | + | chr2.4:2558838-2558857 | MS.gene89091:CDS | 35.0% |
! | ATTAGTCTCTGTAGGAGTTT+GGG | + | chr2.4:2557843-2557862 | MS.gene89091:intron | 35.0% |
! | CAAGCACGAATGATACTTTT+AGG | + | chr2.4:2560329-2560348 | MS.gene89091:intron | 35.0% |
! | GAAAACAGCTTTTGTATACC+TGG | - | chr2.4:2559278-2559297 | None:intergenic | 35.0% |
! | GAAGCTATGTTTTCGTACTT+AGG | + | chr2.4:2557736-2557755 | MS.gene89091:intron | 35.0% |
! | GACTTCCTTTTCCAAATGAT+TGG | + | chr2.4:2559092-2559111 | MS.gene89091:CDS | 35.0% |
! | GGGCATGAATTTGCATATTT+TGG | + | chr2.4:2559698-2559717 | MS.gene89091:intron | 35.0% |
! | GGTTTGAGGTTTAATCTTGT+CGG | + | chr2.4:2557773-2557792 | MS.gene89091:intron | 35.0% |
! | GTTTGAGGTTTAATCTTGTC+GGG | + | chr2.4:2557774-2557793 | MS.gene89091:intron | 35.0% |
! | TAGATAGCTTAGAAAGTGTG+GGG | - | chr2.4:2557413-2557432 | None:intergenic | 35.0% |
! | TGAAAGTATATACTCAGACG+AGG | - | chr2.4:2560283-2560302 | None:intergenic | 35.0% |
! | TTAAAGGTTCTGATTGAGGA+GGG | - | chr2.4:2558190-2558209 | None:intergenic | 35.0% |
! | TTTTACAGCTTCAACTGGAA+GGG | - | chr2.4:2560391-2560410 | None:intergenic | 35.0% |
!! | CATTGTGCCATTTAAATTGC+AGG | + | chr2.4:2560777-2560796 | MS.gene89091:intron | 35.0% |
!! | GATTTTTATTTGACGGCTGA+AGG | + | chr2.4:2559252-2559271 | MS.gene89091:CDS | 35.0% |
!!! | AGTTTTAGGCCTTGTTAACT+TGG | + | chr2.4:2557668-2557687 | MS.gene89091:intron | 35.0% |
!!! | GTCTCTCTGAGATAAGTTTT+AGG | + | chr2.4:2557654-2557673 | MS.gene89091:intron | 35.0% |
!!! | TTTTTTCTGGTGCAAATCTG+TGG | + | chr2.4:2557142-2557161 | MS.gene89091:intron | 35.0% |
AAAAGCAGACTGCAAATACC+AGG | - | chr2.4:2559768-2559787 | None:intergenic | 40.0% | |
AAGACTCTCTTACAGTAAGG+GGG | - | chr2.4:2559841-2559860 | None:intergenic | 40.0% | |
AAGCATACCTGCCAATCATT+TGG | - | chr2.4:2559106-2559125 | None:intergenic | 40.0% | |
AATAGGCAAAGATTACGTGG+CGG | + | chr2.4:2557189-2557208 | MS.gene89091:intron | 40.0% | |
ACCTGCCAATCATTTGGAAA+AGG | - | chr2.4:2559100-2559119 | None:intergenic | 40.0% | |
ACTTAGGTCCCTGAAACATT+TGG | + | chr2.4:2557752-2557771 | MS.gene89091:intron | 40.0% | |
AGAATAAGCTCCACATGAAG+TGG | - | chr2.4:2560034-2560053 | None:intergenic | 40.0% | |
AGCATTTCCACGAAACTGAA+AGG | - | chr2.4:2559499-2559518 | None:intergenic | 40.0% | |
ATCCTCTTATGAATGCAGTG+CGG | + | chr2.4:2558447-2558466 | MS.gene89091:intron | 40.0% | |
ATGTACCTGACTTAGAGAAG+TGG | - | chr2.4:2557449-2557468 | None:intergenic | 40.0% | |
ATTGGATTTAGTGCTCCTCA+AGG | + | chr2.4:2559038-2559057 | MS.gene89091:CDS | 40.0% | |
CATGCATAGATGTTACAACC+AGG | - | chr2.4:2560757-2560776 | None:intergenic | 40.0% | |
CTCAAATAAACACAGACACG+GGG | + | chr2.4:2558306-2558325 | MS.gene89091:intron | 40.0% | |
CTCCTCAATCAGAACCTTTA+AGG | + | chr2.4:2558189-2558208 | MS.gene89091:intron | 40.0% | |
CTTTCAGAATCGGAGGTTAA+CGG | - | chr2.4:2556888-2556907 | None:intergenic | 40.0% | |
GAAATTGTTGTAGGGTGCAA+TGG | - | chr2.4:2557306-2557325 | None:intergenic | 40.0% | |
GATCTTGGACAGATGAAACT+TGG | - | chr2.4:2558650-2558669 | None:intergenic | 40.0% | |
GGACCTTTGCTTGACAAAAT+TGG | + | chr2.4:2558690-2558709 | MS.gene89091:CDS | 40.0% | |
TCTATTCCTTTCAGAATCGG+AGG | - | chr2.4:2556895-2556914 | None:intergenic | 40.0% | |
TGACAGAGCCTCAAAAAGTT+AGG | + | chr2.4:2558805-2558824 | MS.gene89091:CDS | 40.0% | |
TGTACCTGACTTAGAGAAGT+GGG | - | chr2.4:2557448-2557467 | None:intergenic | 40.0% | |
TTCAGTTTCGTGGAAATGCT+GGG | + | chr2.4:2559499-2559518 | MS.gene89091:intron | 40.0% | |
TTTACAGCTTCAACTGGAAG+GGG | - | chr2.4:2560390-2560409 | None:intergenic | 40.0% | |
TTTCAGTTTCGTGGAAATGC+TGG | + | chr2.4:2559498-2559517 | MS.gene89091:intron | 40.0% | |
! | AAAGTGTTCTGTGCTATCTG+TGG | - | chr2.4:2558242-2558261 | None:intergenic | 40.0% |
! | ACAGCTTTTACAGCTTCAAC+TGG | - | chr2.4:2560396-2560415 | None:intergenic | 40.0% |
! | AGATAGCTTAGAAAGTGTGG+GGG | - | chr2.4:2557412-2557431 | None:intergenic | 40.0% |
! | CATCGTTCCCCTTTTGTATT+AGG | - | chr2.4:2556766-2556785 | None:intergenic | 40.0% |
! | CATTCGTGCTTGTTAACAGA+AGG | - | chr2.4:2560321-2560340 | None:intergenic | 40.0% |
! | CTTAAAGGTTCTGATTGAGG+AGG | - | chr2.4:2558191-2558210 | None:intergenic | 40.0% |
! | CTTTTACAGCTTCAACTGGA+AGG | - | chr2.4:2560392-2560411 | None:intergenic | 40.0% |
! | GAATTAGGAAATTGGCCTAG+TGG | + | chr2.4:2558273-2558292 | MS.gene89091:intron | 40.0% |
! | GTCCTTAAAGGTTCTGATTG+AGG | - | chr2.4:2558194-2558213 | None:intergenic | 40.0% |
! | TCCTTTTCCAAATGATTGGC+AGG | + | chr2.4:2559096-2559115 | MS.gene89091:CDS | 40.0% |
! | TGGTATTTGCAGTCTGCTTT+TGG | + | chr2.4:2559767-2559786 | MS.gene89091:intron | 40.0% |
! | TGGTTTCATTGGCGTTGAAA+GGG | - | chr2.4:2558069-2558088 | None:intergenic | 40.0% |
!! | CATTGCAAGATTTTGACAGC+TGG | + | chr2.4:2558106-2558125 | MS.gene89091:intron | 40.0% |
!! | GAATCGAGTTGGCATCAAAT+TGG | + | chr2.4:2557976-2557995 | MS.gene89091:intron | 40.0% |
!! | GATTAGTCTCTGTAGGAGTT+TGG | + | chr2.4:2557842-2557861 | MS.gene89091:intron | 40.0% |
!! | TATTTGCAGTCTGCTTTTGG+TGG | + | chr2.4:2559770-2559789 | MS.gene89091:intron | 40.0% |
!! | TCCCTGAAACATTTGGTTTG+AGG | + | chr2.4:2557759-2557778 | MS.gene89091:intron | 40.0% |
!!! | AATTGGTTTTACGCCAGAGA+AGG | + | chr2.4:2558707-2558726 | MS.gene89091:CDS | 40.0% |
AAATAAACACAGACACGGGG+AGG | + | chr2.4:2558309-2558328 | MS.gene89091:intron | 45.0% | |
AAGTGAGATTGCTCAGCATC+AGG | + | chr2.4:2558866-2558885 | MS.gene89091:CDS | 45.0% | |
AATAAACACAGACACGGGGA+GGG | + | chr2.4:2558310-2558329 | MS.gene89091:intron | 45.0% | |
ACAATACTTCCTGCAGGCAA+TGG | + | chr2.4:2558537-2558556 | MS.gene89091:intron | 45.0% | |
ACCTCATCATCAGACATTCC+AGG | - | chr2.4:2560832-2560851 | None:intergenic | 45.0% | |
ACGCATCATAATACGCTTCG+AGG | - | chr2.4:2560614-2560633 | None:intergenic | 45.0% | |
CAATCTCACTTTCACACCAG+AGG | - | chr2.4:2558857-2558876 | None:intergenic | 45.0% | |
CGAAGCGTATTATGATGCGT+GGG | + | chr2.4:2560614-2560633 | MS.gene89091:CDS | 45.0% | |
CGTTAACCTCCGATTCTGAA+AGG | + | chr2.4:2556886-2556905 | MS.gene89091:intron | 45.0% | |
CTTCCAACTCTTTACTCGGA+GGG | + | chr2.4:2560970-2560989 | MS.gene89091:CDS | 45.0% | |
CTTTCACACCAGAGGAAAAC+TGG | - | chr2.4:2558849-2558868 | None:intergenic | 45.0% | |
GAAAAGAGGAACCCTATCCT+AGG | + | chr2.4:2561039-2561058 | MS.gene89091:CDS | 45.0% | |
GAAGTCAAGAGCAAAGACGA+GGG | - | chr2.4:2559078-2559097 | None:intergenic | 45.0% | |
GCAGGCTGAAATTGCTATGA+GGG | + | chr2.4:2560795-2560814 | MS.gene89091:intron | 45.0% | |
GGTAACTTCATCTTGGTACC+TGG | - | chr2.4:2559661-2559680 | None:intergenic | 45.0% | |
TCAATTTCAGGCCATGTCGA+AGG | - | chr2.4:2559815-2559834 | None:intergenic | 45.0% | |
TCATCGTTTGTGCTCTCTTC+AGG | + | chr2.4:2560903-2560922 | MS.gene89091:intron | 45.0% | |
TCCAGGAAATGCACTTCTTG+AGG | + | chr2.4:2559393-2559412 | MS.gene89091:CDS | 45.0% | |
TCGAAGCGTATTATGATGCG+TGG | + | chr2.4:2560613-2560632 | MS.gene89091:CDS | 45.0% | |
TCGACATGGCCTGAAATTGA+AGG | + | chr2.4:2559815-2559834 | MS.gene89091:CDS | 45.0% | |
TGATGCCAACTCGATTCACA+CGG | - | chr2.4:2557973-2557992 | None:intergenic | 45.0% | |
TGCAGGCTGAAATTGCTATG+AGG | + | chr2.4:2560794-2560813 | MS.gene89091:intron | 45.0% | |
TGGCCGAGTCTATAGATAAG+TGG | + | chr2.4:2558730-2558749 | MS.gene89091:CDS | 45.0% | |
TGTAAAAGCTGTTGATCCCC+AGG | + | chr2.4:2560404-2560423 | MS.gene89091:CDS | 45.0% | |
TTCAACGCCAATGAAACCAC+CGG | + | chr2.4:2558070-2558089 | MS.gene89091:intron | 45.0% | |
TTCTGGTGCAAATCTGTGGT+TGG | + | chr2.4:2557146-2557165 | MS.gene89091:intron | 45.0% | |
TTGTTTGAAGGCTGGATGCT+TGG | + | chr2.4:2560357-2560376 | MS.gene89091:CDS | 45.0% | |
TTTGTGCTCTCTTCAGGTGA+GGG | + | chr2.4:2560909-2560928 | MS.gene89091:intron | 45.0% | |
! | AACCTTTAAGGACCACCTTG+GGG | + | chr2.4:2558201-2558220 | MS.gene89091:intron | 45.0% |
! | ACCACTAGGTTGGAACAATG+AGG | + | chr2.4:2558379-2558398 | MS.gene89091:intron | 45.0% |
! | ACCTCAAGAAGTGCATTTCC+TGG | - | chr2.4:2559397-2559416 | None:intergenic | 45.0% |
! | AGAACCTTTAAGGACCACCT+TGG | + | chr2.4:2558199-2558218 | MS.gene89091:intron | 45.0% |
! | ATCAAATTGGTCTGACCTGC+TGG | + | chr2.4:2557989-2558008 | MS.gene89091:intron | 45.0% |
! | CCACTAGGTTGGAACAATGA+GGG | + | chr2.4:2558380-2558399 | MS.gene89091:intron | 45.0% |
! | CGCTGCGAGGACATTTTATA+TGG | - | chr2.4:2558357-2558376 | None:intergenic | 45.0% |
! | GAACCTTTAAGGACCACCTT+GGG | + | chr2.4:2558200-2558219 | MS.gene89091:intron | 45.0% |
! | GACAGCATTGAGCACAAGAA+GGG | + | chr2.4:2558591-2558610 | MS.gene89091:CDS | 45.0% |
! | GGAAGGTATGCATTGTATGC+TGG | - | chr2.4:2560955-2560974 | None:intergenic | 45.0% |
! | GTGCAAATCTGTGGTTGGTT+GGG | + | chr2.4:2557151-2557170 | MS.gene89091:intron | 45.0% |
! | GTGGTTTCATTGGCGTTGAA+AGG | - | chr2.4:2558070-2558089 | None:intergenic | 45.0% |
! | TCCTGGAATGTCTGATGATG+AGG | + | chr2.4:2560828-2560847 | MS.gene89091:CDS | 45.0% |
! | TGACAGCATTGAGCACAAGA+AGG | + | chr2.4:2558590-2558609 | MS.gene89091:CDS | 45.0% |
! | TTGAGTATGTGTTGGCCACT+AGG | - | chr2.4:2558291-2558310 | None:intergenic | 45.0% |
!! | AGGTTGTGTTGTTTGAAGGC+TGG | + | chr2.4:2560349-2560368 | MS.gene89091:intron | 45.0% |
!! | TTCGAGGGATTAGTCTCTGT+AGG | + | chr2.4:2557835-2557854 | MS.gene89091:intron | 45.0% |
AAGCTGTTGATCCCCAGGTT+AGG | + | chr2.4:2560409-2560428 | MS.gene89091:intron | 50.0% | |
ACCAAAGTCGCCAGATTCGT+CGG | + | chr2.4:2558136-2558155 | MS.gene89091:intron | 50.0% | |
AGTTTGGGTCCGTGAGCATT+AGG | + | chr2.4:2557858-2557877 | MS.gene89091:intron | 50.0% | |
ATAAACACAGACACGGGGAG+GGG | + | chr2.4:2558311-2558330 | MS.gene89091:intron | 50.0% | |
CACACCCACTTCTCTAAGTC+AGG | + | chr2.4:2557441-2557460 | MS.gene89091:intron | 50.0% | |
CATGAACTTCCATTGCCTGC+AGG | - | chr2.4:2558549-2558568 | None:intergenic | 50.0% | |
CCCTCATTGTTCCAACCTAG+TGG | - | chr2.4:2558383-2558402 | None:intergenic | 50.0% | |
CCTCCGAGTAAAGAGTTGGA+AGG | - | chr2.4:2560972-2560991 | None:intergenic | 50.0% | |
CCTTCCAACTCTTTACTCGG+AGG | + | chr2.4:2560969-2560988 | MS.gene89091:CDS | 50.0% | |
CTGCAGGCAATGGAAGTTCA+TGG | + | chr2.4:2558547-2558566 | MS.gene89091:intron | 50.0% | |
GAAACTTGGGCAGGTGATGA+AGG | - | chr2.4:2558636-2558655 | None:intergenic | 50.0% | |
GAAATTGCTATGAGGGAGGC+AGG | + | chr2.4:2560802-2560821 | MS.gene89091:CDS | 50.0% | |
GACCGCACTGCATTCATAAG+AGG | - | chr2.4:2558452-2558471 | None:intergenic | 50.0% | |
GATGAGGTATGTTGCTCGCA+CGG | + | chr2.4:2560844-2560863 | MS.gene89091:intron | 50.0% | |
GCAATGAGTGGTTCACTGTC+CGG | - | chr2.4:2558092-2558111 | None:intergenic | 50.0% | |
GCAGCAAATACAGAACTCGC+TGG | + | chr2.4:2558043-2558062 | MS.gene89091:intron | 50.0% | |
GGAAGTCAAGAGCAAAGACG+AGG | - | chr2.4:2559079-2559098 | None:intergenic | 50.0% | |
GGCTGAAATTGCTATGAGGG+AGG | + | chr2.4:2560798-2560817 | MS.gene89091:intron | 50.0% | |
GGTATGCATTGTATGCTGGC+AGG | - | chr2.4:2560951-2560970 | None:intergenic | 50.0% | |
GGTGCAAATCTGTGGTTGGT+TGG | + | chr2.4:2557150-2557169 | MS.gene89091:intron | 50.0% | |
GTAAGGGGGCCTTCAATTTC+AGG | - | chr2.4:2559827-2559846 | None:intergenic | 50.0% | |
GTTTGTGCTCTCTTCAGGTG+AGG | + | chr2.4:2560908-2560927 | MS.gene89091:intron | 50.0% | |
TCACTGTCCGGTGGTTTCAT+TGG | - | chr2.4:2558080-2558099 | None:intergenic | 50.0% | |
TGCCTATTCTTGCTCTCCTC+TGG | - | chr2.4:2557177-2557196 | None:intergenic | 50.0% | |
TGCTACCGTGTGAATCGAGT+TGG | + | chr2.4:2557965-2557984 | MS.gene89091:intron | 50.0% | |
TGGACAGATGAAACTTGGGC+AGG | - | chr2.4:2558645-2558664 | None:intergenic | 50.0% | |
TGTTGAGGGTCTGATCCACT+TGG | - | chr2.4:2560997-2561016 | None:intergenic | 50.0% | |
TTATTTGACGGCTGAAGGCC+AGG | + | chr2.4:2559257-2559276 | MS.gene89091:CDS | 50.0% | |
TTTAGTGCTCCTCAAGGCTG+TGG | + | chr2.4:2559044-2559063 | MS.gene89091:CDS | 50.0% | |
! | AATCTGGCGACTTTGGTGGT+GGG | - | chr2.4:2558133-2558152 | None:intergenic | 50.0% |
! | AATTGGTCTGACCTGCTGGA+TGG | + | chr2.4:2557993-2558012 | MS.gene89091:intron | 50.0% |
! | ACCTTTAAGGACCACCTTGG+GGG | + | chr2.4:2558202-2558221 | MS.gene89091:intron | 50.0% |
! | ATCGTGCTGATCCTTCGACA+TGG | + | chr2.4:2559801-2559820 | MS.gene89091:CDS | 50.0% |
!! | CAGTCTGCTTTTGGTGGAAG+AGG | + | chr2.4:2559776-2559795 | MS.gene89091:intron | 50.0% |
!! | TGGTTTTACGCCAGAGAAGG+TGG | + | chr2.4:2558710-2558729 | MS.gene89091:CDS | 50.0% |
AACCTAGTGGTTTCGCTGCG+AGG | - | chr2.4:2558370-2558389 | None:intergenic | 55.0% | |
ACCCAAGCTGTGTCTACCAG+TGG | + | chr2.4:2560676-2560695 | MS.gene89091:CDS | 55.0% | |
ACCCCCAAGGTGGTCCTTAA+AGG | - | chr2.4:2558206-2558225 | None:intergenic | 55.0% | |
ATAGACTCGGCCACCTTCTC+TGG | - | chr2.4:2558723-2558742 | None:intergenic | 55.0% | |
ATGAGTGGTTCACTGTCCGG+TGG | - | chr2.4:2558089-2558108 | None:intergenic | 55.0% | |
CTTGTGAACTGCCATCCAGC+AGG | - | chr2.4:2558007-2558026 | None:intergenic | 55.0% | |
CTTTACTCGGAGGGTCCAAG+TGG | + | chr2.4:2560979-2560998 | MS.gene89091:CDS | 55.0% | |
GAATCTGGCGACTTTGGTGG+TGG | - | chr2.4:2558134-2558153 | None:intergenic | 55.0% | |
GACGAATCTGGCGACTTTGG+TGG | - | chr2.4:2558137-2558156 | None:intergenic | 55.0% | |
GCCACTGGTAGACACAGCTT+GGG | - | chr2.4:2560680-2560699 | None:intergenic | 55.0% | |
GCTGGATGGCAGTTCACAAG+TGG | + | chr2.4:2558007-2558026 | MS.gene89091:intron | 55.0% | |
GGACCCTCCGAGTAAAGAGT+TGG | - | chr2.4:2560976-2560995 | None:intergenic | 55.0% | |
GGCCAGAGGAGAGCAAGAAT+AGG | + | chr2.4:2557172-2557191 | MS.gene89091:intron | 55.0% | |
GTCGTCTTTCCACAGCCTTG+AGG | - | chr2.4:2559056-2559075 | None:intergenic | 55.0% | |
GTGCTCAATGCTGTCAGCAG+TGG | - | chr2.4:2558586-2558605 | None:intergenic | 55.0% | |
TAAACACAGACACGGGGAGG+GGG | + | chr2.4:2558312-2558331 | MS.gene89091:intron | 55.0% | |
TCGCAGCGAAACCACTAGGT+TGG | + | chr2.4:2558369-2558388 | MS.gene89091:intron | 55.0% | |
TTTAAGGACCACCTTGGGGG+TGG | + | chr2.4:2558205-2558224 | MS.gene89091:intron | 55.0% | |
!! | CCAGATTCGTCGGCACTGAT+CGG | + | chr2.4:2558146-2558165 | MS.gene89091:intron | 55.0% |
AAGCTACCTGCAAGCGCCAC+TGG | - | chr2.4:2560695-2560714 | None:intergenic | 60.0% | |
ATGAGGGAGGCAGGCAATCC+TGG | + | chr2.4:2560811-2560830 | MS.gene89091:CDS | 60.0% | |
CGCCACTGGTAGACACAGCT+TGG | - | chr2.4:2560681-2560700 | None:intergenic | 60.0% | |
GCCGACGAATCTGGCGACTT+TGG | - | chr2.4:2558140-2558159 | None:intergenic | 60.0% | |
GTCCTCGCAGCGAAACCACT+AGG | + | chr2.4:2558365-2558384 | MS.gene89091:intron | 60.0% | |
TGTCTACCAGTGGCGCTTGC+AGG | + | chr2.4:2560686-2560705 | MS.gene89091:CDS | 60.0% | |
! | TCTGTGGTTGGTTGGGCCAG+AGG | + | chr2.4:2557158-2557177 | MS.gene89091:intron | 60.0% |
!! | CCGATCAGTGCCGACGAATC+TGG | - | chr2.4:2558149-2558168 | None:intergenic | 60.0% |
!! | GATTCGTCGGCACTGATCGG+TGG | + | chr2.4:2558149-2558168 | MS.gene89091:intron | 60.0% |
AAGGACCACCTTGGGGGTGG+TGG | + | chr2.4:2558208-2558227 | MS.gene89091:intron | 65.0% | |
AGACACGGGGAGGGGGAATG+TGG | + | chr2.4:2558319-2558338 | MS.gene89091:intron | 65.0% | |
! | ACCACCTTGGGGGTGGTGGT+CGG | + | chr2.4:2558212-2558231 | MS.gene89091:intron | 65.0% |
CTCTCCGACCACCACCCCCA+AGG | - | chr2.4:2558219-2558238 | None:intergenic | 70.0% | |
TCCGACCACCACCCCCAAGG+TGG | - | chr2.4:2558216-2558235 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 2556672 | 2561068 | 2556672 | ID=MS.gene89091 |
chr2.4 | mRNA | 2556672 | 2561068 | 2556672 | ID=MS.gene89091.t1;Parent=MS.gene89091 |
chr2.4 | exon | 2556672 | 2556681 | 2556672 | ID=MS.gene89091.t1.exon1;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2556672 | 2556681 | 2556672 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2558553 | 2558926 | 2558553 | ID=MS.gene89091.t1.exon2;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2558553 | 2558926 | 2558553 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559038 | 2559117 | 2559038 | ID=MS.gene89091.t1.exon3;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559038 | 2559117 | 2559038 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559227 | 2559278 | 2559227 | ID=MS.gene89091.t1.exon4;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559227 | 2559278 | 2559227 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559373 | 2559414 | 2559373 | ID=MS.gene89091.t1.exon5;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559373 | 2559414 | 2559373 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559504 | 2559582 | 2559504 | ID=MS.gene89091.t1.exon6;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559504 | 2559582 | 2559504 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559662 | 2559693 | 2559662 | ID=MS.gene89091.t1.exon7;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559662 | 2559693 | 2559662 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2559779 | 2559847 | 2559779 | ID=MS.gene89091.t1.exon8;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2559779 | 2559847 | 2559779 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2560351 | 2560425 | 2560351 | ID=MS.gene89091.t1.exon9;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2560351 | 2560425 | 2560351 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2560591 | 2560707 | 2560591 | ID=MS.gene89091.t1.exon10;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2560591 | 2560707 | 2560591 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2560799 | 2560849 | 2560799 | ID=MS.gene89091.t1.exon11;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2560799 | 2560849 | 2560799 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
chr2.4 | exon | 2560925 | 2561068 | 2560925 | ID=MS.gene89091.t1.exon12;Parent=MS.gene89091.t1 |
chr2.4 | CDS | 2560925 | 2561068 | 2560925 | ID=cds.MS.gene89091.t1;Parent=MS.gene89091.t1 |
Gene Sequence |
Protein sequence |