AlfalfaGEDB | MS.gene47809

M. sativa cultivar XinJiangDaYe / MS.gene47809

KEGG: K02961
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00366.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	RHN76391.1	99	105	1	0	1	105	71	175	1.10E-49	205.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	P17092	79.6	98	19	1	1	98	38	134	3.4e-36	152.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	B7FMT1	99.0	105	1	0	1	105	47	151	7.7e-50	205.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene47809	0.871399	7.04E-67	-1.69E-46
MS.gene049173	MS.gene47809	0.847822	9.07E-60	-1.69E-46
MS.gene049217	MS.gene47809	0.852431	4.64E-61	-1.69E-46
MS.gene049222	MS.gene47809	0.855421	6.38E-62	-1.69E-46
MS.gene049232	MS.gene47809	0.846751	1.78E-59	-1.69E-46
MS.gene049285	MS.gene47809	0.89505	1.39E-75	-1.69E-46
MS.gene049320	MS.gene47809	0.881541	2.20E-70	-1.69E-46
MS.gene04939	MS.gene47809	0.806559	7.76E-50	-1.69E-46
MS.gene049627	MS.gene47809	0.840871	6.70E-58	-1.69E-46
MS.gene049633	MS.gene47809	0.810898	9.17E-51	-1.69E-46
MS.gene05010	MS.gene47809	0.844803	6.03E-59	-1.69E-46
MS.gene050163	MS.gene47809	0.922173	1.39E-88	-1.69E-46
MS.gene050165	MS.gene47809	0.93586	4.36E-97	-1.69E-46
MS.gene050323	MS.gene47809	0.813701	2.24E-51	-1.69E-46
MS.gene050333	MS.gene47809	0.899148	2.64E-77	-1.69E-46
MS.gene050444	MS.gene47809	0.814905	1.21E-51	-1.69E-46
MS.gene050496	MS.gene47809	0.815436	9.25E-52	-1.69E-46
MS.gene050504	MS.gene47809	0.900834	4.93E-78	-1.69E-46
MS.gene050518	MS.gene47809	0.893834	4.34E-75	-1.69E-46
MS.gene050577	MS.gene47809	0.83802	3.68E-57	-1.69E-46
MS.gene050612	MS.gene47809	0.899105	2.75E-77	-1.69E-46
MS.gene050675	MS.gene47809	0.859142	5.07E-63	-1.69E-46
MS.gene050699	MS.gene47809	0.869835	2.30E-66	-1.69E-46
MS.gene050772	MS.gene47809	0.823094	1.67E-53	-1.69E-46
MS.gene050832	MS.gene47809	-0.826737	2.30E-54	-1.69E-46
MS.gene050833	MS.gene47809	-0.804741	1.87E-49	-1.69E-46
MS.gene050876	MS.gene47809	0.876802	1.04E-68	-1.69E-46
MS.gene05087	MS.gene47809	0.86518	7.12E-65	-1.69E-46
MS.gene050904	MS.gene47809	0.834813	2.41E-56	-1.69E-46
MS.gene050986	MS.gene47809	0.879994	7.91E-70	-1.69E-46
MS.gene05100	MS.gene47809	0.860913	1.48E-63	-1.69E-46
MS.gene051317	MS.gene47809	0.853378	2.49E-61	-1.69E-46
MS.gene051364	MS.gene47809	-0.806899	6.57E-50	-1.69E-46
MS.gene051366	MS.gene47809	-0.817867	2.64E-52	-1.69E-46
MS.gene051367	MS.gene47809	-0.804014	2.65E-49	-1.69E-46
MS.gene051551	MS.gene47809	0.842257	2.89E-58	-1.69E-46
MS.gene051579	MS.gene47809	-0.809545	1.79E-50	-1.69E-46
MS.gene051810	MS.gene47809	0.864408	1.24E-64	-1.69E-46
MS.gene051949	MS.gene47809	0.868194	7.83E-66	-1.69E-46
MS.gene052164	MS.gene47809	0.805102	1.57E-49	-1.69E-46
MS.gene052271	MS.gene47809	0.809475	1.86E-50	-1.69E-46
MS.gene052379	MS.gene47809	0.80057	1.35E-48	-1.69E-46
MS.gene052482	MS.gene47809	0.814442	1.54E-51	-1.69E-46
MS.gene052486	MS.gene47809	0.82241	2.40E-53	-1.69E-46
MS.gene052916	MS.gene47809	0.824949	6.12E-54	-1.69E-46
MS.gene053203	MS.gene47809	0.82115	4.71E-53	-1.69E-46
MS.gene053213	MS.gene47809	0.845706	3.43E-59	-1.69E-46
MS.gene053284	MS.gene47809	0.824006	1.02E-53	-1.69E-46
MS.gene053285	MS.gene47809	0.804045	2.61E-49	-1.69E-46
MS.gene053286	MS.gene47809	0.844927	5.58E-59	-1.69E-46
MS.gene053632	MS.gene47809	0.804293	2.32E-49	-1.69E-46
MS.gene054600	MS.gene47809	0.816765	4.67E-52	-1.69E-46
MS.gene054638	MS.gene47809	0.837331	5.54E-57	-1.69E-46
MS.gene054642	MS.gene47809	0.880889	3.78E-70	-1.69E-46
MS.gene05470	MS.gene47809	0.847098	1.43E-59	-1.69E-46
MS.gene054954	MS.gene47809	0.904653	9.81E-80	-1.69E-46
MS.gene055204	MS.gene47809	-0.846917	1.61E-59	-1.69E-46
MS.gene055362	MS.gene47809	0.883552	4.07E-71	-1.69E-46
MS.gene055502	MS.gene47809	0.865916	4.17E-65	-1.69E-46
MS.gene055577	MS.gene47809	0.839235	1.79E-57	-1.69E-46
MS.gene055634	MS.gene47809	0.862901	3.65E-64	-1.69E-46
MS.gene055636	MS.gene47809	0.810361	1.20E-50	-1.69E-46
MS.gene055638	MS.gene47809	0.839381	1.64E-57	-1.69E-46
MS.gene055748	MS.gene47809	0.844559	7.01E-59	-1.69E-46
MS.gene055750	MS.gene47809	0.814253	1.69E-51	-1.69E-46
MS.gene055751	MS.gene47809	0.859301	4.55E-63	-1.69E-46
MS.gene055776	MS.gene47809	0.875045	4.20E-68	-1.69E-46
MS.gene055849	MS.gene47809	0.868578	5.88E-66	-1.69E-46
MS.gene05589	MS.gene47809	0.815669	8.21E-52	-1.69E-46
MS.gene055956	MS.gene47809	-0.814464	1.52E-51	-1.69E-46
MS.gene056083	MS.gene47809	0.807491	4.93E-50	-1.69E-46
MS.gene056374	MS.gene47809	0.8165	5.36E-52	-1.69E-46
MS.gene056504	MS.gene47809	0.860045	2.71E-63	-1.69E-46
MS.gene056510	MS.gene47809	0.856113	4.01E-62	-1.69E-46
MS.gene056549	MS.gene47809	0.833716	4.54E-56	-1.69E-46
MS.gene056550	MS.gene47809	-0.815084	1.11E-51	-1.69E-46
MS.gene056657	MS.gene47809	0.882304	1.17E-70	-1.69E-46
MS.gene056692	MS.gene47809	0.863021	3.35E-64	-1.69E-46
MS.gene056761	MS.gene47809	-0.819332	1.23E-52	-1.69E-46
MS.gene056898	MS.gene47809	0.819408	1.18E-52	-1.69E-46
MS.gene056910	MS.gene47809	0.809857	1.54E-50	-1.69E-46
MS.gene057129	MS.gene47809	0.800967	1.12E-48	-1.69E-46
MS.gene057148	MS.gene47809	0.850262	1.90E-60	-1.69E-46
MS.gene057246	MS.gene47809	0.800249	1.57E-48	-1.69E-46
MS.gene057416	MS.gene47809	0.803019	4.26E-49	-1.69E-46
MS.gene057831	MS.gene47809	0.839002	2.06E-57	-1.69E-46
MS.gene057986	MS.gene47809	0.851739	7.29E-61	-1.69E-46
MS.gene058334	MS.gene47809	-0.819443	1.16E-52	-1.69E-46
MS.gene058335	MS.gene47809	0.831856	1.32E-55	-1.69E-46
MS.gene058419	MS.gene47809	0.878064	3.80E-69	-1.69E-46
MS.gene058544	MS.gene47809	0.829954	3.85E-55	-1.69E-46
MS.gene058719	MS.gene47809	0.84152	4.52E-58	-1.69E-46
MS.gene058723	MS.gene47809	0.806731	7.13E-50	-1.69E-46
MS.gene058773	MS.gene47809	0.871072	9.03E-67	-1.69E-46
MS.gene059022	MS.gene47809	0.900818	5.01E-78	-1.69E-46
MS.gene059023	MS.gene47809	0.836995	6.75E-57	-1.69E-46
MS.gene059026	MS.gene47809	0.817284	3.57E-52	-1.69E-46
MS.gene059029	MS.gene47809	0.825863	3.72E-54	-1.69E-46
MS.gene059079	MS.gene47809	0.851074	1.12E-60	-1.69E-46
MS.gene05912	MS.gene47809	0.874562	6.13E-68	-1.69E-46
MS.gene059479	MS.gene47809	-0.816235	6.14E-52	-1.69E-46
MS.gene059677	MS.gene47809	0.913669	4.70E-84	-1.69E-46
MS.gene059718	MS.gene47809	0.849727	2.69E-60	-1.69E-46
MS.gene059756	MS.gene47809	0.839797	1.28E-57	-1.69E-46
MS.gene059801	MS.gene47809	0.801117	1.05E-48	-1.69E-46
MS.gene059865	MS.gene47809	0.87194	4.66E-67	-1.69E-46
MS.gene060337	MS.gene47809	-0.860761	1.65E-63	-1.69E-46
MS.gene060703	MS.gene47809	0.906633	1.20E-80	-1.69E-46
MS.gene060762	MS.gene47809	0.875765	2.38E-68	-1.69E-46
MS.gene06077	MS.gene47809	0.858403	8.44E-63	-1.69E-46
MS.gene060823	MS.gene47809	-0.841944	3.49E-58	-1.69E-46
MS.gene060982	MS.gene47809	0.846579	1.99E-59	-1.69E-46
MS.gene061150	MS.gene47809	0.864516	1.15E-64	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	MTR_2g101770	99.048	105	1	0	1	105	47	151	9.40e-75	218

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	AT1G79850	69.697	99	27	2	1	97	50	147	2.05e-44	141

Find 19 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTAATACGTTTCTTGTATTT+AGG	0.176759	2.1:-3407103	None:intergenic
CCTGTTCCTGCTAGGAATTC+TGG	0.226525	2.1:+3407238	MS.gene47809:CDS
GGTAAGGCTGATAATTCTTC+TGG	0.342682	2.1:+3407259	MS.gene47809:CDS
CTAAATACAAGAAACGTATT+AGG	0.362043	2.1:+3407104	MS.gene47809:CDS
TTGCTGTTCCTGTTCCTGCT+AGG	0.444869	2.1:+3407230	MS.gene47809:CDS
CCAGAATTCCTAGCAGGAAC+AGG	0.463154	2.1:-3407238	None:intergenic
TAGGATGAAGAAGAAGTATC+AGG	0.470403	2.1:+3407123	MS.gene47809:CDS
CGTTTCTTGTATTTAGGATG+AGG	0.484431	2.1:-3407097	None:intergenic
AGAAGAACAGCCTCAGACTC+AGG	0.489039	2.1:+3407312	MS.gene47809:CDS
CCTCGACATTCCGCTTCAAT+CGG	0.508100	2.1:+3407285	MS.gene47809:CDS
TCCTGCTAGGAATTCTGGTA+AGG	0.524466	2.1:+3407243	MS.gene47809:CDS
TCTTCTTGCTCCGATTGAAG+CGG	0.531289	2.1:-3407295	None:intergenic
GCCTTACCAGAATTCCTAGC+AGG	0.562008	2.1:-3407244	None:intergenic
CAAAACTAAGCCTGAGTCTG+AGG	0.567568	2.1:-3407322	None:intergenic
AATCAAAGCTATGAAAACAA+TGG	0.574259	2.1:+3407012	None:intergenic
CAACGACAAAACCGTGTCTG+TGG	0.582090	2.1:+3407057	MS.gene47809:CDS
AAAGCTATGAAAACAATGGA+AGG	0.583695	2.1:+3407016	None:intergenic
ACGAGTTACTTCCACAGACA+CGG	0.603802	2.1:-3407068	None:intergenic
CCGATTGAAGCGGAATGTCG+AGG	0.647031	2.1:-3407285	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAGTTTTATTCTTACTAAT+AGG	-	chr2.1:3407208-3407227	None:intergenic	15.0%
!	CTAAATACAAGAAACGTATT+AGG	+	chr2.1:3407104-3407123	MS.gene47809:CDS	25.0%
!	CTAATACGTTTCTTGTATTT+AGG	-	chr2.1:3407106-3407125	None:intergenic	25.0%
!	CCTGAAAACGTTTTCAAAGT+TGG	+	chr2.1:3407154-3407173	MS.gene47809:CDS	35.0%
!	CGTTTCTTGTATTTAGGATG+AGG	-	chr2.1:3407100-3407119	None:intergenic	35.0%
!!	CCAACTTTGAAAACGTTTTC+AGG	-	chr2.1:3407157-3407176	None:intergenic	35.0%
!!	TAGGATGAAGAAGAAGTATC+AGG	+	chr2.1:3407123-3407142	MS.gene47809:CDS	35.0%
	GGTAAGGCTGATAATTCTTC+TGG	+	chr2.1:3407259-3407278	MS.gene47809:CDS	40.0%
	ACGAGTTACTTCCACAGACA+CGG	-	chr2.1:3407071-3407090	None:intergenic	45.0%
	TCCTGCTAGGAATTCTGGTA+AGG	+	chr2.1:3407243-3407262	MS.gene47809:CDS	45.0%
	TCTTCTTGCTCCGATTGAAG+CGG	-	chr2.1:3407298-3407317	None:intergenic	45.0%
	AGAAGAACAGCCTCAGACTC+AGG	+	chr2.1:3407312-3407331	MS.gene47809:CDS	50.0%
	CAACGACAAAACCGTGTCTG+TGG	+	chr2.1:3407057-3407076	MS.gene47809:CDS	50.0%
	CCAGAATTCCTAGCAGGAAC+AGG	-	chr2.1:3407241-3407260	None:intergenic	50.0%
	CCTCGACATTCCGCTTCAAT+CGG	+	chr2.1:3407285-3407304	MS.gene47809:CDS	50.0%
	CCTGTTCCTGCTAGGAATTC+TGG	+	chr2.1:3407238-3407257	MS.gene47809:CDS	50.0%
	GCCTTACCAGAATTCCTAGC+AGG	-	chr2.1:3407247-3407266	None:intergenic	50.0%
!	TTGCTGTTCCTGTTCCTGCT+AGG	+	chr2.1:3407230-3407249	MS.gene47809:CDS	50.0%
!!	AGACACGGTTTTGTCGTTGG+TGG	-	chr2.1:3407056-3407075	None:intergenic	50.0%
!!	CACAGACACGGTTTTGTCGT+TGG	-	chr2.1:3407059-3407078	None:intergenic	50.0%
	CCGATTGAAGCGGAATGTCG+AGG	-	chr2.1:3407288-3407307	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	3407022	3407339	3407022	ID=MS.gene47809
chr2.1	mRNA	3407022	3407339	3407022	ID=MS.gene47809.t1;Parent=MS.gene47809
chr2.1	exon	3407022	3407339	3407022	ID=MS.gene47809.t1.exon1;Parent=MS.gene47809.t1
chr2.1	CDS	3407022	3407339	3407022	ID=cds.MS.gene47809.t1;Parent=MS.gene47809.t1

Gene Sequence	>MS.gene47809 ATGAAAACAATGGAAGGAAAAGTTGTGTGTGCCACCAACGACAAAACCGTGTCTGTGGAAGTAACTCGTTTAGCACCTCATCCTAAATACAAGAAACGTATTAGGATGAAGAAGAAGTATCAGGCTCATGATCCTGAAAACGTTTTCAAAGTTGGTGATGTTGTTCAGCTTTGTAAAATTAGACCTATTAGTAAGAATAAAACTTTTCTTGCTGTTCCTGTTCCTGCTAGGAATTCTGGTAAGGCTGATAATTCTTCTGGTGACCTCGACATTCCGCTTCAATCGGAGCAAGAAGAACAGCCTCAGACTCAGGCTTAG
Protein sequence	>MS.gene47809.t1 MKTMEGKVVCATNDKTVSVEVTRLAPHPKYKKRIRMKKKYQAHDPENVFKVGDVVQLCKIRPISKNKTFLAVPVPARNSGKADNSSGDLDIPLQSEQEEQPQTQA