AlfalfaGEDB | MS.gene47809

M. sativa cultivar XinJiangDaYe / MS.gene47809

KEGG: K02961
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00366.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	RHN76391.1	99	105	1	0	1	105	71	175	1.10E-49	205.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	P17092	79.6	98	19	1	1	98	38	134	3.4e-36	152.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	B7FMT1	99.0	105	1	0	1	105	47	151	7.7e-50	205.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene47809	0.871399	7.04E-67	-1.69E-46
MS.gene049173	MS.gene47809	0.847822	9.07E-60	-1.69E-46
MS.gene049217	MS.gene47809	0.852431	4.64E-61	-1.69E-46
MS.gene049222	MS.gene47809	0.855421	6.38E-62	-1.69E-46
MS.gene049232	MS.gene47809	0.846751	1.78E-59	-1.69E-46
MS.gene049285	MS.gene47809	0.89505	1.39E-75	-1.69E-46
MS.gene049320	MS.gene47809	0.881541	2.20E-70	-1.69E-46
MS.gene04939	MS.gene47809	0.806559	7.76E-50	-1.69E-46
MS.gene049627	MS.gene47809	0.840871	6.70E-58	-1.69E-46
MS.gene049633	MS.gene47809	0.810898	9.17E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	MTR_2g101770	99.048	105	1	0	1	105	47	151	9.40e-75	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47809.t1	AT1G79850	69.697	99	27	2	1	97	50	147	2.05e-44	141

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Find 19 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATGAAAACAATGGA+AGG	0.583695	2.1:+3407016	None:intergenic
AATCAAAGCTATGAAAACAA+TGG	0.574259	2.1:+3407012	None:intergenic
ACGAGTTACTTCCACAGACA+CGG	0.603802	2.1:-3407068	None:intergenic
AGAAGAACAGCCTCAGACTC+AGG	0.489039	2.1:+3407312	MS.gene47809:CDS
CAAAACTAAGCCTGAGTCTG+AGG	0.567568	2.1:-3407322	None:intergenic
CAACGACAAAACCGTGTCTG+TGG	0.582090	2.1:+3407057	MS.gene47809:CDS
CCAGAATTCCTAGCAGGAAC+AGG	0.463154	2.1:-3407238	None:intergenic
CCGATTGAAGCGGAATGTCG+AGG	0.647031	2.1:-3407285	None:intergenic
CCTCGACATTCCGCTTCAAT+CGG	0.508100	2.1:+3407285	MS.gene47809:CDS
CCTGTTCCTGCTAGGAATTC+TGG	0.226525	2.1:+3407238	MS.gene47809:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTAAGGCTGATAATTCTTC+TGG	+	chr2.1:3407259-3407278	MS.gene47809:CDS	40.0%
ACGAGTTACTTCCACAGACA+CGG	-	chr2.1:3407071-3407090	None:intergenic	45.0%
TCCTGCTAGGAATTCTGGTA+AGG	+	chr2.1:3407243-3407262	MS.gene47809:CDS	45.0%
TCTTCTTGCTCCGATTGAAG+CGG	-	chr2.1:3407298-3407317	None:intergenic	45.0%
AGAAGAACAGCCTCAGACTC+AGG	+	chr2.1:3407312-3407331	MS.gene47809:CDS	50.0%
CAACGACAAAACCGTGTCTG+TGG	+	chr2.1:3407057-3407076	MS.gene47809:CDS	50.0%
CCAGAATTCCTAGCAGGAAC+AGG	-	chr2.1:3407241-3407260	None:intergenic	50.0%
CCTCGACATTCCGCTTCAAT+CGG	+	chr2.1:3407285-3407304	MS.gene47809:CDS	50.0%
CCTGTTCCTGCTAGGAATTC+TGG	+	chr2.1:3407238-3407257	MS.gene47809:CDS	50.0%
GCCTTACCAGAATTCCTAGC+AGG	-	chr2.1:3407247-3407266	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	3407022	3407339	3407022	ID=MS.gene47809
chr2.1	mRNA	3407022	3407339	3407022	ID=MS.gene47809.t1;Parent=MS.gene47809
chr2.1	exon	3407022	3407339	3407022	ID=MS.gene47809.t1.exon1;Parent=MS.gene47809.t1
chr2.1	CDS	3407022	3407339	3407022	ID=cds.MS.gene47809.t1;Parent=MS.gene47809.t1

Gene Sequence	>MS.gene47809 ATGAAAACAATGGAAGGAAAAGTTGTGTGTGCCACCAACGACAAAACCGTGTCTGTGGAAGTAACTCGTTTAGCACCTCATCCTAAATACAAGAAACGTATTAGGATGAAGAAGAAGTATCAGGCTCATGATCCTGAAAACGTTTTCAAAGTTGGTGATGTTGTTCAGCTTTGTAAAATTAGACCTATTAGTAAGAATAAAACTTTTCTTGCTGTTCCTGTTCCTGCTAGGAATTCTGGTAAGGCTGATAATTCTTCTGGTGACCTCGACATTCCGCTTCAATCGGAGCAAGAAGAACAGCCTCAGACTCAGGCTTAG
Protein sequence	>MS.gene47809.t1 MKTMEGKVVCATNDKTVSVEVTRLAPHPKYKKRIRMKKKYQAHDPENVFKVGDVVQLCKIRPISKNKTFLAVPVPARNSGKADNSSGDLDIPLQSEQEEQPQTQA