AlfalfaGEDB | MS.gene73461

M. sativa cultivar XinJiangDaYe / MS.gene73461

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00175.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73461.t1	XP_003592576.3	96.6	297	7	1	1	297	1	294	1.70E-156	562

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73461.t1	P43394	50.7	278	128	3	26	294	36	313	1.7e-72	274.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73461.t1	A0A396JYK0	96.6	297	7	1	1	297	1	294	1.2e-156	562.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene73461	0.827	1.99E-54	-1.69E-46
MS.gene049173	MS.gene73461	0.819744	9.89E-53	-1.69E-46
MS.gene049217	MS.gene73461	0.847398	1.19E-59	-1.69E-46
MS.gene049222	MS.gene73461	0.862499	4.85E-64	-1.69E-46
MS.gene049232	MS.gene73461	0.841957	3.47E-58	-1.69E-46
MS.gene049285	MS.gene73461	0.861409	1.05E-63	-1.69E-46
MS.gene049320	MS.gene73461	0.862382	5.27E-64	-1.69E-46
MS.gene049627	MS.gene73461	0.828414	9.11E-55	-1.69E-46
MS.gene049633	MS.gene73461	0.827347	1.64E-54	-1.69E-46
MS.gene049865	MS.gene73461	0.801133	1.04E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73461.t1	MTR_1g108710	98.155	271	5	0	27	297	1	271	0.0	543
MS.gene73461.t1	MTR_1g108710	96.390	277	7	1	1	277	1	274	0.0	543

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73461.t1	AT1G15140	70.732	287	77	3	16	297	11	295	2.10e-142	403
MS.gene73461.t1	AT1G15140	69.583	240	66	3	16	250	11	248	1.30e-113	329
MS.gene73461.t1	AT1G15140	69.583	240	66	3	16	250	11	248	1.30e-113	329

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Find 106 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTTGCGAGTCGGTGA+CGG	0.551990	1.4:+83402642	None:intergenic
AAAGTGCGCATGGGAGTGGA+GGG	0.625677	1.4:+83402730	None:intergenic
AACGTGGAAGAGTGACTCAG+CGG	0.719906	1.4:+83402556	None:intergenic
AAGAACAGTTCCAAATTTCT+CGG	0.503898	1.4:+83402262	None:intergenic
AAGCGGCGTAGGATGGACAT+GGG	0.692247	1.4:+83402692	None:intergenic
ACAGTTCCAAATTTCTCGGG+TGG	0.560614	1.4:+83402266	None:intergenic
ACATCTATTCTTGTTGCTGA+TGG	0.438700	1.4:-83398580	MS.gene73461:CDS
ACCGGCGCGTGTGTGAGACG+TGG	0.704486	1.4:+83402502	None:intergenic
ACTGTTCTTGTCTTTGCCAC+TGG	0.391138	1.4:-83402248	MS.gene73461:CDS
AGAACAGTTCCAAATTTCTC+GGG	0.523438	1.4:+83402263	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATCTTTACCACTTGA+AGG	+	chr1.4:83401583-83401602	None:intergenic	30.0%
AAGAACAGTTCCAAATTTCT+CGG	+	chr1.4:83399054-83399073	None:intergenic	30.0%
AAGAATCACCAAAACTAACA+AGG	-	chr1.4:83402171-83402190	MS.gene73461:intron	30.0%
AAGTAGTGATTTACATGCAA+AGG	+	chr1.4:83401128-83401147	None:intergenic	30.0%
AAGTCTACCTAATTAGGAAA+TGG	+	chr1.4:83401891-83401910	None:intergenic	30.0%
AATAATGTAGTTGCAGTTGT+TGG	+	chr1.4:83402105-83402124	None:intergenic	30.0%
ACACTTTATAGCACTTACAT+TGG	+	chr1.4:83400855-83400874	None:intergenic	30.0%
ACAGGACACAAAATTTCTAA+AGG	+	chr1.4:83399387-83399406	None:intergenic	30.0%
ATAGGAGAGATTTAAAGACT+GGG	-	chr1.4:83401442-83401461	MS.gene73461:intron	30.0%
ATTATTCAAAAATAGGGTCC+TGG	-	chr1.4:83402119-83402138	MS.gene73461:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	83398546	83402789	83398546	ID=MS.gene73461
chr1.4	mRNA	83398546	83402789	83398546	ID=MS.gene73461.t1;Parent=MS.gene73461
chr1.4	exon	83402236	83402789	83402236	ID=MS.gene73461.t1.exon1;Parent=MS.gene73461.t1
chr1.4	CDS	83402236	83402789	83402236	ID=cds.MS.gene73461.t1;Parent=MS.gene73461.t1
chr1.4	exon	83399993	83400092	83399993	ID=MS.gene73461.t1.exon2;Parent=MS.gene73461.t1
chr1.4	CDS	83399993	83400092	83399993	ID=cds.MS.gene73461.t1;Parent=MS.gene73461.t1
chr1.4	exon	83399794	83399889	83399794	ID=MS.gene73461.t1.exon3;Parent=MS.gene73461.t1
chr1.4	CDS	83399794	83399889	83399794	ID=cds.MS.gene73461.t1;Parent=MS.gene73461.t1
chr1.4	exon	83399630	83399710	83399630	ID=MS.gene73461.t1.exon4;Parent=MS.gene73461.t1
chr1.4	CDS	83399630	83399710	83399630	ID=cds.MS.gene73461.t1;Parent=MS.gene73461.t1
chr1.4	exon	83398546	83398608	83398546	ID=MS.gene73461.t1.exon5;Parent=MS.gene73461.t1
chr1.4	CDS	83398546	83398608	83398546	ID=cds.MS.gene73461.t1;Parent=MS.gene73461.t1

Gene Sequence

>MS.gene73461

ATGTCACTCCTTTCATTAACACCGCCTCATCGTCTTACCCTCCACTCCCATGCGCACTTTAGCCCCACCCCCTTTCCCATGTCCATCCTACGCCGCTTCAATCTAAACCCCACCAACCACCGTCTCCGTCACCGACTCGCAACCCTTTCCGCCGCCGTACGTCAAGACACCACCGTCTGGACTCCAGCTCCTCTCTCCGAGATCGAACCTGCCGCTGAGTCACTCTTCCACGTTTCCATCGACGTTTCCGACGCCCCTGACCTTGCCACGTCTCACACACGCGCCGGTCAGTATCTTCAGCTTAAAGTCGGTGATTCGCCGAAACCGTCGTTTCTTGCTATCGCTTCGCCGCCGAAGCTTGCGATTAAGAGTGGTGTGTTTGAGTTTTTGGTGAAGAGTGTTGTTGGGTCCACTGCAGAAGCGTTGTGTGGGTTGAAGAAAGGGGATGTTGTTGAGCTTAGTCCGGTTATGGGGAATGGGTTTGATATTAGTCGGATCGACCCACCCGAGAAATTTGGAACTGTTCTTGTCTTTGCCACTGGATCCGGAATTAGGTCAGTTTCTGCCTCAATTTGGGTTGAAAATGTTAGGATTGTTATCTTATTATTTTCCAAAATTTGATTTGGTGTTGATAATTTTCAAAGCTGAATTATAAATTCTCTTGCAATGCTGTAGTAAACATGTTAATTTTGTTTGAGCATATTAAATAAATCAGTCGACAATTCATTCCTTGTATAATTGTCAGTATTAAGGAGAATATTGCATCTTCTAGTATTCTTTGTTTTATTGTCAATCTATCTTCGCATTTCGTATTTGTTATGATCTAGTAAAGTAGGCCCCTTTAGAAATTTTGTGTCCTGTTAGTGATTCATTGGCACTATGGTCTTCAATATGATTTTGTGTTGCAGATATTAAGATTATGGTCTAAATAATAAAGCATTGTTTCCTATATATATGTATTATTAGTGCTACTCTGTTCGGAGTTTTTTGTCATGCTTACATTAGAAAACTAAGAAGCTATTAACAATTGGCGTTGCCTTTAGGTTGTGAATGTGTCATTGGTGGATAACCTAACTGATAGACAGTCGAGGGGAACTAGGAGATCTATGTTAATAGCCAAAGAAAGTAAGTGCAAGAGTTTGATCCTTAGAATGATATGGATTGTACTGAACTATGAAGCCCGGATACTCCAAAATGGTGCCGTACCCGTGTCGGATACGTATCGGATACCGATACTCCGCGGATACTCCGGATACCGTATCCCAGAAGTATCGGAATTAATTATTTTAATTTAAAATATATATTTTATCGGATACTTAAAAGATACTCGACGGATACACACAGATACTTATAAGATACTTCACACAGACGTATCCAAAAAAAAATGAAGTGTATAAAAATGAGATTGTGTTGTGAAAATTTAAGATACGAATCACTATAATTACTTTTCAATTAACAAATTAAATATTATGATTTTGGTGGATGAAAGTAACGAGAGAGGGGAGATTTAATCAATCAACATTAAACAAACTTTGTTTTGAGTTCTTTTATTGATACATTTGTTGATATCCTAACATATGAATGAAAATAGAATATGATTTATACAAAAACTTTACATTTTTTATTTTGATCATATGTATTTTTTTTTTTTTTTGTAAATTGTAACTTTTATGATTATATAGTATGAGTAATCAATGTTTTTTTTAAGTATTTTACACGCATATAAATTTTAATATAAATATTTTGTTAACGTATCTTAGCCATATCGTATCCTAAATTTTAAAAATTTCGCGTATTCGCGTACCCGTATCGTATCGTACCCGTATCGCACTACGTATCCGGGCTTCATAGGTACTGAATGTACTCGGAGGAATAACAATCAACACAATAACATCGAATCAATATATTTAGGGAATAGAAATATTAGAAAGTAAAAGATAGAAGAAGAAGAAGAAGAAGAAGCTAAGCACAAGTCCATAGGGAGAAGGAGACTTTTCTTCAATTTTCTTCATACCCATTATTGATCATCATTTTCCTATTTATGTACAAATCCAAGCTTCCTTGATTTTACGATGAATAGCCACATGTCAATTTGCTCGACCAATTATGTTATGCCACAAGCGATTTTGAATCGTAAACGACCAAGTTCCCTATTAAGTATACAATTCTTTTTCACTTATATCATGGTTCTCATTTAACTCAATTGTAACCAATGTAGCATTACTTCATTACTCGGCAGTTGAATTTCAACAGTGCTCTCAAAATTTTCGATTTTTTTATTACCTTTCGAATATAGATATTTTTGGCCAATGTAAGTGCTATAAAGTGTTTCAGCCATGGCTGTAAGAGGGCAAGTTACCTTCCTTGGTAGACTTGTAGAGTGATTGGCTTGTCTTTGTCTTGCTATTCTTTGTTCCTTTTTCTAAGGATAATATTGTTTTGTCCTTTTCTTTGAATTCATTGTTTCTACTGATGGTGTGTTTTTCACGTTCGACACATAAATTGTTTCGGACCTTGAGTATGATTTTGAATGTGAAAAACACTTTGAATGGTAGAGTTTCTGTTGCAACTCTATCTGGCCTTTGCATGTAAATCACTACTTACTATAATTGTAATGCAATATGCTGCTATTAATCCAATATTTTCTCTTTACTCTCTTTGATATTGGGTGTTATTCATTTACTTTATTGTGTGCAGTCCAATTCGGTCACTTATTGAGTCAGGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGTTAGTTGATTTGTTTGTTAGCCTTTTGACAATATGAAGCCTTGTGATCTGCGACTCTGTACTGTACTAGAGCTTTATCTTACAATTTTCTTTTATGTTATAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGTAAAGTGTGTGGAATTTTGGATTTTTTTGCTTGACTACCTTCAAGTGGTAAAGATTGTTTATAGACATGATTACCTTTGCAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGTGCATTATTATTGCTGTCATCTTTCATTGTCTAGCTACATAGCCACTGTCGTTCTTGTTTAGTTACAAGAAGAAACCTATCATAGAGTGAAAGAAAGACGACAGTAATGATTGTTTTTAGGAAACCGAACCTACTAGGACTAGCTCTGGAATAAAAAGAATAATTAGCACACAGATTTTAGCCATTTCCTAATTAGGTAGACTTCAAATAGAGCCGCGATGATTAAAATTGCAAAGAATACGACTAAAATTTAAAACAATCAAAAGGAATTTAATCAGTTGATGCACATCGCAGAAGAAAAACTGTCTGTATAATTCAAAAATGCATGTCTCTTTTCTTGGAAGATAAAGTGCACAATCAACAAAAACATCAATTTCCTCTTTTTCTTTCTTCTTCCAACAACTGCAACTACATTATTCAAAAATAGGGTCCTGGTGGCTCACTTACTACTTGTACACCGGTAGAAGAATCACCAAAACTAACAAGGTTTTATCCTTTACAAATCCAAGACATTATTGATCCATCATACTGTCCAAAATGATGACATTGTTGTCACTCGGGCCTGGTCTAATTGGACTAGCGAGGTCATTTTGGAAAGGATGTTCCATGGAGGAGTATGAGGGCATCATCATTGAAGGAGCTAGAGGATGGATTGCCAGTTAAGCTGGCTCTTGGGGGCAGTGGGACAGAAAACGGCACTAACACCACCGCATAAAGTATGAGAGGGTTCCAATTGGGAGAATATCATGACAAATATCAGGAAGGTCAAAATATTACCTGATGTAACATATCATCTTTGCTTCATTTGTTACCTTTGTTCTTTTATTGATATATCTGATGCACAATAAGTTTAGTTCACCCGTGAACCAGTTAGCTGCTTCATCTCTCAATACAGTGTCCTGGTTTGTGTCAACTGGTGTTTAAAAGAGAGAGCGTCAATAAGTTTCAACTAGGATTTTACTTGCATTTCATGTTGTTATTCTGATGCATGACCTTTCAATATCAATGTTATTATTGCAGGAAATTACATCTATTCTTGTTGCTGATGGAGTATCAGCTGAGAAGATACTAAAGAACTTCTGA

Protein sequence

>MS.gene73461.t1

MSLLSLTPPHRLTLHSHAHFSPTPFPMSILRRFNLNPTNHRLRHRLATLSAAVRQDTTVWTPAPLSEIEPAAESLFHVSIDVSDAPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAIKSGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGSGISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTEEITSILVADGVSAEKILKNF