Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20812.t1 | XP_003591392.1 | 97.8 | 92 | 2 | 0 | 1 | 92 | 213 | 304 | 3.50E-44 | 187.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20812.t1 | Q9S834 | 96.4 | 83 | 3 | 0 | 1 | 83 | 216 | 298 | 2.6e-40 | 165.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20812.t1 | G7ICX2 | 97.8 | 92 | 2 | 0 | 1 | 92 | 213 | 304 | 2.5e-44 | 187.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049170 | MS.gene20812 | 0.833006 | 6.83E-56 | -1.69E-46 |
MS.gene050060 | MS.gene20812 | 0.85925 | 4.71E-63 | -1.69E-46 |
MS.gene050133 | MS.gene20812 | -0.838511 | 2.75E-57 | -1.69E-46 |
MS.gene050301 | MS.gene20812 | 0.800091 | 1.70E-48 | -1.69E-46 |
MS.gene050315 | MS.gene20812 | 0.80331 | 3.71E-49 | -1.69E-46 |
MS.gene050400 | MS.gene20812 | 0.829043 | 6.42E-55 | -1.69E-46 |
MS.gene050426 | MS.gene20812 | -0.882649 | 8.73E-71 | -1.69E-46 |
MS.gene050464 | MS.gene20812 | 0.831887 | 1.29E-55 | -1.69E-46 |
MS.gene050529 | MS.gene20812 | 0.844398 | 7.75E-59 | -1.69E-46 |
MS.gene050642 | MS.gene20812 | 0.816127 | 6.49E-52 | -1.69E-46 |
MS.gene050670 | MS.gene20812 | 0.863426 | 2.51E-64 | -1.69E-46 |
MS.gene050812 | MS.gene20812 | 0.858578 | 7.48E-63 | -1.69E-46 |
MS.gene05081 | MS.gene20812 | 0.803211 | 3.88E-49 | -1.69E-46 |
MS.gene050971 | MS.gene20812 | 0.815255 | 1.02E-51 | -1.69E-46 |
MS.gene05105 | MS.gene20812 | 0.821451 | 4.01E-53 | -1.69E-46 |
MS.gene051521 | MS.gene20812 | 0.812589 | 3.93E-51 | -1.69E-46 |
MS.gene051525 | MS.gene20812 | 0.856438 | 3.22E-62 | -1.69E-46 |
MS.gene051552 | MS.gene20812 | -0.809781 | 1.60E-50 | -1.69E-46 |
MS.gene051983 | MS.gene20812 | 0.826483 | 2.65E-54 | -1.69E-46 |
MS.gene052011 | MS.gene20812 | -0.854714 | 1.02E-61 | -1.69E-46 |
MS.gene052077 | MS.gene20812 | 0.828907 | 6.92E-55 | -1.69E-46 |
MS.gene052128 | MS.gene20812 | -0.802331 | 5.90E-49 | -1.69E-46 |
MS.gene052134 | MS.gene20812 | 0.820573 | 6.39E-53 | -1.69E-46 |
MS.gene052135 | MS.gene20812 | 0.810067 | 1.39E-50 | -1.69E-46 |
MS.gene052188 | MS.gene20812 | 0.87225 | 3.68E-67 | -1.69E-46 |
MS.gene052253 | MS.gene20812 | 0.816919 | 4.31E-52 | -1.69E-46 |
MS.gene052310 | MS.gene20812 | 0.822213 | 2.67E-53 | -1.69E-46 |
MS.gene052340 | MS.gene20812 | 0.847621 | 1.03E-59 | -1.69E-46 |
MS.gene052414 | MS.gene20812 | 0.801436 | 9.01E-49 | -1.69E-46 |
MS.gene052469 | MS.gene20812 | 0.897528 | 1.29E-76 | -1.69E-46 |
MS.gene052485 | MS.gene20812 | 0.807712 | 4.42E-50 | -1.69E-46 |
MS.gene053169 | MS.gene20812 | 0.804264 | 2.35E-49 | -1.69E-46 |
MS.gene053330 | MS.gene20812 | 0.833188 | 6.16E-56 | -1.69E-46 |
MS.gene053557 | MS.gene20812 | 0.825323 | 4.99E-54 | -1.69E-46 |
MS.gene053928 | MS.gene20812 | 0.833144 | 6.31E-56 | -1.69E-46 |
MS.gene054107 | MS.gene20812 | 0.802747 | 4.84E-49 | -1.69E-46 |
MS.gene054183 | MS.gene20812 | 0.819484 | 1.13E-52 | -1.69E-46 |
MS.gene054349 | MS.gene20812 | 0.848058 | 7.81E-60 | -1.69E-46 |
MS.gene054556 | MS.gene20812 | 0.831033 | 2.10E-55 | -1.69E-46 |
MS.gene054719 | MS.gene20812 | 0.860669 | 1.76E-63 | -1.69E-46 |
MS.gene054884 | MS.gene20812 | -0.809959 | 1.46E-50 | -1.69E-46 |
MS.gene055116 | MS.gene20812 | 0.812188 | 4.81E-51 | -1.69E-46 |
MS.gene055370 | MS.gene20812 | 0.824938 | 6.15E-54 | -1.69E-46 |
MS.gene055539 | MS.gene20812 | 0.885364 | 8.66E-72 | -1.69E-46 |
MS.gene05553 | MS.gene20812 | 0.877674 | 5.20E-69 | -1.69E-46 |
MS.gene05556 | MS.gene20812 | 0.850627 | 1.50E-60 | -1.69E-46 |
MS.gene055601 | MS.gene20812 | -0.811069 | 8.42E-51 | -1.69E-46 |
MS.gene055741 | MS.gene20812 | 0.836792 | 7.60E-57 | -1.69E-46 |
MS.gene055744 | MS.gene20812 | 0.846591 | 1.97E-59 | -1.69E-46 |
MS.gene055971 | MS.gene20812 | 0.801515 | 8.68E-49 | -1.69E-46 |
MS.gene056233 | MS.gene20812 | 0.821935 | 3.10E-53 | -1.69E-46 |
MS.gene056407 | MS.gene20812 | 0.807919 | 4.00E-50 | -1.69E-46 |
MS.gene056633 | MS.gene20812 | 0.813618 | 2.34E-51 | -1.69E-46 |
MS.gene056659 | MS.gene20812 | 0.879135 | 1.60E-69 | -1.69E-46 |
MS.gene056664 | MS.gene20812 | 0.819237 | 1.29E-52 | -1.69E-46 |
MS.gene056723 | MS.gene20812 | 0.814286 | 1.66E-51 | -1.69E-46 |
MS.gene056796 | MS.gene20812 | 0.839805 | 1.27E-57 | -1.69E-46 |
MS.gene056899 | MS.gene20812 | -0.835987 | 1.22E-56 | -1.69E-46 |
MS.gene056979 | MS.gene20812 | 0.818018 | 2.44E-52 | -1.69E-46 |
MS.gene057124 | MS.gene20812 | 0.843146 | 1.68E-58 | -1.69E-46 |
MS.gene057396 | MS.gene20812 | 0.855722 | 5.21E-62 | -1.69E-46 |
MS.gene057749 | MS.gene20812 | 0.821537 | 3.83E-53 | -1.69E-46 |
MS.gene057823 | MS.gene20812 | 0.826845 | 2.17E-54 | -1.69E-46 |
MS.gene058002 | MS.gene20812 | 0.822104 | 2.83E-53 | -1.69E-46 |
MS.gene058007 | MS.gene20812 | 0.809665 | 1.69E-50 | -1.69E-46 |
MS.gene058082 | MS.gene20812 | 0.80421 | 2.41E-49 | -1.69E-46 |
MS.gene05811 | MS.gene20812 | 0.820242 | 7.61E-53 | -1.69E-46 |
MS.gene058142 | MS.gene20812 | 0.848446 | 6.10E-60 | -1.69E-46 |
MS.gene058158 | MS.gene20812 | -0.805032 | 1.62E-49 | -1.69E-46 |
MS.gene058233 | MS.gene20812 | 0.812017 | 5.24E-51 | -1.69E-46 |
MS.gene058276 | MS.gene20812 | 0.867461 | 1.35E-65 | -1.69E-46 |
MS.gene058365 | MS.gene20812 | 0.803662 | 3.13E-49 | -1.69E-46 |
MS.gene058376 | MS.gene20812 | 0.800788 | 1.22E-48 | -1.69E-46 |
MS.gene058444 | MS.gene20812 | 0.836972 | 6.84E-57 | -1.69E-46 |
MS.gene058700 | MS.gene20812 | 0.845511 | 3.88E-59 | -1.69E-46 |
MS.gene058743 | MS.gene20812 | 0.819521 | 1.11E-52 | -1.69E-46 |
MS.gene058746 | MS.gene20812 | 0.818923 | 1.52E-52 | -1.69E-46 |
MS.gene058928 | MS.gene20812 | 0.80374 | 3.02E-49 | -1.69E-46 |
MS.gene058948 | MS.gene20812 | 0.800532 | 1.38E-48 | -1.69E-46 |
MS.gene05907 | MS.gene20812 | 0.825132 | 5.54E-54 | -1.69E-46 |
MS.gene059285 | MS.gene20812 | 0.810426 | 1.16E-50 | -1.69E-46 |
MS.gene059366 | MS.gene20812 | 0.80031 | 1.53E-48 | -1.69E-46 |
MS.gene059420 | MS.gene20812 | 0.862005 | 6.88E-64 | -1.69E-46 |
MS.gene05959 | MS.gene20812 | 0.818019 | 2.44E-52 | -1.69E-46 |
MS.gene059676 | MS.gene20812 | 0.829666 | 4.53E-55 | -1.69E-46 |
MS.gene059688 | MS.gene20812 | 0.81411 | 1.82E-51 | -1.69E-46 |
MS.gene059692 | MS.gene20812 | 0.813826 | 2.10E-51 | -1.69E-46 |
MS.gene059695 | MS.gene20812 | 0.814737 | 1.32E-51 | -1.69E-46 |
MS.gene059717 | MS.gene20812 | 0.82905 | 6.39E-55 | -1.69E-46 |
MS.gene05984 | MS.gene20812 | 0.833621 | 4.80E-56 | -1.69E-46 |
MS.gene059894 | MS.gene20812 | 0.810847 | 9.41E-51 | -1.69E-46 |
MS.gene059946 | MS.gene20812 | 0.812556 | 3.99E-51 | -1.69E-46 |
MS.gene060247 | MS.gene20812 | 0.801196 | 1.01E-48 | -1.69E-46 |
MS.gene060407 | MS.gene20812 | 0.851182 | 1.05E-60 | -1.69E-46 |
MS.gene060717 | MS.gene20812 | 0.840177 | 1.02E-57 | -1.69E-46 |
MS.gene06090 | MS.gene20812 | 0.818088 | 2.35E-52 | -1.69E-46 |
MS.gene061049 | MS.gene20812 | 0.80851 | 2.99E-50 | -1.69E-46 |
MS.gene061154 | MS.gene20812 | 0.869807 | 2.35E-66 | -1.69E-46 |
MS.gene061159 | MS.gene20812 | 0.818612 | 1.79E-52 | -1.69E-46 |
MS.gene061231 | MS.gene20812 | 0.834808 | 2.42E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20812.t1 | MTR_1g086940 | 97.826 | 92 | 2 | 0 | 1 | 92 | 213 | 304 | 2.98e-62 | 191 |
MS.gene20812.t1 | MTR_7g109610 | 92.391 | 92 | 7 | 0 | 1 | 92 | 210 | 301 | 6.15e-58 | 180 |
MS.gene20812.t1 | MTR_7g082980 | 55.714 | 70 | 31 | 0 | 1 | 70 | 181 | 250 | 5.01e-19 | 79.3 |
MS.gene20812.t1 | MTR_5g026840 | 51.429 | 70 | 34 | 0 | 1 | 70 | 190 | 259 | 1.77e-18 | 77.8 |
MS.gene20812.t1 | MTR_4g075100 | 44.944 | 89 | 49 | 0 | 1 | 89 | 147 | 235 | 2.79e-18 | 76.3 |
MS.gene20812.t1 | MTR_4g069800 | 44.286 | 70 | 39 | 0 | 1 | 70 | 169 | 238 | 3.22e-13 | 62.8 |
MS.gene20812.t1 | MTR_4g069800 | 44.286 | 70 | 39 | 0 | 1 | 70 | 201 | 270 | 3.86e-13 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20812.t1 | AT1G02560 | 96.386 | 83 | 3 | 0 | 1 | 83 | 216 | 298 | 1.05e-53 | 169 |
MS.gene20812.t1 | AT5G45390 | 52.857 | 70 | 33 | 0 | 1 | 70 | 181 | 250 | 5.98e-20 | 81.6 |
MS.gene20812.t1 | AT1G66670 | 52.857 | 70 | 33 | 0 | 1 | 70 | 187 | 256 | 1.85e-17 | 75.1 |
MS.gene20812.t1 | AT5G23140 | 39.560 | 91 | 53 | 2 | 1 | 90 | 150 | 239 | 8.03e-14 | 64.7 |
MS.gene20812.t1 | AT1G11750 | 45.714 | 70 | 38 | 0 | 1 | 70 | 198 | 267 | 8.75e-14 | 64.7 |
MS.gene20812.t1 | AT1G11750 | 45.714 | 70 | 38 | 0 | 1 | 70 | 216 | 285 | 1.36e-13 | 64.3 |
MS.gene20812.t1 | AT4G17040 | 37.234 | 94 | 47 | 2 | 1 | 93 | 215 | 297 | 1.12e-11 | 59.3 |
Find 23 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCGATGAGTCCATATTCTT+TGG | 0.288327 | 1.2:+65379683 | None:intergenic |
GCAAAAGAAGCCAAAGAATA+TGG | 0.292792 | 1.2:-65379693 | MS.gene20812:CDS |
GATAGGACAGATACCCATTC+AGG | 0.309008 | 1.2:+65379775 | None:intergenic |
GCAAACTGACATAGATATTC+AGG | 0.327655 | 1.2:-65380235 | MS.gene20812:intron |
TAAACTTTGCCCAGTTTGAT+AGG | 0.348450 | 1.2:+65379758 | None:intergenic |
GGGTATCTGTCCTATCAAAC+TGG | 0.363774 | 1.2:-65379768 | MS.gene20812:CDS |
TCTCAAAGCTCTTCAGCCTT+TGG | 0.393350 | 1.2:-65379643 | MS.gene20812:CDS |
CCCTCTTCTGCAGCTGCCAA+AGG | 0.448770 | 1.2:+65379627 | None:intergenic |
CATCACAAGGCAAACCTGAA+TGG | 0.459835 | 1.2:-65379789 | MS.gene20812:CDS |
ATCACAAGGCAAACCTGAAT+GGG | 0.495914 | 1.2:-65379788 | MS.gene20812:CDS |
GCCTTTGGCAGCTGCAGAAG+AGG | 0.529560 | 1.2:-65379628 | MS.gene20812:CDS |
ATGATTCATCAACCGCTTGG+TGG | 0.536787 | 1.2:-65380270 | MS.gene20812:CDS |
CTGCAGAAGAGGGTAAAGAC+CGG | 0.577540 | 1.2:-65379617 | MS.gene20812:CDS |
AAATGAAATGCTGCATCACA+AGG | 0.584369 | 1.2:-65379802 | MS.gene20812:CDS |
CCTTTGGCAGCTGCAGAAGA+GGG | 0.585082 | 1.2:-65379627 | MS.gene20812:CDS |
AAGTTTAGAGAAAATTAACC+AGG | 0.591158 | 1.2:-65379742 | MS.gene20812:CDS |
GAAATTAGGAAATAATAGCC+CGG | 0.595521 | 1.2:+65379598 | None:intergenic |
ATAATGATTCATCAACCGCT+TGG | 0.597203 | 1.2:-65380273 | MS.gene20812:CDS |
TGCAGAAGAGGGTAAAGACC+GGG | 0.605444 | 1.2:-65379616 | MS.gene20812:CDS |
GGTATCTGTCCTATCAAACT+GGG | 0.622810 | 1.2:-65379767 | MS.gene20812:CDS |
AAAGAATATGGACTCATCGA+TGG | 0.623110 | 1.2:-65379681 | MS.gene20812:CDS |
AAAGGCTGAAGAGCTTTGAG+AGG | 0.630190 | 1.2:+65379645 | None:intergenic |
CCTCCTTGAAAACCACCAAG+CGG | 0.689995 | 1.2:+65380258 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATATTATCATGGTTTA+GGG | + | chr1.2:65379796-65379815 | None:intergenic | 15.0% |
!!! | TCTTTTTCATAGAAAATTAA+AGG | - | chr1.2:65379735-65379754 | MS.gene20812:CDS | 15.0% |
!! | AAAATAGGAATATAAGAGTA+TGG | + | chr1.2:65379836-65379855 | None:intergenic | 20.0% |
!! | AATAAAAATAGAACAGGTAT+AGG | + | chr1.2:65379865-65379884 | None:intergenic | 20.0% |
!! | ATAGATATTCAGGTATATAT+AGG | - | chr1.2:65379647-65379666 | MS.gene20812:CDS | 20.0% |
!! | GTTTAATATTATCATGGTTT+AGG | + | chr1.2:65379797-65379816 | None:intergenic | 20.0% |
!!! | ATTTTATCAAAAGAAACAAG+AGG | + | chr1.2:65379709-65379728 | None:intergenic | 20.0% |
! | AAGTTTAGAGAAAATTAACC+AGG | - | chr1.2:65380130-65380149 | MS.gene20812:intron | 25.0% |
! | GAATGGAATAAAAATAGAAC+AGG | + | chr1.2:65379871-65379890 | None:intergenic | 25.0% |
! | TTTGAACACCTATACAATAA+GGG | - | chr1.2:65379944-65379963 | MS.gene20812:intron | 25.0% |
!! | TTTTGAACACCTATACAATA+AGG | - | chr1.2:65379943-65379962 | MS.gene20812:intron | 25.0% |
AAATAGAACAGGTATAGGAA+AGG | + | chr1.2:65379860-65379879 | None:intergenic | 30.0% | |
AGAAAATTAAAGGCTATCAC+AGG | - | chr1.2:65379745-65379764 | MS.gene20812:CDS | 30.0% | |
AGAGTATGGAACAATATTGT+GGG | + | chr1.2:65379822-65379841 | None:intergenic | 30.0% | |
AGGTATAGGAAAGGAAAAAT+AGG | + | chr1.2:65379851-65379870 | None:intergenic | 30.0% | |
GATGATATCCCTTATTGTAT+AGG | + | chr1.2:65379955-65379974 | None:intergenic | 30.0% | |
TGGGGAGTTTAATATTATCA+TGG | + | chr1.2:65379803-65379822 | None:intergenic | 30.0% | |
TTATGATTCATAATCCTCTC+AGG | - | chr1.2:65380046-65380065 | MS.gene20812:intron | 30.0% | |
TTGCACTCATGAAAAAATCA+CGG | + | chr1.2:65380163-65380182 | None:intergenic | 30.0% | |
! | AAGAGTATGGAACAATATTG+TGG | + | chr1.2:65379823-65379842 | None:intergenic | 30.0% |
!!! | TTTTGGCTTTAGTTGGTTTT+TGG | - | chr1.2:65379901-65379920 | MS.gene20812:intron | 30.0% |
AAAGAATATGGACTCATCGA+TGG | - | chr1.2:65380191-65380210 | MS.gene20812:intron | 35.0% | |
AAATGAAATGCTGCATCACA+AGG | - | chr1.2:65380070-65380089 | MS.gene20812:intron | 35.0% | |
ATCGATGAGTCCATATTCTT+TGG | + | chr1.2:65380192-65380211 | None:intergenic | 35.0% | |
ATGGTTTAGGGATAACTCAT+TGG | + | chr1.2:65379784-65379803 | None:intergenic | 35.0% | |
GAGTATGGAACAATATTGTG+GGG | + | chr1.2:65379821-65379840 | None:intergenic | 35.0% | |
GCAAAAGAAGCCAAAGAATA+TGG | - | chr1.2:65380179-65380198 | MS.gene20812:intron | 35.0% | |
GCAAACTGACATAGATATTC+AGG | - | chr1.2:65379637-65379656 | MS.gene20812:CDS | 35.0% | |
TAAACTTTGCCCAGTTTGAT+AGG | + | chr1.2:65380117-65380136 | None:intergenic | 35.0% | |
! | CTAAAGCCAAAAGTATGACA+TGG | + | chr1.2:65379893-65379912 | None:intergenic | 35.0% |
! | TCCATTCCATGTCATACTTT+TGG | - | chr1.2:65379884-65379903 | MS.gene20812:intron | 35.0% |
!!! | GCTTTAGTTGGTTTTTGGAT+TGG | - | chr1.2:65379906-65379925 | MS.gene20812:intron | 35.0% |
!!! | GTCATACTTTTGGCTTTAGT+TGG | - | chr1.2:65379894-65379913 | MS.gene20812:intron | 35.0% |
AAAAATCACGGTCTGTATCC+TGG | + | chr1.2:65380151-65380170 | None:intergenic | 40.0% | |
AGGTTTGTGCCATCAAATGA+GGG | + | chr1.2:65379689-65379708 | None:intergenic | 40.0% | |
ATCACAAGGCAAACCTGAAT+GGG | - | chr1.2:65380084-65380103 | MS.gene20812:intron | 40.0% | |
CTAACCAATCATGTCTTCCT+TGG | + | chr1.2:65379984-65380003 | None:intergenic | 40.0% | |
GGTATCTGTCCTATCAAACT+GGG | - | chr1.2:65380105-65380124 | MS.gene20812:intron | 40.0% | |
! | CAAGGAAGACATGATTGGTT+AGG | - | chr1.2:65379982-65380001 | MS.gene20812:intron | 40.0% |
! | GCCAAAAGTATGACATGGAA+TGG | + | chr1.2:65379888-65379907 | None:intergenic | 40.0% |
ATCATGTCTTCCTTGGCACA+TGG | + | chr1.2:65379977-65379996 | None:intergenic | 45.0% | |
ATGATTCATCAACCGCTTGG+TGG | - | chr1.2:65379602-65379621 | MS.gene20812:CDS | 45.0% | |
CAGCATTTCATTTGCCTGAG+AGG | + | chr1.2:65380063-65380082 | None:intergenic | 45.0% | |
CATCACAAGGCAAACCTGAA+TGG | - | chr1.2:65380083-65380102 | MS.gene20812:intron | 45.0% | |
GAGGTTTGTGCCATCAAATG+AGG | + | chr1.2:65379690-65379709 | None:intergenic | 45.0% | |
GATAGGACAGATACCCATTC+AGG | + | chr1.2:65380100-65380119 | None:intergenic | 45.0% | |
GGGTATCTGTCCTATCAAAC+TGG | - | chr1.2:65380104-65380123 | MS.gene20812:intron | 45.0% | |
GGTTTGTGCCATCAAATGAG+GGG | + | chr1.2:65379688-65379707 | None:intergenic | 45.0% | |
GTTTGTGCCATCAAATGAGG+GGG | + | chr1.2:65379687-65379706 | None:intergenic | 45.0% | |
TCTCAAAGCTCTTCAGCCTT+TGG | - | chr1.2:65380229-65380248 | MS.gene20812:intron | 45.0% | |
TGTGCCAAGGAAGACATGAT+TGG | - | chr1.2:65379977-65379996 | MS.gene20812:intron | 45.0% | |
TTTGTGCCATCAAATGAGGG+GGG | + | chr1.2:65379686-65379705 | None:intergenic | 45.0% | |
!! | AAAGGCTGAAGAGCTTTGAG+AGG | + | chr1.2:65380230-65380249 | None:intergenic | 45.0% |
AATGAGGGGGGGAAGAAAAC+AGG | + | chr1.2:65379674-65379693 | None:intergenic | 50.0% | |
ATGAGGGGGGGAAGAAAACA+GGG | + | chr1.2:65379673-65379692 | None:intergenic | 50.0% | |
CCTCCTTGAAAACCACCAAG+CGG | + | chr1.2:65379617-65379636 | None:intergenic | 50.0% | |
CTGCAGAAGAGGGTAAAGAC+CGG | - | chr1.2:65380255-65380274 | MS.gene20812:CDS | 50.0% | |
GGGATATCATCCATGTGCCA+AGG | - | chr1.2:65379964-65379983 | MS.gene20812:intron | 50.0% | |
TGCAGAAGAGGGTAAAGACC+GGG | - | chr1.2:65380256-65380275 | MS.gene20812:CDS | 50.0% | |
TTCTTCCCCCCCTCATTTGA+TGG | - | chr1.2:65379677-65379696 | MS.gene20812:CDS | 50.0% | |
TTGTGCCATCAAATGAGGGG+GGG | + | chr1.2:65379685-65379704 | None:intergenic | 50.0% | |
!! | CAACCGCTTGGTGGTTTTCA+AGG | - | chr1.2:65379611-65379630 | MS.gene20812:CDS | 50.0% |
!! | CGCTTGGTGGTTTTCAAGGA+GGG | - | chr1.2:65379615-65379634 | MS.gene20812:CDS | 50.0% |
CCTTTGGCAGCTGCAGAAGA+GGG | - | chr1.2:65380245-65380264 | MS.gene20812:CDS | 55.0% | |
!! | CCGCTTGGTGGTTTTCAAGG+AGG | - | chr1.2:65379614-65379633 | MS.gene20812:CDS | 55.0% |
CCCTCTTCTGCAGCTGCCAA+AGG | + | chr1.2:65380248-65380267 | None:intergenic | 60.0% | |
GCCTTTGGCAGCTGCAGAAG+AGG | - | chr1.2:65380244-65380263 | MS.gene20812:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 65379602 | 65380292 | 65379602 | ID=MS.gene20812 |
chr1.2 | mRNA | 65379602 | 65380292 | 65379602 | ID=MS.gene20812.t1;Parent=MS.gene20812 |
chr1.2 | exon | 65380236 | 65380292 | 65380236 | ID=MS.gene20812.t1.exon1;Parent=MS.gene20812.t1 |
chr1.2 | CDS | 65380236 | 65380292 | 65380236 | ID=cds.MS.gene20812.t1;Parent=MS.gene20812.t1 |
chr1.2 | exon | 65379602 | 65379826 | 65379602 | ID=MS.gene20812.t1.exon2;Parent=MS.gene20812.t1 |
chr1.2 | CDS | 65379602 | 65379826 | 65379602 | ID=cds.MS.gene20812.t1;Parent=MS.gene20812.t1 |
Gene Sequence |
Protein sequence |