Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21770.t1 | XP_003610830.1 | 99.5 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 1.20E-218 | 768.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21770.t1 | Q9LFL3 | 68.9 | 411 | 112 | 6 | 1 | 399 | 1 | 407 | 1.4e-146 | 520.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21770.t1 | G7K569 | 99.5 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 8.6e-219 | 768.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21770 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene04918 | MS.gene21770 | 0.809587 | 1.76E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene21770 | 0.866003 | 3.92E-65 | -1.69E-46 |
| MS.gene049499 | MS.gene21770 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene21770 | 0.852474 | 4.51E-61 | -1.69E-46 |
| MS.gene050213 | MS.gene21770 | 0.824894 | 6.30E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene21770 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene050379 | MS.gene21770 | 0.81383 | 2.10E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene21770 | 0.821677 | 3.55E-53 | -1.69E-46 |
| MS.gene050571 | MS.gene21770 | 0.837351 | 5.47E-57 | -1.69E-46 |
| MS.gene050646 | MS.gene21770 | 0.859438 | 4.14E-63 | -1.69E-46 |
| MS.gene050654 | MS.gene21770 | 0.851219 | 1.02E-60 | -1.69E-46 |
| MS.gene050737 | MS.gene21770 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene21770 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene050945 | MS.gene21770 | 0.814483 | 1.51E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene21770 | 0.821874 | 3.20E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene21770 | 0.802474 | 5.52E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene21770 | 0.814272 | 1.68E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene21770 | 0.82784 | 1.25E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene21770 | 0.813263 | 2.80E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene21770 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene21770 | 0.808977 | 2.38E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene21770 | 0.818399 | 2.00E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene21770 | 0.853334 | 2.56E-61 | -1.69E-46 |
| MS.gene052037 | MS.gene21770 | 0.821007 | 5.08E-53 | -1.69E-46 |
| MS.gene052118 | MS.gene21770 | 0.856421 | 3.26E-62 | -1.69E-46 |
| MS.gene052307 | MS.gene21770 | 0.815498 | 8.96E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene21770 | 0.831507 | 1.61E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene21770 | 0.801811 | 7.55E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene21770 | 0.808998 | 2.35E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene21770 | 0.839949 | 1.17E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene21770 | 0.810933 | 9.01E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene21770 | 0.828169 | 1.04E-54 | -1.69E-46 |
| MS.gene053620 | MS.gene21770 | 0.863428 | 2.51E-64 | -1.69E-46 |
| MS.gene053726 | MS.gene21770 | 0.832312 | 1.02E-55 | -1.69E-46 |
| MS.gene053931 | MS.gene21770 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene21770 | 0.826117 | 3.23E-54 | -1.69E-46 |
| MS.gene05439 | MS.gene21770 | 0.811928 | 5.48E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene21770 | 0.80622 | 9.14E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene21770 | 0.809599 | 1.75E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene21770 | 0.915213 | 7.68E-85 | -1.69E-46 |
| MS.gene054893 | MS.gene21770 | 0.913319 | 7.06E-84 | -1.69E-46 |
| MS.gene054957 | MS.gene21770 | 0.834517 | 2.86E-56 | -1.69E-46 |
| MS.gene055231 | MS.gene21770 | 0.817229 | 3.67E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene21770 | 0.836894 | 7.16E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene21770 | 0.802139 | 6.46E-49 | -1.69E-46 |
| MS.gene05615 | MS.gene21770 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene21770 | 0.804731 | 1.88E-49 | -1.69E-46 |
| MS.gene056519 | MS.gene21770 | 0.815108 | 1.09E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene21770 | 0.804713 | 1.89E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene21770 | 0.863864 | 1.84E-64 | -1.69E-46 |
| MS.gene056831 | MS.gene21770 | 0.812687 | 3.74E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene21770 | 0.846088 | 2.71E-59 | -1.69E-46 |
| MS.gene056973 | MS.gene21770 | 0.839908 | 1.20E-57 | -1.69E-46 |
| MS.gene057034 | MS.gene21770 | 0.832288 | 1.03E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene21770 | 0.831477 | 1.63E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene21770 | 0.816308 | 5.91E-52 | -1.69E-46 |
| MS.gene057174 | MS.gene21770 | 0.854248 | 1.40E-61 | -1.69E-46 |
| MS.gene057208 | MS.gene21770 | 0.816868 | 4.43E-52 | -1.69E-46 |
| MS.gene057371 | MS.gene21770 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene21770 | 0.846471 | 2.13E-59 | -1.69E-46 |
| MS.gene057919 | MS.gene21770 | 0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene21770 | 0.803619 | 3.20E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene21770 | 0.846923 | 1.60E-59 | -1.69E-46 |
| MS.gene058159 | MS.gene21770 | 0.819973 | 8.76E-53 | -1.69E-46 |
| MS.gene058289 | MS.gene21770 | 0.810561 | 1.08E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene21770 | 0.842869 | 1.99E-58 | -1.69E-46 |
| MS.gene058592 | MS.gene21770 | 0.825054 | 5.78E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene21770 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene21770 | 0.814055 | 1.87E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene21770 | 0.86713 | 1.72E-65 | -1.69E-46 |
| MS.gene05952 | MS.gene21770 | 0.824568 | 7.52E-54 | -1.69E-46 |
| MS.gene059686 | MS.gene21770 | 0.817539 | 3.13E-52 | -1.69E-46 |
| MS.gene059774 | MS.gene21770 | 0.823682 | 1.21E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene21770 | -0.836536 | 8.83E-57 | -1.69E-46 |
| MS.gene059965 | MS.gene21770 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene06023 | MS.gene21770 | 0.807926 | 3.98E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene21770 | 0.853588 | 2.16E-61 | -1.69E-46 |
| MS.gene060413 | MS.gene21770 | 0.84135 | 5.01E-58 | -1.69E-46 |
| MS.gene060520 | MS.gene21770 | 0.815256 | 1.01E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene21770 | 0.861553 | 9.47E-64 | -1.69E-46 |
| MS.gene060697 | MS.gene21770 | 0.821695 | 3.52E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene21770 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene060785 | MS.gene21770 | 0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene21770 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene21770 | 0.841231 | 5.39E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene21770 | 0.850383 | 1.76E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene21770 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene21770 | 0.836485 | 9.10E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene21770 | 0.832131 | 1.13E-55 | -1.69E-46 |
| MS.gene061160 | MS.gene21770 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene21770 | 0.829032 | 6.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21770.t1 | MTR_5g007480 | 99.499 | 399 | 2 | 0 | 1 | 399 | 1 | 399 | 0.0 | 813 |
| MS.gene21770.t1 | MTR_4g077940 | 60.097 | 411 | 145 | 5 | 1 | 396 | 1 | 407 | 9.54e-147 | 422 |
| MS.gene21770.t1 | MTR_4g077940 | 60.097 | 411 | 145 | 5 | 1 | 396 | 28 | 434 | 1.33e-146 | 423 |
| MS.gene21770.t1 | MTR_7g097010 | 40.439 | 319 | 162 | 6 | 8 | 310 | 5 | 311 | 2.31e-69 | 225 |
| MS.gene21770.t1 | MTR_3g110108 | 34.420 | 276 | 157 | 10 | 48 | 309 | 2 | 267 | 8.12e-36 | 137 |
| MS.gene21770.t1 | MTR_3g110108 | 33.818 | 275 | 160 | 9 | 48 | 309 | 2 | 267 | 2.54e-35 | 137 |
| MS.gene21770.t1 | MTR_1g026840 | 31.387 | 274 | 167 | 9 | 48 | 309 | 2 | 266 | 2.61e-34 | 135 |
| MS.gene21770.t1 | MTR_3g088805 | 31.461 | 267 | 175 | 7 | 46 | 309 | 3 | 264 | 1.54e-30 | 122 |
| MS.gene21770.t1 | MTR_7g072310 | 30.147 | 272 | 162 | 10 | 53 | 309 | 15 | 273 | 1.73e-30 | 124 |
| MS.gene21770.t1 | MTR_3g097280 | 28.195 | 266 | 178 | 9 | 50 | 309 | 4 | 262 | 6.61e-18 | 85.9 |
| MS.gene21770.t1 | MTR_8g095280 | 26.217 | 267 | 182 | 8 | 51 | 309 | 5 | 264 | 1.22e-16 | 81.6 |
| MS.gene21770.t1 | MTR_8g099600 | 52.308 | 65 | 31 | 0 | 67 | 131 | 1 | 65 | 1.13e-15 | 71.6 |
| MS.gene21770.t1 | MTR_7g072310 | 26.168 | 214 | 130 | 10 | 111 | 309 | 1 | 201 | 1.16e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21770.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21770.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21770.t1 | AT5G16880 | 70.073 | 411 | 107 | 6 | 1 | 399 | 1 | 407 | 0.0 | 539 |
| MS.gene21770.t1 | AT5G16880 | 77.003 | 287 | 60 | 2 | 1 | 282 | 1 | 286 | 4.57e-162 | 457 |
| MS.gene21770.t1 | AT1G06210 | 40.705 | 312 | 161 | 7 | 8 | 306 | 5 | 305 | 2.08e-70 | 226 |
| MS.gene21770.t1 | AT1G06210 | 40.392 | 255 | 128 | 7 | 8 | 249 | 5 | 248 | 2.25e-50 | 171 |
| MS.gene21770.t1 | AT4G32760 | 34.545 | 275 | 157 | 11 | 48 | 309 | 2 | 266 | 2.19e-39 | 147 |
| MS.gene21770.t1 | AT4G32760 | 34.307 | 274 | 159 | 10 | 48 | 309 | 2 | 266 | 7.98e-39 | 147 |
| MS.gene21770.t1 | AT4G32760 | 34.307 | 274 | 159 | 10 | 48 | 309 | 2 | 266 | 8.68e-39 | 147 |
| MS.gene21770.t1 | AT1G21380 | 31.502 | 273 | 167 | 9 | 46 | 308 | 3 | 265 | 3.96e-33 | 130 |
| MS.gene21770.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21770.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21770.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21770.t1 | AT1G76970 | 32.714 | 269 | 163 | 9 | 46 | 309 | 3 | 258 | 8.09e-32 | 125 |
| MS.gene21770.t1 | AT3G08790 | 31.227 | 269 | 169 | 8 | 48 | 309 | 2 | 261 | 5.69e-30 | 122 |
| MS.gene21770.t1 | AT5G01760 | 28.819 | 288 | 176 | 9 | 52 | 321 | 26 | 302 | 2.76e-26 | 110 |
| MS.gene21770.t1 | AT2G38410 | 27.463 | 335 | 187 | 11 | 53 | 335 | 13 | 343 | 7.11e-24 | 104 |
| MS.gene21770.t1 | AT1G76970 | 31.602 | 231 | 140 | 9 | 84 | 309 | 15 | 232 | 2.48e-21 | 95.5 |
| MS.gene21770.t1 | AT1G76970 | 31.602 | 231 | 140 | 9 | 84 | 309 | 15 | 232 | 2.48e-21 | 95.5 |
| MS.gene21770.t1 | AT5G63640 | 25.940 | 266 | 184 | 8 | 51 | 309 | 5 | 264 | 7.53e-17 | 82.4 |
| MS.gene21770.t1 | AT5G63640 | 25.940 | 266 | 184 | 8 | 51 | 309 | 5 | 264 | 7.53e-17 | 82.4 |
| MS.gene21770.t1 | AT1G76970 | 30.055 | 183 | 111 | 8 | 131 | 309 | 1 | 170 | 3.86e-11 | 64.3 |
Find 82 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCTAGGGTTCAGTATT+TGG | 0.146715 | 5.2:-1779074 | MS.gene21770:CDS |
| GAATTTCATCATTAACATTC+AGG | 0.240701 | 5.2:+1776455 | None:intergenic |
| GTTTGAGATCAAGGGGTATT+AGG | 0.265335 | 5.2:-1778026 | MS.gene21770:CDS |
| TATTAGTAGTGCAGCTTAGA+AGG | 0.297112 | 5.2:+1776138 | None:intergenic |
| CTCAAACTGTTGTTAATAAT+AGG | 0.346651 | 5.2:-1778949 | MS.gene21770:CDS |
| GATCGAGGAGGAGTGAAAAT+TGG | 0.348941 | 5.2:+1777973 | None:intergenic |
| TAGGGTTCAGTATTTGGCTT+TGG | 0.352663 | 5.2:-1779068 | MS.gene21770:CDS |
| ACGAGCTTATCGACTTGATT+TGG | 0.353046 | 5.2:+1779229 | None:intergenic |
| GAGTTCTTGATGAGATGGTT+AGG | 0.363153 | 5.2:-1778985 | MS.gene21770:CDS |
| TCAAGGGGTATTAGGTTTCC+TGG | 0.364649 | 5.2:-1778018 | MS.gene21770:CDS |
| TTTGGTTATGATTGAAGCTT+GGG | 0.369449 | 5.2:-1778918 | MS.gene21770:CDS |
| AATGAGTTCAATGAGTTTCA+AGG | 0.404113 | 5.2:-1779272 | MS.gene21770:CDS |
| ATCAGGTTCTTCATGTGCTT+CGG | 0.421422 | 5.2:+1779192 | None:intergenic |
| TAATAATAGGAATAAAGCTT+TGG | 0.426379 | 5.2:-1778936 | MS.gene21770:CDS |
| TCAGCAGGATGTTCCTGTGC+AGG | 0.429125 | 5.2:-1777902 | MS.gene21770:CDS |
| GTTTGCAGAGTTTGAGATCA+AGG | 0.430814 | 5.2:-1778035 | MS.gene21770:intron |
| TGGATCAAGACCTGGTGTCC+AGG | 0.433352 | 5.2:-1776281 | MS.gene21770:CDS |
| ACAGGTATCATAGCTGGTTC+AGG | 0.438254 | 5.2:+1776376 | None:intergenic |
| TCAGGTTGAAGTGGAGCAAC+TGG | 0.438563 | 5.2:+1776394 | None:intergenic |
| TCGTCTGGCTCGACAGCAAC+AGG | 0.445296 | 5.2:+1776358 | None:intergenic |
| GTTATCATCTTCACCGCAAC+AGG | 0.446688 | 5.2:-1777809 | MS.gene21770:CDS |
| CAGCGTATTGTTGAAACTGC+TGG | 0.453044 | 5.2:-1776505 | MS.gene21770:CDS |
| AAAGGTTCTTACCAAGTATG+AGG | 0.458529 | 5.2:-1776431 | MS.gene21770:CDS |
| TCCAGCTGGCTTTCTAATCA+AGG | 0.459682 | 5.2:+1776300 | None:intergenic |
| AGTTCTTGATGAGATGGTTA+GGG | 0.461596 | 5.2:-1778984 | MS.gene21770:CDS |
| AATTTCATCATTAACATTCA+GGG | 0.462722 | 5.2:+1776456 | None:intergenic |
| AGATGACGAGGTGACTCGTC+TGG | 0.467267 | 5.2:+1776343 | None:intergenic |
| CTTTGGTTATGATTGAAGCT+TGG | 0.468467 | 5.2:-1778919 | MS.gene21770:CDS |
| TCGAGATTCATAGCCCAATC+AGG | 0.471193 | 5.2:+1779175 | None:intergenic |
| TGTCATCATTGTTCCCTCCC+TGG | 0.472644 | 5.2:+1776263 | None:intergenic |
| TGTTAATGATGAAATTCTAA+AGG | 0.474583 | 5.2:-1776449 | MS.gene21770:CDS |
| CTATTATTAACAACAGTTTG+AGG | 0.474784 | 5.2:+1778950 | None:intergenic |
| TGGTTTCAACTCCTCATACT+TGG | 0.475462 | 5.2:+1776420 | None:intergenic |
| AAGCACATGAAGAACCTGAT+TGG | 0.475758 | 5.2:-1779189 | MS.gene21770:CDS |
| AGCACATGAAGAACCTGATT+GGG | 0.475868 | 5.2:-1779188 | MS.gene21770:CDS |
| TTGTTCCCTCCCTGGACACC+AGG | 0.478367 | 5.2:+1776271 | None:intergenic |
| GGATCATGATTAAAACTCCT+AGG | 0.482292 | 5.2:-1779087 | MS.gene21770:CDS |
| AGCGTATTGTTGAAACTGCT+GGG | 0.485271 | 5.2:-1776504 | MS.gene21770:CDS |
| TCATCCACATGAGGTGGCTC+TGG | 0.486821 | 5.2:+1777940 | None:intergenic |
| TCATCTTGATGATGCTAAAG+AGG | 0.491881 | 5.2:-1776326 | MS.gene21770:CDS |
| TGAAGTGGAGCAACTGGAGG+TGG | 0.494688 | 5.2:+1776400 | None:intergenic |
| GAAGCTTGGGGAGAGTCTAC+TGG | 0.508336 | 5.2:-1778905 | MS.gene21770:CDS |
| GTAGGTAGAAAAGTAACAGA+AGG | 0.533297 | 5.2:-1779295 | MS.gene21770:CDS |
| CAGCAGGATGTTCCTGTGCA+GGG | 0.534177 | 5.2:-1777901 | MS.gene21770:CDS |
| ACTATTTCTCGCAACATCAA+AGG | 0.544546 | 5.2:+1777852 | None:intergenic |
| ACACCAGGTCTTGATCCAGC+TGG | 0.545281 | 5.2:+1776286 | None:intergenic |
| TGAAAGAGTTCTTGATGAGA+TGG | 0.547601 | 5.2:-1778990 | MS.gene21770:CDS |
| TTTGCAGAGTTTGAGATCAA+GGG | 0.548552 | 5.2:-1778034 | MS.gene21770:intron |
| TGATCCGTGCTATTAAGAAA+CGG | 0.554752 | 5.2:-1779108 | MS.gene21770:CDS |
| ACAGCAACAGGTATCATAGC+TGG | 0.557428 | 5.2:+1776370 | None:intergenic |
| AAAGCCAAATACTGAACCCT+AGG | 0.558286 | 5.2:+1779070 | None:intergenic |
| AAGGTTAAAGAATTCTTCAA+CGG | 0.559253 | 5.2:-1779253 | MS.gene21770:CDS |
| GGATCAAGACCTGGTGTCCA+GGG | 0.564963 | 5.2:-1776280 | MS.gene21770:CDS |
| TGGTCGTGATAATGAAAGCT+TGG | 0.574597 | 5.2:-1777998 | MS.gene21770:CDS |
| TCCTTGATTAGAAAGCCAGC+TGG | 0.580335 | 5.2:-1776301 | MS.gene21770:CDS |
| TATTCCGCGTCAATTTCAGC+AGG | 0.583193 | 5.2:-1777917 | MS.gene21770:CDS |
| GATCATGATTAAAACTCCTA+GGG | 0.584994 | 5.2:-1779086 | MS.gene21770:CDS |
| ATAGCTGGTTCAGGTTGAAG+TGG | 0.593332 | 5.2:+1776385 | None:intergenic |
| AAGCTTTCATTATCACGACC+AGG | 0.599613 | 5.2:+1778000 | None:intergenic |
| TGATCCGTTTCTTAATAGCA+CGG | 0.604913 | 5.2:+1779104 | None:intergenic |
| CAAGACCTGGTGTCCAGGGA+GGG | 0.606209 | 5.2:-1776276 | MS.gene21770:CDS |
| TTGCAGAGTTTGAGATCAAG+GGG | 0.612482 | 5.2:-1778033 | MS.gene21770:intron |
| TGTGCCAGAGCCACCTCATG+TGG | 0.617389 | 5.2:-1777944 | MS.gene21770:CDS |
| AGGGAACAATGATGACATGA+TGG | 0.620276 | 5.2:-1776257 | MS.gene21770:CDS |
| TTATACAGAAGAACAGACAA+AGG | 0.629341 | 5.2:-1777878 | MS.gene21770:CDS |
| CTCATCAAGAACTCTTTCAG+CGG | 0.633474 | 5.2:+1778994 | None:intergenic |
| TCTTCTGTATAACCCTGCAC+AGG | 0.636308 | 5.2:+1777889 | None:intergenic |
| AAGCCAGCTGGATCAAGACC+TGG | 0.644482 | 5.2:-1776289 | MS.gene21770:CDS |
| TCAAGACCTGGTGTCCAGGG+AGG | 0.644753 | 5.2:-1776277 | MS.gene21770:CDS |
| ACGACACTGCTGTACAAGTG+TGG | 0.646490 | 5.2:+1776546 | None:intergenic |
| GGAATATCATCCACATGAGG+TGG | 0.649969 | 5.2:+1777934 | None:intergenic |
| CAGCAGTTTCAACAATACGC+TGG | 0.650943 | 5.2:+1776506 | None:intergenic |
| GGTTGAAGTGGAGCAACTGG+AGG | 0.659537 | 5.2:+1776397 | None:intergenic |
| ACCTGCAAAACATCCTGTTG+CGG | 0.661120 | 5.2:+1777796 | None:intergenic |
| CGCGGAATATCATCCACATG+AGG | 0.664035 | 5.2:+1777931 | None:intergenic |
| GCGTATTGTTGAAACTGCTG+GGG | 0.671775 | 5.2:-1776503 | MS.gene21770:CDS |
| TCTGGCACAGTAGCTGATCG+AGG | 0.677519 | 5.2:+1777958 | None:intergenic |
| TTGGTTATGATTGAAGCTTG+GGG | 0.686489 | 5.2:-1778917 | MS.gene21770:CDS |
| GGCACAGTAGCTGATCGAGG+AGG | 0.687542 | 5.2:+1777961 | None:intergenic |
| ACACTGCTGTACAAGTGTGG+CGG | 0.710445 | 5.2:+1776549 | None:intergenic |
| TTAGCATCATCAAGATGACG+AGG | 0.718165 | 5.2:+1776331 | None:intergenic |
| ACATCCTGCTGAAATTGACG+CGG | 0.718477 | 5.2:+1777913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAAAAAAAAAAA+AGG | + | chr5.2:1776681-1776700 | None:intergenic | 10.0% |
| !!! | TAAAATATAGTTTTGAAAAT+TGG | - | chr5.2:1778370-1778389 | MS.gene21770:intron | 10.0% |
| !! | ATTATATGGGATATAATAAT+GGG | - | chr5.2:1778577-1778596 | MS.gene21770:intron | 15.0% |
| !! | TTATACATATTCTAATGTTT+GGG | - | chr5.2:1778285-1778304 | MS.gene21770:intron | 15.0% |
| !!! | CTATATTTTCAAATTATTAC+CGG | + | chr5.2:1777232-1777251 | None:intergenic | 15.0% |
| !! | AATTTCATCATTAACATTCA+GGG | + | chr5.2:1779061-1779080 | None:intergenic | 20.0% |
| !! | ATTATCAGTCAATTTCAAAT+CGG | - | chr5.2:1778694-1778713 | MS.gene21770:intron | 20.0% |
| !! | GATTATATGGGATATAATAA+TGG | - | chr5.2:1778576-1778595 | MS.gene21770:intron | 20.0% |
| !! | GTTATACATATTCTAATGTT+TGG | - | chr5.2:1778284-1778303 | MS.gene21770:intron | 20.0% |
| !! | TAATAATAGGAATAAAGCTT+TGG | - | chr5.2:1776578-1776597 | MS.gene21770:intron | 20.0% |
| !! | TGTTAATGATGAAATTCTAA+AGG | - | chr5.2:1779065-1779084 | MS.gene21770:CDS | 20.0% |
| !!! | AGCTAATGTAGATTTTTTTT+TGG | - | chr5.2:1778469-1778488 | MS.gene21770:intron | 20.0% |
| !!! | AGTGAAATTGATATTTTCTA+TGG | - | chr5.2:1778416-1778435 | MS.gene21770:intron | 20.0% |
| !!! | ATCTTGATGAAATGATTTTT+GGG | - | chr5.2:1779283-1779302 | MS.gene21770:CDS | 20.0% |
| !!! | ATGTGCTATTTATACTTAAT+TGG | - | chr5.2:1778620-1778639 | MS.gene21770:intron | 20.0% |
| !!! | GTGAAATTGATATTTTCTAT+GGG | - | chr5.2:1778417-1778436 | MS.gene21770:intron | 20.0% |
| !!! | TGATGATTTTGAAACAATTT+TGG | - | chr5.2:1777096-1777115 | MS.gene21770:intron | 20.0% |
| !!! | TTTATATGGGTTGATTATAT+GGG | - | chr5.2:1778564-1778583 | MS.gene21770:intron | 20.0% |
| ! | AAGGTTAAAGAATTCTTCAA+CGG | - | chr5.2:1776261-1776280 | MS.gene21770:CDS | 25.0% |
| ! | AATGAGGAATACATAAATCT+TGG | - | chr5.2:1778846-1778865 | MS.gene21770:intron | 25.0% |
| ! | AATTCACTTTCTTTAGATTC+TGG | - | chr5.2:1778495-1778514 | MS.gene21770:intron | 25.0% |
| ! | AGATTTATGTATTCCTCATT+TGG | + | chr5.2:1778846-1778865 | None:intergenic | 25.0% |
| ! | CTATTATTAACAACAGTTTG+AGG | + | chr5.2:1776567-1776586 | None:intergenic | 25.0% |
| ! | CTCAAACTGTTGTTAATAAT+AGG | - | chr5.2:1776565-1776584 | MS.gene21770:intron | 25.0% |
| ! | GAATTTCATCATTAACATTC+AGG | + | chr5.2:1779062-1779081 | None:intergenic | 25.0% |
| ! | GATTTATGTATTCCTCATTT+GGG | + | chr5.2:1778845-1778864 | None:intergenic | 25.0% |
| ! | TCCATAAAACAAGTAAAACA+GGG | - | chr5.2:1778084-1778103 | MS.gene21770:intron | 25.0% |
| ! | TGGAAATAAAGATCACATTT+AGG | + | chr5.2:1778928-1778947 | None:intergenic | 25.0% |
| ! | TTATAGGTTTCTTCAAAAAC+AGG | + | chr5.2:1776651-1776670 | None:intergenic | 25.0% |
| ! | TTCCATAAAACAAGTAAAAC+AGG | - | chr5.2:1778083-1778102 | MS.gene21770:intron | 25.0% |
| !! | AAACAATTTTCCATTTTGGA+AGG | + | chr5.2:1778791-1778810 | None:intergenic | 25.0% |
| !! | GATCTTGATGAAATGATTTT+TGG | - | chr5.2:1779282-1779301 | MS.gene21770:CDS | 25.0% |
| !! | TAATGAAGCAATTCTTTTTG+AGG | - | chr5.2:1779035-1779054 | MS.gene21770:CDS | 25.0% |
| !! | TACGAAACAATTTTCCATTT+TGG | + | chr5.2:1778795-1778814 | None:intergenic | 25.0% |
| !! | TATTCTAATGTTTGGGTTAT+TGG | - | chr5.2:1778292-1778311 | MS.gene21770:intron | 25.0% |
| !! | TTTGATGCACTCTTTTTATT+TGG | - | chr5.2:1777800-1777819 | MS.gene21770:CDS | 25.0% |
| !! | TTTTCACAACTAAACATAGT+AGG | + | chr5.2:1778669-1778688 | None:intergenic | 25.0% |
| !!! | AACAATTTTCCATTTTGGAA+GGG | + | chr5.2:1778790-1778809 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTCTTTGTTTTTA+GGG | - | chr5.2:1777913-1777932 | MS.gene21770:CDS | 25.0% |
| !!! | GTTTATATGGGTTGATTATA+TGG | - | chr5.2:1778563-1778582 | MS.gene21770:intron | 25.0% |
| !!! | TGGTTTTTGTCTTTGTTTTT+AGG | - | chr5.2:1777912-1777931 | MS.gene21770:CDS | 25.0% |
| !!! | TGTTTTTGAAGAAACCTATA+AGG | - | chr5.2:1776650-1776669 | MS.gene21770:intron | 25.0% |
| !!! | TTTGTTTTTAGGGATTGTTT+AGG | - | chr5.2:1777923-1777942 | MS.gene21770:CDS | 25.0% |
| AAAAAAAGGAACCACCTTAT+AGG | + | chr5.2:1776667-1776686 | None:intergenic | 30.0% | |
| AAAACAAAGACAAAAACCAC+AGG | + | chr5.2:1777911-1777930 | None:intergenic | 30.0% | |
| AATGAGTTCAATGAGTTTCA+AGG | - | chr5.2:1776242-1776261 | MS.gene21770:CDS | 30.0% | |
| ATATAAATCTCTCGAGCAAA+GGG | - | chr5.2:1778150-1778169 | MS.gene21770:intron | 30.0% | |
| CTAAGATAGTAACTTGATCA+CGG | - | chr5.2:1778734-1778753 | MS.gene21770:intron | 30.0% | |
| GAATGTACAGAAATCATACA+AGG | + | chr5.2:1778760-1778779 | None:intergenic | 30.0% | |
| GATCATGATTAAAACTCCTA+GGG | - | chr5.2:1776428-1776447 | MS.gene21770:CDS | 30.0% | |
| TATATAAATCTCTCGAGCAA+AGG | - | chr5.2:1778149-1778168 | MS.gene21770:intron | 30.0% | |
| TTATACAGAAGAACAGACAA+AGG | - | chr5.2:1777636-1777655 | MS.gene21770:intron | 30.0% | |
| TTCGGTGAAAAGCTAAAAAT+CGG | - | chr5.2:1776186-1776205 | MS.gene21770:CDS | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | - | chr5.2:1776843-1776862 | MS.gene21770:intron | 30.0% | |
| TTTGGTTATGATTGAAGCTT+GGG | - | chr5.2:1776596-1776615 | MS.gene21770:intron | 30.0% | |
| ! | ATGGTTGGGTATTGTTTATA+TGG | - | chr5.2:1778550-1778569 | MS.gene21770:intron | 30.0% |
| ! | GGTATATAACTTTAGAGGAA+GGG | - | chr5.2:1777978-1777997 | MS.gene21770:CDS | 30.0% |
| ! | TAAAAAGAGTGCATCAAACA+CGG | + | chr5.2:1777798-1777817 | None:intergenic | 30.0% |
| ! | TGATCTTTATTTCCATCTAC+AGG | - | chr5.2:1778933-1778952 | MS.gene21770:CDS | 30.0% |
| ! | TGGTTGGGTATTGTTTATAT+GGG | - | chr5.2:1778551-1778570 | MS.gene21770:intron | 30.0% |
| !! | ATGATTTTTGGGAGTAAAGT+TGG | - | chr5.2:1779294-1779313 | MS.gene21770:CDS | 30.0% |
| !! | TGATTTTTGGGAGTAAAGTT+GGG | - | chr5.2:1779295-1779314 | MS.gene21770:CDS | 30.0% |
| !! | TTTTGAAGAAACCTATAAGG+TGG | - | chr5.2:1776653-1776672 | MS.gene21770:intron | 30.0% |
| !!! | ACCCTGTTTTACTTGTTTTA+TGG | + | chr5.2:1778088-1778107 | None:intergenic | 30.0% |
| AAAGGTTCTTACCAAGTATG+AGG | - | chr5.2:1779083-1779102 | MS.gene21770:CDS | 35.0% | |
| AATATGCTCATTCCCTAACA+TGG | + | chr5.2:1778884-1778903 | None:intergenic | 35.0% | |
| AGTAGGATAAGTTCTTCTGT+GGG | + | chr5.2:1778652-1778671 | None:intergenic | 35.0% | |
| AGTTCTTGATGAGATGGTTA+GGG | - | chr5.2:1776530-1776549 | MS.gene21770:CDS | 35.0% | |
| ATGGAAAAAGTGAACGCATT+CGG | - | chr5.2:1776168-1776187 | MS.gene21770:CDS | 35.0% | |
| ATGGAATTCCCTAAAATCAG+AGG | + | chr5.2:1778069-1778088 | None:intergenic | 35.0% | |
| ATTGTTTAGGAGTTGGGATA+TGG | - | chr5.2:1777936-1777955 | MS.gene21770:CDS | 35.0% | |
| CTCGAGAGATTTATATAGTG+GGG | + | chr5.2:1778146-1778165 | None:intergenic | 35.0% | |
| CTTGTTAGCAGTTGTTTATG+AGG | - | chr5.2:1777444-1777463 | MS.gene21770:intron | 35.0% | |
| CTTTGGTTATGATTGAAGCT+TGG | - | chr5.2:1776595-1776614 | MS.gene21770:intron | 35.0% | |
| GCTCGAGAGATTTATATAGT+GGG | + | chr5.2:1778147-1778166 | None:intergenic | 35.0% | |
| GGATCATGATTAAAACTCCT+AGG | - | chr5.2:1776427-1776446 | MS.gene21770:CDS | 35.0% | |
| GGGTTATTGGACTATTTACA+GGG | - | chr5.2:1778305-1778324 | MS.gene21770:intron | 35.0% | |
| GTAGGTAGAAAAGTAACAGA+AGG | - | chr5.2:1776219-1776238 | MS.gene21770:CDS | 35.0% | |
| TAACAACCTCTATACACTTC+TGG | + | chr5.2:1776911-1776930 | None:intergenic | 35.0% | |
| TAGTAGGATAAGTTCTTCTG+TGG | + | chr5.2:1778653-1778672 | None:intergenic | 35.0% | |
| TCGGTGAAAAGCTAAAAATC+GGG | - | chr5.2:1776187-1776206 | MS.gene21770:CDS | 35.0% | |
| TCTCTCAACTATCTCAAAAG+AGG | + | chr5.2:1778397-1778416 | None:intergenic | 35.0% | |
| TGAAAGAGTTCTTGATGAGA+TGG | - | chr5.2:1776524-1776543 | MS.gene21770:CDS | 35.0% | |
| TGAAGTAGAATGTTGTGTTG+CGG | - | chr5.2:1777830-1777849 | MS.gene21770:CDS | 35.0% | |
| TGATCCGTTTCTTAATAGCA+CGG | + | chr5.2:1776413-1776432 | None:intergenic | 35.0% | |
| TGCTCGAGAGATTTATATAG+TGG | + | chr5.2:1778148-1778167 | None:intergenic | 35.0% | |
| TGGAATTCCCTAAAATCAGA+GGG | + | chr5.2:1778068-1778087 | None:intergenic | 35.0% | |
| TGGACTATTTACAGGGTTAT+TGG | - | chr5.2:1778312-1778331 | MS.gene21770:intron | 35.0% | |
| TGGGTTATTGGACTATTTAC+AGG | - | chr5.2:1778304-1778323 | MS.gene21770:intron | 35.0% | |
| TTAGGGATTGTTTAGGAGTT+GGG | - | chr5.2:1777930-1777949 | MS.gene21770:CDS | 35.0% | |
| TTGGTTATGATTGAAGCTTG+GGG | - | chr5.2:1776597-1776616 | MS.gene21770:intron | 35.0% | |
| TTGTTTAGGAGTTGGGATAT+GGG | - | chr5.2:1777937-1777956 | MS.gene21770:CDS | 35.0% | |
| TTTAGGGATTGTTTAGGAGT+TGG | - | chr5.2:1777929-1777948 | MS.gene21770:CDS | 35.0% | |
| ! | ACTATTTCTCGCAACATCAA+AGG | + | chr5.2:1777665-1777684 | None:intergenic | 35.0% |
| ! | ATAACTTTAGAGGAAGGGAA+GGG | - | chr5.2:1777983-1778002 | MS.gene21770:CDS | 35.0% |
| ! | GGAAGGGTATATAACTTTAG+AGG | - | chr5.2:1777973-1777992 | MS.gene21770:CDS | 35.0% |
| ! | GGGTATATAACTTTAGAGGA+AGG | - | chr5.2:1777977-1777996 | MS.gene21770:CDS | 35.0% |
| ! | TATAACTTTAGAGGAAGGGA+AGG | - | chr5.2:1777982-1778001 | MS.gene21770:CDS | 35.0% |
| ! | TCAAAACCCCTCTGATTTTA+GGG | - | chr5.2:1778058-1778077 | MS.gene21770:intron | 35.0% |
| ! | TGATCCGTGCTATTAAGAAA+CGG | - | chr5.2:1776406-1776425 | MS.gene21770:CDS | 35.0% |
| ! | TGTCCTTCTATTAGAAGTGT+CGG | - | chr5.2:1777017-1777036 | MS.gene21770:intron | 35.0% |
| ! | TTTGCAGAGTTTGAGATCAA+GGG | - | chr5.2:1777480-1777499 | MS.gene21770:intron | 35.0% |
| !! | AATTTTCCATTTTGGAAGGG+TGG | + | chr5.2:1778787-1778806 | None:intergenic | 35.0% |
| !! | ATTTTTGGGAGTAAAGTTGG+GGG | - | chr5.2:1779297-1779316 | MS.gene21770:CDS | 35.0% |
| !! | GATTTTTGGGAGTAAAGTTG+GGG | - | chr5.2:1779296-1779315 | MS.gene21770:CDS | 35.0% |
| !! | TCATCTTGATGATGCTAAAG+AGG | - | chr5.2:1779188-1779207 | MS.gene21770:CDS | 35.0% |
| AAAAAGGGGAAGGGAAAAAG+AGG | - | chr5.2:1778006-1778025 | MS.gene21770:CDS | 40.0% | |
| AAAGCCAAATACTGAACCCT+AGG | + | chr5.2:1776447-1776466 | None:intergenic | 40.0% | |
| AACATGTGTTAGTGTCGTGT+CGG | - | chr5.2:1777268-1777287 | MS.gene21770:intron | 40.0% | |
| AACTCCTAGGGTTCAGTATT+TGG | - | chr5.2:1776440-1776459 | MS.gene21770:CDS | 40.0% | |
| AAGCACATGAAGAACCTGAT+TGG | - | chr5.2:1776325-1776344 | MS.gene21770:CDS | 40.0% | |
| AAGCTTTCATTATCACGACC+AGG | + | chr5.2:1777517-1777536 | None:intergenic | 40.0% | |
| AGCACATGAAGAACCTGATT+GGG | - | chr5.2:1776326-1776345 | MS.gene21770:CDS | 40.0% | |
| AGCGTATTGTTGAAACTGCT+GGG | - | chr5.2:1779010-1779029 | MS.gene21770:CDS | 40.0% | |
| AGGGAACAATGATGACATGA+TGG | - | chr5.2:1779257-1779276 | MS.gene21770:CDS | 40.0% | |
| ATCAGGTTCTTCATGTGCTT+CGG | + | chr5.2:1776325-1776344 | None:intergenic | 40.0% | |
| CATATACCAAAGGCTATGTC+GGG | + | chr5.2:1778217-1778236 | None:intergenic | 40.0% | |
| CCAGTCAATGTTCCATGTTA+GGG | - | chr5.2:1778869-1778888 | MS.gene21770:CDS | 40.0% | |
| CGGTGAAAAGCTAAAAATCG+GGG | - | chr5.2:1776188-1776207 | MS.gene21770:CDS | 40.0% | |
| CTCATCAAGAACTCTTTCAG+CGG | + | chr5.2:1776523-1776542 | None:intergenic | 40.0% | |
| GACCACAATAAGACATGGTT+GGG | - | chr5.2:1778536-1778555 | MS.gene21770:intron | 40.0% | |
| GAGTTCTTGATGAGATGGTT+AGG | - | chr5.2:1776529-1776548 | MS.gene21770:CDS | 40.0% | |
| GATATGGGAGGGAAATAGAA+TGG | - | chr5.2:1777952-1777971 | MS.gene21770:CDS | 40.0% | |
| GCATATACCAAAGGCTATGT+CGG | + | chr5.2:1778218-1778237 | None:intergenic | 40.0% | |
| GGAATTCCCTAAAATCAGAG+GGG | + | chr5.2:1778067-1778086 | None:intergenic | 40.0% | |
| GGTGAAAAGCTAAAAATCGG+GGG | - | chr5.2:1776189-1776208 | MS.gene21770:CDS | 40.0% | |
| TAGCCTTTGGTATATGCACT+TGG | - | chr5.2:1778221-1778240 | MS.gene21770:intron | 40.0% | |
| TGACCACAATAAGACATGGT+TGG | - | chr5.2:1778535-1778554 | MS.gene21770:intron | 40.0% | |
| TGGTTTCAACTCCTCATACT+TGG | + | chr5.2:1779097-1779116 | None:intergenic | 40.0% | |
| TTAGCATCATCAAGATGACG+AGG | + | chr5.2:1779186-1779205 | None:intergenic | 40.0% | |
| ! | ACCATGTCTTATTGTGGTCA+AGG | + | chr5.2:1778535-1778554 | None:intergenic | 40.0% |
| ! | ATATAGTGGGGAGTAGTGTT+TGG | + | chr5.2:1778134-1778153 | None:intergenic | 40.0% |
| ! | CATGTCTTATTGTGGTCAAG+GGG | + | chr5.2:1778533-1778552 | None:intergenic | 40.0% |
| ! | CCATGTCTTATTGTGGTCAA+GGG | + | chr5.2:1778534-1778553 | None:intergenic | 40.0% |
| ! | GTCAAAACCCCTCTGATTTT+AGG | - | chr5.2:1778057-1778076 | MS.gene21770:intron | 40.0% |
| ! | GTTTGCAGAGTTTGAGATCA+AGG | - | chr5.2:1777479-1777498 | MS.gene21770:intron | 40.0% |
| ! | TACCCAACCATGTCTTATTG+TGG | + | chr5.2:1778541-1778560 | None:intergenic | 40.0% |
| ! | TAGGGTTCAGTATTTGGCTT+TGG | - | chr5.2:1776446-1776465 | MS.gene21770:CDS | 40.0% |
| ! | TATAGTGGGGAGTAGTGTTT+GGG | + | chr5.2:1778133-1778152 | None:intergenic | 40.0% |
| ! | TGGTCGTGATAATGAAAGCT+TGG | - | chr5.2:1777516-1777535 | MS.gene21770:intron | 40.0% |
| ! | TTGCAGAGTTTGAGATCAAG+GGG | - | chr5.2:1777481-1777500 | MS.gene21770:intron | 40.0% |
| ! | TTGCGAGAGGCATATAGTTA+TGG | + | chr5.2:1778185-1778204 | None:intergenic | 40.0% |
| !! | ACGAGCTTATCGACTTGATT+TGG | + | chr5.2:1776288-1776307 | None:intergenic | 40.0% |
| !! | GTTTGAGATCAAGGGGTATT+AGG | - | chr5.2:1777488-1777507 | MS.gene21770:intron | 40.0% |
| !! | TAACTATGAAGCACTGACAC+AGG | - | chr5.2:1777171-1777190 | MS.gene21770:intron | 40.0% |
| !! | TATTAGAAGTGTCGGTGCTA+TGG | - | chr5.2:1777025-1777044 | MS.gene21770:intron | 40.0% |
| ACAGCAACAGGTATCATAGC+TGG | + | chr5.2:1779147-1779166 | None:intergenic | 45.0% | |
| ACATCCTGCTGAAATTGACG+CGG | + | chr5.2:1777604-1777623 | None:intergenic | 45.0% | |
| ACCTGCAAAACATCCTGTTG+CGG | + | chr5.2:1777721-1777740 | None:intergenic | 45.0% | |
| AGAGGAAGGGAAGGGAAAAA+GGG | - | chr5.2:1777991-1778010 | MS.gene21770:CDS | 45.0% | |
| CACTGACACATGTTGGACAT+CGG | - | chr5.2:1776873-1776892 | MS.gene21770:intron | 45.0% | |
| CAGCAGTTTCAACAATACGC+TGG | + | chr5.2:1779011-1779030 | None:intergenic | 45.0% | |
| CAGCGTATTGTTGAAACTGC+TGG | - | chr5.2:1779009-1779028 | MS.gene21770:CDS | 45.0% | |
| CCCTAACATGGAACATTGAC+TGG | + | chr5.2:1778872-1778891 | None:intergenic | 45.0% | |
| CCCTTGACCACAATAAGACA+TGG | - | chr5.2:1778531-1778550 | MS.gene21770:intron | 45.0% | |
| CCTCATTTGGGAAGCTTACA+AGG | + | chr5.2:1778833-1778852 | None:intergenic | 45.0% | |
| CCTTGTAAGCTTCCCAAATG+AGG | - | chr5.2:1778830-1778849 | MS.gene21770:intron | 45.0% | |
| CGGTCAAATCATCCTGTAGA+TGG | + | chr5.2:1778948-1778967 | None:intergenic | 45.0% | |
| CTCTATACACTTCTGGTCGA+AGG | + | chr5.2:1776904-1776923 | None:intergenic | 45.0% | |
| CTGCCAAGTGCATATACCAA+AGG | + | chr5.2:1778227-1778246 | None:intergenic | 45.0% | |
| GATCGAGGAGGAGTGAAAAT+TGG | + | chr5.2:1777544-1777563 | None:intergenic | 45.0% | |
| GCCAGTCAATGTTCCATGTT+AGG | - | chr5.2:1778868-1778887 | MS.gene21770:CDS | 45.0% | |
| GCGTATTGTTGAAACTGCTG+GGG | - | chr5.2:1779011-1779030 | MS.gene21770:CDS | 45.0% | |
| GGAATATCATCCACATGAGG+TGG | + | chr5.2:1777583-1777602 | None:intergenic | 45.0% | |
| GGGAATGAGCATATTGTACC+AGG | - | chr5.2:1778889-1778908 | MS.gene21770:CDS | 45.0% | |
| GGGAGGGAAATAGAATGGAA+GGG | - | chr5.2:1777957-1777976 | MS.gene21770:CDS | 45.0% | |
| GTTATCATCTTCACCGCAAC+AGG | - | chr5.2:1777705-1777724 | MS.gene21770:intron | 45.0% | |
| GTTGTGTTGCGGATAGATCA+TGG | - | chr5.2:1777841-1777860 | MS.gene21770:CDS | 45.0% | |
| TAGAGGAAGGGAAGGGAAAA+AGG | - | chr5.2:1777990-1778009 | MS.gene21770:CDS | 45.0% | |
| TAGCTATGAAGCACAGACAC+TGG | - | chr5.2:1776782-1776801 | MS.gene21770:intron | 45.0% | |
| TATTCCGCGTCAATTTCAGC+AGG | - | chr5.2:1777597-1777616 | MS.gene21770:intron | 45.0% | |
| TCATCTCCACCCTTCCAAAA+TGG | - | chr5.2:1778778-1778797 | MS.gene21770:intron | 45.0% | |
| TCCTTGATTAGAAAGCCAGC+TGG | - | chr5.2:1779213-1779232 | MS.gene21770:CDS | 45.0% | |
| TCGAGATTCATAGCCCAATC+AGG | + | chr5.2:1776342-1776361 | None:intergenic | 45.0% | |
| TCTTCTGTATAACCCTGCAC+AGG | + | chr5.2:1777628-1777647 | None:intergenic | 45.0% | |
| TGGGAGGGAAATAGAATGGA+AGG | - | chr5.2:1777956-1777975 | MS.gene21770:CDS | 45.0% | |
| TGTTGCGGATAGATCATGGT+AGG | - | chr5.2:1777845-1777864 | MS.gene21770:CDS | 45.0% | |
| TGTTGGACACTGACACATGT+TGG | - | chr5.2:1776866-1776885 | MS.gene21770:intron | 45.0% | |
| TTAGGAGTTGGGATATGGGA+GGG | - | chr5.2:1777941-1777960 | MS.gene21770:CDS | 45.0% | |
| TTAGGTAACTCACAGATGCC+TGG | + | chr5.2:1778910-1778929 | None:intergenic | 45.0% | |
| TTGGTATATGCACTTGGCAG+AGG | - | chr5.2:1778227-1778246 | MS.gene21770:intron | 45.0% | |
| TTTAGGAGTTGGGATATGGG+AGG | - | chr5.2:1777940-1777959 | MS.gene21770:CDS | 45.0% | |
| ! | AAAATCGGGGGTGTAGAAGT+AGG | - | chr5.2:1776201-1776220 | MS.gene21770:CDS | 45.0% |
| ! | ACAGGTATCATAGCTGGTTC+AGG | + | chr5.2:1779141-1779160 | None:intergenic | 45.0% |
| ! | ATTGACCGCGACAACTGTTT+TGG | - | chr5.2:1777885-1777904 | MS.gene21770:CDS | 45.0% |
| ! | CTTCGACCAGAAGTGTATAG+AGG | - | chr5.2:1776902-1776921 | MS.gene21770:intron | 45.0% |
| ! | GCACCGACACTTCTAATAGA+AGG | + | chr5.2:1777023-1777042 | None:intergenic | 45.0% |
| ! | GTAATCACATGTGTCGGTGT+TGG | - | chr5.2:1776849-1776868 | MS.gene21770:intron | 45.0% |
| !! | ATAGCTGGTTCAGGTTGAAG+TGG | + | chr5.2:1779132-1779151 | None:intergenic | 45.0% |
| !! | TCAAGGGGTATTAGGTTTCC+TGG | - | chr5.2:1777496-1777515 | MS.gene21770:intron | 45.0% |
| !! | TCCAGCTGGCTTTCTAATCA+AGG | + | chr5.2:1779217-1779236 | None:intergenic | 45.0% |
| !!! | GGGGTTTTGACTTGCAAACA+AGG | + | chr5.2:1778048-1778067 | None:intergenic | 45.0% |
| AAGGGAAGGGAAAAAGGGGA+AGG | - | chr5.2:1777996-1778015 | MS.gene21770:CDS | 50.0% | |
| ACACTGCTGTACAAGTGTGG+CGG | + | chr5.2:1778968-1778987 | None:intergenic | 50.0% | |
| ACAGGCCAAAACAGTTGTCG+CGG | + | chr5.2:1777893-1777912 | None:intergenic | 50.0% | |
| ACGACACTGCTGTACAAGTG+TGG | + | chr5.2:1778971-1778990 | None:intergenic | 50.0% | |
| AGACGTGTCAGTGTCATGTC+TGG | + | chr5.2:1777206-1777225 | None:intergenic | 50.0% | |
| AGGGAAGGGAAAAAGGGGAA+GGG | - | chr5.2:1777997-1778016 | MS.gene21770:CDS | 50.0% | |
| AGGGGAAGGGAAAAAGAGGA+AGG | - | chr5.2:1778010-1778029 | MS.gene21770:CDS | 50.0% | |
| CGCGGAATATCATCCACATG+AGG | + | chr5.2:1777586-1777605 | None:intergenic | 50.0% | |
| GAGGAAGGGAAGGGAAAAAG+GGG | - | chr5.2:1777992-1778011 | MS.gene21770:CDS | 50.0% | |
| GGGGAAGGGAAAAAGAGGAA+GGG | - | chr5.2:1778011-1778030 | MS.gene21770:CDS | 50.0% | |
| TGACACTGACACGTCTACAC+CGG | - | chr5.2:1777210-1777229 | MS.gene21770:intron | 50.0% | |
| TGTCATCATTGTTCCCTCCC+TGG | + | chr5.2:1779254-1779273 | None:intergenic | 50.0% | |
| ! | ACCGCAACAGGATGTTTTGC+AGG | - | chr5.2:1777717-1777736 | MS.gene21770:intron | 50.0% |
| !! | TAGAAGTGTCGGTGCTATGG+AGG | - | chr5.2:1777028-1777047 | MS.gene21770:intron | 50.0% |
| !! | TCAGGTTGAAGTGGAGCAAC+TGG | + | chr5.2:1779123-1779142 | None:intergenic | 50.0% |
| AAAGGCTATGTCGGGCGAAG+GGG | + | chr5.2:1778209-1778228 | None:intergenic | 55.0% | |
| AAGCCAGCTGGATCAAGACC+TGG | - | chr5.2:1779225-1779244 | MS.gene21770:CDS | 55.0% | |
| ACACCAGGTCTTGATCCAGC+TGG | + | chr5.2:1779231-1779250 | None:intergenic | 55.0% | |
| AGATGACGAGGTGACTCGTC+TGG | + | chr5.2:1779174-1779193 | None:intergenic | 55.0% | |
| CAAAGGCTATGTCGGGCGAA+GGG | + | chr5.2:1778210-1778229 | None:intergenic | 55.0% | |
| CAGCAGGATGTTCCTGTGCA+GGG | - | chr5.2:1777613-1777632 | MS.gene21770:intron | 55.0% | |
| GAAGCTTGGGGAGAGTCTAC+TGG | - | chr5.2:1776609-1776628 | MS.gene21770:intron | 55.0% | |
| GGATCAAGACCTGGTGTCCA+GGG | - | chr5.2:1779234-1779253 | MS.gene21770:CDS | 55.0% | |
| GGTTGAAGTGGAGCAACTGG+AGG | + | chr5.2:1779120-1779139 | None:intergenic | 55.0% | |
| GTTAGTGTCGTGTCGGACAC+TGG | - | chr5.2:1777275-1777294 | MS.gene21770:intron | 55.0% | |
| TCAGCAGGATGTTCCTGTGC+AGG | - | chr5.2:1777612-1777631 | MS.gene21770:intron | 55.0% | |
| TCAGTGTCATGTCTGGTGCC+TGG | + | chr5.2:1777199-1777218 | None:intergenic | 55.0% | |
| TCATCCACATGAGGTGGCTC+TGG | + | chr5.2:1777577-1777596 | None:intergenic | 55.0% | |
| TCTGGCACAGTAGCTGATCG+AGG | + | chr5.2:1777559-1777578 | None:intergenic | 55.0% | |
| TGAAGTGGAGCAACTGGAGG+TGG | + | chr5.2:1779117-1779136 | None:intergenic | 55.0% | |
| TGGATCAAGACCTGGTGTCC+AGG | - | chr5.2:1779233-1779252 | MS.gene21770:CDS | 55.0% | |
| ! | AAAGTTGGGGGCGCATCAGA+TGG | - | chr5.2:1779309-1779328 | MS.gene21770:CDS | 55.0% |
| !!! | GCGACAACTGTTTTGGCCTG+TGG | - | chr5.2:1777892-1777911 | MS.gene21770:CDS | 55.0% |
| AAGGCTATGTCGGGCGAAGG+GGG | + | chr5.2:1778208-1778227 | None:intergenic | 60.0% | |
| CAAGACCTGGTGTCCAGGGA+GGG | - | chr5.2:1779238-1779257 | MS.gene21770:CDS | 60.0% | |
| CCAAAGGCTATGTCGGGCGA+AGG | + | chr5.2:1778211-1778230 | None:intergenic | 60.0% | |
| CCTTCGCCCGACATAGCCTT+TGG | - | chr5.2:1778208-1778227 | MS.gene21770:intron | 60.0% | |
| GGCACAGTAGCTGATCGAGG+AGG | + | chr5.2:1777556-1777575 | None:intergenic | 60.0% | |
| TCAAGACCTGGTGTCCAGGG+AGG | - | chr5.2:1779237-1779256 | MS.gene21770:CDS | 60.0% | |
| TGTGCCAGAGCCACCTCATG+TGG | - | chr5.2:1777570-1777589 | MS.gene21770:intron | 60.0% | |
| TTGTTCCCTCCCTGGACACC+AGG | + | chr5.2:1779246-1779265 | None:intergenic | 60.0% | |
| ! | TCGTCTGGCTCGACAGCAAC+AGG | + | chr5.2:1779159-1779178 | None:intergenic | 60.0% |
| !! | GAAGCACTGACACAGGCACC+AGG | - | chr5.2:1777178-1777197 | MS.gene21770:intron | 60.0% |
| ! | GTTGGGGGCGCATCAGATGG+AGG | - | chr5.2:1779312-1779331 | MS.gene21770:CDS | 65.0% |
| CGGGCGAAGGGGGTTGCGAG+AGG | + | chr5.2:1778198-1778217 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1776153 | 1779383 | 1776153 | ID=MS.gene21770 |
| chr5.2 | mRNA | 1776153 | 1779383 | 1776153 | ID=MS.gene21770.t1;Parent=MS.gene21770 |
| chr5.2 | exon | 1778865 | 1779383 | 1778865 | ID=MS.gene21770.t1.exon1;Parent=MS.gene21770.t1 |
| chr5.2 | CDS | 1778865 | 1779383 | 1778865 | ID=cds.MS.gene21770.t1;Parent=MS.gene21770.t1 |
| chr5.2 | exon | 1777798 | 1778049 | 1777798 | ID=MS.gene21770.t1.exon2;Parent=MS.gene21770.t1 |
| chr5.2 | CDS | 1777798 | 1778049 | 1777798 | ID=cds.MS.gene21770.t1;Parent=MS.gene21770.t1 |
| chr5.2 | exon | 1776153 | 1776581 | 1776153 | ID=MS.gene21770.t1.exon3;Parent=MS.gene21770.t1 |
| chr5.2 | CDS | 1776153 | 1776581 | 1776153 | ID=cds.MS.gene21770.t1;Parent=MS.gene21770.t1 |
| Gene Sequence |
| Protein sequence |
