Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28198.t1 | PNX87313.1 | 46.2 | 292 | 75 | 3 | 65 | 274 | 130 | 421 | 5.30E-56 | 228 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28198.t1 | A0A2K3M978 | 46.2 | 292 | 75 | 3 | 65 | 274 | 130 | 421 | 3.8e-56 | 228.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene28198 | 0.836329 | 9.98E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene28198 | 0.8297 | 4.45E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene28198 | 0.827213 | 1.77E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene28198 | 0.81281 | 3.51E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene28198 | 0.817123 | 3.88E-52 | -1.69E-46 |
| MS.gene049452 | MS.gene28198 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene28198 | 0.802547 | 5.33E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene28198 | 0.817253 | 3.63E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene28198 | 0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene28198 | 0.826229 | 3.04E-54 | -1.69E-46 |
| MS.gene050237 | MS.gene28198 | 0.800434 | 1.44E-48 | -1.69E-46 |
| MS.gene050273 | MS.gene28198 | 0.819091 | 1.39E-52 | -1.69E-46 |
| MS.gene050759 | MS.gene28198 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene28198 | 0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene050962 | MS.gene28198 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene28198 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene28198 | 0.862052 | 6.66E-64 | -1.69E-46 |
| MS.gene051279 | MS.gene28198 | 0.84288 | 1.97E-58 | -1.69E-46 |
| MS.gene051332 | MS.gene28198 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene28198 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene28198 | 0.814835 | 1.26E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene28198 | 0.827379 | 1.62E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene28198 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene28198 | 0.807507 | 4.89E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene28198 | -0.810083 | 1.37E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene28198 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene28198 | 0.831699 | 1.44E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene28198 | 0.818787 | 1.63E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene28198 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene28198 | 0.818208 | 2.21E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene28198 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene28198 | 0.806209 | 9.19E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene28198 | 0.818469 | 1.93E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene28198 | 0.860475 | 2.01E-63 | -1.69E-46 |
| MS.gene053166 | MS.gene28198 | 0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene28198 | 0.812982 | 3.22E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene28198 | 0.822906 | 1.84E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene28198 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene28198 | 0.821761 | 3.40E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene28198 | 0.849028 | 4.21E-60 | -1.69E-46 |
| MS.gene054236 | MS.gene28198 | 0.802895 | 4.52E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene28198 | 0.809238 | 2.09E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene28198 | 0.813051 | 3.11E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene28198 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene28198 | 0.84606 | 2.75E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene28198 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene28198 | 0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene28198 | 0.842017 | 3.34E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene28198 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene28198 | 0.805408 | 1.35E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene28198 | 0.829754 | 4.31E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene28198 | 0.823118 | 1.64E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene28198 | 0.834453 | 2.97E-56 | -1.69E-46 |
| MS.gene056045 | MS.gene28198 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene28198 | 0.805389 | 1.37E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene28198 | 0.833298 | 5.78E-56 | -1.69E-46 |
| MS.gene056272 | MS.gene28198 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene28198 | 0.8284 | 9.18E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene28198 | 0.816233 | 6.15E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene28198 | 0.821225 | 4.52E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene28198 | 0.810834 | 9.46E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene28198 | 0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene28198 | 0.834111 | 3.62E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene28198 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene056973 | MS.gene28198 | 0.807616 | 4.63E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene28198 | 0.851144 | 1.07E-60 | -1.69E-46 |
| MS.gene057444 | MS.gene28198 | 0.814697 | 1.35E-51 | -1.69E-46 |
| MS.gene057446 | MS.gene28198 | 0.800244 | 1.58E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene28198 | 0.836741 | 7.83E-57 | -1.69E-46 |
| MS.gene057600 | MS.gene28198 | 0.820748 | 5.82E-53 | -1.69E-46 |
| MS.gene057855 | MS.gene28198 | 0.820905 | 5.36E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene28198 | 0.834833 | 2.38E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene28198 | 0.817121 | 3.89E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene28198 | 0.8148 | 1.28E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene28198 | 0.827267 | 1.72E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene28198 | 0.846068 | 2.74E-59 | -1.69E-46 |
| MS.gene058294 | MS.gene28198 | 0.806044 | 9.96E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene28198 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene058647 | MS.gene28198 | 0.808062 | 3.72E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene28198 | 0.806739 | 7.11E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene28198 | 0.838423 | 2.90E-57 | -1.69E-46 |
| MS.gene05897 | MS.gene28198 | 0.801082 | 1.06E-48 | -1.69E-46 |
| MS.gene059438 | MS.gene28198 | 0.809566 | 1.78E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene28198 | 0.836471 | 9.18E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene28198 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene28198 | 0.811857 | 5.68E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene28198 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene28198 | 0.805709 | 1.17E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene28198 | 0.828977 | 6.66E-55 | -1.69E-46 |
| MS.gene060918 | MS.gene28198 | 0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene28198 | 0.802571 | 5.27E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene28198 | 0.807907 | 4.02E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene28198 | 0.822879 | 1.87E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene28198 | 0.814378 | 1.59E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene28198 | 0.809208 | 2.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATGATGGTTCGCATTAT+TGG | 0.218150 | 3.3:-16972209 | MS.gene28198:CDS |
| GAAAGTGATGAAGCTTTCTT+AGG | 0.257531 | 3.3:-16974109 | MS.gene28198:CDS |
| TGCATGTTCTTGTCTTATAA+TGG | 0.258781 | 3.3:-16972358 | MS.gene28198:CDS |
| GGTTGCTAGGCATGCAAATT+TGG | 0.266321 | 3.3:-16972175 | MS.gene28198:CDS |
| CGATGATGGTTCGCATTATT+GGG | 0.275517 | 3.3:-16972208 | MS.gene28198:CDS |
| TGTCTTATAATGGAATCTAT+TGG | 0.304597 | 3.3:-16972348 | MS.gene28198:CDS |
| ACATGCAGATGATGAGGATT+TGG | 0.329267 | 3.3:-16974038 | MS.gene28198:CDS |
| GCATTATTGGGATTCTCATT+TGG | 0.338425 | 3.3:-16972196 | MS.gene28198:CDS |
| ACTGGAACATGTAAATTATC+TGG | 0.359467 | 3.3:+16972030 | None:intergenic |
| GAAGATGATTATTCCGTTGA+TGG | 0.369473 | 3.3:-16974073 | MS.gene28198:CDS |
| GGGATTCTCATTTGGTTGCT+AGG | 0.381367 | 3.3:-16972188 | MS.gene28198:CDS |
| CCAGACAATTCCCTTCAAAC+AGG | 0.391320 | 3.3:-16971838 | MS.gene28198:CDS |
| TGTGGGATTTGCGGTGCATC+TGG | 0.402584 | 3.3:-16971910 | MS.gene28198:CDS |
| GGTAGGCTAAAGTCAAAGTA+TGG | 0.424767 | 3.3:-16972066 | MS.gene28198:intron |
| AGTATGCTATCCACCTCAAC+TGG | 0.424915 | 3.3:+16972012 | None:intergenic |
| ATTACCTCTAATTGACTCCT+TGG | 0.438624 | 3.3:+16972233 | None:intergenic |
| ATTAGAGGTAATTTCGATGA+TGG | 0.442189 | 3.3:-16972222 | MS.gene28198:CDS |
| TGTCCTACACTTGATGTAGA+TGG | 0.468333 | 3.3:-16971871 | MS.gene28198:CDS |
| AGCGTACTGACCCTGTTTGA+AGG | 0.476847 | 3.3:+16971827 | None:intergenic |
| TGTTTCAGATTTCCGCTTCA+AGG | 0.478628 | 3.3:-16972634 | MS.gene28198:CDS |
| CCTGTTTGAAGGGAATTGTC+TGG | 0.485680 | 3.3:+16971838 | None:intergenic |
| CTAATTTGAGGTGGCTTGAG+AGG | 0.507400 | 3.3:-16972563 | MS.gene28198:intron |
| CTTTCTGTTCAAGAAGCAAA+GGG | 0.508849 | 3.3:-16971984 | MS.gene28198:CDS |
| ATTGAGAATTAAAATCAGCT+TGG | 0.511424 | 3.3:+16972607 | None:intergenic |
| ACACAAACATGTGGGATTTG+CGG | 0.513808 | 3.3:-16971919 | MS.gene28198:CDS |
| CGATTCAGCACTAAAGACTT+AGG | 0.516281 | 3.3:+16972270 | None:intergenic |
| AAGTCAAAGTATGGTGAAGA+AGG | 0.516408 | 3.3:-16972057 | MS.gene28198:CDS |
| TCTTTCTGTTCAAGAAGCAA+AGG | 0.521888 | 3.3:-16971985 | MS.gene28198:CDS |
| TGTTGACGATATTGTAAAGA+TGG | 0.525284 | 3.3:-16973942 | MS.gene28198:CDS |
| TGAAATTTCCTCGCCATCAA+CGG | 0.534707 | 3.3:+16974060 | None:intergenic |
| GCGTACTGACCCTGTTTGAA+GGG | 0.538891 | 3.3:+16971828 | None:intergenic |
| TTTACATGTTCCAGTTGAGG+TGG | 0.540673 | 3.3:-16972022 | MS.gene28198:CDS |
| TGATTATTCCGTTGATGGCG+AGG | 0.543980 | 3.3:-16974068 | MS.gene28198:CDS |
| TAATTTACATGTTCCAGTTG+AGG | 0.544755 | 3.3:-16972025 | MS.gene28198:CDS |
| CGGTGTTACAGACTAATTTG+AGG | 0.547673 | 3.3:-16972575 | MS.gene28198:CDS |
| TGTTCAAGAAGCAAAGGGTG+TGG | 0.564833 | 3.3:-16971979 | MS.gene28198:CDS |
| AGTCTTTAGTGCTGAATCGT+TGG | 0.565841 | 3.3:-16972266 | MS.gene28198:CDS |
| CAGCTTGGACTTCCTTGAAG+CGG | 0.570119 | 3.3:+16972622 | None:intergenic |
| AATTTCACATGCAGATGATG+AGG | 0.582843 | 3.3:-16974044 | MS.gene28198:CDS |
| GGTAGCGCTAGGAATGCAAT+GGG | 0.585612 | 3.3:-16971955 | MS.gene28198:CDS |
| AGGTAGCGCTAGGAATGCAA+TGG | 0.594190 | 3.3:-16971956 | MS.gene28198:CDS |
| CACATGTTTGTGTTCTACGT+CGG | 0.597562 | 3.3:+16971929 | None:intergenic |
| AAGGGTGTGGAGGTAGCGCT+AGG | 0.600293 | 3.3:-16971966 | MS.gene28198:CDS |
| CATGCAAATTCATCGTTCGA+TGG | 0.601122 | 3.3:+16972375 | None:intergenic |
| CAGACAATTCCCTTCAAACA+GGG | 0.611490 | 3.3:-16971837 | MS.gene28198:CDS |
| CGACGTAGAACACAAACATG+TGG | 0.621039 | 3.3:-16971928 | MS.gene28198:CDS |
| TGTTACAGACTAATTTGAGG+TGG | 0.630244 | 3.3:-16972572 | MS.gene28198:CDS |
| GACGTAGAACACAAACATGT+GGG | 0.632169 | 3.3:-16971927 | MS.gene28198:CDS |
| GCAGATGATGAGGATTTGGA+CGG | 0.633477 | 3.3:-16974034 | MS.gene28198:CDS |
| TCACCATCTACATCAAGTGT+AGG | 0.634744 | 3.3:+16971868 | None:intergenic |
| TAATTCTCAATACGGGAGTG+CGG | 0.640087 | 3.3:-16972595 | MS.gene28198:CDS |
| TCAAGAAGCAAAGGGTGTGG+AGG | 0.641162 | 3.3:-16971976 | MS.gene28198:CDS |
| ACAACGATGATATGCTCACA+AGG | 0.698087 | 3.3:+16972321 | None:intergenic |
| GGACGGAAATTCTGACGATG+TGG | 0.703394 | 3.3:-16974017 | MS.gene28198:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATCTAGAATATCTAA+CGG | - | chr3.3:16974089-16974108 | MS.gene28198:CDS | 15.0% |
| !! | AAAACATGGTATATAAAACT+AGG | + | chr3.3:16971892-16971911 | None:intergenic | 20.0% |
| !! | ATTTACAAATATACAAGATG+TGG | - | chr3.3:16971835-16971854 | MS.gene28198:CDS | 20.0% |
| !!! | AGCATACATCTTTTAAAAAA+TGG | + | chr3.3:16973283-16973302 | None:intergenic | 20.0% |
| !!! | GCATACATCTTTTAAAAAAT+GGG | + | chr3.3:16973282-16973301 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAAGATGTATGCT+AGG | - | chr3.3:16973283-16973302 | MS.gene28198:intron | 20.0% |
| ! | AAACCAACAGTAAAAATTGT+AGG | + | chr3.3:16972330-16972349 | None:intergenic | 25.0% |
| ! | AATATCATGATTGTGATCAA+AGG | + | chr3.3:16972582-16972601 | None:intergenic | 25.0% |
| ! | AATGAAATGGTTGAAAAGTT+TGG | - | chr3.3:16973340-16973359 | MS.gene28198:intron | 25.0% |
| ! | ATAGACAAGAAAGTTATGTT+TGG | - | chr3.3:16973773-16973792 | MS.gene28198:intron | 25.0% |
| ! | ATTGAGAATTAAAATCAGCT+TGG | + | chr3.3:16973582-16973601 | None:intergenic | 25.0% |
| ! | CACTAAAGAAATATTTGAGA+TGG | - | chr3.3:16973663-16973682 | MS.gene28198:intron | 25.0% |
| ! | TAAATGATCTGTATGAGAAA+AGG | - | chr3.3:16973383-16973402 | MS.gene28198:intron | 25.0% |
| ! | TATATCACCATCTGTTATTA+CGG | + | chr3.3:16973152-16973171 | None:intergenic | 25.0% |
| ! | TTGATATAATTACTCAACGT+TGG | - | chr3.3:16972540-16972559 | MS.gene28198:intron | 25.0% |
| ! | TTTGGAAATTTGAAAATCTC+TGG | - | chr3.3:16973317-16973336 | MS.gene28198:intron | 25.0% |
| !! | ACAAAGAAAAGTGATGTTTT+CGG | - | chr3.3:16972790-16972809 | MS.gene28198:intron | 25.0% |
| !! | TAAGATAGGATTTCTGAAAA+AGG | - | chr3.3:16972745-16972764 | MS.gene28198:intron | 25.0% |
| !! | TGTCTTATAATGGAATCTAT+TGG | - | chr3.3:16973838-16973857 | MS.gene28198:intron | 25.0% |
| !!! | CAAAAATAATTTTCTGGTTG+TGG | + | chr3.3:16973039-16973058 | None:intergenic | 25.0% |
| !!! | CTGATTTTAATTCTCAATAC+GGG | - | chr3.3:16973584-16973603 | MS.gene28198:intron | 25.0% |
| !!! | GCTGATTTTAATTCTCAATA+CGG | - | chr3.3:16973583-16973602 | MS.gene28198:intron | 25.0% |
| ACATAACCTATGATAACTCT+TGG | + | chr3.3:16973206-16973225 | None:intergenic | 30.0% | |
| ACTGGAACATGTAAATTATC+TGG | + | chr3.3:16974159-16974178 | None:intergenic | 30.0% | |
| AGATAATCCGACAAACAAAT+GGG | + | chr3.3:16971867-16971886 | None:intergenic | 30.0% | |
| ATCAATATGCACACGAAATT+TGG | + | chr3.3:16972525-16972544 | None:intergenic | 30.0% | |
| ATTAGAGGTAATTTCGATGA+TGG | - | chr3.3:16973964-16973983 | MS.gene28198:CDS | 30.0% | |
| CAAACATCAATGGATCTTTA+CGG | + | chr3.3:16972853-16972872 | None:intergenic | 30.0% | |
| CATAACCTATGATAACTCTT+GGG | + | chr3.3:16973205-16973224 | None:intergenic | 30.0% | |
| GTATGAGAAAAGGAAAATGT+GGG | - | chr3.3:16973393-16973412 | MS.gene28198:intron | 30.0% | |
| TAATTTACATGTTCCAGTTG+AGG | - | chr3.3:16974161-16974180 | MS.gene28198:intron | 30.0% | |
| TGCATGTTCTTGTCTTATAA+TGG | - | chr3.3:16973828-16973847 | MS.gene28198:intron | 30.0% | |
| TGTATGAGAAAAGGAAAATG+TGG | - | chr3.3:16973392-16973411 | MS.gene28198:intron | 30.0% | |
| TGTTGACGATATTGTAAAGA+TGG | - | chr3.3:16972244-16972263 | MS.gene28198:CDS | 30.0% | |
| TTGTTTCAAATGAGGTTGAA+AGG | - | chr3.3:16973068-16973087 | MS.gene28198:intron | 30.0% | |
| ! | AACCTCATTTGAAACAATAG+CGG | + | chr3.3:16973065-16973084 | None:intergenic | 30.0% |
| ! | AAGATTCAAGTTACCAACTT+TGG | - | chr3.3:16972659-16972678 | MS.gene28198:intron | 30.0% |
| ! | ATTGATGTTTGTTGCACATA+CGG | - | chr3.3:16972862-16972881 | MS.gene28198:intron | 30.0% |
| ! | ATTTTGTTAAGCACTTCCAT+AGG | - | chr3.3:16973527-16973546 | MS.gene28198:intron | 30.0% |
| ! | CGGTAGCAAAAATAATTTTC+TGG | + | chr3.3:16973045-16973064 | None:intergenic | 30.0% |
| ! | TTGCCTACAATTTTTACTGT+TGG | - | chr3.3:16972324-16972343 | MS.gene28198:CDS | 30.0% |
| ! | TTTGGTGTATCTTAGTAAGT+AGG | - | chr3.3:16974029-16974048 | MS.gene28198:CDS | 30.0% |
| ! | TTTTTCCCAAGAGTTATCAT+AGG | - | chr3.3:16973197-16973216 | MS.gene28198:intron | 30.0% |
| !! | AAAACTTATTCTGGAGTGAT+GGG | - | chr3.3:16972906-16972925 | MS.gene28198:intron | 30.0% |
| !! | TGAAAATCTCTGGAATGAAA+TGG | - | chr3.3:16973327-16973346 | MS.gene28198:intron | 30.0% |
| !!! | AAATAATTTTCTGGTTGTGG+TGG | + | chr3.3:16973036-16973055 | None:intergenic | 30.0% |
| AAGTCAAAGTATGGTGAAGA+AGG | - | chr3.3:16974129-16974148 | MS.gene28198:CDS | 35.0% | |
| AATTTCACATGCAGATGATG+AGG | - | chr3.3:16972142-16972161 | MS.gene28198:intron | 35.0% | |
| ACATTTGTGTGCAATCTAGA+AGG | - | chr3.3:16972422-16972441 | MS.gene28198:intron | 35.0% | |
| ACCATCTGTTATTACGGATA+CGG | + | chr3.3:16973146-16973165 | None:intergenic | 35.0% | |
| AGTGTATAAACTGACCCATA+TGG | + | chr3.3:16973489-16973508 | None:intergenic | 35.0% | |
| CAGAAGAATTTCGAAGTCTT+TGG | - | chr3.3:16972935-16972954 | MS.gene28198:intron | 35.0% | |
| CAGATAATCCGACAAACAAA+TGG | + | chr3.3:16971868-16971887 | None:intergenic | 35.0% | |
| CATCGACATCCTTATATGAT+AGG | + | chr3.3:16974062-16974081 | None:intergenic | 35.0% | |
| CTTTCTGTTCAAGAAGCAAA+GGG | - | chr3.3:16974202-16974221 | MS.gene28198:intron | 35.0% | |
| GAAACCAAGATTACCAATGT+TGG | + | chr3.3:16973257-16973276 | None:intergenic | 35.0% | |
| GAAAGTGATGAAGCTTTCTT+AGG | - | chr3.3:16972077-16972096 | MS.gene28198:intron | 35.0% | |
| GAAGATGATTATTCCGTTGA+TGG | - | chr3.3:16972113-16972132 | MS.gene28198:intron | 35.0% | |
| GCATTATTGGGATTCTCATT+TGG | - | chr3.3:16973990-16974009 | MS.gene28198:CDS | 35.0% | |
| GGTACGAAAAGTCATAAACA+AGG | - | chr3.3:16973684-16973703 | MS.gene28198:intron | 35.0% | |
| GGTTTGCAACCTATCATATA+AGG | - | chr3.3:16974050-16974069 | MS.gene28198:CDS | 35.0% | |
| GTATGTGCAACAAACATCAA+TGG | + | chr3.3:16972863-16972882 | None:intergenic | 35.0% | |
| GTTATCATAGGTTATGTGCA+TGG | - | chr3.3:16973209-16973228 | MS.gene28198:intron | 35.0% | |
| TACCGCTATTGTTTCAAATG+AGG | - | chr3.3:16973060-16973079 | MS.gene28198:intron | 35.0% | |
| TCTTTCTGTTCAAGAAGCAA+AGG | - | chr3.3:16974201-16974220 | MS.gene28198:intron | 35.0% | |
| TGTTACAGACTAATTTGAGG+TGG | - | chr3.3:16973614-16973633 | MS.gene28198:intron | 35.0% | |
| ! | ATGACCAACATTGGTAATCT+TGG | - | chr3.3:16973250-16973269 | MS.gene28198:intron | 35.0% |
| ! | ATGTTTCGAAGCTGCTATTT+AGG | - | chr3.3:16972291-16972310 | MS.gene28198:CDS | 35.0% |
| ! | ATTACCTCTAATTGACTCCT+TGG | + | chr3.3:16973956-16973975 | None:intergenic | 35.0% |
| ! | CAGTTATTGGTTGCAATGAA+GGG | - | chr3.3:16973112-16973131 | MS.gene28198:intron | 35.0% |
| ! | GAATATCTAACGGATGAACT+TGG | - | chr3.3:16974099-16974118 | MS.gene28198:CDS | 35.0% |
| ! | TCCATTGCTTGCTAAAAACA+TGG | + | chr3.3:16971906-16971925 | None:intergenic | 35.0% |
| ! | TCGTTGGTCAATATTTTCCA+AGG | - | chr3.3:16973936-16973955 | MS.gene28198:intron | 35.0% |
| ! | TTTTCCAAGGAGTCAATTAG+AGG | - | chr3.3:16973949-16973968 | MS.gene28198:CDS | 35.0% |
| !! | AAACTTATTCTGGAGTGATG+GGG | - | chr3.3:16972907-16972926 | MS.gene28198:intron | 35.0% |
| !! | CAAAACTTATTCTGGAGTGA+TGG | - | chr3.3:16972905-16972924 | MS.gene28198:intron | 35.0% |
| !! | TGTTGGTTTGCAAAGATGAA+TGG | - | chr3.3:16972341-16972360 | MS.gene28198:CDS | 35.0% |
| !!! | ACCATGTTTTTAGCAAGCAA+TGG | - | chr3.3:16971902-16971921 | MS.gene28198:CDS | 35.0% |
| ACAACGATGATATGCTCACA+AGG | + | chr3.3:16973868-16973887 | None:intergenic | 40.0% | |
| ACACAAACATGTGGGATTTG+CGG | - | chr3.3:16974267-16974286 | MS.gene28198:intron | 40.0% | |
| ACACCAGAGAACACAACAAA+TGG | + | chr3.3:16973010-16973029 | None:intergenic | 40.0% | |
| ACATGAGAATGAAGCTGATG+CGG | - | chr3.3:16971935-16971954 | MS.gene28198:CDS | 40.0% | |
| ACATGCAGATGATGAGGATT+TGG | - | chr3.3:16972148-16972167 | MS.gene28198:intron | 40.0% | |
| AGGTTGAAAGGACATATGTG+CGG | - | chr3.3:16973080-16973099 | MS.gene28198:intron | 40.0% | |
| ATTCGGGGAAATTTCTTTGC+AGG | - | chr3.3:16973427-16973446 | MS.gene28198:intron | 40.0% | |
| CACATGTTTGTGTTCTACGT+CGG | + | chr3.3:16974260-16974279 | None:intergenic | 40.0% | |
| CAGACAATTCCCTTCAAACA+GGG | - | chr3.3:16974349-16974368 | MS.gene28198:intron | 40.0% | |
| CAGATGGTGATATAGCAATG+AGG | - | chr3.3:16973158-16973177 | MS.gene28198:intron | 40.0% | |
| CATGCAAATTCATCGTTCGA+TGG | + | chr3.3:16973814-16973833 | None:intergenic | 40.0% | |
| CCACACATGGTTTCATGTTT+CGG | + | chr3.3:16972494-16972513 | None:intergenic | 40.0% | |
| CCATCTGTTATTACGGATAC+GGG | + | chr3.3:16973145-16973164 | None:intergenic | 40.0% | |
| CGAAATGCAATGACCAACAT+TGG | - | chr3.3:16973241-16973260 | MS.gene28198:intron | 40.0% | |
| CGATTCAGCACTAAAGACTT+AGG | + | chr3.3:16973919-16973938 | None:intergenic | 40.0% | |
| GACGTAGAACACAAACATGT+GGG | - | chr3.3:16974259-16974278 | MS.gene28198:intron | 40.0% | |
| GGTAGGCTAAAGTCAAAGTA+TGG | - | chr3.3:16974120-16974139 | MS.gene28198:CDS | 40.0% | |
| GTAGGCTGCAAAACTTATTC+TGG | - | chr3.3:16972897-16972916 | MS.gene28198:intron | 40.0% | |
| GTTGTGACCCATTTGTTTGT+CGG | - | chr3.3:16971857-16971876 | MS.gene28198:CDS | 40.0% | |
| TAATTCTCAATACGGGAGTG+CGG | - | chr3.3:16973591-16973610 | MS.gene28198:intron | 40.0% | |
| TATCTTATCATACCTGCCAG+CGG | + | chr3.3:16972732-16972751 | None:intergenic | 40.0% | |
| TCACCATCTACATCAAGTGT+AGG | + | chr3.3:16974321-16974340 | None:intergenic | 40.0% | |
| TGAAATTTCCTCGCCATCAA+CGG | + | chr3.3:16972129-16972148 | None:intergenic | 40.0% | |
| TGAGAAACATTGTGCATTGC+TGG | - | chr3.3:16972607-16972626 | MS.gene28198:CDS | 40.0% | |
| TGCTAGGTGATCATGAAGTT+TGG | - | chr3.3:16973299-16973318 | MS.gene28198:intron | 40.0% | |
| TGTCCTACACTTGATGTAGA+TGG | - | chr3.3:16974315-16974334 | MS.gene28198:intron | 40.0% | |
| TGTGCAATCTAGAAGGTTTC+AGG | - | chr3.3:16972429-16972448 | MS.gene28198:intron | 40.0% | |
| TGTTGGTCATTGCATTTCGT+AGG | + | chr3.3:16973240-16973259 | None:intergenic | 40.0% | |
| TGTTTCAGATTTCCGCTTCA+AGG | - | chr3.3:16973552-16973571 | MS.gene28198:intron | 40.0% | |
| TTTACATGTTCCAGTTGAGG+TGG | - | chr3.3:16974164-16974183 | MS.gene28198:intron | 40.0% | |
| ! | AGTCTTTAGTGCTGAATCGT+TGG | - | chr3.3:16973920-16973939 | MS.gene28198:intron | 40.0% |
| ! | ATCTAACGGATGAACTTGGT+AGG | - | chr3.3:16974103-16974122 | MS.gene28198:CDS | 40.0% |
| ! | ATGTTTGTTGCACATACGGT+TGG | - | chr3.3:16972866-16972885 | MS.gene28198:intron | 40.0% |
| ! | CGATGATGGTTCGCATTATT+GGG | - | chr3.3:16973978-16973997 | MS.gene28198:CDS | 40.0% |
| ! | GCAGTTATTGGTTGCAATGA+AGG | - | chr3.3:16973111-16973130 | MS.gene28198:intron | 40.0% |
| ! | GGAAATCTGAAACACACCTA+TGG | + | chr3.3:16973546-16973565 | None:intergenic | 40.0% |
| ! | TCGATGATGGTTCGCATTAT+TGG | - | chr3.3:16973977-16973996 | MS.gene28198:CDS | 40.0% |
| ! | TTGGTCTTCAAGAGAACAGA+TGG | - | chr3.3:16973359-16973378 | MS.gene28198:intron | 40.0% |
| !! | AATGGTTTTGCTGTGAGGAA+AGG | - | chr3.3:16972359-16972378 | MS.gene28198:CDS | 40.0% |
| !! | AGATGAATGGTTTTGCTGTG+AGG | - | chr3.3:16972354-16972373 | MS.gene28198:CDS | 40.0% |
| !! | CGGTGTTACAGACTAATTTG+AGG | - | chr3.3:16973611-16973630 | MS.gene28198:intron | 40.0% |
| !! | GAAGGAAATGATAGTGGTGA+CGG | - | chr3.3:16972005-16972024 | MS.gene28198:CDS | 40.0% |
| !! | TGTCCATTTGTTGTGTTCTC+TGG | - | chr3.3:16973004-16973023 | MS.gene28198:intron | 40.0% |
| AGAAGGTTTCAGGAGAGACA+GGG | - | chr3.3:16972439-16972458 | MS.gene28198:intron | 45.0% | |
| AGAATGAAGCTGATGCGGAA+GGG | - | chr3.3:16971940-16971959 | MS.gene28198:CDS | 45.0% | |
| AGTATGCTATCCACCTCAAC+TGG | + | chr3.3:16974177-16974196 | None:intergenic | 45.0% | |
| CCAGACAATTCCCTTCAAAC+AGG | - | chr3.3:16974348-16974367 | MS.gene28198:intron | 45.0% | |
| CCCGTATCCGTAATAACAGA+TGG | - | chr3.3:16973142-16973161 | MS.gene28198:intron | 45.0% | |
| CCGAAACATGAAACCATGTG+TGG | - | chr3.3:16972491-16972510 | MS.gene28198:intron | 45.0% | |
| CCTGTTTGAAGGGAATTGTC+TGG | + | chr3.3:16974351-16974370 | None:intergenic | 45.0% | |
| CGACGTAGAACACAAACATG+TGG | - | chr3.3:16974258-16974277 | MS.gene28198:intron | 45.0% | |
| GAAGCAGATGATACTGGTGA+CGG | - | chr3.3:16971981-16972000 | MS.gene28198:CDS | 45.0% | |
| GATTCCAGCATTGCCAAAGT+TGG | + | chr3.3:16972675-16972694 | None:intergenic | 45.0% | |
| GCAGATGATGAGGATTTGGA+CGG | - | chr3.3:16972152-16972171 | MS.gene28198:intron | 45.0% | |
| GCTGGCAGGTATGATAAGAT+AGG | - | chr3.3:16972731-16972750 | MS.gene28198:intron | 45.0% | |
| GGGATTCTCATTTGGTTGCT+AGG | - | chr3.3:16973998-16974017 | MS.gene28198:CDS | 45.0% | |
| GGTTGCTAGGCATGCAAATT+TGG | - | chr3.3:16974011-16974030 | MS.gene28198:CDS | 45.0% | |
| GTTACCAACTTTGGCAATGC+TGG | - | chr3.3:16972668-16972687 | MS.gene28198:intron | 45.0% | |
| TAGAACAACATCCCGTTGTG+AGG | - | chr3.3:16973453-16973472 | MS.gene28198:intron | 45.0% | |
| TAGAAGGTTTCAGGAGAGAC+AGG | - | chr3.3:16972438-16972457 | MS.gene28198:intron | 45.0% | |
| TGTTCAAGAAGCAAAGGGTG+TGG | - | chr3.3:16974207-16974226 | MS.gene28198:intron | 45.0% | |
| ! | CTAATTTGAGGTGGCTTGAG+AGG | - | chr3.3:16973623-16973642 | MS.gene28198:intron | 45.0% |
| ! | GAGGCGTTTCATAGCCATAT+GGG | - | chr3.3:16973472-16973491 | MS.gene28198:intron | 45.0% |
| ! | GCTGCTATTTAGGAGTCTTG+AGG | - | chr3.3:16972301-16972320 | MS.gene28198:CDS | 45.0% |
| ! | TGAGGCGTTTCATAGCCATA+TGG | - | chr3.3:16973471-16973490 | MS.gene28198:intron | 45.0% |
| ! | TTTGGCTTCACAACCACACA+TGG | + | chr3.3:16972507-16972526 | None:intergenic | 45.0% |
| !! | AATGATAGTGGTGACGGTGA+AGG | - | chr3.3:16972011-16972030 | MS.gene28198:CDS | 45.0% |
| !! | GAAGGGGATGATAATGGTGA+CGG | - | chr3.3:16971957-16971976 | MS.gene28198:CDS | 45.0% |
| !! | TGATTATTCCGTTGATGGCG+AGG | - | chr3.3:16972118-16972137 | MS.gene28198:intron | 45.0% |
| AAGGTTTCAGGAGAGACAGG+GGG | - | chr3.3:16972441-16972460 | MS.gene28198:intron | 50.0% | |
| AGACAGGGGGTTAACAGTAG+AGG | - | chr3.3:16972454-16972473 | MS.gene28198:intron | 50.0% | |
| AGGTAGCGCTAGGAATGCAA+TGG | - | chr3.3:16974230-16974249 | MS.gene28198:intron | 50.0% | |
| CAGCTTGGACTTCCTTGAAG+CGG | + | chr3.3:16973567-16973586 | None:intergenic | 50.0% | |
| GAAGGTTTCAGGAGAGACAG+GGG | - | chr3.3:16972440-16972459 | MS.gene28198:intron | 50.0% | |
| GAATGAAGCTGATGCGGAAG+GGG | - | chr3.3:16971941-16971960 | MS.gene28198:CDS | 50.0% | |
| GACGGCGAAGGAAATGATAG+TGG | - | chr3.3:16971999-16972018 | MS.gene28198:CDS | 50.0% | |
| GACGGTGAAGCAGATGATAC+TGG | - | chr3.3:16971975-16971994 | MS.gene28198:CDS | 50.0% | |
| GAGAATGAAGCTGATGCGGA+AGG | - | chr3.3:16971939-16971958 | MS.gene28198:CDS | 50.0% | |
| GATGCGGAAGGGGATGATAA+TGG | - | chr3.3:16971951-16971970 | MS.gene28198:CDS | 50.0% | |
| GATGTGTTTGCAAATGCCGC+TGG | - | chr3.3:16972713-16972732 | MS.gene28198:intron | 50.0% | |
| GCGGTTGCTTGAGCAGTTAT+TGG | - | chr3.3:16973099-16973118 | MS.gene28198:intron | 50.0% | |
| GCTATGAAACGCCTCACAAC+GGG | + | chr3.3:16973467-16973486 | None:intergenic | 50.0% | |
| GGACGGAAATTCTGACGATG+TGG | - | chr3.3:16972169-16972188 | MS.gene28198:CDS | 50.0% | |
| GGCTATGAAACGCCTCACAA+CGG | + | chr3.3:16973468-16973487 | None:intergenic | 50.0% | |
| GGTAGCGCTAGGAATGCAAT+GGG | - | chr3.3:16974231-16974250 | MS.gene28198:intron | 50.0% | |
| TGTGGGCAGCGAGTCATATT+CGG | - | chr3.3:16973410-16973429 | MS.gene28198:intron | 50.0% | |
| ! | AGCGTACTGACCCTGTTTGA+AGG | + | chr3.3:16974362-16974381 | None:intergenic | 50.0% |
| ! | ATACGGTTGGTGCAGATGGT+AGG | - | chr3.3:16972879-16972898 | MS.gene28198:intron | 50.0% |
| ! | GCGTACTGACCCTGTTTGAA+GGG | + | chr3.3:16974361-16974380 | None:intergenic | 50.0% |
| ! | GGAGATAGTGGTGACGATGA+AGG | - | chr3.3:16972032-16972051 | MS.gene28198:CDS | 50.0% |
| ! | TCAAGAAGCAAAGGGTGTGG+AGG | - | chr3.3:16974210-16974229 | MS.gene28198:intron | 50.0% |
| ACAGTAGAGGAACGCAAGCG+TGG | - | chr3.3:16972467-16972486 | MS.gene28198:intron | 55.0% | |
| GTGGGCAGCGAGTCATATTC+GGG | - | chr3.3:16973411-16973430 | MS.gene28198:intron | 55.0% | |
| TGGGCAGCGAGTCATATTCG+GGG | - | chr3.3:16973412-16973431 | MS.gene28198:intron | 55.0% | |
| TGTGGGATTTGCGGTGCATC+TGG | - | chr3.3:16974276-16974295 | MS.gene28198:intron | 55.0% | |
| TGTTTGCAAATGCCGCTGGC+AGG | - | chr3.3:16972717-16972736 | MS.gene28198:intron | 55.0% | |
| ! | GCACATACGGTTGGTGCAGA+TGG | - | chr3.3:16972875-16972894 | MS.gene28198:intron | 55.0% |
| ! | GGTGACGGTGAAGGAGATAG+TGG | - | chr3.3:16972020-16972039 | MS.gene28198:CDS | 55.0% |
| ! | GTGCATTGCTGGCTGCTCAT+AGG | - | chr3.3:16972618-16972637 | MS.gene28198:CDS | 55.0% |
| !! | GATGATACTGGTGACGGCGA+AGG | - | chr3.3:16971987-16972006 | MS.gene28198:CDS | 55.0% |
| ! | AAGGGTGTGGAGGTAGCGCT+AGG | - | chr3.3:16974220-16974239 | MS.gene28198:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 16971810 | 16974398 | 16971810 | ID=MS.gene28198 |
| chr3.3 | mRNA | 16971810 | 16974398 | 16971810 | ID=MS.gene28198.t1;Parent=MS.gene28198 |
| chr3.3 | exon | 16974384 | 16974398 | 16974384 | ID=MS.gene28198.t1.exon1;Parent=MS.gene28198.t1 |
| chr3.3 | CDS | 16974384 | 16974398 | 16974384 | ID=cds.MS.gene28198.t1;Parent=MS.gene28198.t1 |
| chr3.3 | exon | 16973938 | 16974149 | 16973938 | ID=MS.gene28198.t1.exon2;Parent=MS.gene28198.t1 |
| chr3.3 | CDS | 16973938 | 16974149 | 16973938 | ID=cds.MS.gene28198.t1;Parent=MS.gene28198.t1 |
| chr3.3 | exon | 16972564 | 16972659 | 16972564 | ID=MS.gene28198.t1.exon3;Parent=MS.gene28198.t1 |
| chr3.3 | CDS | 16972564 | 16972659 | 16972564 | ID=cds.MS.gene28198.t1;Parent=MS.gene28198.t1 |
| chr3.3 | exon | 16972162 | 16972398 | 16972162 | ID=MS.gene28198.t1.exon4;Parent=MS.gene28198.t1 |
| chr3.3 | CDS | 16972162 | 16972398 | 16972162 | ID=cds.MS.gene28198.t1;Parent=MS.gene28198.t1 |
| chr3.3 | exon | 16971810 | 16972083 | 16971810 | ID=MS.gene28198.t1.exon5;Parent=MS.gene28198.t1 |
| chr3.3 | CDS | 16971810 | 16972083 | 16971810 | ID=cds.MS.gene28198.t1;Parent=MS.gene28198.t1 |
| Gene Sequence |
| Protein sequence |
